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reader.rs
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reader.rs
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// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.
//! Arrow IPC File and Stream Readers
//!
//! The `FileReader` and `StreamReader` have similar interfaces,
//! however the `FileReader` expects a reader that supports `Seek`ing
use flatbuffers::VectorIter;
use std::collections::HashMap;
use std::fmt;
use std::io::{BufReader, Cursor, Read, Seek, SeekFrom};
use std::sync::Arc;
use arrow_array::*;
use arrow_buffer::{Buffer, MutableBuffer};
use arrow_data::ArrayData;
use arrow_schema::*;
use crate::compression::CompressionCodec;
use crate::{FieldNode, MetadataVersion, CONTINUATION_MARKER};
use DataType::*;
/// Read a buffer based on offset and length
/// From <https://github.com/apache/arrow/blob/6a936c4ff5007045e86f65f1a6b6c3c955ad5103/format/Message.fbs#L58>
/// Each constituent buffer is first compressed with the indicated
/// compressor, and then written with the uncompressed length in the first 8
/// bytes as a 64-bit little-endian signed integer followed by the compressed
/// buffer bytes (and then padding as required by the protocol). The
/// uncompressed length may be set to -1 to indicate that the data that
/// follows is not compressed, which can be useful for cases where
/// compression does not yield appreciable savings.
fn read_buffer(
buf: &crate::Buffer,
a_data: &Buffer,
compression_codec: Option<CompressionCodec>,
) -> Result<Buffer, ArrowError> {
let start_offset = buf.offset() as usize;
let buf_data = a_data.slice_with_length(start_offset, buf.length() as usize);
// corner case: empty buffer
match (buf_data.is_empty(), compression_codec) {
(true, _) | (_, None) => Ok(buf_data),
(false, Some(decompressor)) => decompressor.decompress_to_buffer(&buf_data),
}
}
/// Coordinates reading arrays based on data types.
///
/// Notes:
/// * In the IPC format, null buffers are always set, but may be empty. We discard them if an array has 0 nulls
/// * Numeric values inside list arrays are often stored as 64-bit values regardless of their data type size.
/// We thus:
/// - check if the bit width of non-64-bit numbers is 64, and
/// - read the buffer as 64-bit (signed integer or float), and
/// - cast the 64-bit array to the appropriate data type
fn create_array(reader: &mut ArrayReader, field: &Field) -> Result<ArrayRef, ArrowError> {
let data_type = field.data_type();
match data_type {
Utf8 | Binary | LargeBinary | LargeUtf8 => create_primitive_array(
reader.next_node(field)?,
data_type,
&[
reader.next_buffer()?,
reader.next_buffer()?,
reader.next_buffer()?,
],
),
FixedSizeBinary(_) => create_primitive_array(
reader.next_node(field)?,
data_type,
&[reader.next_buffer()?, reader.next_buffer()?],
),
List(ref list_field) | LargeList(ref list_field) | Map(ref list_field, _) => {
let list_node = reader.next_node(field)?;
let list_buffers = [reader.next_buffer()?, reader.next_buffer()?];
let values = create_array(reader, list_field)?;
create_list_array(list_node, data_type, &list_buffers, values)
}
FixedSizeList(ref list_field, _) => {
let list_node = reader.next_node(field)?;
let list_buffers = [reader.next_buffer()?];
let values = create_array(reader, list_field)?;
create_list_array(list_node, data_type, &list_buffers, values)
}
Struct(struct_fields) => {
let struct_node = reader.next_node(field)?;
let null_buffer = reader.next_buffer()?;
// read the arrays for each field
let mut struct_arrays = vec![];
// TODO investigate whether just knowing the number of buffers could
// still work
for struct_field in struct_fields {
