From 80ee62314f8d1e3f7be17f8b64153dcbaabb7677 Mon Sep 17 00:00:00 2001
From: rmadupuri <ramyamadupuri99@gmail.com>
Date: Fri, 18 Oct 2024 11:44:51 -0400
Subject: [PATCH] fix data issue

---
 public/aml_ohsu_2022/data_mutations.txt                 | 4 ++--
 public/thca_tcga_pub/case_lists/cases_TERT_mutation.txt | 6 ++++++
 public/thca_tcga_pub/data_clinical_patient.txt          | 4 ++--
 public/thca_tcga_pub/data_mutations.txt                 | 4 ++--
 4 files changed, 12 insertions(+), 6 deletions(-)
 create mode 100755 public/thca_tcga_pub/case_lists/cases_TERT_mutation.txt

diff --git a/public/aml_ohsu_2022/data_mutations.txt b/public/aml_ohsu_2022/data_mutations.txt
index 70f19c9df2..1e700b5c53 100644
--- a/public/aml_ohsu_2022/data_mutations.txt
+++ b/public/aml_ohsu_2022/data_mutations.txt
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:8e28dd869683263bba9cf6bfe60069448839816513e2f925d1e06c79d3986d7f
-size 5444724
+oid sha256:3ea693d346b381a1ce4961f5d2951c67a4f132e16cb0406bcfc6da45edc03c38
+size 5416146
diff --git a/public/thca_tcga_pub/case_lists/cases_TERT_mutation.txt b/public/thca_tcga_pub/case_lists/cases_TERT_mutation.txt
new file mode 100755
index 0000000000..5985acf046
--- /dev/null
+++ b/public/thca_tcga_pub/case_lists/cases_TERT_mutation.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: thca_tcga_pub
+stable_id: thca_tcga_pub_tertp
+case_list_name: Samples with TERT promoter mutation
+case_list_description: Samples with TERT promoter mutation (384 samples)
+case_list_category: other
+case_list_ids: TCGA-BJ-A0YZ-01	TCGA-BJ-A0Z0-01	TCGA-BJ-A0Z2-01	TCGA-BJ-A0Z3-01	TCGA-BJ-A0Z9-01	TCGA-BJ-A0ZC-01	TCGA-BJ-A0ZE-01	TCGA-BJ-A0ZG-01	TCGA-BJ-A0ZH-01	TCGA-BJ-A0ZJ-01	TCGA-BJ-A18Y-01	TCGA-BJ-A18Z-01	TCGA-BJ-A192-01	TCGA-BJ-A28R-01	TCGA-BJ-A28S-01	TCGA-BJ-A28T-01	TCGA-BJ-A28V-01	TCGA-BJ-A28X-01	TCGA-BJ-A28Z-01	TCGA-BJ-A290-01	TCGA-BJ-A2N7-01	TCGA-BJ-A2N8-01	TCGA-BJ-A2N9-01	TCGA-BJ-A2NA-01	TCGA-BJ-A2P4-01	TCGA-BJ-A3EZ-01	TCGA-BJ-A3F0-01	TCGA-BJ-A3PR-01	TCGA-BJ-A3PT-01	TCGA-BJ-A3PU-01	TCGA-BJ-A45D-01	TCGA-BJ-A45E-01	TCGA-BJ-A45F-01	TCGA-BJ-A45G-01	TCGA-BJ-A45I-01	TCGA-BJ-A45J-01	TCGA-BJ-A45K-01	TCGA-BJ-A4O8-01	TCGA-BJ-A4O9-01	TCGA-CE-A13K-01	TCGA-CE-A27D-01	TCGA-CE-A3MD-01	TCGA-CE-A3ME-01	TCGA-CE-A482-01	TCGA-CE-A484-01	TCGA-CE-A485-01	TCGA-DE-A0XZ-01	TCGA-DE-A0Y2-01	TCGA-DE-A0Y3-01	TCGA-DE-A2OL-01	TCGA-DE-A3KN-01	TCGA-DE-A4M8-01	TCGA-DE-A4M9-01	TCGA-DJ-A13M-01	