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ChangeLog
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ChangeLog
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2020-06-05 Li Jianfeng <[email protected]>
* auto load http_proxy or https_proxy
* fix defuse genomeVersionConvertor
2020-04-29 Li Jianfeng <[email protected]>
* support covid19 api
2020-04-22 Li Jianfeng <[email protected]>
* bio.tools API support --from and --size flag
2020-04-21 Li Jianfeng <[email protected]>
* support URL with multi-thread request
* default support resume
* --ignore => --resume
2020-04-20 Li Jianfeng <[email protected]>
* support custom links
* rename key subcmd to i
2020-03-31 Li Jianfeng <[email protected]>
* new '--print-meta' flag in `bget doi`
* new '--print-crossref' flag in `bget doi`
* new '--xml2json' flag in `bget api`
* add `crf` subcommand in `bget api`
* expand suported doi list
2020-03-28 Li Jianfeng <[email protected]>
* fix peerj doi query
* add initColley function in spider
2020-03-27 Li Jianfeng <[email protected]>
* support 10.35946, 10.20882, 10.17712, 10.17645, 10.14309, 10.7326,
10.7189, 10.7185, 10.5853, 10.5694, 10.5670, 10.5598, 10.4158,
10.4155, 10.4110, 10.3982, 10.3835, 10.3386, 10.3348, 10.3238,
10.3233, 10.3168, 10.2807, 10.2471, 10.2340, 10.2136, 10.2113,
10.2105, 10.1681, 10.1556, 10.1513, 10.1373, 10.1289, 10.1287,
10.1257, 10.1246, 10.1210, 10.1176, 10.1137, 10.1130, 10.1107,
10.1096, 10.1094, 10.1042
* add functions (AddPdfSpider, AddPdfplusSpider, DirectSpider,
AddPdfplusWithSupplSpider, AddPdfWithSupplSpider, AddLastPdfSpider,
AddDownloadSpider, KoreaMedSpider, ReplaceHtmlSpider, and
RetriveRedirectLink) in spider/universal.go
* mgrast api add library, proj, and sample command
2020-03-26 Li Jianfeng <[email protected]>
* support 10.3233 and 10.7185
* add r in `bget key`
2020-03-25 Li Jianfeng <[email protected]>
* support bget api mgrast (anno, compute, darkmatter, download modules)
* support 10.1152, 10.1098, 10.1175, 10.21037, 10.2196, 10.1055,
10.1086, 10.1145, 10.2217, 10.7150
2020-03-24 Li Jianfeng <[email protected]>
* support journals.lww.com (10.1097)
* support journals.sagepub.com (10.1177)
* support www.liebertpub.com (10.1089)
* support ard.bmj.com, adc.bmj.com, casereports.bmj.com, ebm.bmj.com,
gh.bmj.com, informatics.bmj.com, innovations.bmj.com,
bmjleader.bmj.com, militaryhealth.bmj.com, neurologyopen.bmj.com,
nutrition.bmj.com, bmjopen.bmj.com, drc.bmj.com,
bmjopengastro.bmj.com, bmjophth.bmj.com, qir.bmj.com,
bmjopenrespres.bmj.com, openscience.bmj.com, bmjopensem.bmj.com,
qualitysafety.bmj.com, bmjpaedsopen.bmj.com, srh.bmj.com,
stel.bmj.com, spcare.bmj.com, sit.bmj.com, bjo.bmj.com, bjsm.bmj.com,
considerations.bmj.com, dtb.bmj.com, ep.bmj.com, emj.bmj.com,
esmoopen.bmj.com, ejhp.bmj.com, ebmh.bmj.com, ebn.bmj.com,
fmch.bmj.com, fn.bmj.com, fg.bmj.com, gpsych.bmj.com, heart.bmj.com,
heartasia.bmj.com, injuryprevention.bmj.com, inpractice.bmj.com,
ihj.bmj.com, ijgc.bmj.com, jitc.bmj.com, jcp.bmj.com, jech.bmj.com,
jim.bmj.com, jisakos.bmj.com, jme.bmj.com, jmg.bmj.com, jnnp.bmj.com,
jnis.bmj.com, lupus.bmj.com, mh.bmj.com, oem.bmj.com,
openheart.bmj.com, pmj.bmj.com, pn.bmj.com, rapm.bmj.com,
rmdopen.bmj.com, sti.bmj.com, svn.bmj.com, thorax.bmj.com,
tobaccocontrol.bmj.com, tsaco.bmj.com, veterinaryrecord.bmj.com,
vetrecordcasereports.bmj.com, vetrecordopen.bmj.com, wjps.bmj.com
(10.1136)
2020-03-23 Li Jianfeng <[email protected]>
* support cellimagelibrary.org (10.7295)
* support ieeexplore.ieee.org (10.1109)
* add GWAS Catalog db links: `bget key db/gwas-catalog -n`
* rename --pmc flag to --enable-pmc in `bget doi`
* add --enable-scihub flag in `bget doi`