let child = create_array(reader, struct_field)?;
struct_arrays.push((struct_field.clone(), child));
}
let null_count = struct_node.null_count() as usize;
let struct_array = if null_count > 0 {
// create struct array from fields, arrays and null data
StructArray::from((struct_arrays, null_buffer))
} else {
StructArray::from(struct_arrays)
};
Ok(Arc::new(struct_array))
}
RunEndEncoded(run_ends_field, values_field) => {
let run_node = reader.next_node(field)?;
let run_ends = create_array(reader, run_ends_field)?;
let values = create_array(reader, values_field)?;
let run_array_length = run_node.length() as usize;
let data = ArrayData::builder(data_type.clone())
.len(run_array_length)
.offset(0)
.add_child_data(run_ends.into_data())
.add_child_data(values.into_data())
.build_aligned()?;
Ok(make_array(data))
}
// Create dictionary array from RecordBatch
Dictionary(_, _) => {
let index_node = reader.next_node(field)?;
let index_buffers = [reader.next_buffer()?, reader.next_buffer()?];
let dict_id = field.dict_id().ok_or_else(|| {
ArrowError::ParseError(format!("Field {field} does not have dict id"))
})?;
let value_array = reader.dictionaries_by_id.get(&dict_id).ok_or_else(|| {
ArrowError::ParseError(format!(
"Cannot find a dictionary batch with dict id: {dict_id}"
))
})?;
create_dictionary_array(index_node, data_type, &index_buffers, value_array.clone())
}
Union(fields, mode) => {
let union_node = reader.next_node(field)?;
let len = union_node.length() as usize;
// In V4, union types has validity bitmap
// In V5 and later, union types have no validity bitmap
if reader.version < MetadataVersion::V5 {
reader.next_buffer()?;
}
let type_ids: Buffer = reader.next_buffer()?[..len].into();
let value_offsets = match mode {
UnionMode::Dense => {
let buffer = reader.next_buffer()?;
Some(buffer[..len * 4].into())
}
UnionMode::Sparse => None,
};
let mut children = Vec::with_capacity(fields.len());
let mut ids = Vec::with_capacity(fields.len());
for (id, field) in fields.iter() {
let child = create_array(reader, field)?;
children.push((field.as_ref().clone(), child));
ids.push(id);
}
let array = UnionArray::try_new(&ids, type_ids, value_offsets, children)?;
Ok(Arc::new(array))
}
Null => {
let node = reader.next_node(field)?;
let length = node.length();
let null_count = node.null_count();
if length != null_count {
return Err(ArrowError::SchemaError(format!(
"Field {field} of NullArray has unequal null_count {null_count} and len {length}"
)));
}
let data = ArrayData::builder(data_type.clone())
.len(length as usize)
.offset(0)
.build_aligned()
.unwrap();
// no buffer increases
Ok(Arc::new(NullArray::from(data)))
}
_ => create_primitive_array(
reader.next_node(field)?,
data_type,
&[reader.next_buffer()?, reader.next_buffer()?],
),
}
}
/// Reads the correct number of buffers based on data type and null_count, and creates a
/// primitive array ref
fn create_primitive_array(
field_node: &FieldNode,
data_type: &DataType,
buffers: &[Buffer],
) -> Result<ArrayRef, ArrowError> {
let length = field_node.length() as usize;
let null_buffer = (field_node.null_count() > 0).then_some(buffers[0].clone());
let array_data = match data_type {
Utf8 | Binary | LargeBinary | LargeUtf8 => {
// read 3 buffers: null buffer (optional), offsets buffer and data buffer
ArrayData::builder(data_type.clone())
.len(length)
.buffers(buffers[1..3].to_vec())
.null_bit_buffer(null_buffer)
.build_aligned()?
}
_ if data_type.is_primitive() || matches!(data_type, Boolean | FixedSizeBinary(_)) => {
// read 2 buffers: null buffer (optional) and data buffer
ArrayData::builder(data_type.clone())
.len(length)
.add_buffer(buffers[1].clone())
.null_bit_buffer(null_buffer)
.build_aligned()?
