From 357596299e21aa55b90ce4bced5b4f6cf5b9309c Mon Sep 17 00:00:00 2001 From: ldgauthier Date: Wed, 15 Dec 2021 10:06:13 -0500 Subject: [PATCH] Update AS_RMSMappingQuality.java --- .../walkers/annotator/allelespecific/AS_RMSMappingQuality.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/allelespecific/AS_RMSMappingQuality.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/allelespecific/AS_RMSMappingQuality.java index daac6e9e057..1660e3ab553 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/allelespecific/AS_RMSMappingQuality.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/allelespecific/AS_RMSMappingQuality.java @@ -187,7 +187,7 @@ protected void parseRawDataString(final ReducibleAnnotationData myData) * Takes combined raw annotation data sums, and calculates per allele the average root mean squared from the raw data * using expected Allele Depth counts data. * - * Will output delineated doubles in the format: sqrt(TotalAllele1RMS/Allele1Depth)|sqrt(TotalAllele1RMS/Allele1Depth)|... + * Will output delimited doubles in the format: sqrt(TotalAllele1RMS/Allele1Depth)|sqrt(TotalAllele2RMS/Allele2Depth)|... */ @Override @SuppressWarnings({"unchecked", "rawtypes"})//FIXME generics here blow up