clean up requirements

.github/workflows/tests.yml

@@ -23,7 +23,7 @@ jobs:
       - uses: conda-incubator/setup-miniconda@v2
         with:
           activate-environment: pyglider
-          environment-file: environment.yml
+          environment-file: tests/environment.yml
           python-version: ${{ matrix.python-version }}
           channel-priority: strict
           use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!

docs/requirements.txt

@@ -1,15 +1,10 @@
-matplotlib
 numpy
 xarray
 dask
 netcdf4
-pyyaml
 gsw
 scipy
 pooch
-jinja2
-geojson
-simplekml
 bitstring
 pydata-sphinx-theme
 sphinx

environment.yml

@@ -4,19 +4,12 @@ channels:
   - defaults
 dependencies:
   - python
-  - matplotlib
   - numpy
   - pip
   - xarray
   - dask
   - netcdf4
-  - pyyaml
   - gsw
   - scipy
-  - jinja2
-  - geojson
-  - simplekml
-  - webcolors
   - bitstring
-  - pytest
   - pooch

requirements.txt

@@ -1,14 +1,8 @@
-matplotlib
 numpy
 xarray
 dask
 netcdf4
-pyyaml
 gsw
 scipy
-jinja2
-geojson
-simplekml
 bitstring
-pytest
 pooch

setup.py

@@ -3,6 +3,15 @@
 # Get the version from versioneer
 __version__ = "0.0.2"
 
+with open("./docs/requirements.txt", "r") as handle:
+    requirements_doc = [ld.strip() for ld in handle.read().splitlines() if ld.strip()]
+
+with open("./tests/requirements.txt", "r") as handle:
+    requirements_dev = [ld.strip() for ld in handle.read().splitlines() if ld.strip()]
+
+with open("./requirements.txt", "r") as handle:
+    requirements = [ld.strip() for ld in handle.read().splitlines() if ld.strip()]
+
 setup(name="pyglider",
       version=__version__,
       description="Glider data to netCDF translation in python",
@@ -11,18 +20,11 @@
       url="https://github.com/c-proof/pyglider.git",
       packages=find_packages(exclude=['tests']),
       python_requires='>=3.6',
-      install_requires=[
-          "matplotlib",
-          "numpy",
-          "xarray",
-          "dask",
-          "bitstring",
-          "netcdf4",
-          "geojson",
-          "gsw",
-          "scipy",
-          "pooch",
-          "pyyaml"
-      ],
+      install_requires=requirements,
+      extras_require={
+        "code_style": ["flake8<3.8.0,>=3.7.0", "black", "pre-commit==1.17.0"],
+        "testing": requirements_dev,
+        "docs": requirements_doc,
+      },
       zip_safe=True
       )

tests/environment.yml

@@ -0,0 +1,18 @@
+name: pyglider
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - python
+  - numpy
+  - pip
+  - xarray
+  - dask
+  - netcdf4
+  - gsw
+  - scipy
+  - jinja2
+  - bitstring
+  - pytest
+  - pooch
+  - matplotlib

tests/requirements.txt

@@ -0,0 +1,12 @@
+matplotlib
+numpy
+xarray
+dask
+netcdf4
+gsw
+scipy
+jinja2
+simplekml
+bitstring
+pytest
+pooch