}
t => unreachable!("Data type {:?} either unsupported or not primitive", t),
};
Ok(make_array(array_data))
}
/// Reads the correct number of buffers based on list type and null_count, and creates a
/// list array ref
fn create_list_array(
field_node: &FieldNode,
data_type: &DataType,
buffers: &[Buffer],
child_array: ArrayRef,
) -> Result<ArrayRef, ArrowError> {
let null_buffer = (field_node.null_count() > 0).then_some(buffers[0].clone());
let length = field_node.length() as usize;
let child_data = child_array.into_data();
let builder = match data_type {
List(_) | LargeList(_) | Map(_, _) => ArrayData::builder(data_type.clone())
.len(length)
.add_buffer(buffers[1].clone())
.add_child_data(child_data)
.null_bit_buffer(null_buffer),
FixedSizeList(_, _) => ArrayData::builder(data_type.clone())
.len(length)
.add_child_data(child_data)
.null_bit_buffer(null_buffer),
_ => unreachable!("Cannot create list or map array from {:?}", data_type),
};
Ok(make_array(builder.build_aligned()?))
}
/// Reads the correct number of buffers based on list type and null_count, and creates a
/// list array ref
fn create_dictionary_array(
field_node: &FieldNode,
data_type: &DataType,
buffers: &[Buffer],
value_array: ArrayRef,
) -> Result<ArrayRef, ArrowError> {
if let Dictionary(_, _) = *data_type {
let null_buffer = (field_node.null_count() > 0).then_some(buffers[0].clone());
let builder = ArrayData::builder(data_type.clone())
.len(field_node.length() as usize)
.add_buffer(buffers[1].clone())
.add_child_data(value_array.into_data())
.null_bit_buffer(null_buffer);
Ok(make_array(builder.build_aligned()?))
} else {
unreachable!("Cannot create dictionary array from {:?}", data_type)
}
}
/// State for decoding arrays from an encoded [`RecordBatch`]
struct ArrayReader<'a> {
/// Decoded dictionaries indexed by dictionary id
dictionaries_by_id: &'a HashMap<i64, ArrayRef>,
/// Optional compression codec
compression: Option<CompressionCodec>,
/// The format version
version: MetadataVersion,
/// The raw data buffer
data: &'a Buffer,
/// The fields comprising this array
nodes: VectorIter<'a, FieldNode>,
/// The buffers comprising this array
buffers: VectorIter<'a, crate::Buffer>,
}
impl<'a> ArrayReader<'a> {
fn next_buffer(&mut self) -> Result<Buffer, ArrowError> {
read_buffer(self.buffers.next().unwrap(), self.data, self.compression)
}
fn skip_buffer(&mut self) {
self.buffers.next().unwrap();
}
fn next_node(&mut self, field: &Field) -> Result<&'a FieldNode, ArrowError> {
self.nodes.next().ok_or_else(|| {
ArrowError::SchemaError(format!(
"Invalid data for schema. {} refers to node not found in schema",
field
))
})
}
fn skip_field(&mut self, field: &Field) -> Result<(), ArrowError> {
self.next_node(field)?;
match field.data_type() {
Utf8 | Binary | LargeBinary | LargeUtf8 => {
for _ in 0..3 {
self.skip_buffer()
}
}
FixedSizeBinary(_) => {
self.skip_buffer();
self.skip_buffer();
}
List(list_field) | LargeList(list_field) | Map(list_field, _) => {
self.skip_buffer();
self.skip_buffer();
self.skip_field(list_field)?;
}
FixedSizeList(list_field, _) => {
self.skip_buffer();
self.skip_field(list_field)?;
}
Struct(struct_fields) => {
self.skip_buffer();
// skip for each field
for struct_field in struct_fields {
self.skip_field(struct_field)?
