From 13b47a5e941976d92584272d0521839d74561523 Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Wed, 3 Oct 2018 12:51:51 -0400 Subject: [PATCH 1/7] Change raw MQ to a tuple of (sumSquaredMQs, totalDepth) for better accuracy where there are lots of uninformative reads --- .../hellbender/engine/FeatureDataSource.java | 10 +- .../walkers/annotator/RMSMappingQuality.java | 144 +- .../walkers/variantutils/ReblockGVCF.java | 13 +- .../utils/variant/GATKVCFConstants.java | 3 +- .../utils/variant/GATKVCFHeaderLines.java | 7 +- .../GenomicsDBImportIntegrationTest.java | 77 +- .../walkers/CombineGVCFsIntegrationTest.java | 15 +- .../walkers/GenotypeGVCFsIntegrationTest.java | 38 +- .../annotator/RMSMappingQualityUnitTest.java | 72 +- .../ReblockGVCFIntegrationTest.java | 2 +- .../variantutils/ReblockGVCFUnitTest.java | 4 +- .../large/testProductionGVCF.expected.g.vcf | 3 + .../testProductionGVCF.expected.g.vcf.gz | 3 - ...ed.testGVCFMode.gatk4.alleleSpecific.g.vcf | 516 +- ...estGVCFMode.gatk4.alleleSpecific.g.vcf.idx | Bin 0 -> 863 bytes .../expected.testGVCFMode.gatk4.g.vcf | 516 +- .../expected.testGVCFMode.gatk4.g.vcf.idx | Bin 848 -> 848 bytes ...testGenotypeGivenAllelesMode.gatk4.vcf.idx | Bin 478 -> 430 bytes .../YRIoffspring.chr20snippet.g.vcf | 10858 ++++++++++++++ .../YRIoffspring.chr20snippet.g.vcf.idx | Bin 0 -> 42477 bytes .../CombineGVCFs/newMQcalc.combined.g.vcf | 11696 +++++++++++++++ .../CombineGVCFs/newMQcalc.combined.g.vcf.idx | Bin 0 -> 844 bytes .../GenomicsDBImport/newMQcalc.combined.g.vcf | 11613 +++++++++++++++ .../newMQcalc.combined.g.vcf.idx | Bin 0 -> 42528 bytes .../GenotypeGVCFs/newMQcalc.combined.g.vcf | 11806 ++++++++++++++++ .../newMQcalc.combined.g.vcf.idx | Bin 0 -> 42466 bytes .../newMQcalc.combined.genotyped.vcf | 475 + .../newMQcalc.combined.genotyped.vcf.idx | Bin 0 -> 12143 bytes .../newMQcalc.singleSample.genotyped.vcf | 289 + .../walkers/GenotypeGVCFs/vidmap.updated.json | 318 + .../testJustOneSample.expected.g.vcf | 9 +- .../testNonRefADCorrection.expected.g.vcf | 6 +- .../testOneSampleAsForGnomAD.expected.g.vcf | 11 +- .../testutils/VariantContextTestUtils.java | 1 - 34 files changed, 47858 insertions(+), 647 deletions(-) create mode 100644 src/test/resources/large/testProductionGVCF.expected.g.vcf delete mode 100644 src/test/resources/large/testProductionGVCF.expected.g.vcf.gz create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf.idx create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf.idx create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/newMQcalc.combined.g.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/newMQcalc.combined.g.vcf.idx create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenomicsDBImport/newMQcalc.combined.g.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenomicsDBImport/newMQcalc.combined.g.vcf.idx create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.combined.g.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.combined.g.vcf.idx create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.combined.genotyped.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.combined.genotyped.vcf.idx create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.singleSample.genotyped.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/vidmap.updated.json diff --git a/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java b/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java index b25da688d91..ff50d96ce43 100644 --- a/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java +++ b/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java @@ -1,5 +1,6 @@ package org.broadinstitute.hellbender.engine; +import com.netflix.servo.util.VisibleForTesting; import htsjdk.samtools.SAMSequenceDictionary; import htsjdk.samtools.util.IOUtil; import htsjdk.tribble.*; @@ -24,6 +25,7 @@ import com.intel.genomicsdb.reader.GenomicsDBFeatureReader; import com.googlecode.protobuf.format.JsonFormat; import com.intel.genomicsdb.model.GenomicsDBVidMapProto; +import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; import java.io.File; import java.io.IOException; @@ -368,7 +370,8 @@ private static FeatureReader getFeatureReader(final Featu } } - private static FeatureReader getGenomicsDBFeatureReader(final String path, final File reference) { + @VisibleForTesting + public static FeatureReader getGenomicsDBFeatureReader(final String path, final File reference) { if (!isGenomicsDBPath(path)) { throw new IllegalArgumentException("Trying to create a GenomicsDBReader from a non-GenomicsDB input"); } @@ -463,9 +466,10 @@ private static GenomicsDBExportConfiguration.ExportConfiguration createExportCon final HashMap fieldNameToIndexInVidFieldsList = getFieldNameToListIndexInProtobufVidMappingObject(vidMapPB); - //Example: set MQ combine operation to median (default is also median, but this is just an example) vidMapPB = updateINFOFieldCombineOperation(vidMapPB, fieldNameToIndexInVidFieldsList, - "MQ", "median"); + GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "element_wise_sum"); + + if (vidMapPB != null) { //Use rebuilt vidMap in exportConfiguration //NOTE: this does NOT update the JSON file, the vidMapPB is a temporary structure that's passed to diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQuality.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQuality.java index eb49a7096b5..a998c1c3823 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQuality.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQuality.java @@ -8,6 +8,8 @@ import htsjdk.variant.vcf.VCFConstants; import htsjdk.variant.vcf.VCFInfoHeaderLine; import htsjdk.variant.vcf.VCFStandardHeaderLines; +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; import org.broadinstitute.barclay.help.DocumentedFeature; import org.broadinstitute.hellbender.engine.ReferenceContext; import org.broadinstitute.hellbender.exceptions.UserException; @@ -17,6 +19,7 @@ import org.broadinstitute.hellbender.utils.Utils; import org.broadinstitute.hellbender.utils.genotyper.ReadLikelihoods; import org.broadinstitute.hellbender.utils.help.HelpConstants; +import org.broadinstitute.hellbender.utils.logging.OneShotLogger; import org.broadinstitute.hellbender.utils.read.GATKRead; import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; import org.broadinstitute.hellbender.utils.variant.GATKVCFHeaderLines; @@ -30,6 +33,8 @@ * *

This annotation provides an estimation of the overall mapping quality of reads supporting a variant call, averaged over all samples in a cohort.

* + *

The raw data format for this annotation consists of a list of two entries: the sum of the squared mapping qualities and the number of reads across variant (not homRef) genotypes

+ * *

Statistical notes

*

The root mean square is equivalent to the mean of the mapping qualities plus the standard deviation of the mapping qualities.

* @@ -41,10 +46,16 @@ */ @DocumentedFeature(groupName=HelpConstants.DOC_CAT_ANNOTATORS, groupSummary=HelpConstants.DOC_CAT_ANNOTATORS_SUMMARY, summary="Root mean square of the mapping quality of reads across all samples (MQ)") public final class RMSMappingQuality extends InfoFieldAnnotation implements StandardAnnotation, ReducibleAnnotation { + private static final OneShotLogger logger = new OneShotLogger(RMSMappingQuality.class); private static final RMSMappingQuality instance = new RMSMappingQuality(); + public static final int NUM_LIST_ENTRIES = 2; + public static final int SUM_OF_SQUARES_INDEX = 0; + public static final int TOTAL_DEPTH_INDEX = 1; @Override - public String getRawKeyName() { return GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY;} + public String getRawKeyName() { return GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY;} //new key for the two-value MQ data to prevent version mismatch catastrophes + + public static String getDeprecatedRawKeyName() { return GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY;} //new key for the two-value MQ data to prevent version mismatch catastrophes @Override public List getKeyNames() { @@ -74,9 +85,9 @@ public Map annotateRawData(final ReferenceContext ref, } final Map annotations = new HashMap<>(); - final ReducibleAnnotationData myData = new ReducibleAnnotationData<>(null); + final ReducibleAnnotationData> myData = new ReducibleAnnotationData<>(null); calculateRawData(vc, likelihoods, myData); - final String annotationString = formattedValue((double) myData.getAttributeMap().get(Allele.NO_CALL)); + final String annotationString = makeRawAnnotationString(vc.getAlleles(), myData.getAttributeMap()); annotations.put(getRawKeyName(), annotationString); return annotations; } @@ -90,7 +101,6 @@ public Map combineRawData(final List vcAlleles, final Li for (final ReducibleAnnotationData currentValue : annotationList) { parseRawDataString(currentValue); combineAttributeMap(currentValue, combinedData); - } final Map annotations = new HashMap<>(); String annotationString = makeRawAnnotationString(vcAlleles, combinedData.getAttributeMap()); @@ -98,34 +108,67 @@ public Map combineRawData(final List vcAlleles, final Li return annotations; } - public String makeRawAnnotationString(final List vcAlleles, final Map perAlleleData) { - return String.format("%.2f", perAlleleData.get(Allele.NO_CALL)); + public String makeRawAnnotationString(final List vcAlleles, final Map> perAlleleData) { + return String.format("%d,%d", perAlleleData.get(Allele.NO_CALL).get(0), perAlleleData.get(Allele.NO_CALL).get(1)); } @Override @SuppressWarnings({"unchecked", "rawtypes"})//FIXME generics here blow up public Map finalizeRawData(final VariantContext vc, final VariantContext originalVC) { - if (!vc.hasAttribute(getRawKeyName())) + String rawMQdata; + if (vc.hasAttribute(getRawKeyName())) { + rawMQdata = vc.getAttributeAsString(getRawKeyName(), null); + } + else if (vc.hasAttribute(getDeprecatedRawKeyName())) { + rawMQdata = vc.getAttributeAsString(getDeprecatedRawKeyName(), null); + //the original version of ReblockGVCF produces a different MQ format -- try to handle that gracefully here just in case those files go through GenotypeGVCFs + if (vc.hasAttribute("MQ_DP")) { + logger.warn("Presence of MQ_DP key indicates that this tool may be running on an older output of ReblockGVCF " + + "that may not have compatible annotations with this GATK version. Attempting to reformat MQ data."); + final String rawMQdepth = vc.getAttributeAsString("MQ_DP",null); + if (rawMQdepth == null) { + throw new UserException.BadInput("MQ annotation data is not properly formatted. This version expects an " + + "int tuple of sum of squared MQ values and total reads over variant genotypes."); + } + rawMQdata = Math.round(Double.parseDouble(rawMQdata)) + "," + rawMQdepth; //deprecated format was double so it needs to be converted to int + } + else { + logger.warn("MQ annotation data is not properly formatted. This GATK version expects key " + + getRawKeyName() + " with an int tuple of sum of squared MQ values and total reads over variant " + + "genotypes as the value. Attempting to use deprecated MQ calculation."); + final int numOfReads = getNumOfReads(vc, null); + rawMQdata = Math.round(Double.parseDouble(rawMQdata)) + "," + numOfReads; //deprecated format was double so it needs to be converted to int + } + } + else { return new HashMap<>(); - String rawMQdata = vc.getAttributeAsString(getRawKeyName(),null); - if (rawMQdata == null) + } + if (rawMQdata == null) { return new HashMap<>(); + } - ReducibleAnnotationData myData = new ReducibleAnnotationData(rawMQdata); + ReducibleAnnotationData> myData = new ReducibleAnnotationData(rawMQdata); parseRawDataString(myData); - String annotationString = makeFinalizedAnnotationString(getNumOfReads(vc, null), myData.getAttributeMap()); + final String annotationString = makeFinalizedAnnotationString(myData.getAttribute(Allele.NO_CALL).get(TOTAL_DEPTH_INDEX), myData.getAttribute(Allele.NO_CALL).get(SUM_OF_SQUARES_INDEX)); return Collections.singletonMap(getKeyNames().get(0), annotationString); } - public String makeFinalizedAnnotationString(final int numOfReads, final Map perAlleleData) { - return String.format("%.2f", Math.sqrt(perAlleleData.get(Allele.NO_CALL)/numOfReads)); + public String makeFinalizedAnnotationString(final int numOfReads, final int sumOfSquaredMQs) { + return String.format("%.2f", Math.sqrt(sumOfSquaredMQs/(double)numOfReads)); } - public void combineAttributeMap(ReducibleAnnotationData toAdd, ReducibleAnnotationData combined) { + /** + * Combine the int tuples: sum of squared mapping quality and read counts over variant genotypes + * Since this is not an allele-specific annotation, store the result with the NO_CALL allele key. + * @param toAdd new data + * @param combined passed in as previous data, modified to store the combined result + */ + public void combineAttributeMap(ReducibleAnnotationData> toAdd, ReducibleAnnotationData> combined) { if (combined.getAttribute(Allele.NO_CALL) != null) { - combined.putAttribute(Allele.NO_CALL, combined.getAttribute(Allele.NO_CALL) + toAdd.getAttribute(Allele.NO_CALL)); + combined.putAttribute(Allele.NO_CALL, Arrays.asList(combined.getAttribute(Allele.NO_CALL).get(0) + toAdd.getAttribute(Allele.NO_CALL).get(0), + combined.getAttribute(Allele.NO_CALL).get(1) + toAdd.getAttribute(Allele.NO_CALL).get(1))); } else { combined.putAttribute(Allele.NO_CALL, toAdd.getAttribute(Allele.NO_CALL)); } @@ -135,14 +178,19 @@ public void combineAttributeMap(ReducibleAnnotationData toAdd, Reducible public void calculateRawData(final VariantContext vc, final ReadLikelihoods likelihoods, final ReducibleAnnotationData rawAnnotations){ - //put this as a double, like GATK3.5 - final double squareSum = IntStream.range(0, likelihoods.numberOfSamples()).boxed() - .flatMap(s -> likelihoods.sampleReads(s).stream()) - .map(GATKRead::getMappingQuality) - .filter(mq -> mq != QualityUtils.MAPPING_QUALITY_UNAVAILABLE) - .mapToDouble(mq -> mq * mq).sum(); - - rawAnnotations.putAttribute(Allele.NO_CALL, squareSum); + //GATK3.5 had a double, but change this to an int for the tuple representation (square sum, read count) + int squareSum = 0; + int numReadsUsed = 0; + for (int i = 0; i < likelihoods.numberOfSamples(); i++) { + for (final GATKRead read : likelihoods.sampleReads(i)) { + int mq = read.getMappingQuality(); + if (mq != QualityUtils.MAPPING_QUALITY_UNAVAILABLE) { + squareSum += mq * mq; + numReadsUsed++; + } + } + } + rawAnnotations.putAttribute(Allele.NO_CALL, Arrays.asList(squareSum, numReadsUsed)); } @Override @@ -155,9 +203,9 @@ public Map annotate(final ReferenceContext ref, } final Map annotations = new HashMap<>(); - final ReducibleAnnotationData myData = new ReducibleAnnotationData<>(null); + final ReducibleAnnotationData> myData = new ReducibleAnnotationData<>(null); calculateRawData(vc, likelihoods, myData); - final String annotationString = makeFinalizedAnnotationString(getNumOfReads(vc, likelihoods), myData.getAttributeMap()); + final String annotationString = makeFinalizedAnnotationString(myData.getAttribute(Allele.NO_CALL).get(TOTAL_DEPTH_INDEX), myData.getAttribute(Allele.NO_CALL).get(SUM_OF_SQUARES_INDEX)); annotations.put(getKeyNames().get(0), annotationString); return annotations; } @@ -168,9 +216,10 @@ static String formattedValue(double rms) { } /** - * converts {@link GATKVCFConstants#RAW_RMS_MAPPING_QUALITY_KEY} into {@link VCFConstants#RMS_MAPPING_QUALITY_KEY} annotation if present + * converts {@link GATKVCFConstants#RAW_MAPPING_QUALITY_WITH_DEPTH_KEY} into {@link VCFConstants#RMS_MAPPING_QUALITY_KEY} annotation if present + * NOTE: this is currently only used by HaplotypeCaller in VCF mode * @param vc which potentially contains rawMQ - * @return if vc contained {@link GATKVCFConstants#RAW_RMS_MAPPING_QUALITY_KEY} it will be replaced with {@link VCFConstants#RMS_MAPPING_QUALITY_KEY} + * @return if vc contained {@link GATKVCFConstants#RAW_MAPPING_QUALITY_WITH_DEPTH_KEY} it will be replaced with {@link VCFConstants#RMS_MAPPING_QUALITY_KEY} * otherwise return the original vc */ public VariantContext finalizeRawMQ(final VariantContext vc) { @@ -178,9 +227,8 @@ public VariantContext finalizeRawMQ(final VariantContext vc) { if (rawMQdata == null) { return vc; } else { - final double squareSum = parseRawDataString(rawMQdata); - final int numOfReads = getNumOfReads(vc, null); - final double rms = Math.sqrt(squareSum / (double)numOfReads); + final List SSQMQandDP = parseRawDataString(rawMQdata); + final double rms = Math.sqrt(SSQMQandDP.get(SUM_OF_SQUARES_INDEX) / (double)SSQMQandDP.get(TOTAL_DEPTH_INDEX)); final String finalizedRMSMAppingQuality = formattedValue(rms); return new VariantContextBuilder(vc) .rmAttribute(getRawKeyName()) @@ -189,24 +237,20 @@ public VariantContext finalizeRawMQ(final VariantContext vc) { } } - protected void parseRawDataString(ReducibleAnnotationData myData) { - final String rawDataString = myData.getRawData(); - String[] rawMQdataAsStringVector; - rawMQdataAsStringVector = rawDataString.split(","); - double squareSum = Double.parseDouble(rawMQdataAsStringVector[0]); - myData.putAttribute(Allele.NO_CALL, squareSum); + protected void parseRawDataString(ReducibleAnnotationData> myData) { + myData.putAttribute(Allele.NO_CALL, parseRawDataString(myData.getRawData())); } //TODO once the AS annotations have been added genotype gvcfs this can be removed for a more generic approach - private static double parseRawDataString(String rawDataString) { + private static List parseRawDataString(String rawDataString) { try { - /* - * TODO: this is copied from gatk3 where it ignored all but the first value, we should figure out if this is - * the right thing to do or if it should just convert the string without trying to split it and fail if - * there is more than one value - */ - final double squareSum = Double.parseDouble(rawDataString.split(",")[0]); - return squareSum; + final String[] parsed = rawDataString.split(","); + if (parsed.length != NUM_LIST_ENTRIES) { + throw new UserException.BadInput("Raw value for annotation has " + parsed.length + " values, expected " + NUM_LIST_ENTRIES); + } + final int squareSum = Integer.parseInt(parsed[SUM_OF_SQUARES_INDEX]); + final int totalDP = Integer.parseInt(parsed[TOTAL_DEPTH_INDEX]); + return Arrays.asList(squareSum,totalDP); } catch (final NumberFormatException e) { throw new UserException.BadInput("malformed " + GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY + " annotation: " + rawDataString); } @@ -215,14 +259,22 @@ private static double parseRawDataString(String rawDataString) { /** * - * @return the number of reads at the given site, calculated as InfoField {@link VCFConstants#DEPTH_KEY} minus the + * @return the number of reads at the given site, trying first {@Link GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY}, + * falling back to calculating the value as InfoField {@link VCFConstants#DEPTH_KEY} minus the * format field {@link GATKVCFConstants#MIN_DP_FORMAT_KEY} or DP of each of the HomRef genotypes at that site. - * Will fall back to calculating the reads from the stratifiedContexts then AlleleLikelyhoods data if provided. + * If neither of those is possible, will fall back to calculating the reads from the ReadLikelihoods data if provided. * @throws UserException.BadInput if the {@link VCFConstants#DEPTH_KEY} is missing or if the calculated depth is <= 0 */ @VisibleForTesting static int getNumOfReads(final VariantContext vc, final ReadLikelihoods likelihoods) { + if(vc.hasAttribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)) { + List MQtuple = vc.getAttributeAsIntList(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY,0); + if (MQtuple.get(TOTAL_DEPTH_INDEX) > 0) { + return MQtuple.get(TOTAL_DEPTH_INDEX); + } + } + int numOfReads = 0; if (vc.hasAttribute(VCFConstants.DEPTH_KEY)) { numOfReads = vc.getAttributeAsInt(VCFConstants.DEPTH_KEY, -1); diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java index 5cdb257ea7b..913ecb5e156 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java @@ -149,7 +149,8 @@ public void onTraversalStart() { headerLines.add(VCFStandardHeaderLines.getInfoLine(VCFConstants.DEPTH_KEY)); // needed for gVCFs without DP tags headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.RAW_QUAL_APPROX_KEY)); headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.VARIANT_DEPTH_KEY)); - headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.MAPPING_QUALITY_DEPTH)); + headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); + headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.MAPPING_QUALITY_DEPTH)); //NOTE: this is deprecated, but keep until we reprocess all GVCFs if ( dbsnp.dbsnp != null ) { VCFStandardHeaderLines.addStandardInfoLines(headerLines, true, VCFConstants.DBSNP_KEY); @@ -404,8 +405,14 @@ protected VariantContext cleanUpHighQualityVariant(final VariantContext result, genotypesArray.add(g); } - //we're going to approximate MQ_DP with the site-level DP (should be informative and uninformative reads), which is pretty safe because it will only differ if reads are missing MQ - attrMap.put(GATKVCFConstants.MAPPING_QUALITY_DEPTH, originalVC.getAttributeAsInt(VCFConstants.DEPTH_KEY,0)); + //we're going to approximate depth for MQ calculation with the site-level DP (should be informative and uninformative reads), which is pretty safe because it will only differ if reads are missing MQ + final Double rawMqValue = originalVC.hasAttribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY) ? + originalVC.getAttributeAsDouble(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, 0) : + originalVC.getAttributeAsDouble(VCFConstants.RMS_MAPPING_QUALITY_KEY, 60.0) * + originalVC.getAttributeAsInt(VCFConstants.DEPTH_KEY,0); + attrMap.put(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, + String.format("%.2f,%d", rawMqValue, originalVC.getAttributeAsInt(VCFConstants.DEPTH_KEY,0))); + attrMap.put(GATKVCFConstants.MAPPING_QUALITY_DEPTH, originalVC.getAttributeAsInt(VCFConstants.DEPTH_KEY,0)); //NOTE: this annotation is deprecated, but keep it here so we don't have to reprocess gnomAD v3 GVCFs again if(allelesNeedSubsetting) { List newAlleleSet = new ArrayList<>(); diff --git a/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFConstants.java b/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFConstants.java index db2474e937b..b522056aff1 100644 --- a/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFConstants.java +++ b/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFConstants.java @@ -20,7 +20,8 @@ public final class GATKVCFConstants { public static final String ALLELE_SPECIFIC_PREFIX = "AS_"; public static final String AS_FILTER_STATUS_KEY = "AS_FilterStatus"; public static final String RAW_RMS_MAPPING_QUALITY_KEY = "RAW_MQ"; - public static final String MAPPING_QUALITY_DEPTH = "MQ_DP"; + public static final String MAPPING_QUALITY_DEPTH = "MQ_DP"; //NOTE: this is deprecated in favor of the new RAW_MQandDP below + public static final String RAW_MAPPING_QUALITY_WITH_DEPTH_KEY = "RAW_MQandDP"; public static final String AS_RMS_MAPPING_QUALITY_KEY = "AS_MQ"; public static final String AS_RAW_RMS_MAPPING_QUALITY_KEY = "AS_RAW_MQ"; public static final String AS_CULPRIT_KEY = "AS_culprit"; diff --git a/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFHeaderLines.java b/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFHeaderLines.java index d4150e53750..5547e655067 100644 --- a/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFHeaderLines.java +++ b/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVCFHeaderLines.java @@ -1,7 +1,7 @@ package org.broadinstitute.hellbender.utils.variant; import htsjdk.variant.vcf.*; -import org.broadinstitute.hellbender.exceptions.GATKException; +import org.broadinstitute.hellbender.tools.walkers.annotator.RMSMappingQuality; import org.broadinstitute.hellbender.utils.Utils; import java.util.*; @@ -141,8 +141,9 @@ private static void addFilterLine(final VCFFilterHeaderLine line) { addInfoLine(new VCFInfoHeaderLine(LIKELIHOOD_RANK_SUM_KEY, 1, VCFHeaderLineType.Float, "Z-score from Wilcoxon rank sum test of Alt Vs. Ref haplotype likelihoods")); addInfoLine(new VCFInfoHeaderLine(MAP_QUAL_RANK_SUM_KEY, 1, VCFHeaderLineType.Float, "Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities")); addInfoLine(new VCFInfoHeaderLine(AS_MAP_QUAL_RANK_SUM_KEY, VCFHeaderLineCount.A, VCFHeaderLineType.Float, "allele specific Z-score From Wilcoxon rank sum test of each Alt vs. Ref read mapping qualities")); - addInfoLine(new VCFInfoHeaderLine(RAW_RMS_MAPPING_QUALITY_KEY, 1, VCFHeaderLineType.Float, "Raw data for RMS Mapping Quality")); - addInfoLine(new VCFInfoHeaderLine(MAPPING_QUALITY_DEPTH, 1, VCFHeaderLineType.Integer, "Depth over variant samples for better MQ calculation")); + addInfoLine(new VCFInfoHeaderLine(MAPPING_QUALITY_DEPTH, 1, VCFHeaderLineType.Integer, "Depth over variant samples for better MQ calculation (deprecated -- use " + RAW_MAPPING_QUALITY_WITH_DEPTH_KEY + " instead.")); + addInfoLine(new VCFInfoHeaderLine(RAW_RMS_MAPPING_QUALITY_KEY, 1, VCFHeaderLineType.Integer, "Raw data for RMS Mapping Quality (deprecated -- use " + RAW_MAPPING_QUALITY_WITH_DEPTH_KEY + " instead.")); + addInfoLine(new VCFInfoHeaderLine(RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, 2, VCFHeaderLineType.Integer, "Raw data (sum of squared MQ and total depth) for improved RMS Mapping Quality calculation. Incompatible with deprecated " + RMSMappingQuality.getDeprecatedRawKeyName() + " formulation.")); addInfoLine(new VCFInfoHeaderLine(AS_RAW_RMS_MAPPING_QUALITY_KEY, 1, VCFHeaderLineType.String, "Allele-specfic raw data for RMS Mapping Quality")); addInfoLine(new VCFInfoHeaderLine(AS_RMS_MAPPING_QUALITY_KEY, VCFHeaderLineCount.A, VCFHeaderLineType.Float, "Allele-specific RMS Mapping Quality")); addInfoLine(new VCFInfoHeaderLine(AS_RAW_MAP_QUAL_RANK_SUM_KEY, 1, VCFHeaderLineType.String, "Allele-specfic raw data for Mapping Quality Rank Sum")); diff --git a/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java index fc648ed28c7..61f8f0c5471 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java @@ -1,6 +1,7 @@ package org.broadinstitute.hellbender.tools.genomicsdb; import com.intel.genomicsdb.model.GenomicsDBExportConfiguration; +import com.intel.genomicsdb.model.GenomicsDBVidMapProto; import com.intel.genomicsdb.reader.GenomicsDBFeatureReader; import htsjdk.samtools.SAMSequenceDictionary; import htsjdk.samtools.SAMSequenceRecord; @@ -17,6 +18,7 @@ import org.broadinstitute.hellbender.CommandLineProgramTest; import org.broadinstitute.hellbender.Main; import org.broadinstitute.hellbender.cmdline.StandardArgumentDefinitions; +import org.broadinstitute.hellbender.engine.FeatureDataSource; import org.broadinstitute.hellbender.exceptions.UserException; import org.broadinstitute.hellbender.utils.IntervalUtils; import org.broadinstitute.hellbender.utils.SimpleInterval; @@ -26,6 +28,7 @@ import org.broadinstitute.hellbender.testutils.ArgumentsBuilder; import org.broadinstitute.hellbender.testutils.BaseTest; import org.broadinstitute.hellbender.testutils.VariantContextTestUtils; +import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; import org.broadinstitute.hellbender.utils.variant.GATKVariantContextUtils; import org.testng.Assert; import org.testng.annotations.DataProvider; @@ -41,6 +44,9 @@ import java.util.stream.Collectors; import java.util.stream.Stream; +import static org.broadinstitute.hellbender.engine.FeatureDataSource.getFieldNameToListIndexInProtobufVidMappingObject; +import static org.broadinstitute.hellbender.engine.FeatureDataSource.updateINFOFieldCombineOperation; + @Test(groups = {"variantcalling"}) public final class GenomicsDBImportIntegrationTest extends CommandLineProgramTest { private static final String HG_00096 = largeFileTestDir + "gvcfs/HG00096.g.vcf.gz"; @@ -113,6 +119,11 @@ public final class GenomicsDBImportIntegrationTest extends CommandLineProgramTes private static final String SAMPLE_NAME_KEY = "SN"; private static final String ANOTHER_ATTRIBUTE_KEY = "AA"; + private static final List GVCFS_WITH_NEW_MQ = Arrays.asList(toolsTestDir + "/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf", getTestDataDir() + "/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf"); + private static final String COMBINED_WITH_NEW_MQ = toolsTestDir + "/walkers/GenomicsDBImport/newMQcalc.combined.g.vcf"; + private static final List INTERVAL2 = Arrays.asList(new SimpleInterval("20", 1, 11_000_000)); + private static final List ATTRIBUTES_TO_IGNORE = Arrays.asList("RAW_MQ","RAW_MQandDP"); //CombineGVCFs doesn't support the old RAW_MQ anymore + @Override public String getTestedClassName() { return GenomicsDBImport.class.getSimpleName(); @@ -134,6 +145,11 @@ public void testGenomicsDBImportFileInputs() throws IOException { testGenomicsDBImporter(LOCAL_GVCFS, INTERVAL, COMBINED, b38_reference_20_21, true, 1); } + @Test + public void testGenomicsDBImportFileInputs_newMQ() throws IOException { + testGenomicsDBImporter_newMQ(GVCFS_WITH_NEW_MQ, INTERVAL2, COMBINED_WITH_NEW_MQ, b37_reference_20_21, true, Collections.emptyList()); + } + @Test public void testGenomicsDBImportFileInputsWithMultipleIntervals() throws IOException { testGenomicsDBImporter(LOCAL_GVCFS, MULTIPLE_INTERVALS, COMBINED_MULTI_INTERVAL, b38_reference_20_21, true, 1); @@ -255,7 +271,7 @@ private void testGenomicsDBImporterWithGenotypes(final List vcfInputs, f writeToGenomicsDB(vcfInputs, intervals, workspace, 0, false, 0, 1); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, referenceFile, testAll, produceGTField, sitesOnlyQuery); + checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, referenceFile, testAll, ATTRIBUTES_TO_IGNORE, produceGTField, sitesOnlyQuery); } private File runCombineGVCFs(final List inputs, final List intervals, final String reference, final String[] extraArgs) { @@ -284,7 +300,7 @@ private void testGenomicsDBAgainstCombineGVCFs(final List vcfInputs, fin for(SimpleInterval currInterval : intervals) { List tmpList = new ArrayList(Arrays.asList(currInterval)); File expectedCombinedVCF = runCombineGVCFs(vcfInputs, tmpList, referenceFile, CombineGVCFArgs); - checkGenomicsDBAgainstExpected(workspace, tmpList, expectedCombinedVCF.getAbsolutePath(), referenceFile, true); + checkGenomicsDBAgainstExpected(workspace, tmpList, expectedCombinedVCF.getAbsolutePath(), referenceFile, true, ATTRIBUTES_TO_IGNORE); } } @@ -301,7 +317,7 @@ public void testGenomicsDBAbsolutePathDepndency() throws IOException { writeToGenomicsDB(LOCAL_GVCFS, INTERVAL, workspace.getAbsolutePath() + "/workspace", 0, false, 0, 1); checkJSONFilesAreWritten(workspace.getAbsolutePath() + "/workspace"); Files.move(workspace.toPath(), workspace2.toPath(), StandardCopyOption.REPLACE_EXISTING); - checkGenomicsDBAgainstExpected(workspace2.getAbsolutePath() + "/workspace", INTERVAL, COMBINED, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace2.getAbsolutePath() + "/workspace", INTERVAL, COMBINED, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } @Test (enabled = true) @@ -356,7 +372,7 @@ public void testDifferentThreadValuesFromABucket(final int threads) throws IOExc writeToGenomicsDB(vcfInputs, INTERVAL, workspace, 0, false, 0, threads); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, INTERVAL, COMBINED, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace, INTERVAL, COMBINED, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } @Test(dataProvider = "getThreads") @@ -366,7 +382,7 @@ public void testDifferentThreadValuesLocally(final int threads) throws IOExcepti writeToGenomicsDB(vcfInputs, INTERVAL, workspace, 0, false, 0, threads); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, INTERVAL, COMBINED, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace, INTERVAL, COMBINED, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } /** * @@ -382,10 +398,20 @@ private void testGenomicsDBImporter(final List vcfInputs, final List vcfInputs, final List intervals, + final String expectedCombinedVCF, final String referenceFile, + final boolean testAll, final List attributesToIgnore) throws IOException { + final String workspace = createTempDir("genomicsdb-tests-").getAbsolutePath() + "/workspace"; - writeToGenomicsDB(vcfInputs, intervals, workspace, 0, false, 0, threads); + writeToGenomicsDB(vcfInputs, intervals, workspace, 0, false, 0, 1); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, referenceFile, testAll); + + checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, referenceFile, testAll, attributesToIgnore); } private void testGenomicsDBImporterWithBatchSize(final List vcfInputs, final List intervals, @@ -394,7 +420,7 @@ private void testGenomicsDBImporterWithBatchSize(final List vcfInputs, f writeToGenomicsDB(vcfInputs, intervals, workspace, batchSize, false, 0, 1); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } private void testGenomicsDBImportWithZeroBufferSize(final List vcfInputs, final List intervals, @@ -403,7 +429,7 @@ private void testGenomicsDBImportWithZeroBufferSize(final List vcfInputs writeToGenomicsDB(vcfInputs, intervals, workspace, 0, true, 0, 1); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } @@ -429,10 +455,11 @@ private static void checkJSONFilesAreWritten(final String workspace) { private static void checkGenomicsDBAgainstExpected(final String workspace, final List intervals, final String expectedCombinedVCF, final String referenceFile, - final boolean testAll) throws IOException { + final boolean testAll, final List attributesToIgnore) throws IOException { checkGenomicsDBAgainstExpected(workspace, intervals, expectedCombinedVCF, referenceFile, testAll, + attributesToIgnore, false, false); } @@ -440,6 +467,7 @@ private static void checkGenomicsDBAgainstExpected(final String workspace, final private static void checkGenomicsDBAgainstExpected(final String workspace, final List intervals, final String expectedCombinedVCF, final String referenceFile, final boolean testAll, + final List attributesToIgnore, final boolean produceGTField, final boolean sitesOnlyQuery) throws IOException { final GenomicsDBFeatureReader genomicsDBFeatureReader = @@ -465,7 +493,7 @@ private static void checkGenomicsDBAgainstExpected(final String workspace, final .map(g -> g.getGenotypeString().equals(".")