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reshape vm defaults and subsampler default inputs
viral-pipelines CI #1589: Commit 3095833 pushed by dpark01
September 25, 2023 14:50 15m 4s subsampler-dp
September 25, 2023 14:50 15m 4s
Subsampler and augur workflow
viral-pipelines CI #1588: Pull request #483 synchronize by dpark01
September 22, 2023 16:59 14m 31s subsampler-dp
September 22, 2023 16:59 14m 31s
fix the broken --keep function
viral-pipelines CI #1587: Commit ef36163 pushed by dpark01
September 22, 2023 16:59 14m 25s subsampler-dp
September 22, 2023 16:59 14m 25s
Subsampler and augur workflow
viral-pipelines CI #1586: Pull request #483 synchronize by dpark01
September 22, 2023 15:07 15m 12s subsampler-dp
September 22, 2023 15:07 15m 12s
absolute path to scripts
viral-pipelines CI #1585: Commit ee01ab2 pushed by dpark01
September 22, 2023 15:07 16m 37s subsampler-dp
September 22, 2023 15:07 16m 37s
Subsampler and augur workflow
viral-pipelines CI #1584: Pull request #483 synchronize by dpark01
September 22, 2023 15:05 17m 41s subsampler-dp
September 22, 2023 15:05 17m 41s
expose ram as knob
viral-pipelines CI #1583: Commit 3f8c374 pushed by dpark01
September 22, 2023 15:05 14m 43s subsampler-dp
September 22, 2023 15:05 14m 43s
Subsampler and augur workflow
viral-pipelines CI #1582: Pull request #483 synchronize by dpark01
September 22, 2023 14:57 14m 48s subsampler-dp
September 22, 2023 14:57 14m 48s
work in execution platforms CWD instead of in /opt/subsampler which i…
viral-pipelines CI #1581: Commit 59ad5d5 pushed by dpark01
September 22, 2023 14:57 16m 33s subsampler-dp
September 22, 2023 14:57 16m 33s
Subsampler and augur workflow
viral-pipelines CI #1580: Pull request #483 synchronize by dpark01
September 22, 2023 14:30 16m 2s subsampler-dp
September 22, 2023 14:30 16m 2s
add progress statements
viral-pipelines CI #1579: Commit 194082c pushed by dpark01
September 22, 2023 14:30 17m 4s subsampler-dp
September 22, 2023 14:30 17m 4s
Subsampler and augur workflow
viral-pipelines CI #1578: Pull request #483 synchronize by dpark01
September 22, 2023 14:18 16m 4s subsampler-dp
September 22, 2023 14:18 16m 4s
oops, bump to wdl 1 command bock
viral-pipelines CI #1577: Commit 54ec1ab pushed by dpark01
September 22, 2023 14:18 18m 40s subsampler-dp
September 22, 2023 14:18 18m 40s
Subsampler and augur workflow
viral-pipelines CI #1576: Pull request #483 synchronize by dpark01
September 22, 2023 14:16 1m 0s subsampler-dp
September 22, 2023 14:16 1m 0s
bump hardware requests and add hardware utilization telemetry
viral-pipelines CI #1575: Commit cb01dc0 pushed by dpark01
September 22, 2023 14:16 1m 19s subsampler-dp
September 22, 2023 14:16 1m 19s
Subsampler and augur workflow
viral-pipelines CI #1574: Pull request #483 synchronize by dpark01
September 22, 2023 14:03 14m 12s subsampler-dp
September 22, 2023 14:03 14m 12s
crank memory, add zstd support, fail fast
viral-pipelines CI #1573: Commit 27eb2b3 pushed by dpark01
September 22, 2023 14:03 17m 19s subsampler-dp
September 22, 2023 14:03 17m 19s
Subsampler and augur workflow
viral-pipelines CI #1572: Pull request #483 synchronize by dpark01
September 22, 2023 13:17 17m 51s subsampler-dp
September 22, 2023 13:17 17m 51s
depart from snakemake and just run dag steps manually
viral-pipelines CI #1571: Commit bcbd13e pushed by dpark01
September 22, 2023 13:17 18m 28s subsampler-dp
September 22, 2023 13:17 18m 28s
Subsampler and augur workflow
viral-pipelines CI #1570: Pull request #483 synchronize by dpark01
September 21, 2023 13:58 14m 51s subsampler-dp
September 21, 2023 13:58 14m 51s
add counts to output and blank some default inputs
viral-pipelines CI #1569: Commit a8926ff pushed by dpark01
September 21, 2023 13:58 16m 44s subsampler-dp
September 21, 2023 13:58 16m 44s
Subsampler and augur workflow
viral-pipelines CI #1568: Pull request #483 synchronize by dpark01
September 21, 2023 13:22 14m 55s subsampler-dp
September 21, 2023 13:22 14m 55s
formatting
viral-pipelines CI #1567: Commit fc5c2c7 pushed by dpark01
September 21, 2023 13:22 14m 54s subsampler-dp
September 21, 2023 13:22 14m 54s
Subsampler and augur workflow
viral-pipelines CI #1566: Pull request #483 synchronize by dpark01
September 21, 2023 13:12 15m 9s subsampler-dp
September 21, 2023 13:12 15m 9s
make more subsampler inputs optional and add more typing to inputs
viral-pipelines CI #1565: Commit cc1b737 pushed by dpark01
September 21, 2023 13:12 14m 43s subsampler-dp
September 21, 2023 13:12 14m 43s
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