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feat: upload assets on release #56

Merged
merged 13 commits into from
Feb 26, 2024
Merged

feat: upload assets on release #56

merged 13 commits into from
Feb 26, 2024

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Bento007
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@Bento007 Bento007 commented Feb 24, 2024 •
edited
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Reason for Change

Changes

  • add GHA to upload release assets when ontology assets are updated
  • updated ontology builder to get ontology_info.yml from the ./ontology-assets directory.
  • update ontology buidl to save all_ontology.json.gz to ./ontology-assets directory

Testing steps

  • generated releases using a test branch a verified the assets were uploaded.

Notes for Reviewer

Bento007 and others added 4 commits February 23, 2024 17:13
@Bento007
feat: upload assets on release
81725db
@Bento007
fix manifest
2302055
@github-actions
chore: release tsmith/release-assets
63b782d
@Bento007
chore: release tsmith/release-assets (#57)
6a6b02a 
🤖 I have created a release *beep* *boop*
---


<details><summary>python-api: 0.0.1</summary>

## 0.0.1 (2024-02-24)


### Features

* Add API ontology querying module
([68f3168](68f3168))
* Add API ontology querying module
([#39](#39))
([239ef2b](239ef2b))
* **API:** setup python library
([211a099](211a099))
* **API:** setup python library
([f60f897](f60f897))
* **API:** Setup the library for development
([1f7ce03](1f7ce03))
* implement stubbed query functions
([334deb5](334deb5))
* set version regex for pyton api
([3720dab](3720dab))


### BugFixes

* README.md
([1eae21d](1eae21d))
</details>

<details><summary>ontology-assets: 0.0.1</summary>

## 0.0.1 (2024-02-24)


### Misc

* moving the generated artifacts
([c03c8e3](c03c8e3))
</details>

<details><summary>0.0.1</summary>

## 0.0.1 (2024-02-24)


### Features

* Add API ontology querying module
([68f3168](68f3168))
* Add API ontology querying module
([#39](#39))
([239ef2b](239ef2b))
* **API:** setup python library
([211a099](211a099))
* **API:** setup python library
([f60f897](f60f897))
* **API:** Setup the library for development
([1f7ce03](1f7ce03))
* **data release:** add hand curated_lists.py and orphans with comments
and a generator s…
([#33](#33))
([413dc23](413dc23))
* Define JSON Schemas for ontology data release artifacts
([#32](#32))
([b23894a](b23894a))
* fix changelog
([0285ef7](0285ef7))
* implement stubbed query functions
([334deb5](334deb5))
* set version regex for pyton api
([3720dab](3720dab))
* setup Lintes for repo
([4a70384](4a70384))
* Store branch ancestors ("part_of" relationships) in all_ontology.json
([80e1f0d](80e1f0d))
* Store branch ancestors ("part_of" relationships) in all_ontology.json
([#38](#38))
([64c2653](64c2653))
* **testing:** add testing for ontology-builder
([e087eca](e087eca))
* **testing:** add testing for ontology-builder
([e087eca](e087eca))
* upload assets on release
([81725db](81725db))


### Misc

* add ontology-assets to release
([b09c814](b09c814))
* add ontology-assets to release
([04835c0](04835c0))
* bootstrap release-please
([f32db86](f32db86))
* bootstrap release-please
([7d0554f](7d0554f))
* change bootstrap-sha
([f2571e8](f2571e8))
* check that pr titles follow conventional commit format
([#41](#41))
([bd6d842](bd6d842))
* clean-up extract ontology term metadata parsing
([b9d2959](b9d2959))
* configure release-please
([#40](#40))
([879ead2](879ead2))
* **deps:** bump owlready2 from 0.38 to 0.45 in /tools/ontology-builder
([5466a08](5466a08))
* **deps:** bump owlready2 from 0.38 to 0.45 in /tools/ontology-builder
([#37](#37))
([db3e5c8](db3e5c8))
* **deps:** bump pyyaml from 6.0 to 6.0.1 in /tools/ontology-builder
([98dfba2](98dfba2))
* **deps:** bump pyyaml from 6.0 to 6.0.1 in /tools/ontology-builder
([#36](#36))
([72e7e40](72e7e40))
* move over all_ontology.json generator script + gha to repo from
single-cell-curation
([f90fb05](f90fb05))
* move over all_ontology.json generator script + gha to repo from
single-cell-curation
([#27](#27))
([49237a7](49237a7))
* moving the generated artifacts
([c03c8e3](c03c8e3))
* refactor all_ontology_generator for cleanliness and modularity
([b96c552](b96c552))
* refactor all_ontology_generator for cleanliness and modularity
([b96c552](b96c552))
* refactor all_ontology_generator for cleanliness and modularity
([4384459](4384459))
* release 0.0.2
([4972aa2](4972aa2))
* release 0.0.2
([#42](#42))
([19079d4](19079d4))
* remove unused release.yml configs
([ce00bef](ce00bef))
* test-release
([5f20d18](5f20d18))


