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r500 fgm not passed1.txt
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r500 fgm not passed1.txt
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--fullstop
keyword start7
--fullstop
GSE10113_series_matrix.txtimp_info.txt
the GS modified is 'sac' with confidence 1.830000
line start7
GSE10726_series_matrix.txtimp_info.txt
the GS modified is 'beta-catenin' with confidence 3.710000
deficient one
deficient one
GSE12538_series_matrix.txtimp_info.txt
the GS modified is 'myc' with confidence 3.450000
--fullstop
minus two
GSE18052-GPL1261_series_matrix.txtimp_info.txt
the GS modified is 'bbf2h7' with confidence -2.780000
minus two
minus two
minus two
GSE19194_series_matrix.txtimp_info.txt
the GS modified is 'cbfb' with confidence -8.340000
minus two
minus two
minus two
GSE19329_series_matrix.txtimp_info.txt
the GS modified is 'vrk1' with confidence -8.340000
deficient one
deficient one
GSE19960-GPL9250_series_matrix.txtimp_info.txt
the GS modified is 'aid' with confidence 6.900000
line start7
GSE30318_series_matrix.txtimp_info.txt
the GS modified is 'fancc' with confidence 3.710000
deficient one
GSE32487-GPL9250_series_matrix.txtimp_info.txt
the GS modified is 'dnmt3a' with confidence 3.450000
overexpression one
GSE33199_series_matrix.txtimp_info.txt
the GS modified is 'myc' with confidence 0.370000
--- 14.1549999714 seconds ---
4989442 function calls (4986983 primitive calls) in 14.011 seconds
Ordered by: cumulative time
ncalls tottime percall cumtime percall filename:lineno(function)
8784 12.269 0.001 13.789 0.002 D:\M.Tech work\proper\fgm.py:27(find_matches)
14883 0.218 0.000 1.220 0.000 {any}
2027570 0.892 0.000 0.992 0.000 D:\M.Tech work\proper\fgm.py:46(<genexpr>)
108 0.006 0.000 0.136 0.001 D:\M.Tech work\proper\rules1.py:7(cl)
32279 0.034 0.000 0.131 0.000 C:\Anaconda\lib\re.py:226(_compile)
2376 0.002 0.000 0.116 0.000 C:\Anaconda\lib\re.py:139(search)
29351 0.023 0.000 0.112 0.000 C:\Anaconda\lib\re.py:164(split)
504 0.107 0.000 0.107 0.000 {method 'readlines' of 'file' objects}
2086478/2086233 0.105 0.000 0.105 0.000 {len}
390 0.003 0.000 0.085 0.000 C:\Anaconda\lib\sre_compile.py:493(compile)
2376 0.053 0.000 0.053 0.000 {method 'search' of '_sre.SRE_Pattern' objects}
289021 0.050 0.000 0.050 0.000 {method 'lower' of 'str' objects}
29351 0.048 0.000 0.048 0.000 {method 'split' of '_sre.SRE_Pattern' objects}
390 0.002 0.000 0.046 0.000 C:\Anaconda\lib\sre_parse.py:677(parse)
552 0.001 0.000 0.043 0.000 C:\Anaconda\lib\re.py:144(sub)
809/390 0.002 0.000 0.041 0.000 C:\Anaconda\lib\sre_parse.py:301(_parse_sub)
845/426 0.016 0.000 0.040 0.000 C:\Anaconda\lib\sre_parse.py:379(_parse)
390 0.001 0.000 0.036 0.000 C:\Anaconda\lib\sre_compile.py:478(_code)
504 0.030 0.000 0.030 0.000 {open}
289021 0.029 0.000 0.029 0.000 {method 'rstrip' of 'str' objects}
1086/390 0.015 0.000 0.025 0.000 C:\Anaconda\lib\sre_compile.py:32(_compile)
7384 0.004 0.000 0.012 0.000 C:\Anaconda\lib\sre_parse.py:201(get)
552 0.012 0.000 0.012 0.000 {method 'sub' of '_sre.SRE_Pattern' objects}