?new GenotypeBuilder(g).alleles(GATKVariantContextUtils.noCallAlleles(2)).make():g) .collect(Collectors.toList()); a = new VariantContextBuilder(a).genotypes(genotypes).make(); - VariantContextTestUtils.assertVariantContextsAreEqualAlleleOrderIndependent(a, e, Collections.emptyList(), VCF_HEADER); + VariantContextTestUtils.assertVariantContextsAreEqualAlleleOrderIndependent(a, e, attributesToIgnore, VCF_HEADER); // Test only that the genotypes match } else { @@ -542,7 +570,7 @@ public void testSampleNameWithSpaces() throws IOException { runCommandLine(args); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, SMALLER_INTERVAL, COMBINED_WITHSPACES, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace, SMALLER_INTERVAL, COMBINED_WITHSPACES, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } @Test(dataProvider = "getOrderingTests") @@ -554,7 +582,7 @@ public void testSampleNameOrdering(final ArgumentsBuilder args) throws IOExcepti runCommandLine(args); checkJSONFilesAreWritten(workspace); - checkGenomicsDBAgainstExpected(workspace, INTERVAL, COMBINED, b38_reference_20_21, true); + checkGenomicsDBAgainstExpected(workspace, INTERVAL, COMBINED, b38_reference_20_21, true, ATTRIBUTES_TO_IGNORE); } private static File createInOrderSampleMap() { @@ -777,7 +805,7 @@ private static GenomicsDBFeatureReader final String workspace, final String reference, final boolean produceGTField, final boolean sitesOnlyQuery) throws IOException { - GenomicsDBExportConfiguration.ExportConfiguration exportConfiguration = GenomicsDBExportConfiguration.ExportConfiguration.newBuilder() + GenomicsDBExportConfiguration.ExportConfiguration.Builder exportConfigurationBuilder = GenomicsDBExportConfiguration.ExportConfiguration.newBuilder() .setWorkspace(workspace) .setReferenceGenome(reference) .setVidMappingFile(new File(workspace, GenomicsDBConstants.DEFAULT_VIDMAP_FILE_NAME).getAbsolutePath()) @@ -785,10 +813,25 @@ private static GenomicsDBFeatureReader .setVcfHeaderFilename(new File(workspace, GenomicsDBConstants.DEFAULT_VCFHEADER_FILE_NAME).getAbsolutePath()) .setProduceGTField(produceGTField) .setSitesOnlyQuery(sitesOnlyQuery) - .setGenerateArrayNameFromPartitionBounds(true) - .build(); + .setGenerateArrayNameFromPartitionBounds(true); + GenomicsDBVidMapProto.VidMappingPB vidMapPB = null; + try { + vidMapPB = FeatureDataSource.getProtobufVidMappingFromJsonFile(new File(workspace, GenomicsDBConstants.DEFAULT_VIDMAP_FILE_NAME)); + } + catch (final IOException e) { + throw new UserException("Could not open vid json file "+GenomicsDBConstants.DEFAULT_VIDMAP_FILE_NAME, e); + } + HashMap fieldNameToIndexInVidFieldsList = + getFieldNameToListIndexInProtobufVidMappingObject(vidMapPB); + + vidMapPB = updateINFOFieldCombineOperation(vidMapPB, fieldNameToIndexInVidFieldsList, + GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "element_wise_sum"); + + if(vidMapPB != null) { + exportConfigurationBuilder.setVidMapping(vidMapPB); + } - return new GenomicsDBFeatureReader<>(exportConfiguration, new BCF2Codec(), Optional.empty()); + return new GenomicsDBFeatureReader<>(exportConfigurationBuilder.build(), new BCF2Codec(), Optional.empty()); } private static GenomicsDBFeatureReader getGenomicsDBFeatureReader( diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/CombineGVCFsIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/CombineGVCFsIntegrationTest.java index e3bfac8ba1d..52ec50ab653 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/CombineGVCFsIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/CombineGVCFsIntegrationTest.java @@ -31,6 +31,10 @@ public class CombineGVCFsIntegrationTest extends CommandLineProgramTest { private static final List NO_EXTRA_ARGS = Collections.emptyList(); + private static final List ATTRIBUTES_TO_IGNORE = Arrays.asList( + "RAW_MQ"); //MQ data format and key have changed since GATK3 + private static final File NA12878_HG37 = new File(toolsTestDir + "haplotypecaller/expected.testGVCFMode.gatk4.g.vcf"); + private static void assertForEachElementInLists(final List actual, final List expected, final BiConsumer assertion) { Assert.assertEquals(actual.size(), expected.size(), "different number of elements in lists:\n" @@ -77,6 +81,7 @@ public Object[][] gvcfsToCombine() { getTestFile("gvcfWithTrailingReferenceBlocksBandedExpected.g.vcf"), Arrays.asList("--" + CombineGVCFs.BREAK_BANDS_LONG_NAME, "2000000"), b38_reference_20_21}, + {new File[]{NA12878_HG37, getTestFile("YRIoffspring.chr20snippet.g.vcf")}, getTestFile("newMQcalc.combined.g.vcf"), NO_EXTRA_ARGS, b37_reference_20_21}, }; } @@ -122,12 +127,12 @@ public void compareToGATK3(File[] inputs, File outputFile, List extraArg System.out.println("Found precomputed gatk3Result"); } - assertVariantContextsMatch(Arrays.asList(inputs), gatk3Result, extraArgs, reference); + assertVariantContextsMatch(Arrays.asList(inputs), gatk3Result, extraArgs, reference, ATTRIBUTES_TO_IGNORE); } @Test(dataProvider = "gvcfsToCombine") public void compareToGATK3ExpectedResults(File[] inputs, File outputFile, List extraArgs, String reference) throws IOException, NoSuchAlgorithmException { - assertVariantContextsMatch(Arrays.asList(inputs), outputFile, extraArgs, reference); + assertVariantContextsMatch(Arrays.asList(inputs), outputFile, extraArgs, reference, ATTRIBUTES_TO_IGNORE); } public static void runProcess(ProcessController processController, String[] command) { @@ -139,15 +144,15 @@ public static void runProcess(ProcessController processController, String[] comm } - - private void assertVariantContextsMatch(List inputs, File expected, List extraArgs, String reference) throws IOException { + public void assertVariantContextsMatch(List inputs, File expected, List extraArgs, String reference, List attributesToIgnore) throws IOException { final VCFHeader header = getHeaderFromFile(expected); runCombineGVCFSandAssertSomething(inputs, expected, extraArgs, (a, e) -> { - VariantContextTestUtils.assertVariantContextsAreEqualAlleleOrderIndependent(a, e, Arrays.asList(), header); + VariantContextTestUtils.assertVariantContextsAreEqualAlleleOrderIndependent(a, e, attributesToIgnore, header); }, reference); } + public void runCombineGVCFSandAssertSomething(List inputs, File expected, List additionalArguments, BiConsumer assertion, String reference) throws IOException { final File output = createTempFile("combinegvcfs", ".vcf"); diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsIntegrationTest.java index 60440ffe4be..5ac020bd672 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsIntegrationTest.java @@ -11,6 +11,7 @@ import org.broadinstitute.hellbender.CommandLineProgramTest; import org.broadinstitute.hellbender.cmdline.StandardArgumentDefinitions; import org.broadinstitute.hellbender.engine.FeatureDataSource; +import org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBConstants; import org.broadinstitute.hellbender.utils.SimpleInterval; import org.broadinstitute.hellbender.utils.Utils; import org.broadinstitute.hellbender.utils.io.IOUtils; @@ -46,10 +47,12 @@ public class GenotypeGVCFsIntegrationTest extends CommandLineProgramTest { private static final File CEUTRIO_20_21_GATK3_4_G_VCF = new File(largeFileTestDir, "gvcfs/CEUTrio.20.21.gatk3.4.g.vcf"); private static final String CEUTRIO_20_21_EXPECTED_VCF = "CEUTrio.20.21.gatk3.7_30_ga4f720357.expected.vcf"; - private static final List ATTRIBUTES_TO_IGNORE = Arrays.asList( + private static final File NA12878_HG37 = new File(toolsTestDir + "haplotypecaller/expected.testGVCFMode.gatk4.g.vcf"); + private static final List ATTRIBUTES_WITH_JITTER = Arrays.asList( "AS_QD", "QD",//TODO QD and AS_QD have cap values and anything that reaches that is randomized. It's difficult to reproduce the same random numbers across gatk3 -> 4 "FS");//TODO There's some bug in either gatk3 or gatk4 fisherstrand that's making them not agree still, I'm not sure which is correct + private static final List ATTRIBUTES_TO_IGNORE = Arrays.asList("AS_QD","QD","FS","RAW_MQ","MQ"); //MQ data format and key have changed since GATK3 private static final String ALLELE_SPECIFIC_DIRECTORY = toolsTestDir + "walkers/annotator/allelespecific"; @@ -73,7 +76,6 @@ public Object[][] gvcfsToGenotype() { {getTestFile("testUpdatePGT.gvcf"), getTestFile( "testUpdatePGT.gatk3.7_30_ga4f720357.output.vcf"), NO_EXTRA_ARGS, b37_reference_20_21}, //testUpdatePGT {getTestFile("gvcfExample1.vcf"), getTestFile( "gvcfExample1.gatk3.7_30_ga4f720357.expected.vcf"), NO_EXTRA_ARGS, b37_reference_20_21}, //single sample vcf {getTestFile("gvcfExample1.vcf"), getTestFile( "gvcfExample1.gatk3.7_30_ga4f720357.expected.vcf"), Arrays.asList("-L", "20"), b37_reference_20_21}, //single sample vcf with -L - {getTestFile("mnp.input.g.vcf"), getTestFile("mnp.expected.vcf"), NO_EXTRA_ARGS, b37_reference_20_21}, // Testing that MNPs can be genotyped correctly {getTestFile("combined_genotype_gvcf_exception.original.vcf"), getTestFile( "combined_genotype_gvcf_exception.gatk3.7_30_ga4f720357.output.vcf"), NO_EXTRA_ARGS, b37_reference_20_21}, //test that an input vcf with 0/0 already in GT field is overwritten {getTestFile("combined_genotype_gvcf_exception.nocall.vcf"), getTestFile( "combined_genotype_gvcf_exception.gatk3.7_30_ga4f720357.output.vcf"), NO_EXTRA_ARGS, b37_reference_20_21}, //same test as above but with ./. {getTestFile(BASE_PAIR_GVCF), getTestFile("ndaTest.gatk3.7_30_ga4f720357.expected.vcf"), Collections.singletonList("--annotate-with-num-discovered-alleles"), b37_reference_20_21}, //annotating with the number of alleles discovered option @@ -105,6 +107,20 @@ public Object[][] gvcfWithPPs() { }; } + @DataProvider(name = "singleSampleGVCFWithNewMQFormat") + public Object[][] singleSampleGVCFWithNewMQFormat() { + return new Object[][]{ + {NA12878_HG37, getTestFile("newMQcalc.singleSample.genotyped.vcf"), new SimpleInterval("20", 1, 11_000_000), b37_reference_20_21} + }; + } + + @DataProvider(name = "GVCFsWithNewMQFormat") + public Object[][] GVCFsWithNewMQFormat() { + return new Object[][]{ + {NA12878_HG37, getTestFile("newMQcalc.singleSample.genotyped.vcf"), new SimpleInterval("20", 1, 11_000_000), b37_reference_20_21}, + {new File(getTestDataDir() + "/walkers/CombineGVCFs/newMQcalc.combined.g.vcf"), getTestFile("newMQcalc.combined.genotyped.vcf"), new SimpleInterval("20", 1, 11_000_000), b37_reference_20_21} + }; + } /* This test is useful for testing changes in GATK4 versus different versions of GATK3. @@ -170,7 +186,7 @@ public Object[][] getGVCFsForGenomicsDB(){ }; } - + //this only tests single-sample @Test(dataProvider = "getGVCFsForGenomicsDB") public void assertMatchingGenotypesFromTileDB(File input, File expected, Locatable interval, String reference) throws IOException { final File tempGenomicsDB = GenomicsDBTestUtils.createTempGenomicsDB(input, interval); @@ -178,6 +194,16 @@ public void assertMatchingGenotypesFromTileDB(File input, File expected, Locatab runGenotypeGVCFSAndAssertSomething(genomicsDBUri, expected, NO_EXTRA_ARGS, VariantContextTestUtils::assertVariantContextsHaveSameGenotypes, reference); } + //this tests single-sample with new MQ format + @Test (dataProvider = "singleSampleGVCFWithNewMQFormat") + public void assertMatchingAnnotationsFromGenomicsDB_newMQformat(File input, File expected, Locatable interval, String reference) throws IOException { + final File tempGenomicsDB = GenomicsDBTestUtils.createTempGenomicsDB(input, interval); + final String genomicsDBUri = GenomicsDBTestUtils.makeGenomicsDBUri(tempGenomicsDB); + + final VCFHeader header = VCFHeaderReader.readHeaderFrom(new SeekablePathStream(IOUtils.getPath(expected.getAbsolutePath()))); + runGenotypeGVCFSAndAssertSomething(genomicsDBUri, expected, NO_EXTRA_ARGS, (a, e) -> VariantContextTestUtils.assertVariantContextsAreEqualAlleleOrderIndependent(a, e, ATTRIBUTES_WITH_JITTER, header), reference); + } + @Test(dataProvider = "gvcfsToGenotype") public void testEntireVariantContext(File input, File expected, List extraArgs, String reference) throws IOException { assertVariantContextsMatch(input, expected, extraArgs, reference); @@ -202,6 +228,12 @@ public void assertPPsAreStripped(File input, File expected, List extraAr runGenotypeGVCFSAndAssertSomething(input, expected, extraArgs, VariantContextTestUtils::assertGenotypePosteriorsAttributeWasRemoved, reference); } + //this test is separate because all the others use old data and ignore the MQ annotations + @Test(dataProvider = "GVCFsWithNewMQFormat") + public void assertNewMQWorks(File input, File expected, Locatable interval, String reference) throws IOException { + final VCFHeader header = VCFHeaderReader.readHeaderFrom(new SeekablePathStream(IOUtils.getPath(expected.getAbsolutePath()))); + runGenotypeGVCFSAndAssertSomething(input, expected, NO_EXTRA_ARGS, (a, e) -> VariantContextTestUtils.assertVariantContextsAreEqualAlleleOrderIndependent(a, e, ATTRIBUTES_WITH_JITTER, header), reference); + } private void runGenotypeGVCFSAndAssertSomething(File input, File expected, List additionalArguments, BiConsumer assertion, String reference) throws IOException { runGenotypeGVCFSAndAssertSomething(input.getAbsolutePath(), expected, additionalArguments, assertion, reference diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQualityUnitTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQualityUnitTest.java index 471a3417df1..ff0f1b159cd 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQualityUnitTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/annotator/RMSMappingQualityUnitTest.java @@ -9,6 +9,7 @@ import org.broadinstitute.hellbender.exceptions.UserException; import org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific.AS_RMSMappingQuality; import org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific.ReducibleAnnotation; +import org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific.ReducibleAnnotationData; import org.broadinstitute.hellbender.utils.MathUtils; import org.broadinstitute.hellbender.utils.QualityUtils; import org.broadinstitute.hellbender.utils.genotyper.AlleleList; @@ -37,25 +38,25 @@ public void testAllNull() throws Exception { @Test public void testDescriptions() throws Exception { - final InfoFieldAnnotation cov = new RMSMappingQuality(); + final RMSMappingQuality cov = new RMSMappingQuality(); Assert.assertEquals(cov.getDescriptions().size(), 1); Assert.assertEquals(cov.getDescriptions().get(0).getID(), VCFConstants.RMS_MAPPING_QUALITY_KEY); - Assert.assertEquals(((RMSMappingQuality)cov).getRawDescriptions().get(0).getID(), GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY); - Assert.assertEquals(new RMSMappingQuality().getRawKeyName(), GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY); - Assert.assertEquals(new RMSMappingQuality().getKeyNames(), Sets.newHashSet(VCFConstants.RMS_MAPPING_QUALITY_KEY, GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)); + Assert.assertEquals(cov.getRawDescriptions().size(), 1); + Assert.assertEquals(cov.getRawDescriptions().get(0).getID(), GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY); + Assert.assertEquals(new RMSMappingQuality().getRawKeyName(), GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY); + Assert.assertEquals(new RMSMappingQuality().getKeyNames(), Sets.newHashSet(VCFConstants.RMS_MAPPING_QUALITY_KEY, GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); } @Test public void testNullLikelihoods() throws Exception { final VariantContext vc= makeVC(); final ReferenceContext referenceContext= null; - final InfoFieldAnnotation cov = new RMSMappingQuality(); + final RMSMappingQuality cov = new RMSMappingQuality(); final Map annotate = cov.annotate(referenceContext, vc, null); Assert.assertTrue(annotate.isEmpty()); Assert.assertEquals(cov.getDescriptions().get(0).getID(), VCFConstants.RMS_MAPPING_QUALITY_KEY); - Assert.assertEquals(((RMSMappingQuality)cov).getRawDescriptions().get(0).getID(), GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY); - Assert.assertEquals(cov.getDescriptions().get(0).getID(), VCFConstants.RMS_MAPPING_QUALITY_KEY); + Assert.assertEquals(cov.getRawDescriptions().get(0).getID(), GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY); } /** @@ -98,7 +99,7 @@ public void testLikelihoods(){ Assert.assertEquals(annotate.size(), 1, "size"); Assert.assertEquals(annotate.keySet(), Collections.singleton(VCFConstants.RMS_MAPPING_QUALITY_KEY), "annots"); final double rms= MathUtils.sumOfSquares(MQsListOK); //only those are MQ0 - Assert.assertNull(annotate.get(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)); + Assert.assertNull(annotate.get(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); Assert.assertEquals(annotate.get(VCFConstants.RMS_MAPPING_QUALITY_KEY), String.format("%.2f", Math.sqrt(rms/(reads.size()-1)))); } @@ -193,25 +194,46 @@ public void testLikelihoodsEmpty_AS() throws Exception { Assert.assertEquals(split[1], String.format("%.2f", 0.0)); } + @Test + public void testCombineAndFinalize() { + final List vcAlleles = Arrays.asList(Allele.create("A", true), Allele.create("T", false)); + final List> combinedVCdata = new ArrayList<>(); + combinedVCdata.add(new ReducibleAnnotationData<>("33640,10")); //10 MQ58 reads + combinedVCdata.add(new ReducibleAnnotationData<>("36000,10")); //10 MQ60 reads + + final RMSMappingQuality annotator = RMSMappingQuality.getInstance(); + + final Map combined = annotator.combineRawData(vcAlleles, combinedVCdata); + final String combinedListString = (String)combined.get(annotator.getRawKeyName()); + Assert.assertEquals(combinedListString, "69640,20"); + + final VariantContext vc = new VariantContextBuilder(makeVC()) + .attribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, combinedListString) + .make(); + final VariantContext originalVC = null; + final Map output = new RMSMappingQuality().finalizeRawData(vc, originalVC); + Assert.assertEquals(Double.parseDouble((String)output.get("MQ")), 59.01); + } + @Test public void testFinalizeRawData(){ final VariantContext vc = new VariantContextBuilder(makeVC()) - .attribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, "2000,100,20") + .attribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "43732,13") .attribute(VCFConstants.DEPTH_KEY, 20) .make(); final VariantContext originalVC = null; final Map output = new RMSMappingQuality().finalizeRawData(vc, originalVC); - Assert.assertEquals(output.get("MQ"), "10.00"); + Assert.assertEquals(output.get("MQ"), "58.00"); } @Test public void testFinalizeRawMQ(){ final VariantContext vc = new VariantContextBuilder(makeVC()) - .attribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, "2000") + .attribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "2000,20") .attribute(VCFConstants.DEPTH_KEY, 20) .make(); final VariantContext output = new RMSMappingQuality().finalizeRawMQ(vc); - Assert.assertFalse(output.hasAttribute( GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)); + Assert.assertFalse(output.hasAttribute( GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); Assert.assertTrue(output.hasAttribute(VCFConstants.RMS_MAPPING_QUALITY_KEY)); Assert.assertEquals(output.getAttributeAsDouble(VCFConstants.RMS_MAPPING_QUALITY_KEY, -1.0), 10.0, 0.01); } @@ -220,31 +242,17 @@ public void testFinalizeRawMQ(){ @Test(expectedExceptions = UserException.BadInput.class) public void testBadRawMQ(){ final VariantContext vc = new VariantContextBuilder(makeVC()) - .attribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, "fiftyeight") + .attribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "fiftyeight") .make(); new RMSMappingQuality().finalizeRawMQ(vc); } - @Test - public void testNoDepth() { - final VariantContext vc = new VariantContextBuilder(makeVC()) - .attribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, "2000") - .make(); - Assert.assertTrue(new RMSMappingQuality().finalizeRawMQ(vc).hasAttribute(VCFConstants.RMS_MAPPING_QUALITY_KEY)); - Assert.assertTrue(Double.isNaN(new RMSMappingQuality().finalizeRawMQ(vc).getAttributeAsDouble(VCFConstants.RMS_MAPPING_QUALITY_KEY, 0))); - } - - @Test - //this test mimics the behavior in gatk3, it's not necessarily the right thing to do - public void testMultipleRawMQOnlyFirstIsSeen(){ + @Test(expectedExceptions = UserException.BadInput.class) + public void testNoDepth(){ final VariantContext vc = new VariantContextBuilder(makeVC()) - .attribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, "2000,1000,") - .attribute(VCFConstants.DEPTH_KEY, 20) + .attribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "20000") .make(); - final VariantContext output = new RMSMappingQuality().finalizeRawMQ(vc); - Assert.assertFalse(output.hasAttribute( GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)); - Assert.assertTrue(output.hasAttribute(VCFConstants.RMS_MAPPING_QUALITY_KEY)); - Assert.assertEquals(output.getAttributeAsDouble(VCFConstants.RMS_MAPPING_QUALITY_KEY, -1.0), 10.0, 0.01); + new RMSMappingQuality().finalizeRawMQ(vc); } @Test @@ -256,7 +264,7 @@ public void testNoRawMQ(){ .make(); final VariantContext output = new RMSMappingQuality().finalizeRawMQ(vc); Assert.assertFalse(output.hasAttribute(VCFConstants.RMS_MAPPING_QUALITY_KEY)); - Assert.assertFalse(output.hasAttribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)); + Assert.assertFalse(output.hasAttribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); Assert.assertEquals(output.getAttribute(OTHER_KEY), VALUE); } diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java index a87fe974159..b2a39049741 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java @@ -35,7 +35,7 @@ public void testJustOneSample() throws Exception { @Test public void testGVCFReblockingIsContiguous() throws Exception { final File output = createTempFile("reblockedgvcf", ".vcf"); - final File expected = new File(largeFileTestDir + "testProductionGVCF.expected.g.vcf.gz"); + final File expected = new File(largeFileTestDir + "testProductionGVCF.expected.g.vcf"); final ArgumentsBuilder args = new ArgumentsBuilder(); args.addReference(new File(b37_reference_20_21)) diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFUnitTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFUnitTest.java index fd1b22370ef..e652e167f02 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFUnitTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFUnitTest.java @@ -41,8 +41,8 @@ public void testCleanUpHighQualityVariant() { Assert.assertTrue(cleaned1.getAttribute(GATKVCFConstants.RAW_QUAL_APPROX_KEY).equals(41)); Assert.assertTrue(cleaned1.hasAttribute(GATKVCFConstants.VARIANT_DEPTH_KEY)); Assert.assertTrue(cleaned1.getAttribute(GATKVCFConstants.VARIANT_DEPTH_KEY).equals(30)); - Assert.assertTrue(cleaned1.hasAttribute(GATKVCFConstants.MAPPING_QUALITY_DEPTH)); - Assert.assertTrue(cleaned1.getAttribute(GATKVCFConstants.MAPPING_QUALITY_DEPTH).equals(32)); + Assert.assertTrue(cleaned1.hasAttribute(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); + Assert.assertTrue(cleaned1.getAttributeAsString(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY,"").split(",")[1].equals("32")); final Genotype hetNonRef = makeG("sample2", DELETION, LONG_SNP, 891,879,1128,84,0,30,891,879,84,891); final VariantContext keepAlts = makeDeletionVC("keepAllAlts", Arrays.asList(LONG_REF, DELETION, LONG_SNP, Allele.NON_REF_ALLELE), LONG_REF.length(), hetNonRef); diff --git a/src/test/resources/large/testProductionGVCF.expected.g.vcf b/src/test/resources/large/testProductionGVCF.expected.g.vcf new file mode 100644 index 00000000000..fa793c12aef --- /dev/null +++ b/src/test/resources/large/testProductionGVCF.expected.g.vcf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f131b56912c5fb62dd1f5d5e5135d6cb3371fe6ea07a8b7d2e90743e070df4d9 +size 1383772 diff --git a/src/test/resources/large/testProductionGVCF.expected.g.vcf.gz b/src/test/resources/large/testProductionGVCF.expected.g.vcf.gz deleted file mode 100644 index 62298071799..00000000000 --- a/src/test/resources/large/testProductionGVCF.expected.g.vcf.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:3434135510e78426cc1c1f5ad552956fc9094d56b7d60bf778778753f8da43a9 -size 272188 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf index 6206edc8981..82278df5e9a 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf @@ -91,29 +91,29 @@ ##INFO= ##INFO= ##INFO= -##INFO= +##INFO= ##INFO= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 20 10000000 . T . . END=10000116 GT:DP:GQ:MIN_DP:PL 0/0:84:99:64:0,120,1800 -20 10000117 . C T, 905.77 . AS_RAW_BaseQRankSum=|2.1,1|NaN;AS_RAW_MQ=127369.00|100800.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=16,20|19,9|0,0;BaseQRankSum=2.136;DP=64;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.913;RAW_MQ=228169.00;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:934,0,1248,1042,1332,2374:16,20,19,9 +20 10000117 . C T, 905.77 . AS_RAW_BaseQRankSum=|2.1,1|NaN;AS_RAW_MQ=127369.00|100800.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=16,20|19,9|0,0;BaseQRankSum=2.136;DP=64;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.913;RAW_MQandDP=228169,64;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:934,0,1248,1042,1332,2374:16,20,19,9 20 10000118 . T . . END=10000210 GT:DP:GQ:MIN_DP:PL 0/0:52:99:44:0,108,1620 -20 10000211 . C T, 941.77 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=91369.00|97200.00|0.00;AS_RAW_MQRankSum=|1.0,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|NaN;AS_SB_TABLE=15,11|11,16|0,0;BaseQRankSum=1.867;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.057;RAW_MQ=188569.00;ReadPosRankSum=0.703 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:970,0,906,1049,988,2036:15,11,11,16 +20 10000211 . C T, 941.77 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=91369.00|97200.00|0.00;AS_RAW_MQRankSum=|1.0,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|NaN;AS_SB_TABLE=15,11|11,16|0,0;BaseQRankSum=1.867;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.057;RAW_MQandDP=188569,53;ReadPosRankSum=0.703 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:970,0,906,1049,988,2036:15,11,11,16 20 10000212 . A . . END=10000438 GT:DP:GQ:MIN_DP:PL 0/0:79:99:55:0,120,1800 -20 10000439 . T G, 2804.