### BugFixes

* add dependabot.yml
([575f371](575f371))
* add ontology-assets
([8d51dea](8d51dea))
* add ontology-assets
([01f504d](01f504d))
* README.md
([d19efeb](d19efeb))
* README.md
([1eae21d](1eae21d))
* release pr format
([20d9d1d](20d9d1d))
* remove root from release-please-config.json
([8265b3e](8265b3e))
* test branch
([f68622a](f68622a))
* test branch
([fac02bb](fac02bb))
* test release
([aab95e8](aab95e8))
</details>

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).
@Bento007
Copy link
Collaborator Author

Back out the last commit and try release again.

Base automatically changed from tsmith/release-process to main February 26, 2024 19:43
@Bento007 Bento007 marked this pull request as ready for review February 26, 2024 20:05
@Bento007 Bento007 merged commit 84a1c5d into main Feb 26, 2024
7 checks passed
@Bento007 Bento007 deleted the tsmith/release-assets branch February 26, 2024 23:34
@github-actions github-actions bot mentioned this pull request Feb 26, 2024
Merged
Bento007 pushed a commit that referenced this pull request Feb 26, 2024
@github-actions
chore: release main (#74)
e748fe9 
🤖 I have created a release *beep* *boop*
---


<details><summary>python-api: 0.0.1</summary>

## 0.0.1 (2024-02-26)


### Features

* Add API ontology querying module
([68f3168](68f3168))
* Add API ontology querying module
([#39](#39))
([239ef2b](239ef2b))
* **API:** setup python library
([211a099](211a099))
* **API:** setup python library
([f60f897](f60f897))
* **API:** Setup the library for development
([1f7ce03](1f7ce03))
* implement stubbed query functions
([334deb5](334deb5))
* set version regex for pyton api
([3720dab](3720dab))


### Misc

* release tsmith/release-assets
([63b782d](63b782d))
* release tsmith/release-assets
([#57](#57))
([6a6b02a](6a6b02a))


### BugFixes

* README.md
([1eae21d](1eae21d))
</details>

<details><summary>ontology-assets: 0.0.1</summary>

## 0.0.1 (2024-02-26)


### Features

* upload assets on release
([#56](#56))
([84a1c5d](84a1c5d))


### Misc

* move curated lists to ontology-assets
([#48](#48))
([77916df](77916df))
* moving the generated artifacts
([c03c8e3](c03c8e3))
* release tsmith/release-assets
([63b782d](63b782d))
* release tsmith/release-assets
([#57](#57))
([6a6b02a](6a6b02a))
</details>

<details><summary>0.0.1</summary>

## 0.0.1 (2024-02-26)


### Features

* Add API ontology querying module
([68f3168](68f3168))
* Add API ontology querying module
([#39](#39))
([239ef2b](239ef2b))
* **API:** setup python library
([211a099](211a099))
* **API:** setup python library
([f60f897](f60f897))
* **API:** Setup the library for development
([1f7ce03](1f7ce03))
* **data release:** add hand curated_lists.py and orphans with comments
and a generator s…
([#33](#33))
([413dc23](413dc23))
* Define JSON Schemas for ontology data release artifacts
([#32](#32))
([b23894a](b23894a))
* fix changelog
([0285ef7](0285ef7))
* implement stubbed query functions
([334deb5](334deb5))
* regenerate all_ontology if the schema changes
([5f74bfb](5f74bfb))
* set version regex for pyton api
([3720dab](3720dab))
* setup Lintes for repo
([4a70384](4a70384))
* Store branch ancestors ("part_of" relationships) in all_ontology.json
([80e1f0d](80e1f0d))
* Store branch ancestors ("part_of" relationships) in all_ontology.json
([#38](#38))
([64c2653](64c2653))
* **testing:** add testing for ontology-builder
([e087eca](e087eca))
* **testing:** add testing for ontology-builder
([e087eca](e087eca))
* upload assets on release
([81725db](81725db))
* upload assets on release
([#56](#56))
([84a1c5d](84a1c5d))


