[USER ISSUE] Cannot install codalab-cli: failed to build indexed-gzip

[lefterav]

Describe the bug

Whenever I am trying to install Codalab-cli in a venv I get the following error

Building wheels for collected packages: indexed-gzip
  Building wheel for indexed-gzip (setup.py) ... error
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [29 lines of output]
      indexed_gzip setup
        have_cython: False (if True, modules will be cythonized, otherwise pre-cythonized C files are assumed to be present)
        have_numpy:  False (if True, test modules will be compiled)
        ZLIB_HOME:   None (if set, ZLIB sources are compiled into the indexed_gzip extension)
        testing:     False (if True, code will be compiled with line tracing enabled)
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.linux-x86_64-cpython-310
      creating build/lib.linux-x86_64-cpython-310/indexed_gzip
      copying indexed_gzip/__init__.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip
      creating build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/benchmark.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/conftest.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/test_indexed_gzip_threading.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/__init__.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/test_nibabel_integration.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/test_zran.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/test_indexed_gzip.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      copying indexed_gzip/tests/__main__.py -> build/lib.linux-x86_64-cpython-310/indexed_gzip/tests
      running build_ext
      building 'indexed_gzip.indexed_gzip' extension
      creating build/temp.linux-x86_64-cpython-310
      creating build/temp.linux-x86_64-cpython-310/indexed_gzip
      x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iindexed_gzip -I/home/elav01/PycharmProjects/wmt23metrics/venv/include -I/usr/include/python3.10 -c indexed_gzip/indexed_gzip.c -o build/temp.linux-x86_64-cpython-310/indexed_gzip/indexed_gzip.o -Wall -Wno-unused-function
      cc1: fatal error: indexed_gzip/indexed_gzip.c: No such file or directory
      compilation terminated.
      error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for indexed-gzip
  Running setup.py clean for indexed-gzip
  error: subprocess-exited-with-error
  
  × python setup.py clean did not run successfully.
  │ exit code: 1
  ╰─> [11 lines of output]
      indexed_gzip setup
        have_cython: False (if True, modules will be cythonized, otherwise pre-cythonized C files are assumed to be present)
        have_numpy:  False (if True, test modules will be compiled)
        ZLIB_HOME:   None (if set, ZLIB sources are compiled into the indexed_gzip extension)
        testing:     False (if True, code will be compiled with line tracing enabled)
      usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
         or: setup.py --help [cmd1 cmd2 ...]
         or: setup.py --help-commands
         or: setup.py cmd --help
      
      error: option --all not recognized
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed cleaning build dir for indexed-gzip
Failed to build indexed-gzip

I have already tried downloading and compiling the latest version of indexed-gzip from github. The installation was successful but this didn't solve the problem for installing codalab-cli

Codalab Information

• lefterav:
• UUID of worksheet where problem occurred:
• UUID of problem bundle (please don't delete):
• Error message received from Codalab (if applicable): ERROR: Failed cleaning build dir for indexed-gzip
• OS (if on CLI): Ubuntu 22.04
• Codalab CLI Version (if on CLI): latest on pip
• Browser (if on Web);

[epicfaace]

Thanks for reporting! indexed-gzip should have wheels built I think... looking into it...

[pauldmccarthy]

Hi @lefterav, How are you trying to install codalab, and what versions of pip and setuptools are you using?

[lefterav]

I am using pip 23.0.1 and setuptools 67.4.0 . I am installing codalab im a virtualenv of Python 10 by using the command pip install codalab -U as advised in the quistart documentation.

These are the defaults now in Ubuntu 22.04