}
}
RunEndEncoded(run_ends_field, values_field) => {
self.skip_field(run_ends_field)?;
self.skip_field(values_field)?;
}
Dictionary(_, _) => {
self.skip_buffer(); // Nulls
self.skip_buffer(); // Indices
}
Union(fields, mode) => {
self.skip_buffer(); // Nulls
match mode {
UnionMode::Dense => self.skip_buffer(),
UnionMode::Sparse => {}
};
for (_, field) in fields.iter() {
self.skip_field(field)?
}
}
Null => {} // No buffer increases
_ => {
self.skip_buffer();
self.skip_buffer();
}
};
Ok(())
}
}
/// Creates a record batch from binary data using the `crate::RecordBatch` indexes and the `Schema`
pub fn read_record_batch(
buf: &Buffer,
batch: crate::RecordBatch,
schema: SchemaRef,
dictionaries_by_id: &HashMap<i64, ArrayRef>,
projection: Option<&[usize]>,
metadata: &MetadataVersion,
) -> Result<RecordBatch, ArrowError> {
let buffers = batch.buffers().ok_or_else(|| {
ArrowError::IpcError("Unable to get buffers from IPC RecordBatch".to_string())
})?;
let field_nodes = batch.nodes().ok_or_else(|| {
ArrowError::IpcError("Unable to get field nodes from IPC RecordBatch".to_string())
})?;
let batch_compression = batch.compression();
let compression = batch_compression
.map(|batch_compression| batch_compression.codec().try_into())
.transpose()?;
let mut reader = ArrayReader {
dictionaries_by_id,
compression,
version: *metadata,
data: buf,
nodes: field_nodes.iter(),
buffers: buffers.iter(),
};
let options = RecordBatchOptions::new().with_row_count(Some(batch.length() as usize));
if let Some(projection) = projection {
let mut arrays = vec![];
// project fields
for (idx, field) in schema.fields().iter().enumerate() {
// Create array for projected field
if let Some(proj_idx) = projection.iter().position(|p| p == &idx) {
let child = create_array(&mut reader, field)?;
arrays.push((proj_idx, child));
} else {
reader.skip_field(field)?;
}
}
arrays.sort_by_key(|t| t.0);
RecordBatch::try_new_with_options(
Arc::new(schema.project(projection)?),
arrays.into_iter().map(|t| t.1).collect(),
&options,
)
} else {
let mut children = vec![];
// keep track of index as lists require more than one node
for field in schema.fields() {
let child = create_array(&mut reader, field)?;
children.push(child);
}
RecordBatch::try_new_with_options(schema, children, &options)
}
}
/// Read the dictionary from the buffer and provided metadata,
/// updating the `dictionaries_by_id` with the resulting dictionary
pub fn read_dictionary(
buf: &Buffer,
batch: crate::DictionaryBatch,
schema: &Schema,
dictionaries_by_id: &mut HashMap<i64, ArrayRef>,
metadata: &crate::MetadataVersion,
) -> Result<(), ArrowError> {
if batch.isDelta() {
return Err(ArrowError::InvalidArgumentError(
"delta dictionary batches not supported".to_string(),
));
}
let id = batch.id();
let fields_using_this_dictionary = schema.fields_with_dict_id(id);
let first_field = fields_using_this_dictionary.first().ok_or_else(|| {
ArrowError::InvalidArgumentError("dictionary id not found in schema".to_string())
})?;
// As the dictionary batch does not contain the type of the
// values array, we need to retrieve this from the schema.
// Get an array representing this dictionary's values.
let dictionary_values: ArrayRef = match first_field.data_type() {
DataType::Dictionary(_, ref value_type) => {
// Make a fake schema for the dictionary batch.
let value = value_type.as_ref().clone();
let schema = Schema::new(vec![Field::new("", value, true)]);
// Read a single column
let record_batch = read_record_batch(
buf,
batch.data().unwrap(),
Arc::new(schema),
dictionaries_by_id,
None,
metadata,
)?;
Some(record_batch.column(0).clone())
}
_ => None,
}
.ok_or_else(|| {
ArrowError::InvalidArgumentError("dictionary id not found in schema".to_string())
})?;
// We don't currently record the isOrdered field. This could be general
// attributes of arrays.
