README.md

mfd_sr_mags

Repository for phylogenetic overview of metagenome assembled genomes (MAGs) recovered during the Microflora Danica (MFD) project.

Content overview

• Code examples for short-read MAG recovery
• R code for plotting the joint GTDB and MFD MAG tree

Citation

Microflora Danica: the atlas of Danish environmental microbiomes., CM Singleton, TBN Jensen, F Delogu, EA Sørensen, VR Jørgensen, SM Karst, Y Yang, KS Knudsen, M Sereika, F Petriglieri, S Knutsson, SM Dall, RH Kirkegaard, JM Kristensen, BJ Woodcroft, DR Speth, STN Aroney, The Microflora Danica Consortium, M Wagner, MKD Dueholm, PH Nielsen, M Albertsen., bioRxiv 2024.06.27.600767; doi: https://doi.org/10.1101/2024.06.27.600767