3.1.20221109155812

What's Changed

• udocker: use --nobanner as well by @mr-c in #1761

Full Changelog: 3.1.20221108205138...3.1.20221109155812

3.1.20221108205138

What's Changed

• Fix '--make-template' for union types by @tom-tan in #1760

misc

• upgrade udocker test to v1.3.5 by @mr-c in #1756
• Update pytest requirement from <7.2,>=6.2 to >=6.2,<7.3 by @dependabot in #1757
• Bump mypy from 0.982 to 0.990 by @dependabot in #1759

Full Changelog: 3.1.20221018083734...3.1.20221108205138

3.1.20221018083734

What's Changed

• link to loops docs by @mr-c in #1749
• allow mypy process type to be used as by interpreted subclasses by @fmigneault in #1746

New Contributors

• @fmigneault made their first contribution in #1746

Full Changelog: 3.1.20221008225030...3.1.20221018083734

3.1.20221008225030

What's new

• implement the loop construct extension by @GlassOfWhiskey and @mr-c in #1641

Misc

• Add QEMU step and platforms field to the publish action for Arm Docker image by @suecharo in #1736
• quay: publish ":latest" tag by @mr-c in #1737
• Bump mypy from 0.971 to 0.982 by @dependabot in #1739 #1747
• test with Python 3.11 by @mr-c in #1742

Full Changelog: 3.1.20220913185150...3.1.20221008225030

3.1.20220913185150

What's Changed

• notifyAll → notify_all: deprecated in Python 3.x; not even listed in the docs. by @mr-c in #1734
• Experimental fast validator code path, using cwl-utils by @tetron in #1720
• conformance coverage: ignore more paths by @mr-c in #1735

Full Changelog: 3.1.20220907141119...3.1.20220913185150

3.1.20220907141119

What's Changed

• upgrade jshint to version 2.13.5 by @mr-c in #1729
• Workflow checker: ignore 'null' when comparing arrays of types by @mr-c in #1721
• Handle relative paths and locations in cwl.output.json by @tetron in #1732

Full Changelog: 3.1.20220830195442...3.1.20220907141119

3.1.20220830195442

What's Changed

• fixed --beta-use-biocontainers by @mr-c in #1724

• Provenance: fix bagit structure when there are no data files by @simleo in #1727

• Fix codespell issues by @kinow in #1715

• tidy up rdflib type hints by @mr-c in #1702

• Import dependencies from cwl_utils after code refactoring by @GlassOfWhiskey in #1686

• remove some psutil type ignores by @mr-c in #1707

• Update .gitignore by @jjkoehorst in #1711

• Update CONTRIBUTING.md by @jjkoehorst in #1712

• remove old cruft by @mr-c in #1716

• tests: reduce number of software containers by @mr-c in #1718

• Import check_format from cwl-utils by @GlassOfWhiskey in #1717

• 22.x1 release of galaxy-tool-util breaks us by @mr-c in #1723

• improve test running on mac-os by @mr-c in #1710

• CONTRIBUTING.md: recommend updating pip in the dev venv by @simleo in #1726

New Contributors

• @GlassOfWhiskey made their first contribution in #1686
• @jjkoehorst made their first contribution in #1711

Full Changelog: 3.1.20220802125926...3.1.20220830195442

3.1.20220802125926

What's Changed

• include ruamel.yaml in the mypy reqs & fix/test container build by @mr-c in #1701

Full Changelog: 3.1.20220801180230...3.1.20220802125926

3.1.20220801180230

What's Changed

• Ignore flake8-bugbear false positives by @mr-c in #1691
• logging.warn is deprecated, use warning by @kinow in #1692
• Exclude children of subdirectories from symlink by @jfennick in #1690
• Set last modification date of remote file as local file timestamp by @RenskeW in #1676
• Bump mypy from 0.961 to 0.971 by @dependabot in #1697
• Update rdflib requirement from <6.2,>=4.2.2 to >=4.2.2,<6.3 by @dependabot in #1698
• MyPy stubs rename by @mr-c in #1699

New Contributors

• @jfennick made their first contribution in #1690

Full Changelog: 3.1.20220628170238...3.1.20220801180230

3.1.20220623174452

What's Changed

• Prevent the default value from being used when values were already passed by @kinow in #1675
• Expressiontool timer by @douglowe in #1681
• Bump actions/setup-python from 3 to 4 by @dependabot in #1679

New Contributors

• @douglowe made their first contribution in #1681

Full Changelog: 3.1.20220607081835...3.1.20220623174452