From 72264bc578756a03c3ba77d0fbe995a4e07a5b73 Mon Sep 17 00:00:00 2001 From: Lydia Andreyevna Krasilnikova Date: Tue, 12 Nov 2024 17:08:17 -0500 Subject: [PATCH] removed translate_augur_tree --- pipes/WDL/workflows/augur_from_mltree.wdl | 8 -------- 1 file changed, 8 deletions(-) diff --git a/pipes/WDL/workflows/augur_from_mltree.wdl b/pipes/WDL/workflows/augur_from_mltree.wdl index 0c24ee6a1..8ae58c7e0 100644 --- a/pipes/WDL/workflows/augur_from_mltree.wdl +++ b/pipes/WDL/workflows/augur_from_mltree.wdl @@ -67,18 +67,11 @@ workflow augur_from_mltree { tree = raw_tree, msa_or_vcf = msa_or_vcf } - call nextstrain.translate_augur_tree { - input: - tree = raw_tree, - nt_muts = ancestral_tree.nt_muts_json, - genbank_gb = genbank_gb - } if(defined(clades_tsv)) { call nextstrain.assign_clades_to_nodes { input: tree_nwk = raw_tree, nt_muts_json = ancestral_tree.nt_muts_json, - aa_muts_json = translate_augur_tree.aa_muts_json, ref_fasta = ref_fasta, clades_tsv = select_first([clades_tsv]) } @@ -90,7 +83,6 @@ workflow augur_from_mltree { node_data_jsons = select_all([ ancestral_traits.node_data_json, ancestral_tree.nt_muts_json, - translate_augur_tree.aa_muts_json, assign_clades_to_nodes.node_clade_data_json]), auspice_config = auspice_config }