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Error while running master as local #58

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dikshachaudhary opened this issue Nov 3, 2019 · 0 comments
Open

Error while running master as local #58

dikshachaudhary opened this issue Nov 3, 2019 · 0 comments

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@dikshachaudhary
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When I run the command:
spark-submit --class com.github.sparkbwa.SparkBWA --master local
--driver-memory 1500m --executor-memory 1g --executor-cores 2 --verbose
--num-executors 1 /hdd/diksha/SparkBWA-0.2.jar -m -r -s --index /hdd/diksha/hg38 -n 1
/user/dreamlab/diksha_sample/1.fastq /user/dreamlab/diksha_sample/
I get the following error:
java.io.FileNotFoundException: File does not exist: /user/dreamlab/diksha_sample/1.fastq

The file was present on that path before running the above command. After the command is run, the file from the path gets deleted and I get the error- 'file not found'.

How to deal with the issue?

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