// Add (possibly multiple) array refs to the dictionaries array.
dictionaries_by_id.insert(id, dictionary_values.clone());
Ok(())
}
#[derive(Clone, Debug)]
struct BufferReader {
inter: Buffer,
}
impl AsRef<[u8]> for BufferReader {
fn as_ref(&self) -> &[u8] {
&self.inter
}
}
/// Arrow File reader
pub struct FileReader<R: Read + Seek> {
/// Buffered file reader that supports reading and seeking
reader: BufReader<R>,
/// Optional Buffer for when we want to map the underlying data without copying
buffer: Option<BufferReader>,
/// The schema that is read from the file header
schema: SchemaRef,
/// The blocks in the file
///
/// A block indicates the regions in the file to read to get data
blocks: Vec<crate::Block>,
/// A counter to keep track of the current block that should be read
current_block: usize,
/// The total number of blocks, which may contain record batches and other types
total_blocks: usize,
/// Optional dictionaries for each schema field.
///
/// Dictionaries may be appended to in the streaming format.
dictionaries_by_id: HashMap<i64, ArrayRef>,
/// Metadata version
metadata_version: crate::MetadataVersion,
/// User defined metadata
custom_metadata: HashMap<String, String>,
/// Optional projection and projected_schema
projection: Option<(Vec<usize>, Schema)>,
}
impl<R: Read + Seek> fmt::Debug for FileReader<R> {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> std::result::Result<(), fmt::Error> {
f.debug_struct("FileReader<R>")
.field("reader", &"BufReader<..>")
.field("buffer", &"Buffer<..>")
.field("schema", &self.schema)
.field("blocks", &self.blocks)
.field("current_block", &self.current_block)
.field("total_blocks", &self.total_blocks)
.field("dictionaries_by_id", &self.dictionaries_by_id)
.field("metadata_version", &self.metadata_version)
.field("projection", &self.projection)
.finish()
}
}
impl FileReader<Cursor<BufferReader>> {
pub fn try_new_map(buffer: Buffer, projection: Option<Vec<usize>>) -> Result<Self, ArrowError> {
let buffer = BufferReader { inter: buffer };
let cursor = Cursor::new(buffer.clone());
Self::try_new_inter(cursor, projection, Some(buffer))
}
}
impl<R: Read + Seek> FileReader<R> {
/// Try to create a new file reader
///
/// Returns errors if the file does not meet the Arrow Format header and footer
/// requirements
pub fn try_new(reader: R, projection: Option<Vec<usize>>) -> Result<Self, ArrowError> {
Self::try_new_inter(reader, projection, None)
}
/// Try to create a new file reader
///
/// Returns errors if the file does not meet the Arrow Format header and footer
/// requirements
///
/// If a buffer is provided, then the reader needs to be a io::Cursor wrapped around the buffer
fn try_new_inter(
reader: R,
projection: Option<Vec<usize>>,
buffer: Option<BufferReader>,
) -> Result<Self, ArrowError> {
let mut reader = BufReader::new(reader);
// check if header and footer contain correct magic bytes
// check if header and footer contain correct magic bytes
let mut magic_buffer: [u8; 6] = [0; 6];
