From cd14cce39ab84529df8ed94f6a90303b8d8210ed Mon Sep 17 00:00:00 2001
From: Danny Park <dpark@broadinstitute.org>
Date: Tue, 20 Aug 2024 09:37:39 -0400
Subject: [PATCH] syntax error again

---
 pipes/WDL/tasks/tasks_ncbi.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl
index 74b5bd0b7..0e3e95f72 100644
--- a/pipes/WDL/tasks/tasks_ncbi.wdl
+++ b/pipes/WDL/tasks/tasks_ncbi.wdl
@@ -616,7 +616,7 @@ task biosample_to_table {
     print("biosample rows ({})".format(len(biosample_attributes)))
 
     # write reformatted table
-    with open('~{base}.entities.tsv', wt) as outf:
+    with open('~{base}.entities.tsv', 'wt') as outf:
       writer = csv.DictWriter(outf, delimiter='\t', fieldnames=["~{sanitized_id_col}"]+biosample_headers, quoting=csv.QUOTE_MINIMAL)
       writer.writeheader()
       for row in biosample_attributes: