From 643e49bb0a029541c57d0d966a8d6d871578f019 Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Wed, 9 Nov 2022 15:23:26 -0500 Subject: [PATCH] Fix typo in a filter name output by LiftoverVcf * One of the filters that LiftoverVcf outputs was misspelled: Should be "Intervals" instead of "Intevals" IndelStraddlesMultipleIntevals -> IndelStraddlesMultipleIntervals * fixes https://github.com/broadinstitute/picard/issues/1841 --- src/main/java/picard/vcf/LiftoverVcf.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/main/java/picard/vcf/LiftoverVcf.java b/src/main/java/picard/vcf/LiftoverVcf.java index dbfcd306e0..d991d8ae9f 100644 --- a/src/main/java/picard/vcf/LiftoverVcf.java +++ b/src/main/java/picard/vcf/LiftoverVcf.java @@ -228,7 +228,7 @@ public class LiftoverVcf extends CommandLineProgram { * Filter name to use when an indel cannot be lifted over since it straddles two intervals in a chain which means * that it is unclear what are the right alleles to be used. */ - public static final String FILTER_INDEL_STRADDLES_TWO_INTERVALS = "IndelStraddlesMultipleIntevals"; + public static final String FILTER_INDEL_STRADDLES_TWO_INTERVALS = "IndelStraddlesMultipleIntervals"; /** * Filters to be added to the REJECT file. @@ -584,4 +584,4 @@ private void tryToAddVariant(final VariantContext vc, final ReferenceSequence re addAndTrack(vc, source); } } -} \ No newline at end of file +}