reader.read_exact(&mut magic_buffer)?;
if magic_buffer != super::ARROW_MAGIC {
return Err(ArrowError::ParseError(
"Arrow file does not contain correct header".to_string(),
));
}
reader.seek(SeekFrom::End(-6))?;
reader.read_exact(&mut magic_buffer)?;
if magic_buffer != super::ARROW_MAGIC {
return Err(ArrowError::ParseError(
"Arrow file does not contain correct footer".to_string(),
));
}
// read footer length
let mut footer_size: [u8; 4] = [0; 4];
reader.seek(SeekFrom::End(-10))?;
reader.read_exact(&mut footer_size)?;
let footer_len = i32::from_le_bytes(footer_size);
// read footer
let mut footer_data = vec![0; footer_len as usize];
reader.seek(SeekFrom::End(-10 - footer_len as i64))?;
reader.read_exact(&mut footer_data)?;
let footer = crate::root_as_footer(&footer_data[..]).map_err(|err| {
ArrowError::ParseError(format!("Unable to get root as footer: {err:?}"))
})?;
let blocks = footer.recordBatches().ok_or_else(|| {
ArrowError::ParseError("Unable to get record batches from IPC Footer".to_string())
})?;
let total_blocks = blocks.len();
let ipc_schema = footer.schema().unwrap();
let schema = crate::convert::fb_to_schema(ipc_schema);
let mut custom_metadata = HashMap::new();
if let Some(fb_custom_metadata) = footer.custom_metadata() {
for kv in fb_custom_metadata.into_iter() {
custom_metadata.insert(
kv.key().unwrap().to_string(),
kv.value().unwrap().to_string(),
);
}
}
// Create an array of optional dictionary value arrays, one per field.
let mut dictionaries_by_id = HashMap::new();
if let Some(dictionaries) = footer.dictionaries() {
for block in dictionaries {
// read length from end of offset
let mut message_size: [u8; 4] = [0; 4];
reader.seek(SeekFrom::Start(block.offset() as u64))?;
reader.read_exact(&mut message_size)?;
if message_size == CONTINUATION_MARKER {
reader.read_exact(&mut message_size)?;
}
let footer_len = i32::from_le_bytes(message_size);
let mut block_data = vec![0; footer_len as usize];
reader.read_exact(&mut block_data)?;
let message = crate::root_as_message(&block_data[..]).map_err(|err| {
ArrowError::ParseError(format!("Unable to get root as message: {err:?}"))
})?;
match message.header_type() {
crate::MessageHeader::DictionaryBatch => {
let batch = message.header_as_dictionary_batch().unwrap();
let buf = if let Some(buffer) = &buffer {
// Don't need to check compression as dictionaries aren't compressed.
buffer.inter.slice_with_length(
block.offset() as usize + block.metaDataLength() as usize,
message.bodyLength() as usize,
)
} else {
// read the block that makes up the dictionary batch into a buffer
let mut buf =
MutableBuffer::from_len_zeroed(message.bodyLength() as usize);
reader.seek(SeekFrom::Start(
block.offset() as u64 + block.metaDataLength() as u64,
))?;
reader.read_exact(&mut buf)?;
buf.into()
};
read_dictionary(
&buf,
batch,
&schema,
&mut dictionaries_by_id,
&message.version(),
)?;
}
t => {
return Err(ArrowError::ParseError(format!(
"Expecting DictionaryBatch in dictionary blocks, found {t:?}."