2020-01-18 Li Jianfeng <[email protected]>
* --task-id add -k
* move convert and text-mining function to bioctl and bioextr pkg
* support git version parse in `bget key` tools
2020-01-16 Li Jianfeng <[email protected]>
* improve the log output
* support 'bget key -a' output to json format
2020-01-11 Li Jianfeng <[email protected]>
* support clinicaltrials.gov API
* support bio.tools API
* add --extra flag in api
* add db/clingov: ClinicalTrials.gov/AllAPIJSON.zip
2020-01-10 Li Jianfeng <[email protected]>
* hide global flags in the rootCmd
* integrate github subcmd in url subcmd
* integrate api subcmd
2019-12-03 Li Jianfeng <[email protected]>
* add "--only-assets" in github subcmd
2019-12-01 Li Jianfeng <[email protected]>
* add pubmed github links in key subcmd
* parse key subcmd with case-insensitive and "_" => "-"
* add bitbucket version API
* support github assets in key subcmd
* add github subcmd
2019-11-29 Li Jianfeng <[email protected]>
* add more db items in key subcmd
* set default version var
2019-11-29 Li Jianfeng <[email protected]>
* classify items in key subcmd
2019-11-28 Li Jianfeng <[email protected]>
* add wdl workflows in 'bget key' mode
* add openbiox/awosome-bioinformatics github links
2019-11-19 Li Jianfeng <[email protected]>
* support www.sciencedirect.com supplementary files
2019-11-09 Li Jianfeng <[email protected]>
* support pubs.acs.org (test: 10.1021/acs.chemrev.9b00372)
* support jamanetwork.com (test: 10.1001/jama.2019.17379)
* support pubs.rsc.org (test: 10.1039/C9CS00377K)
* support journals.aps.org (test: 10.1103/RevModPhys.91.045001)
* support www.annualreviews.org (test: 10.1146/annurev-astro-091918-104446)
2019-11-08 Li Jianfeng <[email protected]>
* support figshare.com (test: 10.6084/m9.figshare.6634136)
2019-11-07 Li Jianfeng <[email protected]>
* update annovar pool
* support DIABETES, DEVELOPMENT, and Microbial Genomics via UniversalSpider
* support OncoImmunology (update TandfonlineSpider)
* support Stem Cells via WileyComSpider
2019-11-06 Li Jianfeng <[email protected]>
* support gut.bmj.com and cancerimmunolres.aacrjournals.org
2019-10-22 Li Jianfeng <[email protected]>
* support doi 10.1136, 10.1164
2019-10-14 Li Jianfeng <[email protected]>
* support the GEO GSM number to query SRA and Supplementary file
2019-9-04 Li Jianfeng <[email protected]>
* support pyega3
2019-9-01 Li Jianfeng <[email protected]>
* support --pmc try PMC database
* add access of autopsyandcasereports.org, www.dovepress.com,
www.kosuyoluheartjournal.com, www.ejcrim.com
2019-8-30 Li Jianfeng <[email protected]>
* add --proxy, --full-text and --suppl flags
* extract codes
* support retries
2019-8-25 Li Jianfeng <[email protected]>
* support to export SRA run table and list (from GEO entry)
2019-8-24 Li Jianfeng <[email protected]>
* add bget seq subcmd to access TCGA and dbGAP files
* rename bget subcmd key to url-key
* support GEO files download
2019-8-22 Li Jianfeng <[email protected]>
* support --uncompress and add 80+ GitHub URLs
* support table and json format key versions
2019-8-19 Li Jianfeng <[email protected]>
* support AacrJournals and Ahajournals
* support Sciencedirect supp
* support Nejm and WileyCom and add chromedp demo
* support OupCom, Embopress, Ascopubs, Haematologica, BloodJournal, and GenomeRes
* support Frontiersin and Peerj
2019-8-16 Li Jianfeng <[email protected]>
* support CNS, biorxiv, biomedcentral and plos
2019-8-15 Li Jianfeng <[email protected]>
* suuport zenodo doi parse and files download
2019-8-14 Li Jianfeng <[email protected]>
* support "key@version #release" parse
2019-8-13 Li Jianfeng <[email protected]>
* initial commit