-
Notifications
You must be signed in to change notification settings - Fork 1
/
MANIFEST
138 lines (138 loc) · 5.85 KB
/
MANIFEST
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
.travis.yml
bin/brass_bedpe2vcf.pl
bin/grass.pl
CHANGES.md
docs.tar.gz
docs/pod_html/_blkbluw.css
docs/pod_html/_blkcynw.css
docs/pod_html/_blkgrng.css
docs/pod_html/_blkmagw.css
docs/pod_html/_grygrnk.css
docs/pod_html/_grygrnw.css
docs/pod_html/_podly.js
docs/pod_html/_whtgrng.css
docs/pod_html/_whtnavk.css
docs/pod_html/_whtprpk.css
docs/pod_html/_whtpurk.css
docs/pod_html/index.html
docs/pod_html/Sanger/CGP/Grass/Anno.html
docs/pod_html/Sanger/CGP/Grass/AnnoPoint.html
docs/pod_html/Sanger/CGP/Grass/Annotation/RGannotator.html
docs/pod_html/Sanger/CGP/Grass/Annotation/RGcombinationAnnotator.html
docs/pod_html/Sanger/CGP/Grass/Annotation/RGendAnnotator.html
docs/pod_html/Sanger/CGP/Grass/DataEntry.html
docs/pod_html/Sanger/CGP/Grass/FlankingBases.html
docs/pod_html/Sanger/CGP/Grass/GenomeData.html
docs/pod_html/Sanger/CGP/Grass/GenomeData/Exon.html
docs/pod_html/Sanger/CGP/Grass/GenomeData/GenomeDataCache.html
docs/pod_html/Sanger/CGP/Grass/GenomeData/GenomeDataEnsembl.html
docs/pod_html/Sanger/CGP/Grass/GenomeData/Transcript.html
docs/pod_html/Sanger/CGP/Grass/VcfContigs.html
docs/pod_html/Sanger/CGP/Grass/VcfConverter.html
docs/reports_html/common.js
docs/reports_html/cover.14
docs/reports_html/cover.css
docs/reports_html/coverage.html
docs/reports_html/css.js
docs/reports_html/index.html
docs/reports_html/lib-Sanger-CGP-Grass-Anno-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-Anno-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-Anno-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-AnnoPoint-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-AnnoPoint-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-AnnoPoint-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGannotator-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGannotator-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGannotator-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGcombinationAnnotator-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGcombinationAnnotator-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGcombinationAnnotator-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGendAnnotator-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGendAnnotator-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-Annotation-RGendAnnotator-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-DataEntry-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-DataEntry-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-DataEntry-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-FlankingBases-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-FlankingBases-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-FlankingBases-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-Exon-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-Exon-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-Exon-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-GenomeDataCache-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-GenomeDataCache-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-GenomeDataCache-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-GenomeDataEnsembl-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-GenomeDataEnsembl-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-GenomeDataEnsembl-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-Transcript-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-Transcript-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-GenomeData-Transcript-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-VcfContigs-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-VcfContigs-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-VcfContigs-pm.html
docs/reports_html/lib-Sanger-CGP-Grass-VcfConverter-pm--branch.html
docs/reports_html/lib-Sanger-CGP-Grass-VcfConverter-pm--subroutine.html
docs/reports_html/lib-Sanger-CGP-Grass-VcfConverter-pm.html
docs/reports_html/standardista-table-sorting.js
docs/reports_text/coverage.txt
lib/Sanger/CGP/Grass.pm
lib/Sanger/CGP/Grass/Anno.pm
lib/Sanger/CGP/Grass/AnnoPoint.pm
lib/Sanger/CGP/Grass/Annotation/RGannotator.pm
lib/Sanger/CGP/Grass/Annotation/RGcombinationAnnotator.pm
lib/Sanger/CGP/Grass/Annotation/RGendAnnotator.pm
lib/Sanger/CGP/Grass/DataEntry.pm
lib/Sanger/CGP/Grass/FlankingBases.pm
lib/Sanger/CGP/Grass/GenomeData.pm
lib/Sanger/CGP/Grass/GenomeData/Exon.pm
lib/Sanger/CGP/Grass/GenomeData/GenomeDataCache.pm
lib/Sanger/CGP/Grass/GenomeData/GenomeDataEnsembl.pm
lib/Sanger/CGP/Grass/GenomeData/Transcript.pm
lib/Sanger/CGP/Grass/VcfContigs.pm
lib/Sanger/CGP/Grass/VcfConverter.pm
LICENCE.TXT
Makefile.PL
MANIFEST This list of files
perltidy.LOG
prerelease.sh
README.md
setup.log
setup.sh
t/1_pm_compile.t
t/2_pl_compile.t
t/Anno.t
t/AnnoPoint.t
t/DataEntry.t
t/Exon.t
t/FlankingBases.t
t/GenomeData.t
t/GenomeDataCache.t
t/GenomeDataEnsembl.t
t/grass.t
t/RGannotator.t
t/RGcombinationAnnotator.t
t/RGendAnnotator.t
t/Transcript.t
t/VcfConverter.t
testData/genome.fa.fai
testData/test_FlankingBases_ann.in
testData/test_FlankingBases_ann.out
testData/test_VcfConverter_ann.bedpe
testData/test_VcfConverter_ann.vcf
testData/test_VcfConverterII_ann.bedpe
testData/test_VcfConverterII_ann.vcf
testData/testout_Brass.bedpe
testData/testout_Brass_ann.bedpe
testData/testout_Brass_ann.vcf
testData/testout_Brass_I_and_II
testData/testout_Brass_I_and_II_ann
testData/vagrent.cache.gz
testData/vagrent.cache.gz.tbi
testData/vagrent.fa
testData/vagrent.fa.fai