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main.bib
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@article{bingham2019pyro,
title={Pyro: Deep universal probabilistic programming},
author={Bingham, Eli and Chen, Jonathan P and Jankowiak, Martin and Obermeyer, Fritz and Pradhan, Neeraj and Karaletsos, Theofanis and Singh, Rohit and Szerlip, Paul and Horsfall, Paul and Goodman, Noah D},
journal={The Journal of Machine Learning Research},
volume={20},
number={1},
pages={973--978},
year={2019},
publisher={JMLR. org},
}
@misc{aksamentov2020nextclade,
title={Nextclade},
author={Aksamentov, Ivan and Neher, Richard},
url={https://github.com/nextstrain/nextclade},
}
@inproceedings{gorinova2020automatic,
title={Automatic reparameterisation of probabilistic programs},
author={Gorinova, Maria and Moore, Dave and Hoffman, Matthew},
booktitle={International Conference on Machine Learning},
pages={3648--3657},
year={2020},
organization={PMLR},
}
@inproceedings{paszke2017automatic,
title={Automatic differentiation in PyTorch},
author={Paszke, Adam and Gross, Sam and Chintala, Soumith and Chanan, Gregory and Yang, Edward and DeVito, Zachary and Lin, Zeming and Desmaison, Alban and Antiga, Luca and Lerer, Adam},
booktitle={NIPS-W},
year={2017},
}
@inproceedings{elbe2017gisaid,
author={Elbe, S. and Buckland-Merrett, G.},
year={2017},
title={Data, disease and diplomacy: GISAID’s innovative contribution to global health},
booktitle={Global Challenges},
section={1},
pages={33-46},
doi={DOI:10.1002/gch2.1018},
pmcid={PMCID: 31565258},
}
@inproceedings{rambaut2020dynamic,
title={A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology},
author={Rambaut, A. and Holmes, E.C. and O’Toole, Á and Hill, V. and McCrone, J. T. and Ruis, C. and du Plessis, L. and Pybus, O. G.},
year={2020},
booktitle={Nature Microbiology},
doi={DOI:10.1038/s41564-020-0770-5},
}
@inproceedings{neal2003slice,
author={Neal, Radford M.},
year={2003},
title={Slice Sampling},
booktitle={Annals of Statistics},
volume={31},
number={3},
pages={705–67},
}