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|279076.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|49,31|0,0;DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=279076.00 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 +20 10000439 . T G, 2804.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|279076.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|49,31|0,0;DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=279076,80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 20 10000440 . T . . END=10000585 GT:DP:GQ:MIN_DP:PL 0/0:55:99:41:0,102,1530 20 10000586 . C . . END=10000586 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1503 20 10000587 . G . . END=10000597 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,108,1620 -20 10000598 . T A, 1941.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|149628.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|19,30|0,0;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=149628.00 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 +20 10000598 . T A, 1941.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|149628.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|19,30|0,0;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=149628,49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 20 10000599 . T . . END=10000693 GT:DP:GQ:MIN_DP:PL 0/0:72:99:48:0,120,1800 -20 10000694 . G A, 1008.77 . AS_RAW_BaseQRankSum=|3.5,1|NaN;AS_RAW_MQ=135228.00|58968.00|0.00;AS_RAW_MQRankSum=|-5.2,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=25,20|18,19|0,0;BaseQRankSum=3.599;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.114;RAW_MQ=194196.00;ReadPosRankSum=0.657 GT:AD:DP:GQ:PL:SB 0/1:45,37,0:82:99:1037,0,1601,1173,1712,2885:25,20,18,19 +20 10000694 . G A, 1008.77 . AS_RAW_BaseQRankSum=|3.5,1|NaN;AS_RAW_MQ=135228.00|58968.00|0.00;AS_RAW_MQRankSum=|-5.2,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=25,20|18,19|0,0;BaseQRankSum=3.599;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.114;RAW_MQandDP=194196,82;ReadPosRankSum=0.657 GT:AD:DP:GQ:PL:SB 0/1:45,37,0:82:99:1037,0,1601,1173,1712,2885:25,20,18,19 20 10000695 . G . . END=10000757 GT:DP:GQ:MIN_DP:PL 0/0:89:99:79:0,120,1800 -20 10000758 . T A, 3838.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|270581.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|45,50|0,0;DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=270581.00 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 +20 10000758 . T A, 3838.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|270581.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|45,50|0,0;DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=270581,95 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 20 10000759 . A . . END=10001018 GT:DP:GQ:MIN_DP:PL 0/0:66:99:52:0,120,1800 -20 10001019 . T G, 650.77 . AS_RAW_BaseQRankSum=|-2.6,1|NaN;AS_RAW_MQ=137329.00|21866.00|0.00;AS_RAW_MQRankSum=|-7.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.0,1|NaN;AS_SB_TABLE=17,22|14,12|0,0;BaseQRankSum=-2.541;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-7.498;RAW_MQ=159195.00;ReadPosRankSum=-0.925 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:679,0,1426,796,1504,2300:17,22,14,12 +20 10001019 . T G, 650.77 . AS_RAW_BaseQRankSum=|-2.6,1|NaN;AS_RAW_MQ=137329.00|21866.00|0.00;AS_RAW_MQRankSum=|-7.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.0,1|NaN;AS_SB_TABLE=17,22|14,12|0,0;BaseQRankSum=-2.541;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-7.498;RAW_MQandDP=159195,65;ReadPosRankSum=-0.925 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:679,0,1426,796,1504,2300:17,22,14,12 20 10001020 . C . . END=10001297 GT:DP:GQ:MIN_DP:PL 0/0:68:99:46:0,117,1755 -20 10001298 . T A, 2917.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|217124.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|41,32|0,0;DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=218493.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 +20 10001298 . T A, 2917.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|217124.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|41,32|0,0;DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=218493,74 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 20 10001299 . C . . END=10001426 GT:DP:GQ:MIN_DP:PL 0/0:63:99:49:0,111,1800 20 10001427 . T . . END=10001427 GT:DP:GQ:MIN_DP:PL 0/0:53:5:53:0,5,1899 20 10001428 . T . . END=10001429 GT:DP:GQ:MIN_DP:PL 0/0:54:99:53:0,120,1800 @@ -122,25 +122,25 @@ 20 10001433 . T . . END=10001433 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1779 20 10001434 . G . . END=10001434 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 20 10001435 . A . . END=10001435 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1790 -20 10001436 . A AAGGCT, 2301.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|76986.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,7|0,0;DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=92755.00 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 +20 10001436 . A AAGGCT, 2301.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|76986.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,7|0,0;DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=92755,55 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 20 10001437 . A . . END=10001473 GT:DP:GQ:MIN_DP:PL 0/0:61:99:51:0,120,1800 -20 10001474 . C T, 2640.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|140615.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|48,25|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=140615.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 +20 10001474 . C T, 2640.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|140615.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|48,25|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140615,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 20 10001475 . G . . END=10001616 GT:DP:GQ:MIN_DP:PL 0/0:95:99:72:0,120,1800 -20 10001617 . C A, 1731.77 . AS_RAW_BaseQRankSum=|1.2,1|NaN;AS_RAW_MQ=177220.00|181369.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=23,29|33,18|0,0;BaseQRankSum=1.261;DP=103;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.373;RAW_MQ=358589.00;ReadPosRankSum=-0.280 GT:AD:DP:GQ:PL:SB 0/1:52,51,0:103:99:1760,0,1781,1916,1935,3851:23,29,33,18 +20 10001617 . C A, 1731.77 . AS_RAW_BaseQRankSum=|1.2,1|NaN;AS_RAW_MQ=177220.00|181369.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=23,29|33,18|0,0;BaseQRankSum=1.261;DP=103;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.373;RAW_MQandDP=358589,103;ReadPosRankSum=-0.280 GT:AD:DP:GQ:PL:SB 0/1:52,51,0:103:99:1760,0,1781,1916,1935,3851:23,29,33,18 20 10001618 . T . . END=10001627 GT:DP:GQ:MIN_DP:PL 0/0:100:99:94:0,120,1800 -20 10001628 . G A, 3898.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|332548.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|55,40|0,0;DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=332548.00 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 +20 10001628 . G A, 3898.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|332548.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|55,40|0,0;DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=332548,95 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 20 10001629 . G . . END=10001660 GT:DP:GQ:MIN_DP:PL 0/0:81:99:76:0,120,1800 -20 10001661 . T C, 3606.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|275574.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|49,32|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=275574.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 +20 10001661 . T C, 3606.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|275574.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|49,32|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=275574,81 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 20 10001662 . T . . END=10001669 GT:DP:GQ:MIN_DP:PL 0/0:82:99:81:0,120,1800 -20 10001670 . T G, 3673.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|267297.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|46,35|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=267297.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 +20 10001670 . T G, 3673.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|267297.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|46,35|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=267297,81 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 20 10001671 . G . . END=10002057 GT:DP:GQ:MIN_DP:PL 0/0:76:99:57:0,120,1800 -20 10002058 . T G, 2963.77 . AS_RAW_BaseQRankSum=|1.9,1|NaN;AS_RAW_MQ=841.00|249365.00|0.00;AS_RAW_MQRankSum=|3.0,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=1,0|51,23|0,0;BaseQRankSum=1.931;DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=3.068;RAW_MQ=250206.00;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL:SB 1/1:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 +20 10002058 . T G, 2963.77 . AS_RAW_BaseQRankSum=|1.9,1|NaN;AS_RAW_MQ=841.00|249365.00|0.00;AS_RAW_MQRankSum=|3.0,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=1,0|51,23|0,0;BaseQRankSum=1.931;DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=3.068;RAW_MQandDP=250206,75;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL:SB 1/1:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 20 10002059 . A . . END=10002098 GT:DP:GQ:MIN_DP:PL 0/0:77:99:65:0,120,1800 -20 10002099 . C T, 1194.77 . AS_RAW_BaseQRankSum=|-0.3,1|NaN;AS_RAW_MQ=88923.00|117006.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=19,8|23,15|0,0;BaseQRankSum=-0.282;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.850;RAW_MQ=205929.00;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 +20 10002099 . C T, 1194.77 . AS_RAW_BaseQRankSum=|-0.3,1|NaN;AS_RAW_MQ=88923.00|117006.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=19,8|23,15|0,0;BaseQRankSum=-0.282;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.850;RAW_MQandDP=205929,65;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 20 10002100 . T . . END=10002137 GT:DP:GQ:MIN_DP:PL 0/0:59:99:49:0,120,1800 -20 10002138 . C G, 2443.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|168463.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,26|0,0;DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=168463.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 +20 10002138 . C G, 2443.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|168463.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,26|0,0;DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=168463,53 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 20 10002139 . A . . END=10002141 GT:DP:GQ:MIN_DP:PL 0/0:54:99:52:0,120,1800 -20 10002142 . G C, 2407.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|164863.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|24,28|0,0;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=164863.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 +20 10002142 . G C, 2407.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|164863.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|24,28|0,0;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=164863,52 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 20 10002143 . T . . END=10002201 GT:DP:GQ:MIN_DP:PL 0/0:48:99:42:0,105,1575 20 10002202 . G . . END=10002203 GT:DP:GQ:MIN_DP:PL 0/0:49:96:47:0,96,1440 20 10002204 . G . . END=10002212 GT:DP:GQ:MIN_DP:PL 0/0:46:99:45:0,99,1485 @@ -149,13 +149,13 @@ 20 10002455 . A . . END=10002455 GT:DP:GQ:MIN_DP:PL 0/0:50:93:50:0,93,1395 20 10002456 . T . . END=10002456 GT:DP:GQ:MIN_DP:PL 0/0:52:78:52:0,78,1170 20 10002457 . A . . END=10002457 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1572 -20 10002458 . G GT,GTTT,GTTTTT, 2135.73 . AS_RAW_BaseQRankSum=||||;AS_RAW_MQ=0.00|18441.00|16082.00|3364.00|0.00;AS_RAW_MQRankSum=||||;AS_RAW_ReadPosRankSum=||||;AS_SB_TABLE=0,0|3,3|5,1|4,0|0,0;DP=47;ExcessHet=3.0103;MLEAC=1,1,0,0;MLEAF=0.500,0.500,0.00,0.00;RAW_MQ=127415.00 GT:AD:DP:GQ:PL:SB 1/2:0,6,6,4,0:16:9:2172,654,493,249,0,82,353,33,9,214,876,512,168,254,730:0,0,12,4 +20 10002458 . G GT,GTTT,GTTTTT, 2135.73 . AS_RAW_BaseQRankSum=||||;AS_RAW_MQ=0.00|18441.00|16082.00|3364.00|0.00;AS_RAW_MQRankSum=||||;AS_RAW_ReadPosRankSum=||||;AS_SB_TABLE=0,0|3,3|5,1|4,0|0,0;DP=47;ExcessHet=3.0103;MLEAC=1,1,0,0;MLEAF=0.500,0.500,0.00,0.00;RAW_MQandDP=127415,47 GT:AD:DP:GQ:PL:SB 1/2:0,6,6,4,0:16:9:2172,654,493,249,0,82,353,33,9,214,876,512,168,254,730:0,0,12,4 20 10002459 . T . . END=10002459 GT:DP:GQ:MIN_DP:PL 0/0:58:78:58:0,78,1170 20 10002460 . T . . END=10002460 GT:DP:GQ:MIN_DP:PL 0/0:60:87:60:0,87,1305 20 10002461 . T . . END=10002467 GT:DP:GQ:MIN_DP:PL 0/0:62:90:60:0,90,1350 20 10002468 . T . . END=10002468 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,99,1485 20 10002469 . T . . END=10002469 GT:DP:GQ:MIN_DP:PL 0/0:62:81:62:0,81,1215 -20 10002470 . C T, 2522.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|144226.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,27|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=144226.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 +20 10002470 . C T, 2522.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|144226.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,27|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=144226,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 20 10002471 . T . . END=10002471 GT:DP:GQ:MIN_DP:PL 0/0:63:84:63:0,84,1260 20 10002472 . T . . END=10002474 GT:DP:GQ:MIN_DP:PL 0/0:63:90:63:0,90,1350 20 10002475 . T . . END=10002477 GT:DP:GQ:MIN_DP:PL 0/0:70:99:66:0,102,1530 @@ -184,9 +184,9 @@ 20 10002574 . C . . END=10002575 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1215 20 10002576 . C . . END=10002579 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 20 10002580 . C . . END=10002624 GT:DP:GQ:MIN_DP:PL 0/0:49:99:40:0,102,1530 -20 10002625 . G T, 2665.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|223179.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|26,38|0,0;DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=223179.00 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 +20 10002625 . G T, 2665.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|223179.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|26,38|0,0;DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=223179,64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 20 10002626 . G . . END=10003020 GT:DP:GQ:MIN_DP:PL 0/0:65:99:52:0,120,1800 -20 10003021 . C T, 2383.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|208779.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,25|0,0;DP=60;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=208779.00 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 +20 10003021 . C T, 2383.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|208779.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,25|0,0;DP=60;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=208779,60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 20 10003022 . G . . END=10003110 GT:DP:GQ:MIN_DP:PL 0/0:55:99:39:0,99,1485 20 10003111 . C . . END=10003113 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1395 20 10003114 . C . . END=10003115 GT:DP:GQ:MIN_DP:PL 0/0:40:81:39:0,81,1215 @@ -194,114 +194,114 @@ 20 10003120 . G . . END=10003121 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 20 10003122 . C . . END=10003122 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1427 20 10003123 . A . . END=10003357 GT:DP:GQ:MIN_DP:PL 0/0:88:99:55:0,120,1800 -20 10003358 . A C, 1454.77 . AS_RAW_BaseQRankSum=|0.0,1|NaN;AS_RAW_MQ=159769.00|158400.00|0.00;AS_RAW_MQRankSum=|1.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=31,14|29,15|0,0;BaseQRankSum=0.004;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.011;RAW_MQ=318169.00;ReadPosRankSum=-1.355 GT:AD:DP:GQ:PL:SB 0/1:45,44,0:89:99:1483,0,1477,1618,1609,3227:31,14,29,15 +20 10003358 . A C, 1454.77 . AS_RAW_BaseQRankSum=|0.0,1|NaN;AS_RAW_MQ=159769.00|158400.00|0.00;AS_RAW_MQRankSum=|1.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=31,14|29,15|0,0;BaseQRankSum=0.004;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.011;RAW_MQandDP=318169,89;ReadPosRankSum=-1.355 GT:AD:DP:GQ:PL:SB 0/1:45,44,0:89:99:1483,0,1477,1618,1609,3227:31,14,29,15 20 10003359 . C . . END=10003650 GT:DP:GQ:MIN_DP:PL 0/0:78:99:50:0,120,1800 -20 10003651 . T C, 3620.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|325876.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|32,61|0,0;DP=93;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=325876.00 GT:AD:DP:GQ:PL:SB 1/1:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 +20 10003651 . T C, 3620.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|325876.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|32,61|0,0;DP=93;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=325876,93 GT:AD:DP:GQ:PL:SB 1/1:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 20 10003652 . C . . END=10003691 GT:DP:GQ:MIN_DP:PL 0/0:79:99:70:0,120,1800 -20 10003692 . A G, 2609.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|240338.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,43|0,0;DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=240338.00 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 +20 10003692 . A G, 2609.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|240338.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,43|0,0;DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=240338,68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 20 10003693 . T . . END=10003831 GT:DP:GQ:MIN_DP:PL 0/0:53:99:46:0,111,1665 -20 10003832 . G A, 2705.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|215436.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|23,43|0,0;DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=215436.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 +20 10003832 . G A, 2705.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|215436.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|23,43|0,0;DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=215436,66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 20 10003833 . T . . END=10004093 GT:DP:GQ:MIN_DP:PL 0/0:69:99:43:0,108,1620 -20 10004094 . A C, 1825.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|147492.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,18|0,0;DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=147492.00 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 +20 10004094 . A C, 1825.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|147492.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,18|0,0;DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147492,53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 20 10004095 . C . . END=10004146 GT:DP:GQ:MIN_DP:PL 0/0:51:99:45:0,109,1596 -20 10004147 . A G, 1837.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|157262.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|21,31|0,0;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=157262.00 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 +20 10004147 . A G, 1837.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|157262.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|21,31|0,0;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=157262,52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 20 10004148 . G . . END=10004192 GT:DP:GQ:MIN_DP:PL 0/0:49:99:45:0,106,1637 -20 10004193 . G T, 918.77 . AS_RAW_BaseQRankSum=|-0.6,1|NaN;AS_RAW_MQ=70129.00|112740.00|0.00;AS_RAW_MQRankSum=|3.4,1|NaN;AS_RAW_ReadPosRankSum=|1.5,1|NaN;AS_SB_TABLE=12,11|12,17|0,0;BaseQRankSum=-0.504;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.421;RAW_MQ=182869.00;ReadPosRankSum=1.512 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:947,0,775,1016,860,1876:12,11,12,17 +20 10004193 . G T, 918.77 . AS_RAW_BaseQRankSum=|-0.6,1|NaN;AS_RAW_MQ=70129.00|112740.00|0.00;AS_RAW_MQRankSum=|3.4,1|NaN;AS_RAW_ReadPosRankSum=|1.5,1|NaN;AS_SB_TABLE=12,11|12,17|0,0;BaseQRankSum=-0.504;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.421;RAW_MQandDP=182869,52;ReadPosRankSum=1.512 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:947,0,775,1016,860,1876:12,11,12,17 20 10004194 . C . . END=10004221 GT:DP:GQ:MIN_DP:PL 0/0:50:99:46:0,105,1575 -20 10004222 . C CA, 12.96 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=121951.00|23791.00|0.00;AS_RAW_MQRankSum=|-2.1,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=18,13|4,4|0,0;BaseQRankSum=0.335;DP=54;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.042;RAW_MQ=194729.00;ReadPosRankSum=1.271 GT:AD:DP:GQ:PL:SB 0/1:31,8,0:39:50:50,0,923,153,952,1105:18,13,4,4 -20 10004223 . A AG, 47.73 . AS_RAW_BaseQRankSum=|-0.5,1|NaN;AS_RAW_MQ=108277.00|39441.00|0.00;AS_RAW_MQRankSum=|1.8,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=16,20|5,6|0,0;BaseQRankSum=-0.480;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.886;RAW_MQ=210769.00;ReadPosRankSum=0.339 GT:AD:DP:GQ:PL:SB 0/1:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 +20 10004222 . C CA, 12.96 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=121951.00|23791.00|0.00;AS_RAW_MQRankSum=|-2.1,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=18,13|4,4|0,0;BaseQRankSum=0.335;DP=54;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.042;RAW_MQandDP=194729,54;ReadPosRankSum=1.271 GT:AD:DP:GQ:PL:SB 0/1:31,8,0:39:50:50,0,923,153,952,1105:18,13,4,4 +20 10004223 . A AG, 47.73 . AS_RAW_BaseQRankSum=|-0.5,1|NaN;AS_RAW_MQ=108277.00|39441.00|0.00;AS_RAW_MQRankSum=|1.8,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=16,20|5,6|0,0;BaseQRankSum=-0.480;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.886;RAW_MQandDP=210769,62;ReadPosRankSum=0.339 GT:AD:DP:GQ:PL:SB 0/1:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 20 10004224 . A . . END=10004224 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1403 20 10004225 . A . . END=10004240 GT:DP:GQ:MIN_DP:PL 0/0:70:99:65:0,117,1755 20 10004241 . G . . END=10004241 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1965 20 10004242 . A . . END=10004350 GT:DP:GQ:MIN_DP:PL 0/0:73:99:58:0,120,1800 -20 10004351 . C G, 2755.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|243987.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,32|0,0;DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=243987.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 +20 10004351 . C G, 2755.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|243987.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,32|0,0;DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=243987,70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 20 10004352 . A . . END=10004388 GT:DP:GQ:MIN_DP:PL 0/0:65:99:62:0,120,1800 -20 10004389 . T G, 2494.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|199570.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,37|0,0;DP=62;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=199570.00 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 +20 10004389 . T G, 2494.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|199570.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,37|0,0;DP=62;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=199570,62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 20 10004390 . G . . END=10004609 GT:DP:GQ:MIN_DP:PL 0/0:73:99:58:0,120,1800 -20 10004610 . A C, 3625.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|306605.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|46,43|0,0;DP=89;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=306605.00 GT:AD:DP:GQ:PL:SB 1/1:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 +20 10004610 . A C, 3625.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|306605.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|46,43|0,0;DP=89;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=306605,89 GT:AD:DP:GQ:PL:SB 1/1:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 20 10004611 . C . . END=10004724 GT:DP:GQ:MIN_DP:PL 0/0:75:99:64:0,120,1800 -20 10004725 . A G, 951.77 . AS_RAW_BaseQRankSum=|-2.2,1|NaN;AS_RAW_MQ=92793.00|105769.00|0.00;AS_RAW_MQRankSum=|3.0,1|NaN;AS_RAW_ReadPosRankSum=|2.0,1|NaN;AS_SB_TABLE=10,25|17,13|0,0;BaseQRankSum=-2.154;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.008;RAW_MQ=198562.00;ReadPosRankSum=2.087 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:980,0,1168,1085,1258,2343:10,25,17,13 +20 10004725 . A G, 951.77 . AS_RAW_BaseQRankSum=|-2.2,1|NaN;AS_RAW_MQ=92793.00|105769.00|0.00;AS_RAW_MQRankSum=|3.0,1|NaN;AS_RAW_ReadPosRankSum=|2.0,1|NaN;AS_SB_TABLE=10,25|17,13|0,0;BaseQRankSum=-2.154;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.008;RAW_MQandDP=198562,65;ReadPosRankSum=2.087 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:980,0,1168,1085,1258,2343:10,25,17,13 20 10004726 . T . . END=10004768 GT:DP:GQ:MIN_DP:PL 0/0:66:99:62:0,120,1800 -20 10004769 . TAAAACTATGC T, 981.73 . AS_RAW_BaseQRankSum=|1.6,1|NaN;AS_RAW_MQ=133200.00|32185.00|0.00;AS_RAW_MQRankSum=|-6.7,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=14,23|7,20|0,0;BaseQRankSum=1.603;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.625;RAW_MQ=216626.00;ReadPosRankSum=1.879 GT:AD:DP:GQ:PL:SB 0/1:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 +20 10004769 . TAAAACTATGC T, 981.73 . AS_RAW_BaseQRankSum=|1.6,1|NaN;AS_RAW_MQ=133200.00|32185.00|0.00;AS_RAW_MQRankSum=|-6.7,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=14,23|7,20|0,0;BaseQRankSum=1.603;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.625;RAW_MQandDP=216626,79;ReadPosRankSum=1.879 GT:AD:DP:GQ:PL:SB 0/1:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 20 10004780 . A . . END=10004873 GT:DP:GQ:MIN_DP:PL 0/0:77:99:69:0,120,1800 -20 10004874 . A C, 3602.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|306223.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|54,33|0,0;DP=87;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=306223.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 +20 10004874 . A C, 3602.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|306223.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|54,33|0,0;DP=87;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=306223,87 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 20 10004875 . T . . END=10004886 GT:DP:GQ:MIN_DP:PL 0/0:86:99:85:0,120,1800 -20 10004887 . A G, 1323.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=159241.00|141241.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.2,1|NaN;AS_SB_TABLE=24,21|24,16|0,0;BaseQRankSum=0.356;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.067;RAW_MQ=300482.00;ReadPosRankSum=-1.114 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 +20 10004887 . A G, 1323.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=159241.00|141241.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.2,1|NaN;AS_SB_TABLE=24,21|24,16|0,0;BaseQRankSum=0.356;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.067;RAW_MQandDP=300482,85;ReadPosRankSum=-1.114 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 20 10004888 . A . . END=10005009 GT:DP:GQ:MIN_DP:PL 0/0:81:99:65:0,120,1800 -20 10005010 . C T, 2934.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|256441.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|44,28|0,0;DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=256441.00 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 +20 10005010 . C T, 2934.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|256441.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|44,28|0,0;DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=256441,72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 20 10005011 . G . . END=10005426 GT:DP:GQ:MIN_DP:PL 0/0:72:99:51:0,120,1800 -20 10005427 . C T, 2214.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|195241.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,28|0,0;DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=195241.00 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 +20 10005427 . C T, 2214.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|195241.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,28|0,0;DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=195241,55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 20 10005428 . A . . END=10005498 GT:DP:GQ:MIN_DP:PL 0/0:71:99:57:0,120,1800 -20 10005499 . A G, 3053.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|273600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|45,31|0,0;DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=273600.00 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 +20 10005499 . A G, 3053.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|273600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|45,31|0,0;DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=273600,76 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 20 10005500 . T . . END=10005586 GT:DP:GQ:MIN_DP:PL 0/0:71:99:66:0,120,1800 -20 10005587 . A G, 1229.77 . AS_RAW_BaseQRankSum=|-0.9,1|NaN;AS_RAW_MQ=129600.00|127369.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=19,17|16,20|0,0;BaseQRankSum=-0.834;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.972;RAW_MQ=256969.00;ReadPosRankSum=0.248 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:1258,0,1236,1366,1345,2710:19,17,16,20 +20 10005587 . A G, 1229.77 . AS_RAW_BaseQRankSum=|-0.9,1|NaN;AS_RAW_MQ=129600.00|127369.