)));
}
}
}
}
let projection = match projection {
Some(projection_indices) => {
let schema = schema.project(&projection_indices)?;
Some((projection_indices, schema))
}
_ => None,
};
Ok(Self {
reader,
buffer,
schema: Arc::new(schema),
blocks: blocks.iter().copied().collect(),
current_block: 0,
total_blocks,
dictionaries_by_id,
metadata_version: footer.version(),
custom_metadata,
projection,
})
}
/// Return user defined customized metadata
pub fn custom_metadata(&self) -> &HashMap<String, String> {
&self.custom_metadata
}
/// Return the number of batches in the file
pub fn num_batches(&self) -> usize {
self.total_blocks
}
/// Return the schema of the file
pub fn schema(&self) -> SchemaRef {
self.schema.clone()
}
/// Read a specific record batch
///
/// Sets the current block to the index, allowing random reads
pub fn set_index(&mut self, index: usize) -> Result<(), ArrowError> {
if index >= self.total_blocks {
Err(ArrowError::InvalidArgumentError(format!(
"Cannot set batch to index {} from {} total batches",
index, self.total_blocks
)))
} else {
self.current_block = index;
Ok(())
}
}
fn maybe_next(&mut self) -> Result<Option<RecordBatch>, ArrowError> {
let block = self.blocks[self.current_block];
self.current_block += 1;
// read length
self.reader.seek(SeekFrom::Start(block.offset() as u64))?;
let mut meta_buf = [0; 4];
self.reader.read_exact(&mut meta_buf)?;
if meta_buf == CONTINUATION_MARKER {
// continuation marker encountered, read message next
self.reader.read_exact(&mut meta_buf)?;
}
let meta_len = i32::from_le_bytes(meta_buf);
let mut block_data = vec![0; meta_len as usize];
self.reader.read_exact(&mut block_data)?;
let message = crate::root_as_message(&block_data[..]).map_err(|err| {
ArrowError::ParseError(format!("Unable to get root as footer: {err:?}"))
})?;
// some old test data's footer metadata is not set, so we account for that
if self.metadata_version != crate::MetadataVersion::V1
&& message.version() != self.metadata_version
{
return Err(ArrowError::IpcError(
"Could not read IPC message as metadata versions mismatch".to_string(),
));
}
match message.header_type() {
crate::MessageHeader::Schema => Err(ArrowError::IpcError(
"Not expecting a schema when messages are read".to_string(),
)),
crate::MessageHeader::RecordBatch => {
let batch = message.header_as_record_batch().ok_or_else(|| {
ArrowError::IpcError("Unable to read IPC message as record batch".to_string())
})?;
let buf = if let Some(buffer) = &self.buffer {
// Don't need to check compression as if it is compressed it will be read into memory.
buffer.inter.slice_with_length(
block.offset() as usize + block.metaDataLength() as usize,
message.bodyLength() as usize,
)
} else {
// read the block that makes up the batch into a buffer
let mut buf = MutableBuffer::from_len_zeroed(message.bodyLength() as usize);
self.reader.seek(SeekFrom::Start(
block.offset() as u64 + block.metaDataLength() as u64,
))?;
self.reader.read_exact(&mut buf)?;
buf.into()
};
read_record_batch(
&buf,
batch,
self.schema(),
&self.dictionaries_by_id,
self.projection.as_ref().map(|x| x.0.as_ref()),
&message.version(),
)
.map(Some)
}
crate::MessageHeader::NONE => Ok(None),
t => Err(ArrowError::InvalidArgumentError(format!(
"Reading types other than record batches not yet supported, unable to read {t:?}"
))),
}
}
/// Gets a reference to the underlying reader.
///
/// It is inadvisable to directly read from the underlying reader.
pub fn get_ref(&self) -> &R {
self.reader.get_ref()
}
/// Gets a mutable reference to the underlying reader.
///
/// It is inadvisable to directly read from the underlying reader.
pub fn get_mut(&mut self) -> &mut R {
self.reader.get_mut()
}
}
impl<R: Read + Seek> Iterator for FileReader<R> {
type Item = Result<RecordBatch, ArrowError>;
fn next(&mut self) -> Option<Self::Item> {
// get current block
if self.current_block < self.total_blocks {
self.maybe_next().transpose()
} else {
None
}
}
}
impl<R: Read + Seek> RecordBatchReader for FileReader<R> {
fn schema(&self) -> SchemaRef {
self.schema.clone()
}
}
/// Arrow Stream reader
pub struct StreamReader<R: Read> {
/// Stream reader
reader: R,
/// The schema that is read from the stream's first message
schema: SchemaRef,
/// Optional dictionaries for each schema field.
///
/// Dictionaries may be appended to in the streaming format.
dictionaries_by_id: HashMap<i64, ArrayRef>,
/// An indicator of whether the stream is complete.
