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Quartet DSeQC Report

This Quartet quality control pipeline evaluate the performance of reads quality and variant calling quality.

How to run Quartet DSeQC Report

See more details on QDP Docs.

Standalone Mode

Prerequisite

  • Bash
  • Python3 >= 3.7
  • virtualenv
  • pip3

Installation

# Clone the repo
git clone https://github.com/chinese-quartet/quartet-dseqc-report

cd quartet-dseqc-report

# Build the environment and compile the quartet-dseqc-report
make

Usage

source .env/bin/activate
java -jar target/uberjar/quartet-dseqc-report-*-standalone.jar -h

Plugin Mode

Prerequisite

Please access Quartet Service for more details

Installation

copm-cli install -n quartet-dseqc-report -V v0.1.2 -d plugins

Examples

...

Contributions

License

Copyright © 2021

This program and the accompanying materials are made available under the terms of the Eclipse Public License 2.0 which is available at http://www.eclipse.org/legal/epl-2.0.

This Source Code may also be made available under the following Secondary Licenses when the conditions for such availability set forth in the Eclipse Public License, v. 2.0 are satisfied: GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version, with the GNU Classpath Exception which is available at https://www.gnu.org/software/classpath/license.html.