TCGA-DJ-A13O-01	TCGA-DJ-A13P-01	TCGA-DJ-A13R-01	TCGA-DJ-A13S-01	TCGA-DJ-A13T-01	TCGA-DJ-A13U-01	TCGA-DJ-A13V-01	TCGA-DJ-A13W-01	TCGA-DJ-A13X-01	TCGA-DJ-A1QD-01	TCGA-DJ-A1QE-01	TCGA-DJ-A1QF-01	TCGA-DJ-A1QG-01	TCGA-DJ-A1QH-01	TCGA-DJ-A1QI-01	TCGA-DJ-A1QL-01	TCGA-DJ-A1QM-01	TCGA-DJ-A1QN-01	TCGA-DJ-A1QO-01	TCGA-DJ-A1QQ-01	TCGA-DJ-A2PN-01	TCGA-DJ-A2PO-01	TCGA-DJ-A2PP-01	TCGA-DJ-A2PQ-01	TCGA-DJ-A2PR-01	TCGA-DJ-A2PS-01	TCGA-DJ-A2PT-01	TCGA-DJ-A2PU-01	TCGA-DJ-A2PV-01	TCGA-DJ-A2PW-01	TCGA-DJ-A2PX-01	TCGA-DJ-A2PY-01	TCGA-DJ-A2PZ-01	TCGA-DJ-A2Q0-01	TCGA-DJ-A2Q1-01	TCGA-DJ-A2Q2-01	TCGA-DJ-A2Q3-01	TCGA-DJ-A2Q4-01	TCGA-DJ-A2Q5-01	TCGA-DJ-A2Q6-01	TCGA-DJ-A2Q7-01	TCGA-DJ-A2Q8-01	TCGA-DJ-A2Q9-01	TCGA-DJ-A2QA-01	TCGA-DJ-A2QB-01	TCGA-DJ-A2QC-01	TCGA-DJ-A3UK-01	TCGA-DJ-A3UM-01	TCGA-DJ-A3UN-01	TCGA-DJ-A3UO-01	TCGA-DJ-A3UP-01	TCGA-DJ-A3UQ-01	TCGA-DJ-A3UR-01	TCGA-DJ-A3US-01	TCGA-DJ-A3UT-01	TCGA-DJ-A3UW-01	TCGA-DJ-A3UY-01	TCGA-DJ-A3V7-01	TCGA-DJ-A3VA-01	TCGA-DJ-A3VB-01	TCGA-DJ-A3VE-01	TCGA-DJ-A3VF-01	TCGA-DJ-A3VJ-01	TCGA-DJ-A3VK-01	TCGA-DJ-A3VL-01	TCGA-DJ-A3VM-01	TCGA-DJ-A4UL-01	TCGA-DJ-A4UP-01	TCGA-DJ-A4UT-01	TCGA-DJ-A4UW-01	TCGA-DJ-A4V0-01	TCGA-DJ-A4V2-01	TCGA-DJ-A4V4-01	TCGA-DJ-A4V5-01	TCGA-DO-A1JZ-01	TCGA-DO-A2HM-01	TCGA-E3-A3DY-01	TCGA-E3-A3DZ-01	TCGA-E3-A3E0-01	TCGA-E3-A3E1-01	TCGA-E3-A3E2-01	TCGA-E3-A3E3-01	TCGA-E3-A3E5-01	TCGA-E8-A242-01	TCGA-E8-A2EA-01	TCGA-E8-A413-01	TCGA-E8-A415-01	TCGA-E8-A416-01	TCGA-E8-A418-01	TCGA-E8-A419-01	TCGA-E8-A433-01	TCGA-E8-A436-01	TCGA-E8-A437-01	TCGA-E8-A44K-01	TCGA-E8-A44M-01	TCGA-EL-A3CL-01	TCGA-EL-A3CM-01	TCGA-EL-A3CN-01	TCGA-EL-A3CO-01	TCGA-EL-A3CP-01	TCGA-EL-A3CR-01	TCGA-EL-A3CS-01	TCGA-EL-A3CT-01	TCGA-EL-A3CU-01	TCGA-EL-A3CV-01	TCGA-EL-A3CW-01	TCGA-EL-A3CX-01	TCGA-EL-A3CY-01	TCGA-EL-A3CZ-01	TCGA-EL-A3D0-01	TCGA-EL-A3D1-01	TCGA-EL-A3D4-01	TCGA-EL-A3D5-01	TCGA-EL-A3D6-01	TCGA-EL-A3GO-01	TCGA-EL-A3GP-01	TCGA-EL-A3GQ-01	TCGA-EL-A3GR-01	TCGA-EL-A3GS-01	TCGA-EL-A3GU-01	TCGA-EL-A3GV-01	TCGA-EL-A3GW-01	TCGA-EL-A3GX-01	TCGA-EL-A3GY-01	TCGA-EL-A3GZ-01	TCGA-EL-A3H1-01	TCGA-EL-A3H2-01	TCGA-EL-A3H3-01	TCGA-EL-A3H4-01	TCGA-EL-A3H5-01	TCGA-EL-A3H7-01	TCGA-EL-A3H8-01	TCGA-EL-A3MW-01	TCGA-EL-A3MX-01	TCGA-EL-A3MY-01	TCGA-EL-A3MZ-01	TCGA-EL-A3N2-01	TCGA-EL-A3N3-01	TCGA-EL-A3T0-01	TCGA-EL-A3T2-01	TCGA-EL-A3T3-01	TCGA-EL-A3T6-01	TCGA-EL-A3T7-01	TCGA-EL-A3T8-01	TCGA-EL-A3T9-01	TCGA-EL-A3TA-01	TCGA-EL-A3TB-01	TCGA-EL-A3ZH-01	TCGA-EL-A3ZK-01	TCGA-EL-A3ZN-01	TCGA-EL-A3ZQ-01	