///
/// This value is set to `true` the first time the reader's `next()` returns `None`.
finished: bool,
/// Optional projection
projection: Option<(Vec<usize>, Schema)>,
}
impl<R: Read> fmt::Debug for StreamReader<R> {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> std::result::Result<(), fmt::Error> {
f.debug_struct("StreamReader<R>")
.field("reader", &"BufReader<..>")
.field("schema", &self.schema)
.field("dictionaries_by_id", &self.dictionaries_by_id)
.field("finished", &self.finished)
.field("projection", &self.projection)
.finish()
}
}
impl<R: Read> StreamReader<BufReader<R>> {
/// Try to create a new stream reader with the reader wrapped in a BufReader
///
/// The first message in the stream is the schema, the reader will fail if it does not
/// encounter a schema.
/// To check if the reader is done, use `is_finished(self)`
pub fn try_new(reader: R, projection: Option<Vec<usize>>) -> Result<Self, ArrowError> {
Self::try_new_unbuffered(BufReader::new(reader), projection)
}
}
impl<R: Read> StreamReader<R> {
/// Try to create a new stream reader but do not wrap the reader in a BufReader.
///
/// Unless you need the StreamReader to be unbuffered you likely want to use `StreamReader::try_new` instead.
pub fn try_new_unbuffered(
mut reader: R,
projection: Option<Vec<usize>>,
) -> Result<StreamReader<R>, ArrowError> {
// determine metadata length
let mut meta_size: [u8; 4] = [0; 4];
reader.read_exact(&mut meta_size)?;
let meta_len = {
// If a continuation marker is encountered, skip over it and read
// the size from the next four bytes.
if meta_size == CONTINUATION_MARKER {
reader.read_exact(&mut meta_size)?;
}
i32::from_le_bytes(meta_size)
};
let mut meta_buffer = vec![0; meta_len as usize];
reader.read_exact(&mut meta_buffer)?;
let message = crate::root_as_message(meta_buffer.as_slice()).map_err(|err| {
ArrowError::ParseError(format!("Unable to get root as message: {err:?}"))
})?;
// message header is a Schema, so read it
let ipc_schema: crate::Schema = message.header_as_schema().ok_or_else(|| {
ArrowError::ParseError("Unable to read IPC message as schema".to_string())
})?;
let schema = crate::convert::fb_to_schema(ipc_schema);
// Create an array of optional dictionary value arrays, one per field.
let dictionaries_by_id = HashMap::new();
let projection = match projection {
Some(projection_indices) => {
let schema = schema.project(&projection_indices)?;
Some((projection_indices, schema))
}
_ => None,
};
Ok(Self {
reader,
schema: Arc::new(schema),
finished: false,
dictionaries_by_id,
projection,
})
}
/// Return the schema of the stream
pub fn schema(&self) -> SchemaRef {
self.schema.clone()
}
/// Check if the stream is finished
pub fn is_finished(&self) -> bool {
self.finished
}
fn maybe_next(&mut self) -> Result<Option<RecordBatch>, ArrowError> {
if self.finished {
return Ok(None);
}
// determine metadata length
let mut meta_size: [u8; 4] = [0; 4];
match self.reader.read_exact(&mut meta_size) {
Ok(()) => (),
Err(e) => {
return if e.kind() == std::io::ErrorKind::UnexpectedEof {
// Handle EOF without the "0xFFFFFFFF 0x00000000"
// valid according to:
// https://arrow.apache.org/docs/format/Columnar.html#ipc-streaming-format
self.finished = true;
Ok(None)
} else {
Err(ArrowError::from(e))
};
}
}
let meta_len = {
// If a continuation marker is encountered, skip over it and read
// the size from the next four bytes.
if meta_size == CONTINUATION_MARKER {
self.reader.read_exact(&mut meta_size)?;
}
i32::from_le_bytes(meta_size)
};
if meta_len == 0 {
// the stream has ended, mark the reader as finished
self.finished = true;
return Ok(None);
}