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fixed a bug in CalculateContamination when contamination is zero #5971

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merged 1 commit into from
May 29, 2019

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davidbenjamin
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@takutosato This fixes a bug that Scott Carter found.

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codecov bot commented May 28, 2019

Codecov Report

Merging #5971 into master will decrease coverage by 6.777%.
The diff coverage is 100%.

@@               Coverage Diff               @@
##              master     #5971       +/-   ##
===============================================
- Coverage     86.929%   80.152%   -6.777%     
+ Complexity     32714     31026     -1688     
===============================================
  Files           2013      2013               
  Lines         151268    151268               
  Branches       16604     16604               
===============================================
- Hits          131496    121245    -10251     
- Misses         13718     24175    +10457     
+ Partials        6054      5848      -206
Impacted Files Coverage Δ Complexity Δ
...ools/walkers/contamination/ContaminationModel.java 87.5% <100%> (ø) 39 <0> (ø) ⬇️
...dorientation/CollectF1R2CountsIntegrationTest.java 0.714% <0%> (-99.286%) 1% <0%> (-14%)
...kers/filters/VariantFiltrationIntegrationTest.java 0.826% <0%> (-99.174%) 1% <0%> (-25%)
.../walkers/bqsr/BaseRecalibratorIntegrationTest.java 1.031% <0%> (-98.969%) 1% <0%> (-7%)
...s/variantutils/VariantsToTableIntegrationTest.java 1.042% <0%> (-98.958%) 1% <0%> (-21%)
...ers/vqsr/FilterVariantTranchesIntegrationTest.java 1.053% <0%> (-98.947%) 1% <0%> (-5%)
...on/FindBreakpointEvidenceSparkIntegrationTest.java 1.754% <0%> (-98.246%) 1% <0%> (-6%)
...bender/tools/spark/PileupSparkIntegrationTest.java 2.041% <0%> (-97.959%) 2% <0%> (-13%)
...tute/hellbender/tools/FlagStatIntegrationTest.java 2.083% <0%> (-97.917%) 1% <0%> (-5%)
...rs/variantutils/SelectVariantsIntegrationTest.java 0.25% <0%> (-97.75%) 1% <0%> (-70%)
... and 157 more

@davidbenjamin davidbenjamin merged commit a47aa22 into master May 29, 2019
@davidbenjamin davidbenjamin deleted the debug_scott branch May 29, 2019 03:23
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2 participants