TCGA-EL-A3ZR-01	TCGA-EL-A3ZT-01	TCGA-EL-A4JV-01	TCGA-EL-A4JW-01	TCGA-EL-A4JX-01	TCGA-EL-A4JZ-01	TCGA-EL-A4K0-01	TCGA-EL-A4K2-01	TCGA-EL-A4K4-01	TCGA-EL-A4K6-01	TCGA-EL-A4KD-01	TCGA-EL-A4KG-01	TCGA-EL-A4KH-01	TCGA-EL-A4KI-01	TCGA-EM-A1CT-01	TCGA-EM-A1CU-01	TCGA-EM-A1CV-01	TCGA-EM-A1CW-01	TCGA-EM-A1YA-01	TCGA-EM-A1YB-01	TCGA-EM-A1YC-01	TCGA-EM-A1YD-01	TCGA-EM-A1YE-01	TCGA-EM-A22I-01	TCGA-EM-A22J-01	TCGA-EM-A22K-01	TCGA-EM-A22L-01	TCGA-EM-A22M-01	TCGA-EM-A22N-01	TCGA-EM-A22O-01	TCGA-EM-A22P-01	TCGA-EM-A22Q-01	TCGA-EM-A2CJ-01	TCGA-EM-A2CK-01	TCGA-EM-A2CL-01	TCGA-EM-A2CN-01	TCGA-EM-A2CO-01	TCGA-EM-A2CP-01	TCGA-EM-A2CQ-01	TCGA-EM-A2CR-01	TCGA-EM-A2CT-01	TCGA-EM-A2CU-01	TCGA-EM-A2OV-01	TCGA-EM-A2OW-01	TCGA-EM-A2OX-01	TCGA-EM-A2OY-01	TCGA-EM-A2OZ-01	TCGA-EM-A2P0-01	TCGA-EM-A2P1-01	TCGA-EM-A2P2-01	TCGA-EM-A2P3-01	TCGA-EM-A3AI-01	TCGA-EM-A3AJ-01	TCGA-EM-A3AK-01	TCGA-EM-A3AL-01	TCGA-EM-A3AN-01	TCGA-EM-A3AO-01	TCGA-EM-A3AP-01	TCGA-EM-A3AQ-01	TCGA-EM-A3AR-01	TCGA-EM-A3FJ-01	TCGA-EM-A3FK-01	TCGA-EM-A3FL-01	TCGA-EM-A3FM-01	TCGA-EM-A3FN-01	TCGA-EM-A3FO-01	TCGA-EM-A3FP-01	TCGA-EM-A3FR-01	TCGA-EM-A3O3-01	TCGA-EM-A3O6-01	TCGA-EM-A3O7-01	TCGA-EM-A3O8-01	TCGA-EM-A3O9-01	TCGA-EM-A4FK-01	TCGA-EM-A4FM-01	TCGA-EM-A4FO-01	TCGA-EM-A4FQ-01	TCGA-EM-A4FR-01	TCGA-EM-A4FV-01	TCGA-EM-A4G1-01	TCGA-ET-A25G-01	TCGA-ET-A25I-01	TCGA-ET-A25J-01	TCGA-ET-A25K-01	TCGA-ET-A25O-01	TCGA-ET-A25R-01	TCGA-ET-A2MY-01	TCGA-ET-A2MZ-01	TCGA-ET-A2N0-01	TCGA-ET-A2N1-01	TCGA-ET-A2N4-01	TCGA-ET-A2N5-01	TCGA-ET-A39I-01	TCGA-ET-A39J-01	TCGA-ET-A39K-01	TCGA-ET-A39M-01	TCGA-ET-A39N-01	TCGA-ET-A39O-01	TCGA-ET-A39P-01	TCGA-ET-A39R-01	TCGA-ET-A39S-01	TCGA-ET-A39T-01	TCGA-ET-A3BN-01	TCGA-ET-A3BO-01	TCGA-ET-A3BP-01	TCGA-ET-A3BQ-01	TCGA-ET-A3BT-01	TCGA-ET-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\ No newline at end of file
diff --git a/public/thca_tcga_pub/data_clinical_patient.txt b/public/thca_tcga_pub/data_clinical_patient.txt
index 6adc521755..9dbcf4cc32 100644
--- a/public/thca_tcga_pub/data_clinical_patient.txt
+++ b/public/thca_tcga_pub/data_clinical_patient.txt
@@ -1,3 +1,3 @@
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diff --git a/public/thca_tcga_pub/data_mutations.txt b/public/thca_tcga_pub/data_mutations.txt
index 3823afd0e4..456b7c66ae 100644
--- a/public/thca_tcga_pub/data_mutations.txt
+++ b/public/thca_tcga_pub/data_mutations.txt
@@ -1,3 +1,3 @@
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