From 5e37c7bdf50f3f4b56ab00b07278806c499becb5 Mon Sep 17 00:00:00 2001
From: chapmanb <chapmanb@50mail.com>
Date: Fri, 3 Aug 2018 13:18:51 -0400
Subject: [PATCH] Update: wes-service-client, bcbio-variation-recall, bcbio

- bcbio-variation-recall: Avoid use of gatk-framework. Fixes chapmanb/bcbio-nextgen#2412
- wes-service-client: python2/3 fixes
- bcbio: RNA-seq CWL improvements
---
 recipes/bcbio-nextgen/meta.yaml          | 6 +++---
 recipes/bcbio-variation-recall/meta.yaml | 8 +++++---
 recipes/wes-service-client/meta.yaml     | 6 +++---
 3 files changed, 11 insertions(+), 9 deletions(-)

diff --git a/recipes/bcbio-nextgen/meta.yaml b/recipes/bcbio-nextgen/meta.yaml
index a46e4e49e2bab..21f4b2f3f0781 100644
--- a/recipes/bcbio-nextgen/meta.yaml
+++ b/recipes/bcbio-nextgen/meta.yaml
@@ -3,13 +3,13 @@ package:
   version: '1.1.1a'
 
 build:
-  number: 1
+  number: 2
   skip: true # [not py27]
 
 source:
   #url: https://pypi.io/packages/source/b/bcbio-nextgen/bcbio-nextgen-1.1.0.tar.gz
-  url: https://github.com/bcbio/bcbio-nextgen/archive/affe63d.tar.gz
-  sha256: c3c53d7e3accfb2ee65d76468631dd6862cf7db16d0fbefe850d03a3a52140c7
+  url: https://github.com/bcbio/bcbio-nextgen/archive/352bf6a.tar.gz
+  sha256: 5f60c88b8928df0511a49c7cb3c56a7f1413cfdbf8c87554bef090cdcfb66715
 
 requirements:
   host:
diff --git a/recipes/bcbio-variation-recall/meta.yaml b/recipes/bcbio-variation-recall/meta.yaml
index be080bcde8536..48408a1b4e2be 100644
--- a/recipes/bcbio-variation-recall/meta.yaml
+++ b/recipes/bcbio-variation-recall/meta.yaml
@@ -1,10 +1,12 @@
+{% set version="0.1.9" %}
+
 package:
   name: bcbio-variation-recall
-  version: 0.1.8
+  version: {{ version }}
 
 source:
-  url: https://github.com/chapmanb/bcbio.variation.recall/releases/download/v0.1.8/bcbio-variation-recall
-  md5: f392a6f6ddd6c70dd103c8a885e6db75
+  url: https://github.com/chapmanb/bcbio.variation.recall/releases/download/v{{ version }}/bcbio-variation-recall
+  sha256: 683467ef7cfb035b62c95e89a74044b28a3b965ec2eb10e9cfec09676b8d04c2
 
 build:
   number: 1
diff --git a/recipes/wes-service-client/meta.yaml b/recipes/wes-service-client/meta.yaml
index eab2f32f5cc55..f89c29a62770b 100644
--- a/recipes/wes-service-client/meta.yaml
+++ b/recipes/wes-service-client/meta.yaml
@@ -1,5 +1,5 @@
 {% set version="2.5" %}
-{% set revision="296f843" %}
+{% set revision="312ff4a" %}
 
 package:
   name: wes-service-client
@@ -8,10 +8,10 @@ package:
 source:
   #url: https://pypi.io/packages/source/w/wes-service/wes-service-{{ version }}.tar.gz
   url: https://github.com/chapmanb/workflow-service/archive/{{ revision }}.tar.gz
-  sha256: e2de2921894e469c783da12bd3f658fa006ebe263b4f06030b446a839225b99c
+  sha256: e3acd510dbb99420addffdcb7b61febb95ee6f72000508c33707bb8434c70558
 
 build:
-  number: 0
+  number: 1
   noarch: python
   script: "$PYTHON setup.py install --single-version-externally-managed --record=record.txt"