diff --git a/pipes/WDL/tasks/tasks_megablast.wdl b/pipes/WDL/tasks/tasks_megablast.wdl index d93a359c1..afe9574c5 100755 --- a/pipes/WDL/tasks/tasks_megablast.wdl +++ b/pipes/WDL/tasks/tasks_megablast.wdl @@ -79,7 +79,7 @@ task lca_megablast { Int cpu = 16 Int disk_size_gb = 300 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } parameter_meta { trimmed_fasta: { diff --git a/pipes/WDL/tasks/tasks_metagenomics.wdl b/pipes/WDL/tasks/tasks_metagenomics.wdl index 32f0303bf..c30f31056 100644 --- a/pipes/WDL/tasks/tasks_metagenomics.wdl +++ b/pipes/WDL/tasks/tasks_metagenomics.wdl @@ -218,7 +218,7 @@ task kraken2 { Int? min_base_qual Int machine_mem_gb = 90 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } parameter_meta { @@ -345,7 +345,7 @@ task report_primary_kraken_taxa { File kraken_summary_report String focal_taxon = "Viruses" - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } String out_basename = basename(kraken_summary_report, '.txt') Int disk_size = 50 @@ -396,7 +396,7 @@ task filter_refs_to_found_taxa { File taxdump_tgz Int min_read_count = 100 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } String ref_basename = basename(taxid_to_ref_accessions_tsv, '.tsv') String hits_basename = basename(focal_report_tsv, '.tsv') @@ -447,7 +447,7 @@ task build_kraken2_db { Int? zstd_compression_level Int machine_mem_gb = 100 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } Int disk_size = 750 @@ -589,7 +589,7 @@ task blastx { File krona_taxonomy_db_tgz Int machine_mem_gb = 8 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } parameter_meta { @@ -679,7 +679,7 @@ task krona { Int? magnitude_column Int machine_mem_gb = 3 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } Int disk_size = 50 @@ -786,7 +786,7 @@ task filter_bam_to_taxa { String out_filename_suffix = "filtered" Int machine_mem_gb = 26 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } String out_basename = basename(classified_bam, ".bam") + "." + out_filename_suffix @@ -873,7 +873,7 @@ task kaiju { File krona_taxonomy_db_tgz # taxonomy/taxonomy.tab Int machine_mem_gb = 100 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } String input_basename = basename(reads_unmapped_bam, ".bam") diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl index 31278f662..c4627e3ac 100644 --- a/pipes/WDL/tasks/tasks_ncbi.wdl +++ b/pipes/WDL/tasks/tasks_ncbi.wdl @@ -1108,7 +1108,7 @@ task sequence_rename_by_species { String taxid File taxdump_tgz - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } command <<< set -e diff --git a/pipes/WDL/tasks/tasks_reports.wdl b/pipes/WDL/tasks/tasks_reports.wdl index 146915b44..a804e315b 100644 --- a/pipes/WDL/tasks/tasks_reports.wdl +++ b/pipes/WDL/tasks/tasks_reports.wdl @@ -551,7 +551,7 @@ task aggregate_metagenomics_reports { String aggregate_taxlevel_focus = "species" Int aggregate_top_N_hits = 5 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } parameter_meta { diff --git a/pipes/WDL/tasks/tasks_taxon_filter.wdl b/pipes/WDL/tasks/tasks_taxon_filter.wdl index 9b1ff62fc..69dfac95a 100644 --- a/pipes/WDL/tasks/tasks_taxon_filter.wdl +++ b/pipes/WDL/tasks/tasks_taxon_filter.wdl @@ -14,7 +14,7 @@ task deplete_taxa { Int cpu = 8 Int machine_mem_gb = 15 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } parameter_meta { @@ -113,7 +113,7 @@ task filter_to_taxon { String neg_control_prefixes_space_separated = "neg water NTC" Int machine_mem_gb = 15 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } # do this in two steps in case the input doesn't actually have "cleaned" in the name @@ -172,7 +172,7 @@ task build_lastal_db { File sequences_fasta Int machine_mem_gb = 7 - String docker = "quay.io/broadinstitute/viral-classify:2.2.4.2" + String docker = "quay.io/broadinstitute/viral-classify:2.2.5" } String db_name = basename(sequences_fasta, ".fasta") diff --git a/requirements-modules.txt b/requirements-modules.txt index 0f66fa1a8..beb95b165 100644 --- a/requirements-modules.txt +++ b/requirements-modules.txt @@ -1,6 +1,6 @@ broadinstitute/viral-core=2.4.0 broadinstitute/viral-assemble=2.3.6.1 -broadinstitute/viral-classify=2.2.4.2 +broadinstitute/viral-classify=2.2.5 broadinstitute/viral-phylo=2.3.6.0 broadinstitute/py3-bio=0.1.2 broadinstitute/beast-beagle-cuda=1.10.5pre