From 0fd6c3b3b18074bd3c6b5a85c883550c315ab35c Mon Sep 17 00:00:00 2001
From: Daniel Park <dpark@broadinstitute.org>
Date: Thu, 19 Sep 2024 16:25:23 -0400
Subject: [PATCH] tag.json deprecated, long live pathogen.json

---
 pipes/WDL/tasks/tasks_nextstrain.wdl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pipes/WDL/tasks/tasks_nextstrain.wdl b/pipes/WDL/tasks/tasks_nextstrain.wdl
index 5b9764a5b..24d7023ea 100644
--- a/pipes/WDL/tasks/tasks_nextstrain.wdl
+++ b/pipes/WDL/tasks/tasks_nextstrain.wdl
@@ -71,10 +71,10 @@ task nextclade_one_sample {
             DATASET_ARG="--input-dataset ."
         python3<<CODE1
         import json, os
-        with open('tag.json', 'rt') as inf:
+        with open('pathogen.json', 'rt') as inf:
             datasetinfo = json.load(inf)
         with open('VERSION', 'wt') as outf:
-            outf.write(os.environ['NEXTCLADE_VERSION'] + "; name=" + datasetinfo['name'] + "; tag=" + datasetinfo['tag'] + "\n")
+            outf.write(os.environ['NEXTCLADE_VERSION'] + "; name=" + datasetinfo['attributes']['name'] + "; tag=" + datasetinfo['version']['tag'] + "\n")
         CODE1
         fi