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=19,17|16,20|0,0;BaseQRankSum=-0.834;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.972;RAW_MQandDP=256969,72;ReadPosRankSum=0.248 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:1258,0,1236,1366,1345,2710:19,17,16,20 20 10005588 . A . . END=10005722 GT:DP:GQ:MIN_DP:PL 0/0:83:99:73:0,120,1800 -20 10005723 . A G, 3062.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|307369.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|48,38|0,0;DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=307369.00 GT:AD:DP:GQ:PL:SB 1/1:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 +20 10005723 . A G, 3062.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|307369.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|48,38|0,0;DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=307369,86 GT:AD:DP:GQ:PL:SB 1/1:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 20 10005724 . A . . END=10006290 GT:DP:GQ:MIN_DP:PL 0/0:82:99:53:0,120,1800 -20 10006291 . G A, 978.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=188569.00|106610.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|NaN;AS_SB_TABLE=25,28|16,15|0,0;BaseQRankSum=0.311;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.081;RAW_MQ=295179.00;ReadPosRankSum=-1.447 GT:AD:DP:GQ:PL:SB 0/1:53,31,0:84:99:1007,0,1905,1167,1998,3165:25,28,16,15 +20 10006291 . G A, 978.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=188569.00|106610.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|NaN;AS_SB_TABLE=25,28|16,15|0,0;BaseQRankSum=0.311;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.081;RAW_MQandDP=295179,84;ReadPosRankSum=-1.447 GT:AD:DP:GQ:PL:SB 0/1:53,31,0:84:99:1007,0,1905,1167,1998,3165:25,28,16,15 20 10006292 . A . . END=10006403 GT:DP:GQ:MIN_DP:PL 0/0:81:99:76:0,120,1800 -20 10006404 . A C, 2928.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|268082.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,49|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=269451.00 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 +20 10006404 . A C, 2928.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|268082.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,49|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=269451,77 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 20 10006405 . C . . END=10006681 GT:DP:GQ:MIN_DP:PL 0/0:78:99:65:0,120,1800 -20 10006682 . T A, 2874.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|257810.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|44,29|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=257810.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 +20 10006682 . T A, 2874.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|257810.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|44,29|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=257810,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 20 10006683 . A . . END=10006818 GT:DP:GQ:MIN_DP:PL 0/0:65:99:61:0,120,1800 -20 10006819 . AAAAC A, 2531.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|219200.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,28|0,0;DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=284000.00 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 +20 10006819 . AAAAC A, 2531.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|219200.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,28|0,0;DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=284000,76 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 20 10006824 . A . . END=10007149 GT:DP:GQ:MIN_DP:PL 0/0:77:99:59:0,120,1800 -20 10007150 . G C, 669.77 . AS_RAW_BaseQRankSum=|-4.5,1|NaN;AS_RAW_MQ=136800.00|90000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=16,22|14,11|0,0;BaseQRankSum=-4.476;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=226800.00;ReadPosRankSum=-0.077 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 +20 10007150 . G C, 669.77 . AS_RAW_BaseQRankSum=|-4.5,1|NaN;AS_RAW_MQ=136800.00|90000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=16,22|14,11|0,0;BaseQRankSum=-4.476;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=226800,63;ReadPosRankSum=-0.077 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 20 10007151 . G . . END=10007174 GT:DP:GQ:MIN_DP:PL 0/0:57:99:56:0,120,1800 -20 10007175 . C T, 1350.77 . AS_RAW_BaseQRankSum=|2.2,1|NaN;AS_RAW_MQ=80041.00|136800.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=9,14|18,20|0,0;BaseQRankSum=2.249;DP=61;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.319;RAW_MQ=216841.00;ReadPosRankSum=-1.213 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,38,0:61:99:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 +20 10007175 . C T, 1350.77 . AS_RAW_BaseQRankSum=|2.2,1|NaN;AS_RAW_MQ=80041.00|136800.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=9,14|18,20|0,0;BaseQRankSum=2.249;DP=61;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.319;RAW_MQandDP=216841,61;ReadPosRankSum=-1.213 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,38,0:61:99:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 20 10007176 . T . . END=10007351 GT:DP:GQ:MIN_DP:PL 0/0:56:99:47:0,119,1671 -20 10007352 . C T, 2764.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|245641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|29,40|0,0;DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=245641.00 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 +20 10007352 . C T, 2764.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|245641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|29,40|0,0;DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=245641,69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 20 10007353 . A . . END=10007530 GT:DP:GQ:MIN_DP:PL 0/0:75:99:58:0,120,1800 -20 10007531 . A G, 2920.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|256969.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|48,24|0,0;DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=256969.00 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 +20 10007531 . A G, 2920.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|256969.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|48,24|0,0;DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=256969,72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 20 10007532 . G . . END=10007979 GT:DP:GQ:MIN_DP:PL 0/0:80:99:65:0,120,1800 -20 10007980 . A C, 3524.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|331800.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|39,51|0,0;DP=90;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=331800.00 GT:AD:DP:GQ:PL:SB 1/1:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 +20 10007980 . A C, 3524.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|331800.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|39,51|0,0;DP=90;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=331800,90 GT:AD:DP:GQ:PL:SB 1/1:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 20 10007981 . A . . END=10008028 GT:DP:GQ:MIN_DP:PL 0/0:86:99:80:0,120,1800 -20 10008029 . T TA, 1986.73 . AS_RAW_BaseQRankSum=|0.4,1|NaN;AS_RAW_MQ=10800.00|268510.00|0.00;AS_RAW_MQRankSum=|0.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=1,2|27,45|0,0;BaseQRankSum=0.409;DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.576;RAW_MQ=327251.00;ReadPosRankSum=-1.326 GT:AD:DP:GQ:PL:SB 1/1:3,72,0:75:99:2024,145,0,2033,222,2110:1,2,27,45 +20 10008029 . T TA, 1986.73 . AS_RAW_BaseQRankSum=|0.4,1|NaN;AS_RAW_MQ=10800.00|268510.00|0.00;AS_RAW_MQRankSum=|0.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=1,2|27,45|0,0;BaseQRankSum=0.409;DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.576;RAW_MQandDP=327251,88;ReadPosRankSum=-1.326 GT:AD:DP:GQ:PL:SB 1/1:3,72,0:75:99:2024,145,0,2033,222,2110:1,2,27,45 20 10008030 . A . . END=10008145 GT:DP:GQ:MIN_DP:PL 0/0:82:99:76:0,120,1800 -20 10008146 . TA T, 2141.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|257200.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,32|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=268000.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 +20 10008146 . TA T, 2141.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|257200.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,32|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=268000,73 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 20 10008148 . A . . END=10008220 GT:DP:GQ:MIN_DP:PL 0/0:80:99:72:0,120,1800 -20 10008221 . T C, 3224.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|289669.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,37|0,0;DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=289669.00 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 +20 10008221 . T C, 3224.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|289669.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,37|0,0;DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=289669,80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 20 10008222 . T . . END=10008457 GT:DP:GQ:MIN_DP:PL 0/0:64:99:45:0,108,1620 -20 10008458 . T G, 2654.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|191842.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,39|0,0;DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=191842.00 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 +20 10008458 . T G, 2654.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|191842.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,39|0,0;DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=191842,69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 20 10008459 . A . . END=10008732 GT:DP:GQ:MIN_DP:PL 0/0:70:99:40:0,105,1575 20 10008733 . T . . END=10008733 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1689 20 10008734 . G . . END=10008741 GT:DP:GQ:MIN_DP:PL 0/0:48:99:47:0,120,1800 -20 10008742 . G T, 715.77 . AS_RAW_BaseQRankSum=|3.8,1|NaN;AS_RAW_MQ=37586.00|30288.00|0.00;AS_RAW_MQRankSum=|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=10,13|11,15|0,0;BaseQRankSum=3.893;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.502;RAW_MQ=67874.00;ReadPosRankSum=0.190 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 +20 10008742 . G T, 715.77 . AS_RAW_BaseQRankSum=|3.8,1|NaN;AS_RAW_MQ=37586.00|30288.00|0.00;AS_RAW_MQRankSum=|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=10,13|11,15|0,0;BaseQRankSum=3.893;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.502;RAW_MQandDP=67874,49;ReadPosRankSum=0.190 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 20 10008743 . T . . END=10008757 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,99,1485 -20 10008758 . C CA, 684.14 . AS_RAW_BaseQRankSum=|0.1,1|NaN;AS_RAW_MQ=6578.00|37631.00|0.00;AS_RAW_MQRankSum=|-1.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=3,1|16,15|0,0;BaseQRankSum=0.130;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=-1.168;RAW_MQ=54656.00;ReadPosRankSum=-0.052 GT:AD:DP:GQ:PL:SB 1/1:4,31,0:35:10:721,10,0,733,102,825:3,1,16,15 +20 10008758 . C CA, 684.14 . AS_RAW_BaseQRankSum=|0.1,1|NaN;AS_RAW_MQ=6578.00|37631.00|0.00;AS_RAW_MQRankSum=|-1.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=3,1|16,15|0,0;BaseQRankSum=0.130;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=-1.168;RAW_MQandDP=54656,44;ReadPosRankSum=-0.052 GT:AD:DP:GQ:PL:SB 1/1:4,31,0:35:10:721,10,0,733,102,825:3,1,16,15 20 10008759 . A . . END=10008772 GT:DP:GQ:MIN_DP:PL 0/0:55:99:53:0,120,1800 20 10008773 . T . . END=10008773 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1660 20 10008774 . T . . END=10008774 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,117,1755 20 10008775 . A . . END=10008775 GT:DP:GQ:MIN_DP:PL 0/0:55:60:55:0,60,1923 20 10008776 . G . . END=10008920 GT:DP:GQ:MIN_DP:PL 0/0:54:99:45:0,99,1480 -20 10008921 . C CA, 253.73 . AS_RAW_BaseQRankSum=|0.6,1|NaN;AS_RAW_MQ=62041.00|43805.00|0.00;AS_RAW_MQRankSum=|-2.0,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=10,8|8,8|0,0;BaseQRankSum=0.610;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.906;RAW_MQ=155512.00;ReadPosRankSum=0.173 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,16,0:34:99:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 +20 10008921 . C CA, 253.73 . AS_RAW_BaseQRankSum=|0.6,1|NaN;AS_RAW_MQ=62041.00|43805.00|0.00;AS_RAW_MQRankSum=|-2.0,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=10,8|8,8|0,0;BaseQRankSum=0.610;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.906;RAW_MQandDP=155512,49;ReadPosRankSum=0.173 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,16,0:34:99:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 20 10008922 . A . . END=10008942 GT:DP:GQ:MIN_DP:PL 0/0:53:99:47:0,114,1710 20 10008943 . A . . END=10008944 GT:DP:GQ:MIN_DP:PL 0/0:47:78:47:0,78,1170 20 10008945 . A . . END=10008947 GT:DP:GQ:MIN_DP:PL 0/0:47:81:46:0,81,1215 -20 10008948 . TA T, 2057.73 . AS_RAW_BaseQRankSum=|0.9,1|NaN;AS_RAW_MQ=625.00|134397.00|0.00;AS_RAW_MQRankSum=|2.0,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=1,0|35,15|0,0;BaseQRankSum=0.994;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=2.047;RAW_MQ=138622.00;ReadPosRankSum=0.884 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 +20 10008948 . TA T, 2057.73 . AS_RAW_BaseQRankSum=|0.9,1|NaN;AS_RAW_MQ=625.00|134397.00|0.00;AS_RAW_MQRankSum=|2.0,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=1,0|35,15|0,0;BaseQRankSum=0.994;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=2.047;RAW_MQandDP=138622,52;ReadPosRankSum=0.884 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 20 10008950 . A . . END=10008950 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1485 20 10008951 . A . . END=10008951 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1395 -20 10008952 . CACACACACACACA C,CCA,CCACACACACA,CCACACACACACA, 1666.73 . AS_RAW_BaseQRankSum=|0.3,1|0.3,1|0.6,1|1.9,1|NaN;AS_RAW_MQ=625.00|2523.00|11774.00|12125.00|39600.00|0.00;AS_RAW_MQRankSum=|1.1,1|4.0,1|0.6,1|3.6,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|1.0,1|-0.3,1|0.8,1|NaN;AS_SB_TABLE=1,0|2,1|8,6|4,1|11,0|0,0;BaseQRankSum=0.941;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,1,0;MLEAF=0.00,0.500,0.00,0.500,0.00;MQRankSum=1.844;RAW_MQ=154068.00;ReadPosRankSum=0.716 GT:AD:DP:GQ:PL:SB 2/4:1,3,14,5,11,0:34:99:1704,876,1258,525,811,845,726,514,173,703,582,342,0,443,530,1135,1092,744,779,607,1321:1,0,25,8 +20 10008952 . CACACACACACACA C,CCA,CCACACACACA,CCACACACACACA, 1666.73 . AS_RAW_BaseQRankSum=|0.3,1|0.3,1|0.6,1|1.9,1|NaN;AS_RAW_MQ=625.00|2523.00|11774.00|12125.00|39600.00|0.00;AS_RAW_MQRankSum=|1.1,1|4.0,1|0.6,1|3.6,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|1.0,1|-0.3,1|0.8,1|NaN;AS_SB_TABLE=1,0|2,1|8,6|4,1|11,0|0,0;BaseQRankSum=0.941;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,1,0;MLEAF=0.00,0.500,0.00,0.500,0.00;MQRankSum=1.844;RAW_MQandDP=154068,59;ReadPosRankSum=0.716 GT:AD:DP:GQ:PL:SB 2/4:1,3,14,5,11,0:34:99:1704,876,1258,525,811,845,726,514,173,703,582,342,0,443,530,1135,1092,744,779,607,1321:1,0,25,8 20 10008966 . C . . END=10008986 GT:DP:GQ:MIN_DP:PL 0/0:58:99:56:0,120,1800 20 10008987 . A . . END=10008989 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,2181 20 10008990 . C . . END=10009226 GT:DP:GQ:MIN_DP:PL 0/0:61:99:38:0,102,1530 -20 10009227 . A G, 1369.77 . AS_RAW_BaseQRankSum=|-2.3,1|NaN;AS_RAW_MQ=70061.00|132527.00|0.00;AS_RAW_MQRankSum=|1.4,1|NaN;AS_RAW_ReadPosRankSum=|-1.2,1|NaN;AS_SB_TABLE=16,7|19,20|0,0;BaseQRankSum=-2.220;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.428;RAW_MQ=202588.00;ReadPosRankSum=-1.159 GT:AD:DP:GQ:PL:SB 0/1:23,39,0:62:99:1398,0,740,1468,857,2325:16,7,19,20 +20 10009227 . A G, 1369.77 . AS_RAW_BaseQRankSum=|-2.3,1|NaN;AS_RAW_MQ=70061.00|132527.00|0.00;AS_RAW_MQRankSum=|1.4,1|NaN;AS_RAW_ReadPosRankSum=|-1.2,1|NaN;AS_SB_TABLE=16,7|19,20|0,0;BaseQRankSum=-2.220;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.428;RAW_MQandDP=202588,62;ReadPosRankSum=-1.159 GT:AD:DP:GQ:PL:SB 0/1:23,39,0:62:99:1398,0,740,1468,857,2325:16,7,19,20 20 10009228 . G . . END=10009245 GT:DP:GQ:MIN_DP:PL 0/0:62:99:59:0,120,1800 -20 10009246 . A G, 3002.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|242208.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|42,35|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=242208.00 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3031,231,0,3031,231,3031:0,0,42,35 +20 10009246 . A G, 3002.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|242208.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|42,35|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=242208,77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3031,231,0,3031,231,3031:0,0,42,35 20 10009247 . A . . END=10009399 GT:DP:GQ:MIN_DP:PL 0/0:86:99:68:0,120,1800 -20 10009400 . T A, 2998.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|266400.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|39,35|0,0;DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=266400.00 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 +20 10009400 . T A, 2998.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|266400.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|39,35|0,0;DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=266400,74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 20 10009401 . A . . END=10009511 GT:DP:GQ:MIN_DP:PL 0/0:78:99:72:0,120,1800 -20 10009512 . C G, 3039.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|263240.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,47|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=263240.00 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 +20 10009512 . C G, 3039.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|263240.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,47|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=263240,77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 20 10009513 . A . . END=10009718 GT:DP:GQ:MIN_DP:PL 0/0:81:99:63:0,120,1800 -20 10009719 . A G, 1895.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|207410.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|26,33|0,0;DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=207410.00 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 +20 10009719 . A G, 1895.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|207410.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|26,33|0,0;DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=207410,59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 20 10009720 . T . . END=10009794 GT:DP:GQ:MIN_DP:PL 0/0:54:99:47:0,120,1800 -20 10009795 . A G, 1880.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|166969.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|16,31|0,0;DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=166969.00 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 +20 10009795 . A G, 1880.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|166969.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|16,31|0,0;DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=166969,47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 20 10009796 . C . . END=10009832 GT:DP:GQ:MIN_DP:PL 0/0:49:99:44:0,99,1485 20 10009833 . A . . END=10009840 GT:DP:GQ:MIN_DP:PL 0/0:53:66:51:0,66,990 20 10009841 . A . . END=10009841 GT:DP:GQ:MIN_DP:PL 0/0:51:39:51:0,39,585 -20 10009842 . G GAA, 532.73 . AS_RAW_BaseQRankSum=|0.8,1|NaN;AS_RAW_MQ=51846.00|37046.00|0.00;AS_RAW_MQRankSum=|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|1.7,1|NaN;AS_SB_TABLE=9,10|8,7|0,0;BaseQRankSum=0.872;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.603;RAW_MQ=150092.00;ReadPosRankSum=1.720 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:570,0,690,629,738,1367:9,10,8,7 +20 10009842 . G GAA, 532.73 . AS_RAW_BaseQRankSum=|0.8,1|NaN;AS_RAW_MQ=51846.00|37046.00|0.00;AS_RAW_MQRankSum=|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|1.7,1|NaN;AS_SB_TABLE=9,10|8,7|0,0;BaseQRankSum=0.872;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.603;RAW_MQandDP=150092,51;ReadPosRankSum=1.720 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:570,0,690,629,738,1367:9,10,8,7 20 10009843 . A . . END=10009843 GT:DP:GQ:MIN_DP:PL 0/0:51:36:51:0,36,540 -20 10009844 . G A, 661.77 . AS_RAW_BaseQRankSum=|1.0,1|NaN;AS_RAW_MQ=37722.00|51846.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|-1.6,1|NaN;AS_SB_TABLE=8,8|9,10|0,0;BaseQRankSum=1.048;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.975;RAW_MQ=147168.00;ReadPosRankSum=-1.555 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 +20 10009844 . G A, 661.77 . AS_RAW_BaseQRankSum=|1.0,1|NaN;AS_RAW_MQ=37722.00|51846.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|-1.6,1|NaN;AS_SB_TABLE=8,8|9,10|0,0;BaseQRankSum=1.048;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.975;RAW_MQandDP=147168,51;ReadPosRankSum=-1.555 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 20 10009845 . A . . END=10009847 GT:DP:GQ:MIN_DP:PL 0/0:51:42:51:0,42,630 20 10009848 . G . . END=10009848 GT:DP:GQ:MIN_DP:PL 0/0:54:51:54:0,51,765 20 10009849 . A . . END=10009850 GT:DP:GQ:MIN_DP:PL 0/0:55:57:54:0,57,855 @@ -310,13 +310,13 @@ 20 10009861 . A . . END=10009864 GT:DP:GQ:MIN_DP:PL 0/0:58:84:56:0,84,1260 20 10009865 . A . . END=10009869 GT:DP:GQ:MIN_DP:PL 0/0:57:90:56:0,90,1350 20 10009870 . G . . END=10009870 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,99,1485 -20 10009871 . A G, 658.77 . AS_RAW_BaseQRankSum=|-0.9,1|NaN;AS_RAW_MQ=35804.00|51846.00|0.00;AS_RAW_MQRankSum=|1.4,1|NaN;AS_RAW_ReadPosRankSum=|1.5,1|NaN;AS_SB_TABLE=10,7|9,10|0,0;BaseQRankSum=-0.803;DP=60;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.495;RAW_MQ=154737.00;ReadPosRankSum=1.539 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 +20 10009871 . A G, 658.77 . AS_RAW_BaseQRankSum=|-0.9,1|NaN;AS_RAW_MQ=35804.00|51846.00|0.00;AS_RAW_MQRankSum=|1.4,1|NaN;AS_RAW_ReadPosRankSum=|1.5,1|NaN;AS_SB_TABLE=10,7|9,10|0,0;BaseQRankSum=-0.803;DP=60;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.495;RAW_MQandDP=154737,60;ReadPosRankSum=1.539 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 20 10009872 . G . . END=10009874 GT:DP:GQ:MIN_DP:PL 0/0:57:99:55:0,108,1620 -20 10009875 . A G,AGGGAGG, 2369.73 . AS_RAW_BaseQRankSum=|1.3,1|-0.7,1|NaN;AS_RAW_MQ=1682.00|40205.00|26922.00|0.00;AS_RAW_MQRankSum=|1.8,1|0.8,1|NaN;AS_RAW_ReadPosRankSum=|1.4,1|0.5,1|NaN;AS_SB_TABLE=2,0|6,9|6,7|0,0;BaseQRankSum=0.378;DP=57;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;MQRankSum=1.361;RAW_MQ=143937.00;ReadPosRankSum=1.040 GT:AD:DP:GQ:PL:SB 1/2:2,15,13,0:30:99:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 +20 10009875 . A G,AGGGAGG, 2369.73 . AS_RAW_BaseQRankSum=|1.3,1|-0.7,1|NaN;AS_RAW_MQ=1682.00|40205.00|26922.00|0.00;AS_RAW_MQRankSum=|1.8,1|0.8,1|NaN;AS_RAW_ReadPosRankSum=|1.4,1|0.5,1|NaN;AS_SB_TABLE=2,0|6,9|6,7|0,0;BaseQRankSum=0.378;DP=57;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;MQRankSum=1.361;RAW_MQandDP=143937,57;ReadPosRankSum=1.040 GT:AD:DP:GQ:PL:SB 1/2:2,15,13,0:30:99:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 20 10009876 . G . . END=10009878 GT:DP:GQ:MIN_DP:PL 0/0:52:99:51:0,114,1710 -20 10009879 . A G, 2244.77 . AS_RAW_BaseQRankSum=|1.5,1|NaN;AS_RAW_MQ=1682.00|118979.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|1.1,1|NaN;AS_SB_TABLE=2,0|15,32|0,0;BaseQRankSum=1.534;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=1.570;RAW_MQ=120661.00;ReadPosRankSum=1.113 GT:AD:DP:GQ:PL:SB 1/1:2,47,0:49:99:2273,150,0,2276,154,2279:2,0,15,32 +20 10009879 . A G, 2244.77 . AS_RAW_BaseQRankSum=|1.5,1|NaN;AS_RAW_MQ=1682.00|118979.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|1.1,1|NaN;AS_SB_TABLE=2,0|15,32|0,0;BaseQRankSum=1.534;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=1.570;RAW_MQandDP=120661,49;ReadPosRankSum=1.113 GT:AD:DP:GQ:PL:SB 1/1:2,47,0:49:99:2273,150,0,2276,154,2279:2,0,15,32 20 10009880 . G . . END=10009882 GT:DP:GQ:MIN_DP:PL 0/0:49:99:48:0,120,1800 -20 10009883 . A G, 2151.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|127656.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|15,32|0,0;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=129338.00 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2180,147,0,2180,147,2181:0,0,15,32 +20 10009883 . A G, 2151.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|127656.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|15,32|0,0;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129338,49 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2180,147,0,2180,147,2181:0,0,15,32 20 10009884 . G . . END=10009884 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 20 10009885 . A . . END=10009885 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1815 20 10009886 . A . . END=10009886 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1567 @@ -327,25 +327,25 @@ 20 10009893 . A . . END=10009893 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,2005 20 10009894 . G . . END=10009894 GT:DP:GQ:MIN_DP:PL 0/0:53:48:53:0,48,1842 20 10009895 . G . . END=10010392 GT:DP:GQ:MIN_DP:PL 0/0:70:99:45:0,111,1665 -20 10010393 . T G, 1464.77 . AS_RAW_BaseQRankSum=|-3.4,1|NaN;AS_RAW_MQ=129600.00|149282.00|0.00;AS_RAW_MQRankSum=|-1.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.8,1|NaN;AS_SB_TABLE=24,12|19,24|0,0;BaseQRankSum=-3.351;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.284;RAW_MQ=278882.00;ReadPosRankSum=-1.738 GT:AD:DP:GQ:PL:SB 0/1:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 +20 10010393 . T G, 1464.77 . AS_RAW_BaseQRankSum=|-3.4,1|NaN;AS_RAW_MQ=129600.00|149282.00|0.00;AS_RAW_MQRankSum=|-1.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.8,1|NaN;AS_SB_TABLE=24,12|19,24|0,0;BaseQRankSum=-3.351;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.284;RAW_MQandDP=278882,79;ReadPosRankSum=-1.738 GT:AD:DP:GQ:PL:SB 0/1:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 20 10010394 . T . . END=10010535 GT:DP:GQ:MIN_DP:PL 0/0:83:99:67:0,120,1800 -20 10010536 . G GA, 2462.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|301300.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,43|0,0;DP=85;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=322900.00 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 +20 10010536 . G GA, 2462.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|301300.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,43|0,0;DP=85;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=322900,85 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 20 10010537 . A . . END=10010765 GT:DP:GQ:MIN_DP:PL 0/0:79:99:68:0,120,1800 -20 10010766 . T G, 2411.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|237600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,31|0,0;DP=67;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=241200.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 +20 10010766 . T G, 2411.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|237600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,31|0,0;DP=67;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=241200,67 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 20 10010767 . G . . END=10010831 GT:DP:GQ:MIN_DP:PL 0/0:74:99:61:0,120,1800 -20 10010832 . T C, 2951.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|265538.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|31,44|0,0;DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=265538.00 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 +20 10010832 . T C, 2951.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|265538.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|31,44|0,0;DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=265538,75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 20 10010833 . A . . END=10011074 GT:DP:GQ:MIN_DP:PL 0/0:89:99:73:0,120,1800 -20 10011075 . C T, 1325.77 . AS_RAW_BaseQRankSum=|5.3,1|NaN;AS_RAW_MQ=158400.00|140400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=22,22|22,17|0,0;BaseQRankSum=5.364;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=298800.00;ReadPosRankSum=-1.036 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1354,0,1333,1485,1450,2935:22,22,22,17 +20 10011075 . C T, 1325.77 . AS_RAW_BaseQRankSum=|5.3,1|NaN;AS_RAW_MQ=158400.00|140400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=22,22|22,17|0,0;BaseQRankSum=5.364;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=298800,83;ReadPosRankSum=-1.036 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1354,0,1333,1485,1450,2935:22,22,22,17 20 10011076 . G . . END=10011308 GT:DP:GQ:MIN_DP:PL 0/0:74:99:52:0,120,1800 -20 10011309 . T C, 2692.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|277200.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,47|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=277200.00 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 +20 10011309 . T C, 2692.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|277200.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,47|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=277200,77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 20 10011310 . G . . END=10011516 GT:DP:GQ:MIN_DP:PL 0/0:80:99:70:0,120,1800 -20 10011517 . GAA G,GA,GAAA, 490.73 . AS_RAW_BaseQRankSum=|-0.9,1|0.9,1|0.2,1|NaN;AS_RAW_MQ=133200.00|7200.00|104700.00|21600.00|0.00;AS_RAW_MQRankSum=|0.0,1|2.0,1|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|0.6,1|-1.0,1|NaN;AS_SB_TABLE=23,14|0,2|15,13|4,2|0,0;BaseQRankSum=0.690;DP=91;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=1.797;RAW_MQ=326510.00;ReadPosRankSum=0.315 GT:AD:DP:GQ:PL:SB 0/2:37,2,28,6,0:73:99:528,611,2120,0,1042,875,604,1499,722,1648,667,1700,966,1470,1638:23,14,19,17 +20 10011517 . GAA G,GA,GAAA, 490.73 . AS_RAW_BaseQRankSum=|-0.9,1|0.9,1|0.2,1|NaN;AS_RAW_MQ=133200.00|7200.00|104700.00|21600.00|0.00;AS_RAW_MQRankSum=|0.0,1|2.0,1|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|0.6,1|-1.0,1|NaN;AS_SB_TABLE=23,14|0,2|15,13|4,2|0,0;BaseQRankSum=0.690;DP=91;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=1.797;RAW_MQandDP=326510,91;ReadPosRankSum=0.315 GT:AD:DP:GQ:PL:SB 0/2:37,2,28,6,0:73:99:528,611,2120,0,1042,875,604,1499,722,1648,667,1700,966,1470,1638:23,14,19,17 20 10011520 . A . . END=10011665 GT:DP:GQ:MIN_DP:PL 0/0:68:99:62:0,120,1800 -20 10011666 . C T, 2961.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|254523.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,30|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=254523.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 +20 10011666 . C T, 2961.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|254523.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,30|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=254523,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 20 10011667 . A . . END=10011938 GT:DP:GQ:MIN_DP:PL 0/0:87:99:64:0,111,1665 -20 10011939 . C T, 2469.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|193043.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|23,38|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=193043.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 +20 10011939 . C T, 2469.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|193043.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|23,38|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=193043,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 20 10011940 . G . . END=10012020 GT:DP:GQ:MIN_DP:PL 0/0:56:99:42:0,101,1575 -20 10012021 . CA C, 1975.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|215907.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|26,40|0,0;DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=228076.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 +20 10012021 . CA C, 1975.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|215907.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|26,40|0,0;DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=228076,70 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 20 10012023 . A . . END=10012147 GT:DP:GQ:MIN_DP:PL 0/0:70:99:38:0,99,1485 20 10012148 . G . . END=10012157 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 20 10012158 . A . . END=10012159 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 @@ -397,7 +397,7 @@ 20 10012355 . T . . END=10012357 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 20 10012358 . G . . END=10012360 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,765 20 10012361 . C . . END=10012361 GT:DP:GQ:MIN_DP:PL 0/0:23:48:23:0,48,720 -20 10012362 . G T, 835.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|66527.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|2,21|0,0;DP=23;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=66527.00 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:864,69,0,864,69,864:0,0,2,21 +20 10012362 . G T, 835.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|66527.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|2,21|0,0;DP=23;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=66527,23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:864,69,0,864,69,864:0,0,2,21 20 10012363 . G . . END=10012364 GT:DP:GQ:MIN_DP:PL 0/0:22:51:21:0,51,765 20 10012365 . G . . END=10012372 GT:DP:GQ:MIN_DP:PL 0/0:21:54:19:0,54,810 20 10012373 . G . . END=10012376 GT:DP:GQ:MIN_DP:PL 0/0:18:51:17:0,51,616 @@ -406,9 +406,9 @@ 20 10012379 . T . . END=10012379 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 20 10012380 . G . . END=10012381 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 20 10012382 . A . . END=10012383 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,585 -20 10012384 . T C, 229.77 . AS_RAW_BaseQRankSum=|-1.8,1|NaN;AS_RAW_MQ=30586.00|20700.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=0,10|2,6|0,0;BaseQRankSum=-1.773;DP=18;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.811;RAW_MQ=51286.00;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:258,0,355,288,379,667:0,10,2,6 +20 10012384 . T C, 229.77 . AS_RAW_BaseQRankSum=|-1.8,1|NaN;AS_RAW_MQ=30586.00|20700.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=0,10|2,6|0,0;BaseQRankSum=-1.773;DP=18;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.811;RAW_MQandDP=51286,18;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:258,0,355,288,379,667:0,10,2,6 20 10012385 . T . . END=10012386 GT:DP:GQ:MIN_DP:PL 0/0:18:39:17:0,39,585 -20 10012387 . T C, 533.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|44086.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|2,14|0,0;DP=16;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=44086.00 GT:AD:DP:GQ:PL:SB 1/1:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 +20 10012387 . T C, 533.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|44086.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|2,14|0,0;DP=16;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=44086,16 GT:AD:DP:GQ:PL:SB 1/1:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 20 10012388 . G . . END=10012395 GT:DP:GQ:MIN_DP:PL 0/0:15:36:13:0,36,540 20 10012396 . G . . END=10012398 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 20 10012399 . G . . END=10012402 GT:DP:GQ:MIN_DP:PL 0/0:16:45:15:0,45,561 @@ -448,22 +448,22 @@ 20 10012473 . G . . END=10012474 GT:DP:GQ:MIN_DP:PL 0/0:20:39:19:0,39,585 20 10012475 . C . . END=10012476 GT:DP:GQ:MIN_DP:PL 0/0:20:36:19:0,36,540 20 10012477 . G . . END=10012478 GT:DP:GQ:MIN_DP:PL 0/0:18:33:17:0,33,495 -20 10012479 . A G, 592.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|45990.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|9,8|0,0;DP=17;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=45990.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 +20 10012479 . A G, 592.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|45990.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|9,8|0,0;DP=17;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=45990,17 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 20 10012480 . G . . END=10012482 GT:DP:GQ:MIN_DP:PL 0/0:16:24:15:0,24,360 20 10012483 . G . . END=10012489 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 20 10012490 . G . . END=10012490 GT:DP:GQ:MIN_DP:PL 0/0:11:22:11:0,22,359 20 10012491 . T . . END=10012491 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,269 20 10012492 . G . . END=10012497 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,304 -20 10012498 . C G, 466.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|22302.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|4,7|0,0;DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=22302.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 +20 10012498 . C G, 466.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|22302.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|4,7|0,0;DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=22302,11 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 20 10012499 . G . . END=10012501 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,334 20 10012502 . C . . END=10012503 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 20 10012504 . C . . END=10012508 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 20 10012509 . A . . END=10012513 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 20 10012514 . C . . END=10012515 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 20 10012516 . G . . END=10012517 GT:DP:GQ:MIN_DP:PL 0/0:10:18:9:0,18,270 -20 10012518 . T C, 406.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|15102.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|4,5|0,0;DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=15102.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 +20 10012518 . T C, 406.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|15102.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|4,5|0,0;DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=15102,9 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 20 10012519 . C . . END=10012520 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 -20 10012521 . C T, 46.77 . AS_RAW_BaseQRankSum=|2.3,1|NaN;AS_RAW_MQ=13910.00|5282.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|1.9,1|NaN;AS_SB_TABLE=4,4|2,1|0,0;BaseQRankSum=2.362;DP=11;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.038;RAW_MQ=19192.00;ReadPosRankSum=1.973 GT:AD:DP:GQ:PL:SB 0/1:8,3,0:11:75:75,0,224,99,233,332:4,4,2,1 +20 10012521 . C T, 46.77 . AS_RAW_BaseQRankSum=|2.3,1|NaN;AS_RAW_MQ=13910.00|5282.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|1.9,1|NaN;AS_SB_TABLE=4,4|2,1|0,0;BaseQRankSum=2.362;DP=11;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.038;RAW_MQandDP=19192,11;ReadPosRankSum=1.973 GT:AD:DP:GQ:PL:SB 0/1:8,3,0:11:75:75,0,224,99,233,332:4,4,2,1 20 10012522 . A . . END=10012525 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,360 20 10012526 . G . . END=10012526 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 20 10012527 . C . . END=10012545 GT:DP:GQ:MIN_DP:PL 0/0:7:18:6:0,18,188 @@ -474,9 +474,9 @@ 20 10012563 . G . . END=10012564 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 20 10012565 . G . . END=10012567 GT:DP:GQ:MIN_DP:PL 0/0:9:24:8:0,24,261 20 10012568 . G . . END=10012569 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,315 -20 10012570 . G GCA, 457.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|12736.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|8,1|0,0;DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=12736.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 +20 10012570 . G GCA, 457.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|12736.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|8,1|0,0;DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=12736,9 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 20 10012571 . G . . END=10012571 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 -20 10012572 . GT G, 457.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|17177.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|10,1|0,0;DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=17177.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 +20 10012572 . GT G, 457.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|17177.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|10,1|0,0;DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=17177,11 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 20 10012574 . G . . END=10012575 GT:DP:GQ:MIN_DP:PL 0/0:12:30:11:0,30,450 20 10012576 . T . . END=10012577 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 20 10012578 . G . . END=10012578 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 @@ -496,11 +496,11 @@ 20 10012622 . G . . END=10012624 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 20 10012625 . C . . END=10012625 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 20 10012626 . C . . END=10012630 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,900 -20 10012631 . C CG, 484.73 . AS_RAW_BaseQRankSum=|-1.1,1|NaN;AS_RAW_MQ=23282.00|25783.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.9,1|NaN;AS_SB_TABLE=8,0|9,4|0,0;BaseQRankSum=-1.030;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.670;RAW_MQ=49065.00;ReadPosRankSum=-1.813 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 +20 10012631 . C CG, 484.73 . AS_RAW_BaseQRankSum=|-1.1,1|NaN;AS_RAW_MQ=23282.00|25783.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.9,1|NaN;AS_SB_TABLE=8,0|9,4|0,0;BaseQRankSum=-1.030;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.670;RAW_MQandDP=49065,21;ReadPosRankSum=-1.813 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 20 10012632 . G . . END=10012632 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 20 10012633 . C . . END=10012633 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 20 10012634 . C . . END=10012635 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 -20 10012636 . G C, 527.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=23282.00|29383.00|0.00;AS_RAW_MQRankSum=|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|-2.0,1|NaN;AS_SB_TABLE=8,0|10,4|0,0;BaseQRankSum=2.711;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.513;RAW_MQ=52665.00;ReadPosRankSum=-1.915 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 +20 10012636 . G C, 527.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=23282.00|29383.00|0.00;AS_RAW_MQRankSum=|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|-2.0,1|NaN;AS_SB_TABLE=8,0|10,4|0,0;BaseQRankSum=2.711;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.513;RAW_MQandDP=52665,22;ReadPosRankSum=-1.915 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 20 10012637 . A . . END=10012639 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 20 10012640 . C . . END=10012640 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 20 10012641 . T . . END=10012662 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,895 @@ -518,7 +518,7 @@ 20 10012703 . G . . END=10012706 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 20 10012707 . T . . END=10012707 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1121 20 10012708 . G . . END=10012713 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 -20 10012714 . G C, 1300.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|98462.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|29,6|0,0;DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=98462.00 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 +20 10012714 . G C, 1300.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|98462.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|29,6|0,0;DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=98462,35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 20 10012715 . C . . END=10012715 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 20 10012716 . A . . END=10012718 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 20 10012719 . G . . END=10012722 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 @@ -532,7 +532,7 @@ 20 10012743 . C . . END=10012746 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 20 10012747 . C . . END=10012747 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 20 10012748 . A . . END=10012750 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 -20 10012751 . T C, 937.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|78546.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|17,13|0,0;DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=78546.00 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 +20 10012751 . T C, 937.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|78546.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|17,13|0,0;DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=78546,30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 20 10012752 . C . . END=10012752 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 20 10012753 . T . . END=10012753 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,1014 20 10012754 . C . . END=10012754 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 @@ -569,13 +569,13 @@ 20 10012922 . A . . END=10012926 GT:DP:GQ:MIN_DP:PL 0/0:38:87:36:0,87,1305 20 10012927 . A . . END=10012927 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1391 20 10012928 . C . . END=10013118 GT:DP:GQ:MIN_DP:PL 0/0:66:99:38:0,99,1485 -20 10013119 . C T, 1011.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=81510.00|74871.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=19,10|17,13|0,0;BaseQRankSum=2.724;DP=59;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.089;RAW_MQ=156381.00;ReadPosRankSum=0.159 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 +20 10013119 . C T, 1011.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=81510.00|74871.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=19,10|17,13|0,0;BaseQRankSum=2.724;DP=59;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.089;RAW_MQandDP=156381,59;ReadPosRankSum=0.159 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 20 10013120 . A . . END=10013573 GT:DP:GQ:MIN_DP:PL 0/0:66:99:52:0,120,1800 -20 10013574 . G A, 1050.77 . AS_RAW_BaseQRankSum=|3.4,1|NaN;AS_RAW_MQ=128479.00|104119.00|0.00;AS_RAW_MQRankSum=|-0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|NaN;AS_SB_TABLE=15,23|7,24|0,0;BaseQRankSum=3.469;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.271;RAW_MQ=232598.00;ReadPosRankSum=0.706 GT:AD:DP:GQ:PL:SB 0/1:38,31,0:69:99:1079,0,1301,1194,1394,2588:15,23,7,24 +20 10013574 . G A, 1050.77 . AS_RAW_BaseQRankSum=|3.4,1|NaN;AS_RAW_MQ=128479.00|104119.00|0.00;AS_RAW_MQRankSum=|-0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|NaN;AS_SB_TABLE=15,23|7,24|0,0;BaseQRankSum=3.469;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.271;RAW_MQandDP=232598,69;ReadPosRankSum=0.706 GT:AD:DP:GQ:PL:SB 0/1:38,31,0:69:99:1079,0,1301,1194,1394,2588:15,23,7,24 20 10013575 . T . . END=10014589 GT:DP:GQ:MIN_DP:PL 0/0:72:99:43:0,101,1658 20 10014590 . A . . END=10014590 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1625 20 10014591 . T . . END=10014989 GT:DP:GQ:MIN_DP:PL 0/0:72:99:42:0,116,1732 -20 10014990 . C CAT, 1237.73 . AS_RAW_BaseQRankSum=|1.9,1|NaN;AS_RAW_MQ=134569.00|147200.00|0.00;AS_RAW_MQRankSum=|3.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.5,1|NaN;AS_SB_TABLE=28,10|25,13|0,0;BaseQRankSum=1.930;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.107;RAW_MQ=321369.00;ReadPosRankSum=-0.437 GT:AD:DP:GQ:PL:SB 0/1:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 +20 10014990 . C CAT, 1237.73 . AS_RAW_BaseQRankSum=|1.9,1|NaN;AS_RAW_MQ=134569.00|147200.00|0.00;AS_RAW_MQRankSum=|3.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.5,1|NaN;AS_SB_TABLE=28,10|25,13|0,0;BaseQRankSum=1.930;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.107;RAW_MQandDP=321369,87;ReadPosRankSum=-0.437 GT:AD:DP:GQ:PL:SB 0/1:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 20 10014991 . A . . END=10015385 GT:DP:GQ:MIN_DP:PL 0/0:73:99:41:0,102,1530 20 10015386 . G . . END=10015388 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1350 20 10015389 . A . . END=10015390 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1215 @@ -638,7 +638,7 @@ 20 10015659 . G . . END=10015661 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 20 10015662 . G . . END=10015675 GT:DP:GQ:MIN_DP:PL 0/0:13:33:11:0,33,418 20 10015676 . G . . END=10015678 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 -20 10015679 . C T, 140.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=18000.00|18000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=5,0|5,0|0,0;BaseQRankSum=0.200;DP=10;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=36000.00;ReadPosRankSum=0.497 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 +20 10015679 . C T, 140.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=18000.00|18000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=5,0|5,0|0,0;BaseQRankSum=0.200;DP=10;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=36000,10;ReadPosRankSum=0.497 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 20 10015680 . G . . END=10015683 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 20 10015684 . C . . END=10015687 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 20 10015688 . C . . END=10015690 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,292 @@ -661,7 +661,7 @@ 20 10015743 . C . . END=10015747 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 20 10015748 . G . . END=10015752 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,608 20 10015753 . T . . END=10015760 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,757 -20 10015761 . T C, 344.77 . AS_RAW_BaseQRankSum=|-2.0,1|NaN;AS_RAW_MQ=29641.00|46800.00|0.00;AS_RAW_MQRankSum=|1.2,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=9,0|12,1|0,0;BaseQRankSum=-1.982;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.294;RAW_MQ=76441.00;ReadPosRankSum=1.805 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 +20 10015761 . T C, 344.77 . AS_RAW_BaseQRankSum=|-2.0,1|NaN;AS_RAW_MQ=29641.00|46800.00|0.00;AS_RAW_MQRankSum=|1.2,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=9,0|12,1|0,0;BaseQRankSum=-1.982;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.294;RAW_MQandDP=76441,22;ReadPosRankSum=1.805 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 20 10015762 . A . . END=10015766 GT:DP:GQ:MIN_DP:PL 0/0:23:66:22:0,66,839 20 10015767 . C . . END=10015769 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,906 20 10015770 . C . . END=10015770 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 @@ -685,21 +685,21 @@ 20 10017080 . A . . END=10017519 GT:DP:GQ:MIN_DP:PL 0/0:61:99:45:0,109,1710 20 10017520 . A . . END=10017520 GT:DP:GQ:MIN_DP:PL 0/0:51:64:51:0,64,1772 20 10017521 . C . . END=10018157 GT:DP:GQ:MIN_DP:PL 0/0:77:99:45:0,114,1710 -20 10018158 . G C, 1639.77 . AS_RAW_BaseQRankSum=|5.2,1|NaN;AS_RAW_MQ=141769.00|172800.00|0.00;AS_RAW_MQRankSum=|1.1,1|NaN;AS_RAW_ReadPosRankSum=|1.1,1|NaN;AS_SB_TABLE=18,22|20,28|0,0;BaseQRankSum=5.213;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.118;RAW_MQ=318169.00;ReadPosRankSum=1.179 GT:AD:DP:GQ:PL:SB 0/1:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 +20 10018158 . G C, 1639.77 . AS_RAW_BaseQRankSum=|5.2,1|NaN;AS_RAW_MQ=141769.00|172800.00|0.00;AS_RAW_MQRankSum=|1.1,1|NaN;AS_RAW_ReadPosRankSum=|1.1,1|NaN;AS_SB_TABLE=18,22|20,28|0,0;BaseQRankSum=5.213;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.118;RAW_MQandDP=318169,89;ReadPosRankSum=1.179 GT:AD:DP:GQ:PL:SB 0/1:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 20 10018159 . C . . END=10018554 GT:DP:GQ:MIN_DP:PL 0/0:82:99:68:0,120,1800 -20 10018555 . G A, 1567.77 . AS_RAW_BaseQRankSum=|-0.7,1|NaN;AS_RAW_MQ=126000.00|162000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=20,15|21,24|0,0;BaseQRankSum=-0.627;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=288000.00;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL:SB 0/1:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 +20 10018555 . G A, 1567.77 . AS_RAW_BaseQRankSum=|-0.7,1|NaN;AS_RAW_MQ=126000.00|162000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=20,15|21,24|0,0;BaseQRankSum=-0.627;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=288000,80;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL:SB 0/1:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 20 10018556 . C . . END=10019092 GT:DP:GQ:MIN_DP:PL 0/0:83:99:70:0,120,1800 -20 10019093 . A G, 1244.77 . AS_RAW_BaseQRankSum=|0.4,1|NaN;AS_RAW_MQ=116041.00|129600.00|0.00;AS_RAW_MQRankSum=|1.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=15,18|19,17|0,0;BaseQRankSum=0.452;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.073;RAW_MQ=245641.00;ReadPosRankSum=-0.252 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 +20 10019093 . A G, 1244.77 . AS_RAW_BaseQRankSum=|0.4,1|NaN;AS_RAW_MQ=116041.00|129600.00|0.00;AS_RAW_MQRankSum=|1.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=15,18|19,17|0,0;BaseQRankSum=0.452;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.073;RAW_MQandDP=245641,69;ReadPosRankSum=-0.252 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 20 10019094 . C . . END=10020228 GT:DP:GQ:MIN_DP:PL 0/0:79:99:60:0,120,1800 -20 10020229 . G A, 1538.77 . AS_RAW_BaseQRankSum=|5.7,1|NaN;AS_RAW_MQ=134569.00|155641.00|0.00;AS_RAW_MQRankSum=|0.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=22,16|24,20|0,0;BaseQRankSum=5.792;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.104;RAW_MQ=290210.00;ReadPosRankSum=-0.549 GT:AD:DP:GQ:PL:SB 0/1:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 +20 10020229 . G A, 1538.77 . AS_RAW_BaseQRankSum=|5.7,1|NaN;AS_RAW_MQ=134569.00|155641.00|0.00;AS_RAW_MQRankSum=|0.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=22,16|24,20|0,0;BaseQRankSum=5.792;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.104;RAW_MQandDP=290210,82;ReadPosRankSum=-0.549 GT:AD:DP:GQ:PL:SB 0/1:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 20 10020230 . T . . END=10020889 GT:DP:GQ:MIN_DP:PL 0/0:80:99:42:0,99,1485 20 10020890 . A . . END=10020896 GT:DP:GQ:MIN_DP:PL 0/0:42:93:40:0,93,1395 20 10020897 . C . . END=10020918 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1530 20 10020919 . T . . END=10020919 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1765 20 10020920 . T . . END=10023688 GT:DP:GQ:MIN_DP:PL 0/0:80:99:46:0,105,1721 -20 10023689 . G A, 1852.77 . AS_RAW_BaseQRankSum=|2.1,1|NaN;AS_RAW_MQ=102169.00|183600.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|1.1,1|NaN;AS_SB_TABLE=16,13|26,25|0,0;BaseQRankSum=2.144;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.352;RAW_MQ=285769.00;ReadPosRankSum=1.162 GT:AD:DP:GQ:PL:SB 0/1:29,51,0:80:99:1881,0,946,1968,1099,3067:16,13,26,25 +20 10023689 . G A, 1852.77 . AS_RAW_BaseQRankSum=|2.1,1|NaN;AS_RAW_MQ=102169.00|183600.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|1.1,1|NaN;AS_SB_TABLE=16,13|26,25|0,0;BaseQRankSum=2.144;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.352;RAW_MQandDP=285769,80;ReadPosRankSum=1.162 GT:AD:DP:GQ:PL:SB 0/1:29,51,0:80:99:1881,0,946,1968,1099,3067:16,13,26,25 20 10023690 . G . . END=10024106 GT:DP:GQ:MIN_DP:PL 0/0:70:99:57:0,120,1800 -20 10024107 . C T, 1694.77 . AS_RAW_BaseQRankSum=|5.7,1|NaN;AS_RAW_MQ=136800.00|166763.00|0.00;AS_RAW_MQRankSum=|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=21,17|28,20|0,0;BaseQRankSum=5.770;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.546;RAW_MQ=303563.00;ReadPosRankSum=0.148 GT:AD:DP:GQ:PL:SB 0/1:38,48,0:86:99:1723,0,1086,1837,1230,3068:21,17,28,20 +20 10024107 . C T, 1694.77 . AS_RAW_BaseQRankSum=|5.7,1|NaN;AS_RAW_MQ=136800.00|166763.00|0.00;AS_RAW_MQRankSum=|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=21,17|28,20|0,0;BaseQRankSum=5.770;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.546;RAW_MQandDP=303563,86;ReadPosRankSum=0.148 GT:AD:DP:GQ:PL:SB 0/1:38,48,0:86:99:1723,0,1086,1837,1230,3068:21,17,28,20 20 10024108 . G . . END=10024282 GT:DP:GQ:MIN_DP:PL 0/0:90:99:57:0,120,1800 20 10024283 . C . . END=10024283 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1777 20 10024284 . T . . END=10024287 GT:DP:GQ:MIN_DP:PL 0/0:71:99:65:0,120,1800 @@ -710,7 +710,7 @@ 20 10024297 . T . . END=10024297 GT:DP:GQ:MIN_DP:PL 0/0:68:65:68:0,65,2188 20 10024298 . T . . END=10024298 GT:DP:GQ:MIN_DP:PL 0/0:66:59:66:0,59,2080 20 10024299 . C . . END=10024299 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1480 -20 10024300 . CTT C,CT,CTTTT, 87.76 . AS_RAW_BaseQRankSum=|1.7,1|1.4,1|2.3,1|NaN;AS_RAW_MQ=8041.00|5858.00|5282.00|20523.00|0.00;AS_RAW_MQRankSum=|-1.1,1|-0.6,1|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.9,1|-2.0,1|-0.5,1|NaN;AS_SB_TABLE=1,2|3,1|2,1|6,2|0,0;BaseQRankSum=2.446;DP=50;ExcessHet=3.0103;MLEAC=1,0,1,0;MLEAF=0.500,0.00,0.500,0.00;MQRankSum=-0.600;RAW_MQ=134695.00;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 1/3:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 +20 10024300 . CTT C,CT,CTTTT, 87.76 . AS_RAW_BaseQRankSum=|1.7,1|1.4,1|2.3,1|NaN;AS_RAW_MQ=8041.00|5858.00|5282.00|20523.00|0.00;AS_RAW_MQRankSum=|-1.1,1|-0.6,1|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.9,1|-2.0,1|-0.5,1|NaN;AS_SB_TABLE=1,2|3,1|2,1|6,2|0,0;BaseQRankSum=2.446;DP=50;ExcessHet=3.0103;MLEAC=1,0,1,0;MLEAF=0.500,0.00,0.500,0.00;MQRankSum=-0.600;RAW_MQandDP=134695,50;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 1/3:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 20 10024303 . T . . END=10024303 GT:DP:GQ:MIN_DP:PL 0/0:67:57:67:0,57,855 20 10024304 . T . . END=10024307 GT:DP:GQ:MIN_DP:PL 0/0:69:63:68:0,63,945 20 10024308 . T . . END=10024310 GT:DP:GQ:MIN_DP:PL 0/0:70:78:70:0,78,1170 @@ -725,41 +725,41 @@ 20 10024325 . G . . END=10024325 GT:DP:GQ:MIN_DP:PL 0/0:47:33:47:0,33,1611 20 10024326 . A . . END=10024326 GT:DP:GQ:MIN_DP:PL 0/0:44:58:44:0,58,1605 20 10024327 . G . . END=10026356 GT:DP:GQ:MIN_DP:PL 0/0:79:99:39:0,105,1509 -20 10026357 . T C, 1166.77 . AS_RAW_BaseQRankSum=|-1.7,1|NaN;AS_RAW_MQ=95810.00|119307.00|0.00;AS_RAW_MQRankSum=|-0.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=10,18|20,15|0,0;BaseQRankSum=-1.700;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.148;RAW_MQ=215117.00;ReadPosRankSum=-0.076 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 +20 10026357 . T C, 1166.77 . AS_RAW_BaseQRankSum=|-1.7,1|NaN;AS_RAW_MQ=95810.00|119307.00|0.00;AS_RAW_MQRankSum=|-0.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=10,18|20,15|0,0;BaseQRankSum=-1.700;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.148;RAW_MQandDP=215117,63;ReadPosRankSum=-0.076 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 20 10026358 . A . . END=10026793 GT:DP:GQ:MIN_DP:PL 0/0:72:99:41:0,102,1530 -20 10026794 . C T, 1084.77 . AS_RAW_BaseQRankSum=|2.8,1|NaN;AS_RAW_MQ=68400.00|116041.00|0.00;AS_RAW_MQRankSum=|-0.8,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=7,12|15,18|0,0;BaseQRankSum=2.828;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.719;RAW_MQ=184441.00;ReadPosRankSum=-0.533 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 +20 10026794 . C T, 1084.77 . AS_RAW_BaseQRankSum=|2.8,1|NaN;AS_RAW_MQ=68400.00|116041.00|0.00;AS_RAW_MQRankSum=|-0.8,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=7,12|15,18|0,0;BaseQRankSum=2.828;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.719;RAW_MQandDP=184441,52;ReadPosRankSum=-0.533 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 20 10026795 . G . . END=10027233 GT:DP:GQ:MIN_DP:PL 0/0:70:99:52:0,115,1800 -20 10027234 . A ATTAG, 1320.73 . AS_RAW_BaseQRankSum=|-0.5,1|NaN;AS_RAW_MQ=119641.00|106210.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|-1.0,1|NaN;AS_SB_TABLE=18,16|15,20|0,0;BaseQRankSum=-0.406;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.845;RAW_MQ=236651.00;ReadPosRankSum=-0.979 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 +20 10027234 . A ATTAG, 1320.73 . AS_RAW_BaseQRankSum=|-0.5,1|NaN;AS_RAW_MQ=119641.00|106210.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|-1.0,1|NaN;AS_SB_TABLE=18,16|15,20|0,0;BaseQRankSum=-0.406;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.845;RAW_MQandDP=236651,72;ReadPosRankSum=-0.979 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 20 10027235 . T . . END=10027867 GT:DP:GQ:MIN_DP:PL 0/0:78:99:56:0,120,1800 -20 10027868 . A G, 1739.77 . AS_RAW_BaseQRankSum=|-5.8,1|NaN;AS_RAW_MQ=155641.00|159241.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=19,25|26,19|0,0;BaseQRankSum=-5.793;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.032;RAW_MQ=314882.00;ReadPosRankSum=1.872 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 +20 10027868 . A G, 1739.77 . AS_RAW_BaseQRankSum=|-5.8,1|NaN;AS_RAW_MQ=155641.00|159241.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=19,25|26,19|0,0;BaseQRankSum=-5.793;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.032;RAW_MQandDP=314882,89;ReadPosRankSum=1.872 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 20 10027869 . A . . END=10027871 GT:DP:GQ:MIN_DP:PL 0/0:86:99:85:0,120,1800 -20 10027872 . A G, 1724.77 . AS_RAW_BaseQRankSum=|-5.5,1|NaN;AS_RAW_MQ=141241.00|159241.00|0.00;AS_RAW_MQRankSum=|0.1,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=16,24|26,19|0,0;BaseQRankSum=-5.491;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.101;RAW_MQ=300482.00;ReadPosRankSum=1.053 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 +20 10027872 . A G, 1724.77 . AS_RAW_BaseQRankSum=|-5.5,1|NaN;AS_RAW_MQ=141241.00|159241.00|0.00;AS_RAW_MQRankSum=|0.1,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=16,24|26,19|0,0;BaseQRankSum=-5.491;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.101;RAW_MQandDP=300482,85;ReadPosRankSum=1.053 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 20 10027873 . G . . END=10028866 GT:DP:GQ:MIN_DP:PL 0/0:80:99:55:0,120,1800 -20 10028867 . A ATG, 1106.73 . AS_RAW_BaseQRankSum=|-0.9,1|NaN;AS_RAW_MQ=115200.00|150800.00|0.00;AS_RAW_MQRankSum=|2.7,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=11,21|18,21|0,0;BaseQRankSum=-0.874;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.711;RAW_MQ=338841.00;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL:SB 0/1:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 +20 10028867 . A ATG, 1106.73 . AS_RAW_BaseQRankSum=|-0.9,1|NaN;AS_RAW_MQ=115200.00|150800.00|0.00;AS_RAW_MQRankSum=|2.7,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=11,21|18,21|0,0;BaseQRankSum=-0.874;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.711;RAW_MQandDP=338841,92;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL:SB 0/1:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 20 10028868 . T . . END=10030187 GT:DP:GQ:MIN_DP:PL 0/0:80:99:60:0,120,1800 -20 10030188 . T A, 1372.77 . AS_RAW_BaseQRankSum=|0.7,1|NaN;AS_RAW_MQ=151200.00|137641.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=24,18|15,24|0,0;BaseQRankSum=0.711;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.013;RAW_MQ=288841.00;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL:SB 0/1:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 +20 10030188 . T A, 1372.77 . AS_RAW_BaseQRankSum=|0.7,1|NaN;AS_RAW_MQ=151200.00|137641.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=24,18|15,24|0,0;BaseQRankSum=0.711;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.013;RAW_MQandDP=288841,81;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL:SB 0/1:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 20 10030189 . G . . END=10030566 GT:DP:GQ:MIN_DP:PL 0/0:71:99:41:0,103,1575 20 10030567 . G . . END=10030567 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1511 20 10030568 . C . . END=10031253 GT:DP:GQ:MIN_DP:PL 0/0:70:99:42:0,114,1710 -20 10031254 . A AT, 1463.73 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=136800.00|168269.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=27,11|25,22|0,0;BaseQRankSum=-0.091;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.017;RAW_MQ=309510.00;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL:SB 0/1:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 +20 10031254 . A AT, 1463.73 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=136800.00|168269.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=27,11|25,22|0,0;BaseQRankSum=-0.091;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.017;RAW_MQandDP=309510,87;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL:SB 0/1:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 20 10031255 . T . . END=10031341 GT:DP:GQ:MIN_DP:PL 0/0:95:99:86:0,120,1800 -20 10031342 . G A, 1834.77 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=147600.00|184441.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=22,19|31,21|0,0;BaseQRankSum=1.833;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQ=332041.00;ReadPosRankSum=-0.012 GT:AD:DP:GQ:PL:SB 0/1:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 +20 10031342 . G A, 1834.77 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=147600.00|184441.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=22,19|31,21|0,0;BaseQRankSum=1.833;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQandDP=332041,93;ReadPosRankSum=-0.012 GT:AD:DP:GQ:PL:SB 0/1:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 20 10031343 . A . . END=10031797 GT:DP:GQ:MIN_DP:PL 0/0:91:99:66:0,120,1800 -20 10031798 . G A, 4296.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|369410.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|57,47|0,0;DP=104;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=369410.00 GT:AD:DP:GQ:PL:SB 1/1:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 +20 10031798 . G A, 4296.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|369410.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|57,47|0,0;DP=104;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=369410,104 GT:AD:DP:GQ:PL:SB 1/1:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 20 10031799 . T . . END=10031826 GT:DP:GQ:MIN_DP:PL 0/0:105:99:101:0,120,1800 -20 10031827 . C T, 2004.77 . AS_RAW_BaseQRankSum=|3.5,1|NaN;AS_RAW_MQ=187200.00|199369.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=32,20|29,27|0,0;BaseQRankSum=3.552;DP=108;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.945;RAW_MQ=386569.00;ReadPosRankSum=-1.396 GT:AD:DP:GQ:PL:SB 0/1:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 +20 10031827 . C T, 2004.77 . AS_RAW_BaseQRankSum=|3.5,1|NaN;AS_RAW_MQ=187200.00|199369.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=32,20|29,27|0,0;BaseQRankSum=3.552;DP=108;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.945;RAW_MQandDP=386569,108;ReadPosRankSum=-1.396 GT:AD:DP:GQ:PL:SB 0/1:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 20 10031828 . T . . END=10032093 GT:DP:GQ:MIN_DP:PL 0/0:102:99:83:0,120,1800 -20 10032094 . G A, 1220.77 . AS_RAW_BaseQRankSum=|5.4,1|NaN;AS_RAW_MQ=169200.00|129600.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=14,33|16,20|0,0;BaseQRankSum=5.488;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=298800.00;ReadPosRankSum=-0.579 GT:AD:DP:GQ:PL:SB 0/1:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 +20 10032094 . G A, 1220.77 . AS_RAW_BaseQRankSum=|5.4,1|NaN;AS_RAW_MQ=169200.00|129600.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=14,33|16,20|0,0;BaseQRankSum=5.488;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=298800,83;ReadPosRankSum=-0.579 GT:AD:DP:GQ:PL:SB 0/1:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 20 10032095 . T . . END=10032412 GT:DP:GQ:MIN_DP:PL 0/0:84:99:64:0,120,1800 -20 10032413 . T G, 869.77 . AS_RAW_BaseQRankSum=|-6.2,1|NaN;AS_RAW_MQ=123769.00|109369.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=15,20|20,11|0,0;BaseQRankSum=-6.142;DP=66;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.065;RAW_MQ=233138.00;ReadPosRankSum=-1.003 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 +20 10032413 . T G, 869.77 . AS_RAW_BaseQRankSum=|-6.2,1|NaN;AS_RAW_MQ=123769.00|109369.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=15,20|20,11|0,0;BaseQRankSum=-6.142;DP=66;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.065;RAW_MQandDP=233138,66;ReadPosRankSum=-1.003 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 20 10032414 . T . . END=10032881 GT:DP:GQ:MIN_DP:PL 0/0:70:99:55:0,120,1800 -20 10032882 . A T, 1202.77 . AS_RAW_BaseQRankSum=|-3.7,1|NaN;AS_RAW_MQ=140400.00|126841.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=28,11|22,14|0,0;BaseQRankSum=-3.697;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.014;RAW_MQ=267241.00;ReadPosRankSum=0.626 GT:AD:DP:GQ:PL:SB 0/1:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 +20 10032882 . A T, 1202.77 . AS_RAW_BaseQRankSum=|-3.7,1|NaN;AS_RAW_MQ=140400.00|126841.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=28,11|22,14|0,0;BaseQRankSum=-3.697;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.014;RAW_MQandDP=267241,75;ReadPosRankSum=0.626 GT:AD:DP:GQ:PL:SB 0/1:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 20 10032883 . A . . END=10032971 GT:DP:GQ:MIN_DP:PL 0/0:67:99:61:0,120,1800 -20 10032972 . C CAT, 1122.73 . AS_RAW_BaseQRankSum=|-0.4,1|NaN;AS_RAW_MQ=118800.00|105241.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=17,16|11,19|0,0;BaseQRankSum=-0.354;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.017;RAW_MQ=231241.00;ReadPosRankSum=-1.232 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 +20 10032972 . C CAT, 1122.73 . AS_RAW_BaseQRankSum=|-0.4,1|NaN;AS_RAW_MQ=118800.00|105241.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=17,16|11,19|0,0;BaseQRankSum=-0.354;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.017;RAW_MQandDP=231241,65;ReadPosRankSum=-1.232 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 20 10032973 . T . . END=10033636 GT:DP:GQ:MIN_DP:PL 0/0:78:99:50:0,120,1800 20 10033637 . C . . END=10033637 GT:DP:GQ:MIN_DP:PL 0/0:58:97:58:0,97,2210 20 10033638 . C . . END=10034305 GT:DP:GQ:MIN_DP:PL 0/0:85:99:53:0,120,1800 -20 10034306 . T C, 782.77 . AS_RAW_BaseQRankSum=|-3.7,1|NaN;AS_RAW_MQ=160610.00|104400.00|0.00;AS_RAW_MQRankSum=|1.1,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=24,22|14,15|0,0;BaseQRankSum=-3.661;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.150;RAW_MQ=268610.00;ReadPosRankSum=0.539 GT:AD:DP:GQ:PL:SB 0/1:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 +20 10034306 . T C, 782.77 . AS_RAW_BaseQRankSum=|-3.7,1|NaN;AS_RAW_MQ=160610.00|104400.00|0.00;AS_RAW_MQRankSum=|1.1,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=24,22|14,15|0,0;BaseQRankSum=-3.661;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.150;RAW_MQandDP=268610,76;ReadPosRankSum=0.539 GT:AD:DP:GQ:PL:SB 0/1:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 20 10034307 . T . . END=10036106 GT:DP:GQ:MIN_DP:PL 0/0:79:99:55:0,120,1800 20 10036107 . T . . END=10036107 GT:DP:GQ:MIN_DP:PL 0/0:67:1:67:0,1,1807 20 10036108 . C . . END=10036140 GT:DP:GQ:MIN_DP:PL 0/0:53:99:41:0,102,1504 @@ -773,7 +773,7 @@ 20 10036158 . T . . END=10036160 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,117,1755 20 10036161 . T . . END=10036161 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1514 20 10036162 . G . . END=10036929 GT:DP:GQ:MIN_DP:PL 0/0:76:99:43:0,113,1513 -20 10036930 . CGATAGCCCTAGCCCTAGATA C, 1036.73 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=140400.00|58242.00|0.00;AS_RAW_MQRankSum=|-4.1,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=11,28|15,14|0,0;BaseQRankSum=0.200;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.048;RAW_MQ=274847.00;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL:SB 0/1:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 +20 10036930 . CGATAGCCCTAGCCCTAGATA C, 1036.73 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=140400.00|58242.00|0.00;AS_RAW_MQRankSum=|-4.1,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=11,28|15,14|0,0;BaseQRankSum=0.200;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.048;RAW_MQandDP=274847,93;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL:SB 0/1:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 20 10036951 . G . . END=10036956 GT:DP:GQ:MIN_DP:PL 0/0:74:99:70:0,120,1800 20 10036957 . C . . END=10036957 GT:DP:GQ:MIN_DP:PL 0/0:70:37:70:0,37,2472 20 10036958 . C . . END=10036958 GT:DP:GQ:MIN_DP:PL 0/0:70:40:70:0,40,2490 @@ -788,11 +788,11 @@ 20 10036967 . G . . END=10036967 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 20 10036968 . A . . END=10036968 GT:DP:GQ:MIN_DP:PL 0/0:74:64:74:0,64,2707 20 10036969 . T . . END=10037036 GT:DP:GQ:MIN_DP:PL 0/0:87:99:72:0,107,1800 -20 10037037 . C T, 1436.77 . AS_RAW_BaseQRankSum=|3.5,1|NaN;AS_RAW_MQ=143521.00|149741.00|0.00;AS_RAW_MQRankSum=|-1.2,1|NaN;AS_RAW_ReadPosRankSum=|-1.7,1|NaN;AS_SB_TABLE=28,11|28,14|0,0;BaseQRankSum=3.504;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.193;RAW_MQ=293262.00;ReadPosRankSum=-1.609 GT:AD:DP:GQ:PL:SB 0/1:39,42,0:81:99:1465,0,1124,1580,1251,2831:28,11,28,14 +20 10037037 . C T, 1436.77 . AS_RAW_BaseQRankSum=|3.5,1|NaN;AS_RAW_MQ=143521.00|149741.00|0.00;AS_RAW_MQRankSum=|-1.2,1|NaN;AS_RAW_ReadPosRankSum=|-1.7,1|NaN;AS_SB_TABLE=28,11|28,14|0,0;BaseQRankSum=3.504;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.193;RAW_MQandDP=293262,81;ReadPosRankSum=-1.609 GT:AD:DP:GQ:PL:SB 0/1:39,42,0:81:99:1465,0,1124,1580,1251,2831:28,11,28,14 20 10037038 . G . . END=10037109 GT:DP:GQ:MIN_DP:PL 0/0:88:99:75:0,120,1800 -20 10037110 . T TGATA, 2780.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|193419.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,26|0,0;DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=240219.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 +20 10037110 . T TGATA, 2780.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|193419.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|35,26|0,0;DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=240219,74 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 20 10037111 . G . . END=10037143 GT:DP:GQ:MIN_DP:PL 0/0:77:99:68:0,120,1800 -20 10037144 . T TGATAGATA, 1823.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|57470.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|15,21|0,0;DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=187352.00 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1861,127,0,1864,129,1866:0,0,15,21 +20 10037144 . T TGATAGATA, 1823.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|57470.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|15,21|0,0;DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=187352,70 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1861,127,0,1864,129,1866:0,0,15,21 20 10037145 . G . . END=10037186 GT:DP:GQ:MIN_DP:PL 0/0:70:99:65:0,111,1665 20 10037187 . G . . END=10037187 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,2259 20 10037188 . A . . END=10037188 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 @@ -803,40 +803,40 @@ 20 10037194 . T . . END=10037196 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,101,1800 20 10037197 . A . . END=10037198 GT:DP:GQ:MIN_DP:PL 0/0:69:86:68:0,86,2535 20 10037199 . A . . END=10037708 GT:DP:GQ:MIN_DP:PL 0/0:71:99:49:0,120,1800 -20 10037709 . A T, 1003.77 . AS_RAW_BaseQRankSum=|-2.4,1|NaN;AS_RAW_MQ=137641.00|115200.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=24,15|19,13|0,0;BaseQRankSum=-2.367;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.934;RAW_MQ=252841.00;ReadPosRankSum=0.040 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 +20 10037709 . A T, 1003.77 . AS_RAW_BaseQRankSum=|-2.4,1|NaN;AS_RAW_MQ=137641.00|115200.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=24,15|19,13|0,0;BaseQRankSum=-2.367;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.934;RAW_MQandDP=252841,71;ReadPosRankSum=0.040 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 20 10037710 . A . . END=10038582 GT:DP:GQ:MIN_DP:PL 0/0:71:99:54:0,120,1800 20 10038583 . C . . END=10038583 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1806 20 10038584 . A . . END=10039370 GT:DP:GQ:MIN_DP:PL 0/0:76:99:54:0,120,1800 -20 10039371 . T G, 1324.77 . AS_RAW_BaseQRankSum=|-3.3,1|NaN;AS_RAW_MQ=122400.00|144000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=15,19|24,16|0,0;BaseQRankSum=-3.260;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=266400.00;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 +20 10039371 . T G, 1324.77 . AS_RAW_BaseQRankSum=|-3.3,1|NaN;AS_RAW_MQ=122400.00|144000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=15,19|24,16|0,0;BaseQRankSum=-3.260;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=266400,74;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 20 10039372 . T . . END=10040770 GT:DP:GQ:MIN_DP:PL 0/0:76:99:56:0,120,1800 20 10040771 . T . . END=10040771 GT:DP:GQ:MIN_DP:PL 0/0:81:60:81:0,60,2763 -20 10040772 . C CT, 1995.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|178648.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|37,33|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=211048.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2033,210,0,2034,210,2034:0,0,37,33 +20 10040772 . C CT, 1995.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|178648.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|37,33|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=211048,79 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2033,210,0,2034,210,2034:0,0,37,33 20 10040773 . T . . END=10040811 GT:DP:GQ:MIN_DP:PL 0/0:77:99:75:0,120,1800 -20 10040812 . AT A, 2607.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|174499.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,35|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=203299.00 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 +20 10040812 . AT A, 2607.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|174499.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,35|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=203299,79 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 20 10040814 . T . . END=10040820 GT:DP:GQ:MIN_DP:PL 0/0:78:99:77:0,120,1800 -20 10040821 . T A, 1171.77 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=98015.00|101684.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=20,18|21,19|0,0;BaseQRankSum=-0.021;DP=78;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.097;RAW_MQ=199699.00;ReadPosRankSum=-1.385 GT:AD:DP:GQ:PL:SB 0/1:38,40,0:78:99:1200,0,1099,1314,1219,2533:20,18,21,19 +20 10040821 . T A, 1171.77 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=98015.00|101684.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.4,1|NaN;AS_SB_TABLE=20,18|21,19|0,0;BaseQRankSum=-0.021;DP=78;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.097;RAW_MQandDP=199699,78;ReadPosRankSum=-1.385 GT:AD:DP:GQ:PL:SB 0/1:38,40,0:78:99:1200,0,1099,1314,1219,2533:20,18,21,19 20 10040822 . A . . END=10041303 GT:DP:GQ:MIN_DP:PL 0/0:71:99:54:0,119,1800 -20 10041304 . C T, 2765.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|239810.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,34|0,0;DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=239810.00 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 +20 10041304 . C T, 2765.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|239810.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,34|0,0;DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=239810,68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 20 10041305 . G . . END=10041697 GT:DP:GQ:MIN_DP:PL 0/0:62:99:48:0,120,1800 -20 10041698 . C CAT, 0.04 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=151097.00|21600.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=21,27|2,4|0,0;BaseQRankSum=1.887;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.844;RAW_MQ=265497.00;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB 0/1:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 +20 10041698 . C CAT, 0.04 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=151097.00|21600.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=21,27|2,4|0,0;BaseQRankSum=1.887;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.844;RAW_MQandDP=265497,74;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB 0/1:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 20 10041699 . A . . END=10041700 GT:DP:GQ:MIN_DP:PL 0/0:79:99:78:0,120,1800 -20 10041701 . A ATG,ATATG, 1403.73 . AS_RAW_BaseQRankSum=|NaN|0.8,1|NaN;AS_RAW_MQ=23962.00|0.00|149018.00|0.00;AS_RAW_MQRankSum=|NaN|0.3,1|NaN;AS_RAW_ReadPosRankSum=|NaN|-0.3,1|NaN;AS_SB_TABLE=2,6|0,0|21,27|0,0;BaseQRankSum=0.848;DP=78;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.340;RAW_MQ=270590.00;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/2:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 +20 10041701 . A ATG,ATATG, 1403.73 . AS_RAW_BaseQRankSum=|NaN|0.8,1|NaN;AS_RAW_MQ=23962.00|0.00|149018.00|0.00;AS_RAW_MQRankSum=|NaN|0.3,1|NaN;AS_RAW_ReadPosRankSum=|NaN|-0.3,1|NaN;AS_SB_TABLE=2,6|0,0|21,27|0,0;BaseQRankSum=0.848;DP=78;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.340;RAW_MQandDP=270590,78;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/2:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 20 10041702 . T . . END=10042318 GT:DP:GQ:MIN_DP:PL 0/0:64:99:49:0,117,1800 -20 10042319 . C T, 2658.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|229851.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,28|0,0;DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=229851.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 +20 10042319 . C T, 2658.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|229851.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,28|0,0;DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=229851,66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 20 10042320 . C . . END=10042760 GT:DP:GQ:MIN_DP:PL 0/0:74:99:60:0,120,1800 -20 10042761 . A G, 3553.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|327600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|58,33|0,0;DP=91;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=327600.00 GT:AD:DP:GQ:PL:SB 1/1:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 +20 10042761 . A G, 3553.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|327600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|58,33|0,0;DP=91;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=327600,91 GT:AD:DP:GQ:PL:SB 1/1:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 20 10042762 . G . . END=10042828 GT:DP:GQ:MIN_DP:PL 0/0:90:99:78:0,120,1800 -20 10042829 . A G, 3055.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|278569.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|42,36|0,0;DP=78;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=278569.00 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 +20 10042829 . A G, 3055.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|278569.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|42,36|0,0;DP=78;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=278569,78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 20 10042830 . C . . END=10043001 GT:DP:GQ:MIN_DP:PL 0/0:65:99:56:0,120,1800 -20 10043002 . A T, 1287.77 . AS_RAW_BaseQRankSum=|3.9,1|NaN;AS_RAW_MQ=172800.00|136800.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=19,29|18,20|0,0;BaseQRankSum=3.986;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=309600.00;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:48,38,0:86:99:1316,0,1659,1460,1773,3233:19,29,18,20 +20 10043002 . A T, 1287.77 . AS_RAW_BaseQRankSum=|3.9,1|NaN;AS_RAW_MQ=172800.00|136800.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=19,29|18,20|0,0;BaseQRankSum=3.986;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=309600,86;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:48,38,0:86:99:1316,0,1659,1460,1773,3233:19,29,18,20 20 10043003 . C . . END=10044848 GT:DP:GQ:MIN_DP:PL 0/0:78:99:44:0,104,1655 -20 10044849 . A G, 2091.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|209641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|22,37|0,0;DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=209641.00 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2120,177,0,2120,177,2120:0,0,22,37 +20 10044849 . A G, 2091.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|209641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|22,37|0,0;DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=209641,59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2120,177,0,2120,177,2120:0,0,22,37 20 10044850 . C . . END=10045077 GT:DP:GQ:MIN_DP:PL 0/0:69:99:56:0,120,1800 -20 10045078 . G T, 3271.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|279389.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|37,44|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=279389.00 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3300,244,0,3300,244,3300:0,0,37,44 +20 10045078 . G T, 3271.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|279389.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|37,44|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=279389,81 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3300,244,0,3300,244,3300:0,0,37,44 20 10045079 . C . . END=10045641 GT:DP:GQ:MIN_DP:PL 0/0:71:99:60:0,120,1800 -20 10045642 . G C, 3107.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|286610.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,43|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=286610.00 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 +20 10045642 . G C, 3107.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|286610.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,43|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=286610,81 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 20 10045643 . A . . END=10046177 GT:DP:GQ:MIN_DP:PL 0/0:79:99:58:0,120,1800 -20 10046178 . AAGAAAGAAAG A, 2159.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|100945.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|23,27|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=140545.00 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 +20 10046178 . AAGAAAGAAAG A, 2159.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|100945.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|23,27|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140545,61 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 20 10046189 . A . . END=10046435 GT:DP:GQ:MIN_DP:PL 0/0:67:99:52:0,108,1620 20 10046436 . A . . END=10046438 GT:DP:GQ:MIN_DP:PL 0/0:68:96:65:0,96,1440 20 10046439 . G . . END=10046439 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,99,1485 @@ -858,7 +858,7 @@ 20 10046485 . G . . END=10046491 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1440 20 10046492 . T . . END=10046492 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1478 20 10046493 . T . . END=10046536 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,108,1620 -20 10046537 . A G, 819.77 . AS_RAW_BaseQRankSum=|-4.0,1|NaN;AS_RAW_MQ=81487.00|87846.00|0.00;AS_RAW_MQRankSum=|0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|NaN;AS_SB_TABLE=13,15|10,19|0,0;BaseQRankSum=-3.909;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.395;RAW_MQ=169333.00;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:848,0,902,932,988,1920:13,15,10,19 +20 10046537 . A G, 819.77 . AS_RAW_BaseQRankSum=|-4.0,1|NaN;AS_RAW_MQ=81487.00|87846.00|0.00;AS_RAW_MQRankSum=|0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.7,1|NaN;AS_SB_TABLE=13,15|10,19|0,0;BaseQRankSum=-3.909;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.395;RAW_MQandDP=169333,57;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:848,0,902,932,988,1920:13,15,10,19 20 10046538 . T . . END=10046635 GT:DP:GQ:MIN_DP:PL 0/0:57:99:46:0,99,1620 20 10046636 . T . . END=10046636 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1722 20 10046637 . T . . END=10046637 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,104,1719 @@ -866,15 +866,15 @@ 20 10046639 . T . . END=10050160 GT:DP:GQ:MIN_DP:PL 0/0:78:99:43:0,101,1614 20 10050161 . A . . END=10050161 GT:DP:GQ:MIN_DP:PL 0/0:68:75:68:0,75,2271 20 10050162 . C . . END=10050827 GT:DP:GQ:MIN_DP:PL 0/0:78:99:52:0,120,1800 -20 10050828 . T C, 1227.77 . AS_RAW_BaseQRankSum=|-2.8,1|NaN;AS_RAW_MQ=173641.00|133200.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=28,21|18,19|0,0;BaseQRankSum=-2.704;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.892;RAW_MQ=306841.00;ReadPosRankSum=-0.140 GT:AD:DP:GQ:PL:SB 0/1:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 +20 10050828 . T C, 1227.77 . AS_RAW_BaseQRankSum=|-2.8,1|NaN;AS_RAW_MQ=173641.00|133200.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=28,21|18,19|0,0;BaseQRankSum=-2.704;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.892;RAW_MQandDP=306841,86;ReadPosRankSum=-0.140 GT:AD:DP:GQ:PL:SB 0/1:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 20 10050829 . T . . END=10051447 GT:DP:GQ:MIN_DP:PL 0/0:68:99:40:0,99,1485 -20 10051448 . T C, 1134.77 . AS_RAW_BaseQRankSum=|-0.6,1|NaN;AS_RAW_MQ=126000.00|121010.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=27,8|23,12|0,0;BaseQRankSum=-0.501;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.404;RAW_MQ=247010.00;ReadPosRankSum=-0.705 GT:AD:DP:GQ:PL:SB 0/1:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 +20 10051448 . T C, 1134.77 . AS_RAW_BaseQRankSum=|-0.6,1|NaN;AS_RAW_MQ=126000.00|121010.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=27,8|23,12|0,0;BaseQRankSum=-0.501;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.404;RAW_MQandDP=247010,70;ReadPosRankSum=-0.705 GT:AD:DP:GQ:PL:SB 0/1:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 20 10051449 . T . . END=10052687 GT:DP:GQ:MIN_DP:PL 0/0:82:99:55:0,114,1800 -20 10052688 . C A, 1062.77 . AS_RAW_BaseQRankSum=|0.1,1|NaN;AS_RAW_MQ=159769.00|115200.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|1.4,1|NaN;AS_SB_TABLE=27,18|16,16|0,0;BaseQRankSum=0.180;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.870;RAW_MQ=274969.00;ReadPosRankSum=1.443 GT:AD:DP:GQ:PL:SB 0/1:45,32,0:77:99:1091,0,1645,1226,1741,2967:27,18,16,16 +20 10052688 . C A, 1062.77 . AS_RAW_BaseQRankSum=|0.1,1|NaN;AS_RAW_MQ=159769.00|115200.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|1.4,1|NaN;AS_SB_TABLE=27,18|16,16|0,0;BaseQRankSum=0.180;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.870;RAW_MQandDP=274969,77;ReadPosRankSum=1.443 GT:AD:DP:GQ:PL:SB 0/1:45,32,0:77:99:1091,0,1645,1226,1741,2967:27,18,16,16 20 10052689 . A . . END=10058021 GT:DP:GQ:MIN_DP:PL 0/0:74:99:36:0,99,1485 -20 10058022 . T C, 975.77 . AS_RAW_BaseQRankSum=|-2.4,1|NaN;AS_RAW_MQ=125138.00|112441.00|0.00;AS_RAW_MQRankSum=|0.4,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=16,20|13,19|0,0;BaseQRankSum=-2.346;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.466;RAW_MQ=237579.00;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:1004,0,1261,1112,1357,2469:16,20,13,19 +20 10058022 . T C, 975.77 . AS_RAW_BaseQRankSum=|-2.4,1|NaN;AS_RAW_MQ=125138.00|112441.00|0.00;AS_RAW_MQRankSum=|0.4,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=16,20|13,19|0,0;BaseQRankSum=-2.346;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.466;RAW_MQandDP=237579,68;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:1004,0,1261,1112,1357,2469:16,20,13,19 20 10058023 . A . . END=10062934 GT:DP:GQ:MIN_DP:PL 0/0:76:99:46:0,105,1575 -20 10062935 . CAAA C,CA,CAA,CAAAA, 92.84 . AS_RAW_BaseQRankSum=|0.3,1|0.0,1|1.4,1|1.3,1|NaN;AS_RAW_MQ=18000.00|4441.00|7200.00|12169.00|24907.00|0.00;AS_RAW_MQRankSum=|-1.1,1|0.0,1|-0.8,1|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|-0.4,1|-0.3,1|-1.2,1|NaN;AS_SB_TABLE=2,3|1,1|1,1|3,1|4,6|0,0;BaseQRankSum=1.336;DP=79;ExcessHet=3.0103;MLEAC=0,0,0,1,0;MLEAF=0.00,0.00,0.00,0.500,0.00;MQRankSum=-1.405;RAW_MQ=232368.00;ReadPosRankSum=-0.986 GT:AD:DP:GQ:PL:SB 0/4:5,2,2,4,10,0:23:16:130,219,1823,163,1171,1044,115,628,576,505,0,158,82,16,101,243,986,887,608,171,888:2,3,9,9 +20 10062935 . CAAA C,CA,CAA,CAAAA, 92.84 . AS_RAW_BaseQRankSum=|0.3,1|0.0,1|1.4,1|1.3,1|NaN;AS_RAW_MQ=18000.00|4441.00|7200.00|12169.00|24907.00|0.00;AS_RAW_MQRankSum=|-1.1,1|0.0,1|-0.8,1|-1.6,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|-0.4,1|-0.3,1|-1.2,1|NaN;AS_SB_TABLE=2,3|1,1|1,1|3,1|4,6|0,0;BaseQRankSum=1.336;DP=79;ExcessHet=3.0103;MLEAC=0,0,0,1,0;MLEAF=0.00,0.00,0.00,0.500,0.00;MQRankSum=-1.405;RAW_MQandDP=232368,79;ReadPosRankSum=-0.986 GT:AD:DP:GQ:PL:SB 0/4:5,2,2,4,10,0:23:16:130,219,1823,163,1171,1044,115,628,576,505,0,158,82,16,101,243,986,887,608,171,888:2,3,9,9 20 10062939 . A . . END=10062955 GT:DP:GQ:MIN_DP:PL 0/0:82:99:74:0,120,1800 20 10062956 . T . . END=10062956 GT:DP:GQ:MIN_DP:PL 0/0:69:80:69:0,80,2241 20 10062957 . C . . END=10065775 GT:DP:GQ:MIN_DP:PL 0/0:70:99:42:0,105,1575 @@ -888,15 +888,15 @@ 20 10065803 . G . . END=10065803 GT:DP:GQ:MIN_DP:PL 0/0:59:81:59:0,81,2051 20 10065804 . C . . END=10067046 GT:DP:GQ:MIN_DP:PL 0/0:72:99:48:0,102,1530 20 10067047 . A . . END=10067048 GT:DP:GQ:MIN_DP:PL 0/0:51:96:50:0,96,1440 -20 10067049 . TAAAAAAAAA T,TA,TAA, 613.73 . AS_RAW_BaseQRankSum=|0.0,1|1.0,1|-0.5,1|NaN;AS_RAW_MQ=4441.00|8882.00|14164.00|13087.00|0.00;AS_RAW_MQRankSum=|0.0,1|-0.2,1|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|-0.7,1|-1.7,1|NaN;AS_SB_TABLE=1,1|3,1|5,2|4,5|0,0;BaseQRankSum=0.177;DP=69;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.342;RAW_MQ=204256.00;ReadPosRankSum=-1.322 GT:AD:DP:GQ:PL:SB 2/3:2,4,7,9,0:22:99:651,365,925,164,381,340,135,101,0,106,443,591,394,170,627:1,1,12,8 +20 10067049 . TAAAAAAAAA T,TA,TAA, 613.73 . AS_RAW_BaseQRankSum=|0.0,1|1.0,1|-0.5,1|NaN;AS_RAW_MQ=4441.00|8882.00|14164.00|13087.00|0.00;AS_RAW_MQRankSum=|0.0,1|-0.2,1|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|-0.7,1|-1.7,1|NaN;AS_SB_TABLE=1,1|3,1|5,2|4,5|0,0;BaseQRankSum=0.177;DP=69;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.342;RAW_MQandDP=204256,69;ReadPosRankSum=-1.322 GT:AD:DP:GQ:PL:SB 2/3:2,4,7,9,0:22:99:651,365,925,164,381,340,135,101,0,106,443,591,394,170,627:1,1,12,8 20 10067059 . A . . END=10067067 GT:DP:GQ:MIN_DP:PL 0/0:57:99:50:0,99,1485 20 10067068 . A . . END=10067070 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 20 10067071 . A . . END=10067089 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,102,1530 -20 10067090 . C A, 2004.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|165948.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,28|0,0;DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=165948.00 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 +20 10067090 . C A, 2004.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|165948.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,28|0,0;DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=165948,55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 20 10067091 . T . . END=10067263 GT:DP:GQ:MIN_DP:PL 0/0:76:99:50:0,120,1800 -20 10067264 . G A, 2922.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|257282.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,35|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=257282.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 +20 10067264 . G A, 2922.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|257282.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,35|0,0;DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=257282,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 20 10067265 . C . . END=10067721 GT:DP:GQ:MIN_DP:PL 0/0:73:99:52:0,117,1800 -20 10067722 . A C, 2146.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|194400.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,29|0,0;DP=54;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=194400.00 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 +20 10067722 . A C, 2146.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|194400.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,29|0,0;DP=54;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=194400,54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 20 10067723 . C . . END=10068009 GT:DP:GQ:MIN_DP:PL 0/0:57:99:39:0,99,1485 20 10068010 . T . . END=10068014 GT:DP:GQ:MIN_DP:PL 0/0:39:90:38:0,90,1350 20 10068015 . T . . END=10068019 GT:DP:GQ:MIN_DP:PL 0/0:37:84:34:0,84,1260 @@ -914,8 +914,8 @@ 20 10068149 . T . . END=10068150 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,1125 20 10068151 . A . . END=10068155 GT:DP:GQ:MIN_DP:PL 0/0:29:63:28:0,63,945 20 10068156 . A . . END=10068157 GT:DP:GQ:MIN_DP:PL 0/0:27:57:27:0,57,855 -20 10068158 . GTGTATATATATA G, 66.73 . AS_RAW_BaseQRankSum=|-0.7,1|NaN;AS_RAW_MQ=5282.00|8882.00|0.00;AS_RAW_MQRankSum=|0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=0,3|2,2|0,0;BaseQRankSum=-0.652;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.328;RAW_MQ=93364.00;ReadPosRankSum=0.524 GT:AD:DP:GQ:PL:SB 0/1:3,4,0:7:57:104,0,57,114,69,183:0,3,2,2 -20 10068160 . GTATATATATATGTA G,*, 697.73 . AS_RAW_BaseQRankSum=|||;AS_RAW_MQ=0.00|1682.00|8882.00|0.00;AS_RAW_MQRankSum=|||;AS_RAW_ReadPosRankSum=|||;AS_SB_TABLE=0,0|0,2|2,2|0,0;DP=28;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQ=87005.00 GT:AD:DP:GQ:PL:SB 1/2:0,2,4,0:6:53:735,162,131,102,0,53,507,174,108,472:0,0,2,4 +20 10068158 . GTGTATATATATA G, 66.73 . AS_RAW_BaseQRankSum=|-0.7,1|NaN;AS_RAW_MQ=5282.00|8882.00|0.00;AS_RAW_MQRankSum=|0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=0,3|2,2|0,0;BaseQRankSum=-0.652;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.328;RAW_MQandDP=93364,29;ReadPosRankSum=0.524 GT:AD:DP:GQ:PL:SB 0/1:3,4,0:7:57:104,0,57,114,69,183:0,3,2,2 +20 10068160 . GTATATATATATGTA G,*, 697.73 . AS_RAW_BaseQRankSum=|||;AS_RAW_MQ=0.00|1682.00|8882.00|0.00;AS_RAW_MQRankSum=|||;AS_RAW_ReadPosRankSum=|||;AS_SB_TABLE=0,0|0,2|2,2|0,0;DP=28;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=87005,28 GT:AD:DP:GQ:PL:SB 1/2:0,2,4,0:6:53:735,162,131,102,0,53,507,174,108,472:0,0,2,4 20 10068175 . T . . END=10068175 GT:DP:GQ:MIN_DP:PL 0/0:20:18:20:0,18,270 20 10068176 . A . . END=10068180 GT:DP:GQ:MIN_DP:PL 0/0:19:24:17:0,24,360 20 10068181 . T . . END=10068185 GT:DP:GQ:MIN_DP:PL 0/0:16:27:16:0,27,405 @@ -960,67 +960,67 @@ 20 10068371 . G . . END=10068737 GT:DP:GQ:MIN_DP:PL 0/0:54:99:40:0,105,1575 20 10068738 . C . . END=10068738 GT:DP:GQ:MIN_DP:PL 0/0:60:98:60:0,98,2062 20 10068739 . A . . END=10068980 GT:DP:GQ:MIN_DP:PL 0/0:76:99:53:0,120,1800 -20 10068981 . G A, 2503.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|219600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,34|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=219600.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 +20 10068981 . G A, 2503.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|219600.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|27,34|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=219600,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 20 10068982 . A . . END=10070601 GT:DP:GQ:MIN_DP:PL 0/0:74:99:46:0,120,1800 -20 10070602 . T C, 2691.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|248164.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|37,35|0,0;DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=248164.00 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 +20 10070602 . T C, 2691.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|248164.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|37,35|0,0;DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=248164,72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 20 10070603 . A . . END=10070935 GT:DP:GQ:MIN_DP:PL 0/0:90:99:66:0,120,1800 -20 10070936 . T A, 3631.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|279633.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|44,37|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=279633.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 +20 10070936 . T A, 3631.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|279633.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|44,37|0,0;DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=279633,81 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 20 10070937 . A . . END=10070937 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 -20 10070938 . G GA, 3656.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|275964.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,36|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=275964.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 +20 10070938 . G GA, 3656.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|275964.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|43,36|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=275964,79 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 20 10070939 . A . . END=10071134 GT:DP:GQ:MIN_DP:PL 0/0:77:99:67:0,120,1800 -20 10071135 . C T, 3257.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|276123.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,45|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=276123.00 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 +20 10071135 . C T, 3257.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|276123.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,45|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=276123,79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 20 10071136 . T . . END=10071186 GT:DP:GQ:MIN_DP:PL 0/0:83:99:77:0,120,1800 -20 10071187 . G A, 3410.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|292441.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,52|0,0;DP=82;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=292441.00 GT:AD:DP:GQ:PL:SB 1/1:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 +20 10071187 . G A, 3410.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|292441.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|30,52|0,0;DP=82;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=292441,82 GT:AD:DP:GQ:PL:SB 1/1:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 20 10071188 . G . . END=10071889 GT:DP:GQ:MIN_DP:PL 0/0:61:99:44:0,111,1710 -20 10071890 . T C, 1974.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|202969.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|28,29|0,0;DP=57;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=202969.00 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 +20 10071890 . T C, 1974.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|202969.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|28,29|0,0;DP=57;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=202969,57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 20 10071891 . G . . END=10072504 GT:DP:GQ:MIN_DP:PL 0/0:65:99:51:0,120,1800 -20 10072505 . A G, 2099.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|230400.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,30|0,0;DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=230400.00 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 +20 10072505 . A G, 2099.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|230400.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|34,30|0,0;DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=230400,64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 20 10072506 . C . . END=10074186 GT:DP:GQ:MIN_DP:PL 0/0:71:99:40:0,102,1530 -20 10074187 . A G, 3101.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|276123.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,43|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=276123.00 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 +20 10074187 . A G, 3101.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|276123.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,43|0,0;DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=276123,79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 20 10074188 . T . . END=10074239 GT:DP:GQ:MIN_DP:PL 0/0:80:99:71:0,120,1800 -20 10074240 . T C, 3406.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|303769.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|47,38|0,0;DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=307369.00 GT:AD:DP:GQ:PL:SB 1/1:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 +20 10074240 . T C, 3406.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|303769.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|47,38|0,0;DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=307369,86 GT:AD:DP:GQ:PL:SB 1/1:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 20 10074241 . A . . END=10074667 GT:DP:GQ:MIN_DP:PL 0/0:74:99:41:0,105,1544 20 10074668 . C . . END=10074668 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 20 10074669 . A . . END=10074675 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,99,1485 20 10074676 . A . . END=10074676 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 20 10074677 . G . . END=10074715 GT:DP:GQ:MIN_DP:PL 0/0:61:99:41:0,99,1485 -20 10074716 . G A, 2400.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|227641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,39|0,0;DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=227641.00 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 +20 10074716 . G A, 2400.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|227641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|25,39|0,0;DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=227641,64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 20 10074717 . C . . END=10074805 GT:DP:GQ:MIN_DP:PL 0/0:72:99:66:0,120,1800 -20 10074806 . G A, 2817.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|250077.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|33,38|0,0;DP=71;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=250077.00 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 +20 10074806 . G A, 2817.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|250077.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|33,38|0,0;DP=71;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=250077,71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 20 10074807 . C . . END=10075042 GT:DP:GQ:MIN_DP:PL 0/0:68:99:56:0,120,1800 -20 10075043 . T C, 2405.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|216841.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,25|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=216841.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 +20 10075043 . T C, 2405.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|216841.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|36,25|0,0;DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=216841,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 20 10075044 . C . . END=10075141 GT:DP:GQ:MIN_DP:PL 0/0:55:99:51:0,120,1800 20 10075142 . G . . END=10075142 GT:DP:GQ:MIN_DP:PL 0/0:65:91:65:0,91,2199 20 10075143 . A . . END=10075167 GT:DP:GQ:MIN_DP:PL 0/0:81:99:68:0,120,1800 -20 10075168 . C T, 3612.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|309981.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,50|0,0;DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=309981.00 GT:AD:DP:GQ:PL:SB 1/1:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 +20 10075168 . C T, 3612.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|309981.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|38,50|0,0;DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=309981,88 GT:AD:DP:GQ:PL:SB 1/1:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 20 10075169 . G . . END=10075507 GT:DP:GQ:MIN_DP:PL 0/0:68:99:49:0,119,1800 -20 10075508 . GA G, 1928.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|262921.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|29,41|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=288121.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 +20 10075508 . GA G, 1928.73 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|262921.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|29,41|0,0;DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=288121,77 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 20 10075510 . A . . END=10076249 GT:DP:GQ:MIN_DP:PL 0/0:76:99:55:0,120,1800 -20 10076250 . A G, 1107.77 . AS_RAW_BaseQRankSum=|-3.4,1|NaN;AS_RAW_MQ=144000.00|134666.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=14,26|20,19|0,0;BaseQRankSum=-3.386;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.423;RAW_MQ=278666.00;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL:SB 0/1:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 +20 10076250 . A G, 1107.77 . AS_RAW_BaseQRankSum=|-3.4,1|NaN;AS_RAW_MQ=144000.00|134666.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=14,26|20,19|0,0;BaseQRankSum=-3.386;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.423;RAW_MQandDP=278666,79;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL:SB 0/1:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 20 10076251 . A . . END=10076338 GT:DP:GQ:MIN_DP:PL 0/0:70:99:62:0,120,1800 -20 10076339 . A G, 1309.77 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=115200.00|141241.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=12,20|18,22|0,0;BaseQRankSum=-0.069;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQ=256441.00;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 +20 10076339 . A G, 1309.77 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=115200.00|141241.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=12,20|18,22|0,0;BaseQRankSum=-0.069;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQandDP=256441,72;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 20 10076340 . A . . END=10076398 GT:DP:GQ:MIN_DP:PL 0/0:88:99:71:0,120,1800 -20 10076399 . G A, 1807.77 . AS_RAW_BaseQRankSum=|4.1,1|NaN;AS_RAW_MQ=158400.00|180000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=22,22|22,28|0,0;BaseQRankSum=4.154;DP=94;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=338400.00;ReadPosRankSum=-1.058 GT:AD:DP:GQ:PL:SB 0/1:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 +20 10076399 . G A, 1807.77 . AS_RAW_BaseQRankSum=|4.1,1|NaN;AS_RAW_MQ=158400.00|180000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=22,22|22,28|0,0;BaseQRankSum=4.154;DP=94;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=338400,94;ReadPosRankSum=-1.058 GT:AD:DP:GQ:PL:SB 0/1:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 20 10076400 . G . . END=10076988 GT:DP:GQ:MIN_DP:PL 0/0:73:99:51:0,120,1800 -20 10076989 . CAA C,CA,CAAA, 214.73 . AS_RAW_BaseQRankSum=|-0.4,1|-1.0,1|0.1,1|NaN;AS_RAW_MQ=25200.00|10800.00|46800.00|22441.00|0.00;AS_RAW_MQRankSum=|0.0,1|0.0,1|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|-0.8,1|-0.4,1|NaN;AS_SB_TABLE=4,3|1,2|6,7|5,2|0,0;BaseQRankSum=-0.625;DP=75;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.473;RAW_MQ=253446.00;ReadPosRankSum=-0.918 GT:AD:DP:GQ:PL:SB 2/3:7,3,13,7,0:30:41:252,271,1146,41,448,376,147,276,0,361,322,712,423,318,705:4,3,12,11 +20 10076989 . CAA C,CA,CAAA, 214.73 . AS_RAW_BaseQRankSum=|-0.4,1|-1.0,1|0.1,1|NaN;AS_RAW_MQ=25200.00|10800.00|46800.00|22441.00|0.00;AS_RAW_MQRankSum=|0.0,1|0.0,1|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|-0.8,1|-0.4,1|NaN;AS_SB_TABLE=4,3|1,2|6,7|5,2|0,0;BaseQRankSum=-0.625;DP=75;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.473;RAW_MQandDP=253446,75;ReadPosRankSum=-0.918 GT:AD:DP:GQ:PL:SB 2/3:7,3,13,7,0:30:41:252,271,1146,41,448,376,147,276,0,361,322,712,423,318,705:4,3,12,11 20 10076992 . A . . END=10077007 GT:DP:GQ:MIN_DP:PL 0/0:69:99:59:0,120,1800 -20 10077008 . T A, 0 . AS_RAW_BaseQRankSum=|-1.9,1|NaN;AS_RAW_MQ=160082.00|11641.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=18,28|4,0|0,0;BaseQRankSum=-1.806;DP=51;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.608;RAW_MQ=175323.00;ReadPosRankSum=0.805 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 +20 10077008 . T A, 0 . AS_RAW_BaseQRankSum=|-1.9,1|NaN;AS_RAW_MQ=160082.00|11641.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=18,28|4,0|0,0;BaseQRankSum=-1.806;DP=51;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.608;RAW_MQandDP=175323,51;ReadPosRankSum=0.805 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 20 10077009 . A . . END=10077009 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 -20 10077010 . G A, 0 . AS_RAW_BaseQRankSum=|-1.9,1|NaN;AS_RAW_MQ=167282.00|11641.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.9,1|NaN;AS_SB_TABLE=18,30|4,0|0,0;BaseQRankSum=-1.841;DP=53;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.658;RAW_MQ=182523.00;ReadPosRankSum=0.911 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 +20 10077010 . G A, 0 . AS_RAW_BaseQRankSum=|-1.9,1|NaN;AS_RAW_MQ=167282.00|11641.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.9,1|NaN;AS_SB_TABLE=18,30|4,0|0,0;BaseQRankSum=-1.841;DP=53;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.658;RAW_MQandDP=182523,53;ReadPosRankSum=0.911 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 20 10077011 . A . . END=10077751 GT:DP:GQ:MIN_DP:PL 0/0:69:99:44:0,102,1654 -20 10077752 . T C, 1345.77 . AS_RAW_BaseQRankSum=|-6.6,1|NaN;AS_RAW_MQ=122400.00|162000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.4,1|NaN;AS_SB_TABLE=16,18|16,29|0,0;BaseQRankSum=-6.503;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=284400.00;ReadPosRankSum=-0.352 GT:AD:DP:GQ:PL:SB 0/1:34,45,0:79:99:1374,0,1187,1477,1322,2799:16,18,16,29 +20 10077752 . T C, 1345.77 . AS_RAW_BaseQRankSum=|-6.6,1|NaN;AS_RAW_MQ=122400.00|162000.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.4,1|NaN;AS_SB_TABLE=16,18|16,29|0,0;BaseQRankSum=-6.503;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=284400,79;ReadPosRankSum=-0.352 GT:AD:DP:GQ:PL:SB 0/1:34,45,0:79:99:1374,0,1187,1477,1322,2799:16,18,16,29 20 10077753 . G . . END=10079475 GT:DP:GQ:MIN_DP:PL 0/0:70:99:46:0,108,1620 -20 10079476 . T G, 11.12 . AS_RAW_BaseQRankSum=|-4.6,1|NaN;AS_RAW_MQ=116569.00|36841.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|1.5,1|NaN;AS_SB_TABLE=6,27|11,0|0,0;BaseQRankSum=-4.570;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.826;RAW_MQ=153410.00;ReadPosRankSum=1.533 GT:AD:DP:GQ:PL:SB 0/1:33,11,0:44:39:39,0,1137,137,1166,1304:6,27,11,0 +20 10079476 . T G, 11.12 . AS_RAW_BaseQRankSum=|-4.6,1|NaN;AS_RAW_MQ=116569.00|36841.00|0.00;AS_RAW_MQRankSum=|-0.9,1|NaN;AS_RAW_ReadPosRankSum=|1.5,1|NaN;AS_SB_TABLE=6,27|11,0|0,0;BaseQRankSum=-4.570;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.826;RAW_MQandDP=153410,44;ReadPosRankSum=1.533 GT:AD:DP:GQ:PL:SB 0/1:33,11,0:44:39:39,0,1137,137,1166,1304:6,27,11,0 20 10079477 . A . . END=10079488 GT:DP:GQ:MIN_DP:PL 0/0:49:99:43:0,99,1485 20 10079489 . A . . END=10079489 GT:DP:GQ:MIN_DP:PL 0/0:47:84:47:0,84,1672 20 10079490 . A . . END=10081749 GT:DP:GQ:MIN_DP:PL 0/0:73:99:40:0,105,1571 -20 10081750 . C A, 1353.77 . AS_RAW_BaseQRankSum=|2.6,1|NaN;AS_RAW_MQ=158400.00|140400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.5,1|NaN;AS_SB_TABLE=23,21|19,20|0,0;BaseQRankSum=2.670;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=298800.00;ReadPosRankSum=-0.406 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1382,0,1525,1514,1643,3157:23,21,19,20 +20 10081750 . C A, 1353.77 . AS_RAW_BaseQRankSum=|2.6,1|NaN;AS_RAW_MQ=158400.00|140400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.5,1|NaN;AS_SB_TABLE=23,21|19,20|0,0;BaseQRankSum=2.670;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=298800,83;ReadPosRankSum=-0.406 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1382,0,1525,1514,1643,3157:23,21,19,20 20 10081751 . T . . END=10081799 GT:DP:GQ:MIN_DP:PL 0/0:77:99:68:0,120,1800 -20 10081800 . C T, 1109.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=126000.00|118800.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-2.7,1|NaN;AS_SB_TABLE=26,9|17,16|0,0;BaseQRankSum=0.241;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=244800.00;ReadPosRankSum=-2.622 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:1138,0,1222,1244,1322,2565:26,9,17,16 +20 10081800 . C T, 1109.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=126000.00|118800.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-2.7,1|NaN;AS_SB_TABLE=26,9|17,16|0,0;BaseQRankSum=0.241;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=244800,68;ReadPosRankSum=-2.622 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:1138,0,1222,1244,1322,2565:26,9,17,16 20 10081801 . A . . END=10082884 GT:DP:GQ:MIN_DP:PL 0/0:76:99:43:0,111,1665 20 10082885 . A . . END=10082885 GT:DP:GQ:MIN_DP:PL 0/0:43:83:43:0,83,1521 20 10082886 . C . . END=10082891 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,99,1485 -20 10082892 . C T, 1712.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|155641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|20,24|0,0;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=155641.00 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1741,132,0,1741,132,1741:0,0,20,24 +20 10082892 . C T, 1712.77 . AS_RAW_BaseQRankSum=||;AS_RAW_MQ=0.00|155641.00|0.00;AS_RAW_MQRankSum=||;AS_RAW_ReadPosRankSum=||;AS_SB_TABLE=0,0|20,24|0,0;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=155641,44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1741,132,0,1741,132,1741:0,0,20,24 20 10082893 . C . . END=10082901 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1485 20 10082902 . C . . END=10082903 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 20 10082904 . C . . END=10082905 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 @@ -1033,43 +1033,43 @@ 20 10082926 . C . . END=10082930 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 20 10082931 . T . . END=10082931 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1443 20 10082932 . C . . END=10085210 GT:DP:GQ:MIN_DP:PL 0/0:77:99:38:0,102,1530 -20 10085211 . A T, 1210.77 . AS_RAW_BaseQRankSum=|-1.5,1|NaN;AS_RAW_MQ=144000.00|126841.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|NaN;AS_SB_TABLE=21,19|17,19|0,0;BaseQRankSum=-1.501;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.028;RAW_MQ=270841.00;ReadPosRankSum=-1.405 GT:AD:DP:GQ:PL:SB 0/1:40,36,0:76:99:1239,0,1443,1360,1551,2911:21,19,17,19 +20 10085211 . A T, 1210.77 . AS_RAW_BaseQRankSum=|-1.5,1|NaN;AS_RAW_MQ=144000.00|126841.00|0.00;AS_RAW_MQRankSum=|-1.1,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|NaN;AS_SB_TABLE=21,19|17,19|0,0;BaseQRankSum=-1.501;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.028;RAW_MQandDP=270841,76;ReadPosRankSum=-1.405 GT:AD:DP:GQ:PL:SB 0/1:40,36,0:76:99:1239,0,1443,1360,1551,2911:21,19,17,19 20 10085212 . G . . END=10086109 GT:DP:GQ:MIN_DP:PL 0/0:77:99:54:0,120,1800 -20 10086110 . G A, 1274.77 . AS_RAW_BaseQRankSum=|-0.4,1|NaN;AS_RAW_MQ=152041.00|131282.00|0.00;AS_RAW_MQRankSum=|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=24,19|19,19|0,0;BaseQRankSum=-0.343;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.680;RAW_MQ=283323.00;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL:SB 0/1:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 +20 10086110 . G A, 1274.77 . AS_RAW_BaseQRankSum=|-0.4,1|NaN;AS_RAW_MQ=152041.00|131282.00|0.00;AS_RAW_MQRankSum=|-0.7,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=24,19|19,19|0,0;BaseQRankSum=-0.343;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.680;RAW_MQandDP=283323,81;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL:SB 0/1:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 20 10086111 . C . . END=10086282 GT:DP:GQ:MIN_DP:PL 0/0:75:99:55:0,120,1800 -20 10086283 . G T, 1025.77 . AS_RAW_BaseQRankSum=|2.3,1|NaN;AS_RAW_MQ=187200.00|115200.