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They're slightly different. --script can take any kind of script (ie a complex multi-line script) and submit it to the queue. --command-file is specific for running chunks and requires a newline separated list of commands to split into chunks, (i.e. each command(s) to be split must be fully contained on a single line).
Maybe I'm slow, but why have two different options? It doesn't make sense to specify both at any one time, right?
Obviously low priority
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