This is a fork of DeepEC. Changes were made for integration with newer versions of E2P2.
Note: Size of the protein sequence input file should be adjusted according to the memory size of your computer. This source code was developed in Linux, and has been tested in Ubuntu 14.04 with Python 2.7, Python 3.4, Python 3.5 or Python 3.6. It should be noted that Python 3.7 is currently not supported.
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Clone the repository
git clone [email protected]:bxuecarnegie/deepec.git -
Create and activate a conda environment
conda env create -f environment.yml conda activate deepec
Note: This "conda" environment is only tested on an Linux-64 architecture. Please make sure you're running the most updated version of conda compatible with your system.
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Run DeepEC
python deepec.py -i ./example/test.fa -o ./output