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github_url:https://github.com/Project-MONAI/MONAI

Applications

.. currentmodule:: monai.apps

Datasets

.. autoclass:: MedNISTDataset
    :members:


.. autoclass:: DecathlonDataset
    :members:


.. autoclass:: TciaDataset
    :members:


.. autoclass:: CrossValidation
    :members:

Clara MMARs

.. autofunction:: download_mmar


.. autofunction:: load_from_mmar


.. autodata:: monai.apps.MODEL_DESC
    :annotation:

Utilities

.. autofunction:: check_hash


.. autofunction:: download_url


.. autofunction:: extractall


.. autofunction:: download_and_extract

Deepgrow

.. automodule:: monai.apps.deepgrow.dataset

.. autofunction:: create_dataset


.. automodule:: monai.apps.deepgrow.interaction

.. autoclass:: Interaction
    :members:


.. automodule:: monai.apps.deepgrow.transforms

.. autoclass:: AddInitialSeedPointd
    :members:

.. autoclass:: AddGuidanceSignald
    :members:

.. autoclass:: AddRandomGuidanced
    :members:

.. autoclass:: AddGuidanceFromPointsd
    :members:

.. autoclass:: SpatialCropForegroundd
    :members:

.. autoclass:: SpatialCropGuidanced
    :members:

.. autoclass:: RestoreLabeld
    :members:

.. autoclass:: ResizeGuidanced
    :members:

.. autoclass:: FindDiscrepancyRegionsd
    :members:

.. autoclass:: FindAllValidSlicesd
    :members:

.. autoclass:: Fetch2DSliced
    :members:

Pathology

.. automodule:: monai.apps.pathology.inferers

.. autoclass:: SlidingWindowHoVerNetInferer
    :members:


.. automodule:: monai.apps.pathology.losses.hovernet_loss

.. autoclass:: HoVerNetLoss
    :members:


.. automodule:: monai.apps.pathology.metrics

.. autoclass:: LesionFROC
    :members:


.. automodule:: monai.apps.pathology.utils

.. autofunction:: compute_multi_instance_mask

.. autofunction:: compute_isolated_tumor_cells

.. autoclass:: PathologyProbNMS
    :members:


.. automodule:: monai.apps.pathology.transforms.stain.array

.. autoclass:: ExtractHEStains
    :members:

.. autoclass:: NormalizeHEStains
    :members:


.. automodule:: monai.apps.pathology.transforms.stain.dictionary

.. autoclass:: ExtractHEStainsd
    :members:

.. autoclass:: NormalizeHEStainsd
    :members:


.. automodule:: monai.apps.pathology.transforms.post.array

.. autoclass:: GenerateSuccinctContour
    :members:

.. autoclass:: GenerateInstanceContour
    :members:

.. autoclass:: GenerateInstanceCentroid
    :members:

.. autoclass:: GenerateInstanceType
    :members:

.. autoclass:: Watershed
    :members:

.. autoclass:: GenerateWatershedMask
    :members:

.. autoclass:: GenerateInstanceBorder
    :members:

.. autoclass:: GenerateDistanceMap
    :members:

.. autoclass:: GenerateWatershedMarkers
    :members:

.. autoclass:: HoVerNetNuclearTypePostProcessing
    :members:

.. autoclass:: HoVerNetInstanceMapPostProcessing
    :members:


.. automodule:: monai.apps.pathology.transforms.post.dictionary

.. autoclass:: GenerateSuccinctContourd
    :members:

.. autoclass:: GenerateInstanceContourd
    :members:

.. autoclass:: GenerateInstanceCentroidd
    :members:

.. autoclass:: GenerateInstanceTyped
    :members:

.. autoclass:: Watershedd
    :members:

.. autoclass:: GenerateWatershedMaskd
    :members:

.. autoclass:: GenerateInstanceBorderd
    :members:

.. autoclass:: GenerateDistanceMapd
    :members:

.. autoclass:: GenerateWatershedMarkersd
    :members:

.. autoclass:: HoVerNetInstanceMapPostProcessingd
    :members:

.. autoclass:: HoVerNetNuclearTypePostProcessingd
    :members:

Detection

Hard Negative Sampler

.. automodule:: monai.apps.detection.utils.hard_negative_sampler
    :members:

RetinaNet Network

.. automodule:: monai.apps.detection.networks.retinanet_network
    :members:

RetinaNet Detector

.. automodule:: monai.apps.detection.networks.retinanet_detector
    :members:

Transforms

.. automodule:: monai.apps.detection.transforms.box_ops
    :members:

.. automodule:: monai.apps.detection.transforms.array
    :members:

.. automodule:: monai.apps.detection.transforms.dictionary
    :members:

Anchor

.. automodule:: monai.apps.detection.utils.anchor_utils
    :members:

Matcher

.. automodule:: monai.apps.detection.utils.ATSS_matcher
    :members:

Box coder

.. automodule:: monai.apps.detection.utils.box_coder
    :members:

Detection Utilities

.. automodule:: monai.apps.detection.utils.detector_utils
    :members:


.. automodule:: monai.apps.detection.utils.predict_utils
    :members:

Inference box selector

.. automodule:: monai.apps.detection.utils.box_selector
    :members:

Detection metrics

.. automodule:: monai.apps.detection.metrics.coco
    :members:

.. automodule:: monai.apps.detection.metrics.matching
    :members:

Reconstruction

FastMRIReader

.. autoclass:: monai.apps.reconstruction.fastmri_reader.FastMRIReader
  :members:

ConvertToTensorComplex

.. autofunction:: monai.apps.reconstruction.complex_utils.convert_to_tensor_complex

ComplexAbs

.. autofunction:: monai.apps.reconstruction.complex_utils.complex_abs

RootSumOfSquares

.. autofunction:: monai.apps.reconstruction.mri_utils.root_sum_of_squares

ComplexMul

.. autofunction:: monai.apps.reconstruction.complex_utils.complex_mul

ComplexConj

.. autofunction:: monai.apps.reconstruction.complex_utils.complex_conj

Auto3DSeg

.. automodule:: monai.apps.auto3dseg
  :members:
  :special-members: __call__
  :imported-members:

nnUNet

.. automodule:: monai.apps.nnunet.__main__


.. autoclass:: monai.apps.nnunet.nnUNetV2Runner
  :members: