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remade yml as its not being picked up by github actions
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Acribbs committed Nov 29, 2024
1 parent a64f97e commit 8e53daf
Showing 1 changed file with 13 additions and 6 deletions.
19 changes: 13 additions & 6 deletions .github/workflows/cgatcore_python.yml
Original file line number Diff line number Diff line change
Expand Up @@ -19,14 +19,15 @@ jobs:

steps:
- uses: actions/checkout@v3

- name: Cache conda
uses: actions/cache@v3
env:
# Increase this value to reset cache if conda/environments/cgat-core.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('conda/environments/cgat-core.yml') }}

- name: Set installer URL
id: set-installer-url
run: |
Expand All @@ -35,6 +36,7 @@ jobs:
elif [[ "${{ matrix.os }}" == "macos-latest" ]]; then
echo "installer-url=https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-MacOSX-arm64.sh" >> $GITHUB_ENV
fi
- uses: conda-incubator/setup-miniconda@v2
with:
installer-url: ${{ env.installer-url }}
Expand All @@ -43,33 +45,38 @@ jobs:
channel-priority: true
activate-environment: cgat-core
environment-file: conda/environments/cgat-core.yml

- name: Configure Conda Paths
run: echo "/usr/share/miniconda3/condabin" >> $GITHUB_PATH

- name: Show conda
run: |
conda info
conda list
- name: Test
run: |
pip install .
./all-tests.sh
- name: Debug Python Environment
run: |
python --version
pip list
openssl version
python --version
pip list
openssl version
deploy_docs:
name: Deploy MkDocs Documentation
runs-on: ubuntu-latest
needs: build

steps:
- uses: actions/checkout@v3

- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.x'
python-version: '3.10'

- name: Install MkDocs and Dependencies
run: |
Expand All @@ -78,4 +85,4 @@ jobs:
- name: Build and Deploy MkDocs Site
run: mkdocs gh-deploy --force --clean
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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