### Misc

* add ontology-assets to release
([b09c814](b09c814))
* add ontology-assets to release
([04835c0](04835c0))
* bootstrap release-please
([f32db86](f32db86))
* bootstrap release-please
([7d0554f](7d0554f))
* change bootstrap-sha
([f2571e8](f2571e8))
* check that pr titles follow conventional commit format
([#41](#41))
([bd6d842](bd6d842))
* clean-up extract ontology term metadata parsing
([b9d2959](b9d2959))
* configure release-please
([#40](#40))
([879ead2](879ead2))
* **deps:** bump owlready2 from 0.38 to 0.45 in /tools/ontology-builder
([5466a08](5466a08))
* **deps:** bump owlready2 from 0.38 to 0.45 in /tools/ontology-builder
([#37](#37))
([db3e5c8](db3e5c8))
* **deps:** bump pyyaml from 6.0 to 6.0.1 in /tools/ontology-builder
([98dfba2](98dfba2))
* **deps:** bump pyyaml from 6.0 to 6.0.1 in /tools/ontology-builder
([#36](#36))
([72e7e40](72e7e40))
* enable release-please for API and Assets
([#55](#55))
([9ecda79](9ecda79))
* move curated lists to ontology-assets
([#48](#48))
([77916df](77916df))
* move over all_ontology.json generator script + gha to repo from
single-cell-curation
([f90fb05](f90fb05))
* move over all_ontology.json generator script + gha to repo from
single-cell-curation
([#27](#27))
([49237a7](49237a7))
* moving the generated artifacts
([c03c8e3](c03c8e3))
* refactor all_ontology_generator for cleanliness and modularity
([b96c552](b96c552))
* refactor all_ontology_generator for cleanliness and modularity
([b96c552](b96c552))
* refactor all_ontology_generator for cleanliness and modularity
([4384459](4384459))
* release 0.0.2
([4972aa2](4972aa2))
* release 0.0.2
([#42](#42))
([19079d4](19079d4))
* release tsmith/release-assets
([63b782d](63b782d))
* release tsmith/release-assets
([#57](#57))
([6a6b02a](6a6b02a))
* remove unused release.yml configs
([ce00bef](ce00bef))
* test-release
([5f20d18](5f20d18))


### BugFixes

* .release-please-manifest.json is valid json
([c09f2cc](c09f2cc))
* add dependabot.yml
([575f371](575f371))
* add ontology-assets
([8d51dea](8d51dea))
* add ontology-assets
([01f504d](01f504d))
* README.md
([d19efeb](d19efeb))
* README.md
([1eae21d](1eae21d))
* release pr format
([20d9d1d](20d9d1d))
* remove root from release-please-config.json
([8265b3e](8265b3e))
* test branch
([f68622a](f68622a))
* test branch
([fac02bb](fac02bb))
* test release
([aab95e8](aab95e8))
* trigger all-ontology generation if schema changes
([#46](#46))
([3121833](3121833))
* use matrix
([b4d5298](b4d5298))
</details>

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
This was referenced Apr 5, 2024
Closed
Merged
Bento007 pushed a commit that referenced this pull request Apr 9, 2024
@github-actions
chore: release tsmith/release-docs (#190)
41215a4 
🤖 I have created a release *beep* *boop*
---


<details><summary>assets: 0.4.0</summary>

##
[0.4.0](assets-v0.3.0...assets-v0.4.0)
(2024-04-09)


### Features

* add function to fetch curated ontology term lists
([#141](#141))
([5c7db62](5c7db62))
* fetch ontology term descriptions, if available
([#181](#181))
([0120377](0120377))
* load GH Release Assets for schema version in memory
([#72](#72))
([58bad0a](58bad0a))
* refactor ancestry mapping to include distance from descendant node +
implement functions to support curated list term mapping
([#96](#96))
([7fc3562](7fc3562))
* refer to ontology source filenames in ontology_info and return that in
get_ontology_download_url
([#106](#106))
([ff9d826](ff9d826))
* **release:** generate descendant mapping for tissues and cells
([#100](#100))
([841fddf](841fddf))
* remove all-ontology.json.gz
([83fefd6](83fefd6))
* split all_ontology into individual files.
([#93](#93))
([ead59e5](ead59e5))
* upload assets on release
([#56](#56))
([84a1c5d](84a1c5d))


### Misc

* deprecate older version of cellxgene schema
([#172](#172))
([186e762](186e762))
* move curated lists to ontology-assets
([#48](#48))
([77916df](77916df))
* moving the generated artifacts
([c03c8e3](c03c8e3))
* release main
([#130](#130))
([0b37dc8](0b37dc8))
* release main
([#146](#146))
([4ca76f0](4ca76f0))
* release main
([#185](#185))
([9b2fe53](9b2fe53))
* release main
([#74](#74))
([e748fe9](e748fe9))
* release tsmith/release-assets
([63b782d](63b782d))
* release tsmith/release-assets
([#57](#57))
([6a6b02a](6a6b02a))
* update ontology decendant mappings
([#117](#117))
([48451af](48451af))
* update ontology decendant mappings
([#142](#142))
([fb23618](fb23618))
* update ontology decendant mappings
([#162](#162))
([12def74](12def74))
* update ontology descendant mappings
([#167](#167))
([5d3d097](5d3d097))
* update ontology descendant mappings
([#180](#180))
([65ca10f](65ca10f))


### BugFixes

* lint errors
([f5e4583](f5e4583))
* Schema format and validation fixes.
([#113](#113))
([0465ee7](0465ee7))
</details>

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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