LocusWalkerSpark drops intervals with no reads#5222

Merged

tomwhite merged 9 commits intomasterfrom tw_ll_CollectAllelicCountsSpark

Oct 8, 2018

+382-1

Commits on Oct 2, 2018

First cut, not fully implemented.

LeeTL1220
authored and
tomwhite
committed
Spark version of collect allelic counts spark.

LeeTL1220
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tomwhite
committed
Tests not passing yet.

LeeTL1220
authored and
tomwhite
committed
Possible bugfix needed for LocusWalkerSpark.

LeeTL1220
authored and
tomwhite
committed
Added TODO regarding notes on bugfix.

LeeTL1220
authored and
tomwhite
committed
Fixing compile error

LeeTL1220
authored and
tomwhite
committed
Make CollectAllelicCountsSpark run again. Reproduced failing test in #3823
tomwhite
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Remove old TODOs
tomwhite
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Add ExampleLocusWalkerSpark.java and test
tomwhite
committed