From e4666d04d67baa2464d0c9f3c5c9dfa642be6e6f Mon Sep 17 00:00:00 2001 From: Cody Baker <51133164+CodyCBakerPhD@users.noreply.github.com> Date: Fri, 22 Mar 2024 12:53:51 -0400 Subject: [PATCH] debugging --- tests/docker_yaml_conversion_specification_cli.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/tests/docker_yaml_conversion_specification_cli.py b/tests/docker_yaml_conversion_specification_cli.py index 3f2e6d2bc..b5348bf70 100644 --- a/tests/docker_yaml_conversion_specification_cli.py +++ b/tests/docker_yaml_conversion_specification_cli.py @@ -31,7 +31,7 @@ def test_run_conversion_from_yaml_cli(self): command=( "docker run -t " f"--volume {self.source_volume}:/neuroconv ghcr.io/catalystneuro/neuroconv:{self.tag} " - f"neuroconv /neuroconv/tests/test_on_data/conversion_specifications/{yaml_file_path} " + f"neuroconv {yaml_file_path} " f"--data-folder-path /neuroconv/{DATA_PATH} --output-folder-path {self.test_folder} --overwrite" ), catch_output=True, @@ -86,6 +86,9 @@ def test_run_conversion_from_yaml_variable(self): command=( "docker run -t " f"--volume {self.source_volume}:/neuroconv ghcr.io/catalystneuro/neuroconv:yaml_variable" + "-e NEUROCONV_YAML=$NEUROCONV_YAML" + "-e NEUROCONV_DATA_PATH=$NEUROCONV_DATA_PATH" + "-e NEUROCONV_OUTPUT_PATH=$NEUROCONV_OUTPUT_PATH" ), catch_output=True, )