Nelson Lab Conversion Progress

[luiztauffer]

Behavior data interfaces

• Sample data uploaded and complete
• NoldusBehaviorInterface
• AIM score behavior data interface
  • expands the data array to a value per second, keeping the last AIM score value

Raw_TDT_photometry_withVideos session

• Sample data uploaded and complete
• TDTFiberPhotometryInterface
  • adapt data interface to new extension (Create extension spec ndx-fiber-photometry#1)
• Add AIM score behavior data
  • Time sync AIM scores
• Noldus behavioral data
  • Time sync Noldus behavioral data
• video
  • Time sync video
• conversion script
• example notebook

Raw_Plexon_ephys_LIDpaper session

• Sample data uploaded and complete
• NeuroExplorer conversion - LFP
  • add traces
  • remove channels Laser and AD50
  • add probe information
• NeuroExplorerUnitsInterface
• Optogenetic stimulation
  • Add continuous signal as pynwb.ogen.OptogeneticSeries
  • Add Trials table, with link to OptogeneticSeries
• Add AIM score behavior data
• Time sync AIM scores
• Noldus behavioral data
• Time sync Noldus behavioral data
• conversion script
• example notebook

Raw_Intan_Ephys_withVideos session

• Sample data uploaded and complete
• Raw electrophysiology traces (rhd)
  • conversion with multiple files
  • add probe information
• Add AIM score behavior data
• Converter class
• Time sync AIM scores
• videos (top + side)
  • depends on multi videos neuroconv#914
• Time sync videos
  • Depends on Intan digital channel extraction for header attached and one file per signal format NeuralEnsemble/python-neo#1491
• conversion script
• example notebook

Raw_BlackRock_withCognitiveEvents session

• raw traces (ns6)
• LFP traces (ns2)
  • add traces
  • add probe information
  • fix duplicated electrodes issue
• sorted spikes (nev)
• add and time-align behavioral events
• video
• Time sync video
• Behavioral events
• conversion script
• example notebook