diff --git a/README.rst b/README.rst index aaf478a..2cd5214 100644 --- a/README.rst +++ b/README.rst @@ -9,10 +9,12 @@ Tifffile is a Python library to (1) store NumPy arrays in TIFF (Tagged Image File Format) files, and (2) read image and metadata from TIFF-like files used in bioimaging. -Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, DNG, STK, LSM, -SGI, NIHImage, ImageJ, MMStack, NDTiff, FluoView, ScanImage, SEQ, GEL, -SVS, SCN, SIS, BIF, ZIF (Zoomable Image File Format), QPTIFF (QPI, PKI), NDPI, -AVS, Philips DP, and GeoTIFF formatted files. +Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, +Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, +ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, +Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, +Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), +Hamamatsu NDPI, Argos AVS, and Philips DP formatted files. Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels. @@ -33,7 +35,7 @@ many proprietary metadata formats. :Author: `Christoph Gohlke `_ :License: BSD 3-Clause -:Version: 2024.6.18 +:Version: 2024.7.2 :DOI: `10.5281/zenodo.6795860 `_ Quickstart @@ -69,7 +71,7 @@ Requirements This revision was tested with the following requirements and dependencies (other versions may work): -- `CPython `_ 3.9.13, 3.10.11, 3.11.9, 3.12.4, 64-bit +- `CPython `_ 3.10.11, 3.11.9, 3.12.4, 3.13.0b3, 64-bit - `NumPy `_ 2.0.0 - `Imagecodecs `_ 2024.1.1 (required for encoding or decoding LZW, JPEG, etc. compressed segments) @@ -79,15 +81,20 @@ This revision was tested with the following requirements and dependencies (required only for validating and printing XML) - `Zarr `_ 2.18.2 (required only for opening Zarr stores) -- `Fsspec `_ 2024.6.0 +- `Fsspec `_ 2024.6.1 (required only for opening ReferenceFileSystem files) Revisions --------- -2024.6.18 +2024.7.2 - Pass 5086 tests. +- Enable memmap to create empty files with non-native byte order. +- Deprecate Python 3.9, support Python 3.13. + +2024.6.18 + - Ensure TiffPage.nodata is castable to dtype (breaking, #260). - Support Argos AVS slides. @@ -210,12 +217,7 @@ Notes ----- TIFF, the Tagged Image File Format, was created by the Aldus Corporation and -Adobe Systems Incorporated. STK, LSM, FluoView, SGI, SEQ, GEL, QPTIFF, NDPI, -SCN, SVS, ZIF, BIF, and OME-TIFF, are custom extensions defined by Molecular -Devices (Universal Imaging Corporation), Carl Zeiss MicroImaging, Olympus, -Silicon Graphics International, Media Cybernetics, Molecular Dynamics, -PerkinElmer, Hamamatsu, Leica, ObjectivePathology, Roche Digital Pathology, -and the Open Microscopy Environment consortium, respectively. +Adobe Systems Incorporated. Tifffile supports a subset of the TIFF6 specification, mainly 8, 16, 32, and 64-bit integer, 16, 32 and 64-bit float, grayscale and multi-sample images.