diff --git a/schema/5.1.0/schema.md b/schema/5.1.0/schema.md index 198cd403..2f55f4a7 100644 --- a/schema/5.1.0/schema.md +++ b/schema/5.1.0/schema.md @@ -367,6 +367,7 @@ Curators MUST annotate the following columns in the `obs` dataframe:
"EFO:0010183"
for single cell library construction
assay_ontology_term_id
is either "EFO:0010961"
for Visium Spatial Gene Expression or "EFO:0030062"
for Slide-seqV2. then all observations MUST contain the same value."EFO:0008995"
for 10x technology or preferably its most accurate descendant. An assay based on SMART (Switching Mechanism at the 5' end of the RNA Template) or SMARTer technology SHOULD either be "EFO:0010184"
for Smart-like or preferably its most accurate descendant.uns['spatial']['is_single']
is True
* Added `array_row` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single']
is True
+ * Updated the requirements for `assay_ontology_term_id` for _Visium Spatial Gene Expression_ and _Slide-seqV2_. All observations must contain the same value.
* Updated the requirements for `cell_type_ontology_term_id` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single']
is True
. The value must be `"unknown"` if the corresponding value of `in_tissue` is `0`.
* Added `in_tissue` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single']
is True
* Updated the requirements for `is_primary_data` for _Visium Spatial Gene Expression_. The value must be False
when uns['spatial']['is_single']
is False
.