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Additional InferCNV Examples
Brian Haas edited this page Oct 31, 2018
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Additional InferCNV examples can be found as indicated below:
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Melanoma derived from: Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science. 2016
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Oligodendroglioma derived from: Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma Nature, November 2016
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Pediatric midline gliomas derived from: Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science. 2018
- InferCNV Home
- Quick Start
- Installing inferCNV
- Running InferCNV
- Applying Noise Filters
- Predicting CNV via HMM
- Bayesian Mixture Model
- Tumor heterogeneity - define tumor subclusters
- Interpreting the Figure
- Inputs to InferCNV
- Outputs from InferCNV
- More inferCNV example data sets
- Using 10x data
- Interactively navigating data using the Next Generation Heatmap Viewer
- Extracting HMM features
- FAQ and common issues