From 8e53dafadad3f4fbabbd47c4a818ee015697495e Mon Sep 17 00:00:00 2001
From: Acribbs <a.p.cribbs@gmail.com>
Date: Fri, 29 Nov 2024 15:51:30 +0000
Subject: [PATCH] remade yml as its not being picked up by github actions

---
 .github/workflows/cgatcore_python.yml | 19 +++++++++++++------
 1 file changed, 13 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/cgatcore_python.yml b/.github/workflows/cgatcore_python.yml
index 605ad4a..ff53968 100644
--- a/.github/workflows/cgatcore_python.yml
+++ b/.github/workflows/cgatcore_python.yml
@@ -19,14 +19,15 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
+
       - name: Cache conda
         uses: actions/cache@v3
         env:
-          # Increase this value to reset cache if conda/environments/cgat-core.yml has not changed
           CACHE_NUMBER: 0
         with:
           path: ~/conda_pkgs_dir
           key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('conda/environments/cgat-core.yml') }}
+
       - name: Set installer URL
         id: set-installer-url
         run: |
@@ -35,6 +36,7 @@ jobs:
           elif [[ "${{ matrix.os }}" == "macos-latest" ]]; then
             echo "installer-url=https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-MacOSX-arm64.sh" >> $GITHUB_ENV
           fi
+
       - uses: conda-incubator/setup-miniconda@v2
         with:
           installer-url: ${{ env.installer-url }}
@@ -43,33 +45,38 @@ jobs:
           channel-priority: true
           activate-environment: cgat-core
           environment-file: conda/environments/cgat-core.yml
+
       - name: Configure Conda Paths
         run: echo "/usr/share/miniconda3/condabin" >> $GITHUB_PATH
+
       - name: Show conda
         run: |
           conda info
           conda list
+
       - name: Test
         run: |
           pip install .
           ./all-tests.sh
+
       - name: Debug Python Environment
         run: |
-        python --version
-        pip list
-        openssl version
+          python --version
+          pip list
+          openssl version
 
   deploy_docs:
     name: Deploy MkDocs Documentation
     runs-on: ubuntu-latest
     needs: build
+
     steps:
       - uses: actions/checkout@v3
 
       - name: Set up Python
         uses: actions/setup-python@v4
         with:
-          python-version: '3.x'
+          python-version: '3.10'
 
       - name: Install MkDocs and Dependencies
         run: |
@@ -78,4 +85,4 @@ jobs:
       - name: Build and Deploy MkDocs Site
         run: mkdocs gh-deploy --force --clean
         env:
-          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
\ No newline at end of file
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}