env.yml

# Creates a conda environment named "r3py3".
#
# Install and update this environment with
# conda env update -f env.yml --prune
#
# Uses conda-forge channel whenever possible to avoid the multiple-channel
# mismatch problem.
#   See https://conda-forge.org/docs/user/tipsandtricks.html
name: r3py3
channels:
  - conda-forge
  - r
  - defaults
dependencies:
  - python=3.7.10  # TensorFlow v1.15 sadly does not support Python 3.8
  - cartopy=0.18.0
  - earthengine-api=0.1.236
  - flake8=3.9.1
  - geopandas=0.7.0
  - jupyter_contrib_nbextensions=0.5.1
  - jupyterlab=3.0.15
  - matplotlib=3.4.1
  - mypy=0.812
  - nb_conda=2.2.1
  - numpy=1.20.2
  - pandas=1.2.4
  - pillow=8.1.2
  - scikit-learn=0.24.2
  - scipy=1.6.3
  - seaborn=0.10.1
  - tqdm=4.60.0
  # - tensorflow=1.15.*  # for CPU
  - tensorflow-gpu=1.15.*  # for GPU support
  - conda-forge::r-base=3.6.3  # start of R and R packages
  - conda-forge::r-data.table=1.12.8
  - conda-forge::r-dplyr=0.8.5
  - conda-forge::r-ggplot2=3.3.0
  - conda-forge::r-tidyr=1.0.2
  - conda-forge::r-reshape2=1.4.4
  - conda-forge::r-rcolorbrewer=1.1_2  # this and onwards are unneeded
  - conda-forge::r-colorspace=1.4_1
  - r::r-searchtrees=0.5.2
  - conda-forge::r-extrafont=0.17
  - conda-forge::r-ggthemes=4.2.0
  - conda-forge::r-broom=0.5.5
  - conda-forge::r-gridextra=2.3
  - conda-forge::r-jcolors=0.0.4
  - conda-forge::r-lazyeval=0.2.2
  - conda-forge::r-lfe=2.8_5
  - conda-forge::r-png=0.1_7
  - conda-forge::r-raster=3.0_12
  - conda-forge::r-rastervis=0.47
  - conda-forge::r-rgdal=1.4_8
  - conda-forge::r-rgeos=0.5_2
  - conda-forge::r-scales=1.1.0
  - conda-forge::r-sf=0.9_1
  - conda-forge::r-sp=1.4_1
  - conda-forge::r-stringi  # needed for r-reshape2
  - conda-forge::r-matrix=1.2_18  # needed for r-lfe
  - conda-forge::r-kernsmooth=2.23_16  # needed for r-sf