33267 0.011 0.000 0.011 0.000 {method 'get' of 'dict' objects}
8478 0.009 0.000 0.010 0.000 C:\Anaconda\lib\sre_parse.py:182(__next)
29351 0.010 0.000 0.010 0.000 {filter}
390 0.002 0.000 0.010 0.000 C:\Anaconda\lib\sre_compile.py:359(_compile_info)
2 0.001 0.000 0.008 0.004 C:\Anaconda\lib\os.py:209(walk)
1311/631 0.006 0.000 0.007 0.000 C:\Anaconda\lib\sre_parse.py:140(getwidth)
7573 0.004 0.000 0.006 0.000 C:\Anaconda\lib\sre_parse.py:130(__getitem__)
1000 0.002 0.000 0.006 0.000 C:\Anaconda\lib\ntpath.py:62(join)
872 0.005 0.000 0.005 0.000 C:\Anaconda\lib\re.py:204(escape)
500 0.005 0.000 0.005 0.000 {nt._isdir}
26441 0.005 0.000 0.005 0.000 {method 'append' of 'list' objects}
331 0.004 0.000 0.004 0.000 {method 'split' of 'str' objects}
2000 0.003 0.000 0.004 0.000 C:\Anaconda\lib\ntpath.py:95(splitdrive)
6295 0.003 0.000 0.004 0.000 C:\Anaconda\lib\sre_parse.py:138(append)
8743 0.003 0.000 0.003 0.000 {isinstance}
9747 0.002 0.000 0.002 0.000 {method 'startswith' of 'str' objects}
2443 0.001 0.000 0.002 0.000 C:\Anaconda\lib\sre_parse.py:195(match)
132 0.000 0.000 0.001 0.000 C:\Anaconda\lib\sre_compile.py:178(_compile_charset)
4729 0.001 0.000 0.001 0.000 {_sre.getlower}
390 0.001 0.000 0.001 0.000 C:\Anaconda\lib\sre_parse.py:178(__init__)
717 0.001 0.000 0.001 0.000 C:\Anaconda\lib\sre_parse.py:257(_escape)
1 0.001 0.001 0.001 0.001 {nt.listdir}
2477 0.001 0.000 0.001 0.000 {min}
132 0.001 0.000 0.001 0.000 C:\Anaconda\lib\sre_compile.py:207(_optimize_charset)
2000 0.001 0.000 0.001 0.000 {method 'replace' of 'str' objects}
233 0.000 0.000 0.001 0.000 C:\Anaconda\lib\sre_compile.py:354(_simple)
390 0.001 0.000 0.001 0.000 {_sre.compile}
780 0.001 0.000 0.001 0.000 C:\Anaconda\lib\sre_compile.py:472(isstring)
1086 0.001 0.000 0.001 0.000 C:\Anaconda\lib\sre_parse.py:90(__init__)
1365 0.001 0.000 0.001 0.000 {method 'join' of 'str' objects}
511 0.001 0.000 0.001 0.000 {method 'remove' of 'list' objects}
222 0.001 0.000 0.001 0.000 {method 'sort' of 'list' objects}
111 0.000 0.000 0.001 0.000 {sorted}
403 0.000 0.000 0.000 0.000 C:\Anaconda\lib\sre_parse.py:72(opengroup)
403 0.000 0.000 0.000 0.000 C:\Anaconda\lib\sre_parse.py:83(closegroup)
5141 0.000 0.000 0.000 0.000 {ord}
972 0.000 0.000 0.000 0.000 C:\Anaconda\lib\sre_parse.py:126(__len__)
671 0.000 0.000 0.000 0.000 {range}
390 0.000 0.000 0.000 0.000 C:\Anaconda\lib\sre_parse.py:67(__init__)
814 0.000 0.000 0.000 0.000 {max}
3 0.000 0.000 0.000 0.000 {method 'clear' of 'dict' objects}
721 0.000 0.000 0.000 0.000 {abs}
390 0.000 0.000 0.000 0.000 {method 'items' of 'dict' objects}
233 0.000 0.000 0.000 0.000 C:\Anaconda\lib\sre_parse.py:134(__setitem__)
169 0.000 0.000 0.000 0.000 D:\M.Tech work\proper\fgm.py:73(<lambda>)
16 0.000 0.000 0.000 0.000 D:\M.Tech work\proper\fgm.py:120(<lambda>)
2 0.000 0.000 0.000 0.000 {time.time}
88 0.000 0.000 0.000 0.000 C:\Anaconda\lib\sre_compile.py:24(_identityfunction)
1 0.000 0.000 0.000 0.000 D:\M.Tech work\proper\rules1.py:5(<module>)
1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
[Finished in 14.4s]