diff --git a/pipes/WDL/tasks/tasks_nextstrain.wdl b/pipes/WDL/tasks/tasks_nextstrain.wdl index 5680b45db..593c5ce20 100644 --- a/pipes/WDL/tasks/tasks_nextstrain.wdl +++ b/pipes/WDL/tasks/tasks_nextstrain.wdl @@ -53,7 +53,7 @@ task nextclade_one_sample { File? gene_annotations_json String? dataset_name Int disk_size = 50 - String docker = "nextstrain/nextclade:3.8.2" + String docker = "nextstrain/nextclade:3.9.1" } String basename = basename(genome_fasta, ".fasta") command <<< @@ -144,7 +144,7 @@ task nextclade_many_samples { String basename File? genome_ids_setdefault_blank Int disk_size = 150 - String docker = "nextstrain/nextclade:3.8.2" + String docker = "nextstrain/nextclade:3.9.1" } command <<< set -e diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl index d4eb75ac1..dfd188868 100644 --- a/pipes/WDL/tasks/tasks_sarscov2.wdl +++ b/pipes/WDL/tasks/tasks_sarscov2.wdl @@ -10,7 +10,7 @@ task pangolin_one_sample { Float? max_ambig String? analysis_mode Boolean update_dbs_now=false - String docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.29" + String docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.30" } String basename = basename(genome_fasta, ".fasta") Int disk_size = 50 @@ -93,7 +93,7 @@ task pangolin_many_samples { String? analysis_mode Boolean update_dbs_now=false String basename - String docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.29" + String docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.30" } Int disk_size = 100 command <<< diff --git a/requirements-modules.txt b/requirements-modules.txt index 845f418a7..3c569e8ca 100644 --- a/requirements-modules.txt +++ b/requirements-modules.txt @@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre broadinstitute/ncbi-tools=2.10.7.10 nextstrain/base=build-20240318T173028Z andersenlabapps/ivar=1.3.1 -quay.io/staphb/pangolin=4.3.1-pdata-1.29 -nextstrain/nextclade=3.8.2 +quay.io/staphb/pangolin=4.3.1-pdata-1.30 +nextstrain/nextclade=3.9.1