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=30,22|17,15|0,0;BaseQRankSum=2.304;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=302400.00;ReadPosRankSum=1.889 GT:AD:DP:GQ:PL:SB 0/1:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 +20 10086283 . G T, 1025.77 . AS_RAW_BaseQRankSum=|2.3,1|NaN;AS_RAW_MQ=187200.00|115200.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=30,22|17,15|0,0;BaseQRankSum=2.304;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=302400,84;ReadPosRankSum=1.889 GT:AD:DP:GQ:PL:SB 0/1:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 20 10086284 . G . . END=10086618 GT:DP:GQ:MIN_DP:PL 0/0:80:99:51:0,120,1800 -20 10086619 . T A, 796.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=162000.00|87241.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=18,27|9,16|0,0;BaseQRankSum=0.256;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.312;RAW_MQ=249241.00;ReadPosRankSum=-0.760 GT:AD:DP:GQ:PL:SB 0/1:45,25,0:70:99:825,0,1603,961,1679,2639:18,27,9,16 +20 10086619 . T A, 796.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=162000.00|87241.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=18,27|9,16|0,0;BaseQRankSum=0.256;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.312;RAW_MQandDP=249241,70;ReadPosRankSum=-0.760 GT:AD:DP:GQ:PL:SB 0/1:45,25,0:70:99:825,0,1603,961,1679,2639:18,27,9,16 20 10086620 . T . . END=10086852 GT:DP:GQ:MIN_DP:PL 0/0:81:99:65:0,120,1800 -20 10086853 . G A, 1002.77 . AS_RAW_BaseQRankSum=|3.9,1|NaN;AS_RAW_MQ=145369.00|112441.00|0.00;AS_RAW_MQRankSum=|-0.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=21,20|17,15|0,0;BaseQRankSum=3.915;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.177;RAW_MQ=257810.00;ReadPosRankSum=-0.100 GT:AD:DP:GQ:PL:SB 0/1:41,32,0:73:99:1031,0,1280,1154,1376,2530:21,20,17,15 +20 10086853 . G A, 1002.77 . AS_RAW_BaseQRankSum=|3.9,1|NaN;AS_RAW_MQ=145369.00|112441.00|0.00;AS_RAW_MQRankSum=|-0.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=21,20|17,15|0,0;BaseQRankSum=3.915;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.177;RAW_MQandDP=257810,73;ReadPosRankSum=-0.100 GT:AD:DP:GQ:PL:SB 0/1:41,32,0:73:99:1031,0,1280,1154,1376,2530:21,20,17,15 20 10086854 . T . . END=10086953 GT:DP:GQ:MIN_DP:PL 0/0:67:99:60:0,120,1800 -20 10086954 . G A, 1095.77 . AS_RAW_BaseQRankSum=|2.6,1|NaN;AS_RAW_MQ=122400.00|122400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=16,18|21,13|0,0;BaseQRankSum=2.606;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=244800.00;ReadPosRankSum=-0.534 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 +20 10086954 . G A, 1095.77 . AS_RAW_BaseQRankSum=|2.6,1|NaN;AS_RAW_MQ=122400.00|122400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=16,18|21,13|0,0;BaseQRankSum=2.606;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=244800,68;ReadPosRankSum=-0.534 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 20 10086955 . C . . END=10087229 GT:DP:GQ:MIN_DP:PL 0/0:70:99:55:0,120,1800 -20 10087230 . A G, 1842.77 . AS_RAW_BaseQRankSum=|-2.5,1|NaN;AS_RAW_MQ=140692.00|192169.00|0.00;AS_RAW_MQRankSum=|1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=22,20|23,31|0,0;BaseQRankSum=-2.407;DP=96;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.707;RAW_MQ=332861.00;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL:SB 0/1:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 +20 10087230 . A G, 1842.77 . AS_RAW_BaseQRankSum=|-2.5,1|NaN;AS_RAW_MQ=140692.00|192169.00|0.00;AS_RAW_MQRankSum=|1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=22,20|23,31|0,0;BaseQRankSum=-2.407;DP=96;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.707;RAW_MQandDP=332861,96;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL:SB 0/1:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 20 10087231 . C . . END=10087393 GT:DP:GQ:MIN_DP:PL 0/0:101:99:84:0,120,1800 -20 10087394 . T G, 1688.77 . AS_RAW_BaseQRankSum=|-2.4,1|NaN;AS_RAW_MQ=123241.00|176400.00|0.00;AS_RAW_MQRankSum=|1.2,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=21,14|24,25|0,0;BaseQRankSum=-2.340;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.207;RAW_MQ=299641.00;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB 0/1:35,49,0:84:99:1717,0,1186,1823,1334,3156:21,14,24,25 +20 10087394 . T G, 1688.77 . AS_RAW_BaseQRankSum=|-2.4,1|NaN;AS_RAW_MQ=123241.00|176400.00|0.00;AS_RAW_MQRankSum=|1.2,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=21,14|24,25|0,0;BaseQRankSum=-2.340;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.207;RAW_MQandDP=299641,84;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB 0/1:35,49,0:84:99:1717,0,1186,1823,1334,3156:21,14,24,25 20 10087395 . T . . END=10087753 GT:DP:GQ:MIN_DP:PL 0/0:83:99:61:0,120,1800 -20 10087754 . T G, 1347.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=133200.00|154100.00|0.00;AS_RAW_MQRankSum=|2.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=23,14|24,17|0,0;BaseQRankSum=0.355;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.193;RAW_MQ=288141.00;ReadPosRankSum=-0.551 GT:AD:DP:GQ:PL:SB 0/1:37,41,0:78:99:1376,0,1239,1488,1362,2849:23,14,24,17 +20 10087754 . T G, 1347.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=133200.00|154100.00|0.00;AS_RAW_MQRankSum=|2.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=23,14|24,17|0,0;BaseQRankSum=0.355;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.193;RAW_MQandDP=288141,79;ReadPosRankSum=-0.551 GT:AD:DP:GQ:PL:SB 0/1:37,41,0:78:99:1376,0,1239,1488,1362,2849:23,14,24,17 20 10087755 . G . . END=10087803 GT:DP:GQ:MIN_DP:PL 0/0:100:99:81:0,120,1800 -20 10087804 . C T, 1619.77 . AS_RAW_BaseQRankSum=|1.9,1|NaN;AS_RAW_MQ=178541.00|190769.00|0.00;AS_RAW_MQRankSum=|2.6,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=33,17|28,22|0,0;BaseQRankSum=1.940;DP=100;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.618;RAW_MQ=369310.00;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL:SB 0/1:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 +20 10087804 . C T, 1619.77 . AS_RAW_BaseQRankSum=|1.9,1|NaN;AS_RAW_MQ=178541.00|190769.00|0.00;AS_RAW_MQRankSum=|2.6,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=33,17|28,22|0,0;BaseQRankSum=1.940;DP=100;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.618;RAW_MQandDP=369310,100;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL:SB 0/1:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 20 10087805 . G . . END=10087819 GT:DP:GQ:MIN_DP:PL 0/0:101:99:96:0,120,1800 -20 10087820 . CAG C,CAGAG, 428.73 . AS_RAW_BaseQRankSum=|NaN|-2.0,1|NaN;AS_RAW_MQ=123769.00|0.00|63869.00|0.00;AS_RAW_MQRankSum=|NaN|0.4,1|NaN;AS_RAW_ReadPosRankSum=|NaN|-0.4,1|NaN;AS_SB_TABLE=17,18|0,0|8,10|0,0;BaseQRankSum=-1.974;DP=99;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.422;RAW_MQ=362700.00;ReadPosRankSum=-0.357 GT:AD:DP:GQ:PL:SB 0/2:35,0,18,0:53:99:466,669,2577,0,1197,1168,661,2237,1238,2189:17,18,8,10 +20 10087820 . CAG C,CAGAG, 428.73 . AS_RAW_BaseQRankSum=|NaN|-2.0,1|NaN;AS_RAW_MQ=123769.00|0.00|63869.00|0.00;AS_RAW_MQRankSum=|NaN|0.4,1|NaN;AS_RAW_ReadPosRankSum=|NaN|-0.4,1|NaN;AS_SB_TABLE=17,18|0,0|8,10|0,0;BaseQRankSum=-1.974;DP=99;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.422;RAW_MQandDP=362700,99;ReadPosRankSum=-0.357 GT:AD:DP:GQ:PL:SB 0/2:35,0,18,0:53:99:466,669,2577,0,1197,1168,661,2237,1238,2189:17,18,8,10 20 10087823 . A . . END=10087841 GT:DP:GQ:MIN_DP:PL 0/0:86:99:83:0,120,1800 20 10087842 . A . . END=10087842 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,2206 20 10087843 . A . . END=10087843 GT:DP:GQ:MIN_DP:PL 0/0:82:73:82:0,73,2973 20 10087844 . G . . END=10087844 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,2190 20 10087845 . A . . END=10088062 GT:DP:GQ:MIN_DP:PL 0/0:95:99:71:0,120,1800 -20 10088063 . C T, 1417.77 . AS_RAW_BaseQRankSum=|3.4,1|NaN;AS_RAW_MQ=171410.00|156169.00|0.00;AS_RAW_MQRankSum=|0.5,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=24,25|18,26|0,0;BaseQRankSum=3.405;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.515;RAW_MQ=327579.00;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL:SB 0/1:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 +20 10088063 . C T, 1417.77 . AS_RAW_BaseQRankSum=|3.4,1|NaN;AS_RAW_MQ=171410.00|156169.00|0.00;AS_RAW_MQRankSum=|0.5,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=24,25|18,26|0,0;BaseQRankSum=3.405;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.515;RAW_MQandDP=327579,93;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL:SB 0/1:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 20 10088064 . G . . END=10088698 GT:DP:GQ:MIN_DP:PL 0/0:87:99:60:0,120,1800 -20 10088699 . C T, 776.77 . AS_RAW_BaseQRankSum=|3.8,1|NaN;AS_RAW_MQ=127369.00|71528.00|0.00;AS_RAW_MQRankSum=|-3.2,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|NaN;AS_SB_TABLE=15,21|19,7|0,0;BaseQRankSum=3.803;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.140;RAW_MQ=199738.00;ReadPosRankSum=-1.456 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 +20 10088699 . C T, 776.77 . AS_RAW_BaseQRankSum=|3.8,1|NaN;AS_RAW_MQ=127369.00|71528.00|0.00;AS_RAW_MQRankSum=|-3.2,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|NaN;AS_SB_TABLE=15,21|19,7|0,0;BaseQRankSum=3.803;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.140;RAW_MQandDP=199738,63;ReadPosRankSum=-1.456 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 20 10088700 . G . . END=10088729 GT:DP:GQ:MIN_DP:PL 0/0:53:99:51:0,120,1800 -20 10088730 . G A, 972.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=104400.00|43958.00|0.00;AS_RAW_MQRankSum=|-4.9,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=11,18|16,7|0,0;BaseQRankSum=0.224;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.839;RAW_MQ=148358.00;ReadPosRankSum=0.581 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 +20 10088730 . G A, 972.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=104400.00|43958.00|0.00;AS_RAW_MQRankSum=|-4.9,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=11,18|16,7|0,0;BaseQRankSum=0.224;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.839;RAW_MQandDP=148358,52;ReadPosRankSum=0.581 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 20 10088731 . G . . END=10088735 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 -20 10088736 . A C, 1081.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=100800.00|48882.00|0.00;AS_RAW_MQRankSum=|-5.2,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=10,18|16,11|0,0;BaseQRankSum=0.282;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.169;RAW_MQ=149682.00;ReadPosRankSum=0.573 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 +20 10088736 . A C, 1081.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=100800.00|48882.00|0.00;AS_RAW_MQRankSum=|-5.2,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=10,18|16,11|0,0;BaseQRankSum=0.282;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.169;RAW_MQandDP=149682,55;ReadPosRankSum=0.573 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 20 10088737 . C . . END=10088746 GT:DP:GQ:MIN_DP:PL 0/0:56:99:53:0,120,1800 -20 10088747 . A G, 1111.77 . AS_RAW_BaseQRankSum=|-3.9,1|NaN;AS_RAW_MQ=90000.00|55398.00|0.00;AS_RAW_MQRankSum=|-5.0,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=10,15|18,11|0,0;BaseQRankSum=-3.877;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.907;RAW_MQ=146239.00;ReadPosRankSum=0.009 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 +20 10088747 . A G, 1111.77 . AS_RAW_BaseQRankSum=|-3.9,1|NaN;AS_RAW_MQ=90000.00|55398.00|0.00;AS_RAW_MQRankSum=|-5.0,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=10,15|18,11|0,0;BaseQRankSum=-3.877;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.907;RAW_MQandDP=146239,55;ReadPosRankSum=0.009 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 20 10088748 . G . . END=10088798 GT:DP:GQ:MIN_DP:PL 0/0:49:99:46:0,114,1710 -20 10088799 . G A, 1018.77 . AS_RAW_BaseQRankSum=|5.5,1|NaN;AS_RAW_MQ=74903.00|75137.00|0.00;AS_RAW_MQRankSum=|-2.5,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=14,8|12,19|0,0;BaseQRankSum=5.503;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.498;RAW_MQ=150040.00;ReadPosRankSum=1.075 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 +20 10088799 . G A, 1018.77 . AS_RAW_BaseQRankSum=|5.5,1|NaN;AS_RAW_MQ=74903.00|75137.00|0.00;AS_RAW_MQRankSum=|-2.5,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=14,8|12,19|0,0;BaseQRankSum=5.503;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.498;RAW_MQandDP=150040,53;ReadPosRankSum=1.075 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 20 10088800 . T . . END=10088831 GT:DP:GQ:MIN_DP:PL 0/0:54:99:50:0,113,1800 20 10088832 . G . . END=10088842 GT:DP:GQ:MIN_DP:PL 0/0:53:63:36:0,63,945 20 10088843 . C . . END=10088843 GT:DP:GQ:MIN_DP:PL 0/0:25:16:25:0,16,759 @@ -1088,13 +1088,13 @@ 20 10088866 . G . . END=10088866 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 20 10088867 . A . . END=10088870 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 20 10088871 . T . . END=10088894 GT:DP:GQ:MIN_DP:PL 0/0:39:99:33:0,99,1294 -20 10088895 . C T, 532.77 . AS_RAW_BaseQRankSum=|2.4,1|NaN;AS_RAW_MQ=74073.00|60377.00|0.00;AS_RAW_MQRankSum=|0.5,1|NaN;AS_RAW_ReadPosRankSum=|1.3,1|NaN;AS_SB_TABLE=10,13|8,10|0,0;BaseQRankSum=2.462;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.577;RAW_MQ=134450.00;ReadPosRankSum=1.301 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 +20 10088895 . C T, 532.77 . AS_RAW_BaseQRankSum=|2.4,1|NaN;AS_RAW_MQ=74073.00|60377.00|0.00;AS_RAW_MQRankSum=|0.5,1|NaN;AS_RAW_ReadPosRankSum=|1.3,1|NaN;AS_SB_TABLE=10,13|8,10|0,0;BaseQRankSum=2.462;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.577;RAW_MQandDP=134450,41;ReadPosRankSum=1.301 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 20 10088896 . G . . END=10088967 GT:DP:GQ:MIN_DP:PL 0/0:49:99:42:0,110,1709 -20 10088968 . C CAAA, 1175.73 . AS_RAW_BaseQRankSum=|0.5,1|NaN;AS_RAW_MQ=105241.00|42471.00|0.00;AS_RAW_MQRankSum=|-4.8,1|NaN;AS_RAW_ReadPosRankSum=|2.4,1|NaN;AS_SB_TABLE=16,14|14,9|0,0;BaseQRankSum=0.552;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.750;RAW_MQ=177808.00;ReadPosRankSum=2.416 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 +20 10088968 . C CAAA, 1175.73 . AS_RAW_BaseQRankSum=|0.5,1|NaN;AS_RAW_MQ=105241.00|42471.00|0.00;AS_RAW_MQRankSum=|-4.8,1|NaN;AS_RAW_ReadPosRankSum=|2.4,1|NaN;AS_SB_TABLE=16,14|14,9|0,0;BaseQRankSum=0.552;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.750;RAW_MQandDP=177808,62;ReadPosRankSum=2.416 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 20 10088969 . A . . END=10088979 GT:DP:GQ:MIN_DP:PL 0/0:71:99:70:0,120,1800 -20 10088980 . T C, 1247.77 . AS_RAW_BaseQRankSum=|-1.6,1|NaN;AS_RAW_MQ=124923.00|51430.00|0.00;AS_RAW_MQRankSum=|-5.3,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=19,18|15,16|0,0;BaseQRankSum=-1.585;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.232;RAW_MQ=176353.00;ReadPosRankSum=1.288 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 +20 10088980 . T C, 1247.77 . AS_RAW_BaseQRankSum=|-1.6,1|NaN;AS_RAW_MQ=124923.00|51430.00|0.00;AS_RAW_MQRankSum=|-5.3,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=19,18|15,16|0,0;BaseQRankSum=-1.585;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.232;RAW_MQandDP=176353,68;ReadPosRankSum=1.288 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 20 10088981 . A . . END=10088984 GT:DP:GQ:MIN_DP:PL 0/0:71:99:69:0,120,1800 -20 10088985 . T C, 1178.77 . AS_RAW_BaseQRankSum=|-0.2,1|NaN;AS_RAW_MQ=138965.00|52799.00|0.00;AS_RAW_MQRankSum=|-5.3,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=22,20|15,17|0,0;BaseQRankSum=-0.192;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.248;RAW_MQ=191764.00;ReadPosRankSum=1.228 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 +20 10088985 . T C, 1178.77 . AS_RAW_BaseQRankSum=|-0.2,1|NaN;AS_RAW_MQ=138965.00|52799.00|0.00;AS_RAW_MQRankSum=|-5.3,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=22,20|15,17|0,0;BaseQRankSum=-0.192;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.248;RAW_MQandDP=191764,74;ReadPosRankSum=1.228 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 20 10088986 . A . . END=10088989 GT:DP:GQ:MIN_DP:PL 0/0:82:99:81:0,120,1800 20 10088990 . A . . END=10088990 GT:DP:GQ:MIN_DP:PL 0/0:84:7:84:0,7,2771 20 10088991 . C . . END=10088991 GT:DP:GQ:MIN_DP:PL 0/0:81:95:81:0,95,2703 @@ -1108,69 +1108,69 @@ 20 10089038 . A . . END=10089042 GT:DP:GQ:MIN_DP:PL 0/0:83:99:81:0,120,1800 20 10089043 . T . . END=10089043 GT:DP:GQ:MIN_DP:PL 0/0:76:79:76:0,79,2231 20 10089044 . G . . END=10089440 GT:DP:GQ:MIN_DP:PL 0/0:82:99:74:0,120,1800 -20 10089441 . A G, 1179.77 . AS_RAW_BaseQRankSum=|-4.9,1|NaN;AS_RAW_MQ=133200.00|137641.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=19,18|14,25|0,0;BaseQRankSum=-4.885;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.948;RAW_MQ=270841.00;ReadPosRankSum=-0.156 GT:AD:DP:GQ:PL:SB 0/1:37,39,0:76:99:1208,0,1313,1319,1430,2749:19,18,14,25 +20 10089441 . A G, 1179.77 . AS_RAW_BaseQRankSum=|-4.9,1|NaN;AS_RAW_MQ=133200.00|137641.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=19,18|14,25|0,0;BaseQRankSum=-4.885;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.948;RAW_MQandDP=270841,76;ReadPosRankSum=-0.156 GT:AD:DP:GQ:PL:SB 0/1:37,39,0:76:99:1208,0,1313,1319,1430,2749:19,18,14,25 20 10089442 . G . . END=10089524 GT:DP:GQ:MIN_DP:PL 0/0:81:99:74:0,120,1800 -20 10089525 . C T, 1548.77 . AS_RAW_BaseQRankSum=|5.8,1|NaN;AS_RAW_MQ=131810.00|154800.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=22,16|20,23|0,0;BaseQRankSum=5.859;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.531;RAW_MQ=286610.00;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL:SB 0/1:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 +20 10089525 . C T, 1548.77 . AS_RAW_BaseQRankSum=|5.8,1|NaN;AS_RAW_MQ=131810.00|154800.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|0.8,1|NaN;AS_SB_TABLE=22,16|20,23|0,0;BaseQRankSum=5.859;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.531;RAW_MQandDP=286610,81;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL:SB 0/1:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 20 10089526 . G . . END=10090288 GT:DP:GQ:MIN_DP:PL 0/0:72:99:55:0,111,1800 -20 10090289 . CAA C,CA, 384.73 . AS_RAW_BaseQRankSum=|0.6,1|0.3,1|NaN;AS_RAW_MQ=50400.00|14400.00|75900.00|0.00;AS_RAW_MQRankSum=|0.0,1|1.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|0.5,1|NaN;AS_SB_TABLE=7,7|3,1|8,12|0,0;BaseQRankSum=0.441;DP=80;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=1.393;RAW_MQ=287682.00;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL:SB 0/2:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 +20 10090289 . CAA C,CA, 384.73 . AS_RAW_BaseQRankSum=|0.6,1|0.3,1|NaN;AS_RAW_MQ=50400.00|14400.00|75900.00|0.00;AS_RAW_MQRankSum=|0.0,1|1.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.5,1|0.5,1|NaN;AS_SB_TABLE=7,7|3,1|8,12|0,0;BaseQRankSum=0.441;DP=80;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=1.393;RAW_MQandDP=287682,80;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL:SB 0/2:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 20 10090292 . A . . END=10090763 GT:DP:GQ:MIN_DP:PL 0/0:75:99:61:0,120,1800 -20 10090764 . A G, 840.77 . AS_RAW_BaseQRankSum=|-2.7,1|NaN;AS_RAW_MQ=122400.00|104400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=12,22|14,15|0,0;BaseQRankSum=-2.659;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=226800.00;ReadPosRankSum=1.207 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 +20 10090764 . A G, 840.77 . AS_RAW_BaseQRankSum=|-2.7,1|NaN;AS_RAW_MQ=122400.00|104400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=12,22|14,15|0,0;BaseQRankSum=-2.659;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=226800,63;ReadPosRankSum=1.207 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 20 10090765 . A . . END=10090969 GT:DP:GQ:MIN_DP:PL 0/0:75:99:65:0,120,1800 -20 10090970 . T C, 1257.77 . AS_RAW_BaseQRankSum=|-0.5,1|NaN;AS_RAW_MQ=114338.00|129600.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=20,13|20,16|0,0;BaseQRankSum=-0.484;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.509;RAW_MQ=243938.00;ReadPosRankSum=-0.072 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1286,0,1092,1384,1201,2585:20,13,20,16 +20 10090970 . T C, 1257.77 . AS_RAW_BaseQRankSum=|-0.5,1|NaN;AS_RAW_MQ=114338.00|129600.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=20,13|20,16|0,0;BaseQRankSum=-0.484;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.509;RAW_MQandDP=243938,69;ReadPosRankSum=-0.072 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1286,0,1092,1384,1201,2585:20,13,20,16 20 10090971 . C . . END=10091213 GT:DP:GQ:MIN_DP:PL 0/0:61:99:49:0,120,1800 -20 10091214 . C T, 1249.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=118800.00|130969.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=11,22|13,24|0,0;BaseQRankSum=0.361;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.916;RAW_MQ=249769.00;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:33,37,0:70:99:1278,0,1110,1377,1222,2599:11,22,13,24 +20 10091214 . C T, 1249.77 . AS_RAW_BaseQRankSum=|0.3,1|NaN;AS_RAW_MQ=118800.00|130969.00|0.00;AS_RAW_MQRankSum=|-1.0,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=11,22|13,24|0,0;BaseQRankSum=0.361;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.916;RAW_MQandDP=249769,70;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:33,37,0:70:99:1278,0,1110,1377,1222,2599:11,22,13,24 20 10091215 . C . . END=10092414 GT:DP:GQ:MIN_DP:PL 0/0:69:99:46:0,120,1800 -20 10092415 . A G, 1635.77 . AS_RAW_BaseQRankSum=|-6.8,1|NaN;AS_RAW_MQ=187200.00|176400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=27,25|24,25|0,0;BaseQRankSum=-6.731;DP=101;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=363600.00;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:52,49,0:101:99:1664,0,1902,1820,2049,3870:27,25,24,25 +20 10092415 . A G, 1635.77 . AS_RAW_BaseQRankSum=|-6.8,1|NaN;AS_RAW_MQ=187200.00|176400.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=27,25|24,25|0,0;BaseQRankSum=-6.731;DP=101;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=363600,101;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:52,49,0:101:99:1664,0,1902,1820,2049,3870:27,25,24,25 20 10092416 . G . . END=10092926 GT:DP:GQ:MIN_DP:PL 0/0:80:99:60:0,120,1800 -20 10092927 . G T, 106.77 . AS_RAW_BaseQRankSum=|-2.6,1|NaN;AS_RAW_MQ=212400.00|41282.00|0.00;AS_RAW_MQRankSum=|-3.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=43,16|0,13|0,0;BaseQRankSum=-2.507;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.009;RAW_MQ=257282.00;ReadPosRankSum=-0.220 GT:AD:DP:GQ:PL:SB 0/1:59,13,0:72:99:135,0,1864,310,1901,2211:43,16,0,13 +20 10092927 . G T, 106.77 . AS_RAW_BaseQRankSum=|-2.6,1|NaN;AS_RAW_MQ=212400.00|41282.00|0.00;AS_RAW_MQRankSum=|-3.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=43,16|0,13|0,0;BaseQRankSum=-2.507;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.009;RAW_MQandDP=257282,73;ReadPosRankSum=-0.220 GT:AD:DP:GQ:PL:SB 0/1:59,13,0:72:99:135,0,1864,310,1901,2211:43,16,0,13 20 10092928 . T . . END=10093567 GT:DP:GQ:MIN_DP:PL 0/0:79:99:57:0,120,1800 -20 10093568 . GTT G,GT,GTTT, 326.73 . AS_RAW_BaseQRankSum=|-1.7,1|1.1,1|0.2,1|NaN;AS_RAW_MQ=61200.00|11641.00|62869.00|14400.00|0.00;AS_RAW_MQRankSum=|-2.0,1|1.0,1|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.6,1|0.6,1|1.1,1|NaN;AS_SB_TABLE=7,10|2,2|7,10|1,3|0,0;BaseQRankSum=0.426;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=0.410;RAW_MQ=203561.00;ReadPosRankSum=1.257 GT:AD:DP:GQ:PL:SB 0/2:17,4,17,4,0:42:99:364,329,1122,0,430,386,377,710,293,909,431,838,449,780,885:7,10,10,15 +20 10093568 . GTT G,GT,GTTT, 326.73 . AS_RAW_BaseQRankSum=|-1.7,1|1.1,1|0.2,1|NaN;AS_RAW_MQ=61200.00|11641.00|62869.00|14400.00|0.00;AS_RAW_MQRankSum=|-2.0,1|1.0,1|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.6,1|0.6,1|1.1,1|NaN;AS_SB_TABLE=7,10|2,2|7,10|1,3|0,0;BaseQRankSum=0.426;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=0.410;RAW_MQandDP=203561,59;ReadPosRankSum=1.257 GT:AD:DP:GQ:PL:SB 0/2:17,4,17,4,0:42:99:364,329,1122,0,430,386,377,710,293,909,431,838,449,780,885:7,10,10,15 20 10093571 . T . . END=10093922 GT:DP:GQ:MIN_DP:PL 0/0:62:99:51:0,99,1485 -20 10093923 . T A, 1075.77 . AS_RAW_BaseQRankSum=|-0.7,1|NaN;AS_RAW_MQ=122419.00|112285.00|0.00;AS_RAW_MQRankSum=|0.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.6,1|NaN;AS_SB_TABLE=18,17|15,17|0,0;BaseQRankSum=-0.667;DP=67;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.358;RAW_MQ=234704.00;ReadPosRankSum=-1.583 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:1104,0,1257,1209,1353,2563:18,17,15,17 +20 10093923 . T A, 1075.77 . AS_RAW_BaseQRankSum=|-0.7,1|NaN;AS_RAW_MQ=122419.00|112285.00|0.00;AS_RAW_MQRankSum=|0.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.6,1|NaN;AS_SB_TABLE=18,17|15,17|0,0;BaseQRankSum=-0.667;DP=67;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.358;RAW_MQandDP=234704,67;ReadPosRankSum=-1.583 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:1104,0,1257,1209,1353,2563:18,17,15,17 20 10093924 . G . . END=10094250 GT:DP:GQ:MIN_DP:PL 0/0:66:99:53:0,120,1800 -20 10094251 . T A, 1270.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=93600.00|129600.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=10,16|23,13|0,0;BaseQRankSum=0.251;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=223200.00;ReadPosRankSum=1.806 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:1299,0,781,1376,889,2265:10,16,23,13 +20 10094251 . T A, 1270.77 . AS_RAW_BaseQRankSum=|0.2,1|NaN;AS_RAW_MQ=93600.00|129600.00|0.00;AS_RAW_MQRankSum=|0.0,1|NaN;AS_RAW_ReadPosRankSum=|1.8,1|NaN;AS_SB_TABLE=10,16|23,13|0,0;BaseQRankSum=0.251;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=223200,62;ReadPosRankSum=1.806 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:1299,0,781,1376,889,2265:10,16,23,13 20 10094252 . C . . END=10094581 GT:DP:GQ:MIN_DP:PL 0/0:68:99:46:0,117,1755 -20 10094582 . A G, 923.77 . AS_RAW_BaseQRankSum=|-1.4,1|NaN;AS_RAW_MQ=135410.00|108000.00|0.00;AS_RAW_MQRankSum=|1.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=20,19|16,14|0,0;BaseQRankSum=-1.388;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.270;RAW_MQ=243410.00;ReadPosRankSum=-0.018 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:952,0,1350,1070,1440,2510:20,19,16,14 +20 10094582 . A G, 923.77 . AS_RAW_BaseQRankSum=|-1.4,1|NaN;AS_RAW_MQ=135410.00|108000.00|0.00;AS_RAW_MQRankSum=|1.2,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=20,19|16,14|0,0;BaseQRankSum=-1.388;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.270;RAW_MQandDP=243410,69;ReadPosRankSum=-0.018 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:952,0,1350,1070,1440,2510:20,19,16,14 20 10094583 . T . . END=10094773 GT:DP:GQ:MIN_DP:PL 0/0:78:99:67:0,120,1800 -20 10094774 . C T, 1036.77 . AS_RAW_BaseQRankSum=|-0.8,1|NaN;AS_RAW_MQ=141241.00|126000.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=24,16|21,14|0,0;BaseQRankSum=-0.784;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.962;RAW_MQ=267241.00;ReadPosRankSum=0.197 GT:AD:DP:GQ:PL:SB 0/1:40,35,0:75:99:1065,0,1282,1185,1385,2570:24,16,21,14 +20 10094774 . C T, 1036.77 . AS_RAW_BaseQRankSum=|-0.8,1|NaN;AS_RAW_MQ=141241.00|126000.00|0.00;AS_RAW_MQRankSum=|0.9,1|NaN;AS_RAW_ReadPosRankSum=|0.1,1|NaN;AS_SB_TABLE=24,16|21,14|0,0;BaseQRankSum=-0.784;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.962;RAW_MQandDP=267241,75;ReadPosRankSum=0.197 GT:AD:DP:GQ:PL:SB 0/1:40,35,0:75:99:1065,0,1282,1185,1385,2570:24,16,21,14 20 10094775 . A . . END=10095431 GT:DP:GQ:MIN_DP:PL 0/0:77:99:63:0,120,1800 -20 10095432 . GTGATGATGA G, 839.73 . AS_RAW_BaseQRankSum=|1.2,1|NaN;AS_RAW_MQ=97200.00|35579.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=16,11|12,11|0,0;BaseQRankSum=1.265;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.431;RAW_MQ=227748.00;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 +20 10095432 . GTGATGATGA G, 839.73 . AS_RAW_BaseQRankSum=|1.2,1|NaN;AS_RAW_MQ=97200.00|35579.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=16,11|12,11|0,0;BaseQRankSum=1.265;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.431;RAW_MQandDP=227748,77;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 20 10095442 . T . . END=10095740 GT:DP:GQ:MIN_DP:PL 0/0:80:99:64:0,120,1800 -20 10095741 . A G, 1075.77 . AS_RAW_BaseQRankSum=|-0.6,1|NaN;AS_RAW_MQ=126841.00|103087.00|0.00;AS_RAW_MQRankSum=|-2.4,1|NaN;AS_RAW_ReadPosRankSum=|-0.5,1|NaN;AS_SB_TABLE=14,22|18,16|0,0;BaseQRankSum=-0.534;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.313;RAW_MQ=233528.00;ReadPosRankSum=-0.500 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:1104,0,1233,1213,1335,2547:14,22,18,16 +20 10095741 . A G, 1075.77 . AS_RAW_BaseQRankSum=|-0.6,1|NaN;AS_RAW_MQ=126841.00|103087.00|0.00;AS_RAW_MQRankSum=|-2.4,1|NaN;AS_RAW_ReadPosRankSum=|-0.5,1|NaN;AS_SB_TABLE=14,22|18,16|0,0;BaseQRankSum=-0.534;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.313;RAW_MQandDP=233528,71;ReadPosRankSum=-0.500 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:1104,0,1233,1213,1335,2547:14,22,18,16 20 10095742 . G . . END=10096292 GT:DP:GQ:MIN_DP:PL 0/0:73:99:63:0,120,1800 -20 10096293 . C T, 1355.77 . AS_RAW_BaseQRankSum=|4.6,1|NaN;AS_RAW_MQ=123220.00|134041.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.2,1|NaN;AS_SB_TABLE=21,16|21,17|0,0;BaseQRankSum=4.664;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.397;RAW_MQ=257261.00;ReadPosRankSum=-1.135 GT:AD:DP:GQ:PL:SB 0/1:37,38,0:75:99:1384,0,1258,1495,1372,2867:21,16,21,17 +20 10096293 . C T, 1355.77 . AS_RAW_BaseQRankSum=|4.6,1|NaN;AS_RAW_MQ=123220.00|134041.00|0.00;AS_RAW_MQRankSum=|1.3,1|NaN;AS_RAW_ReadPosRankSum=|-1.2,1|NaN;AS_SB_TABLE=21,16|21,17|0,0;BaseQRankSum=4.664;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.397;RAW_MQandDP=257261,75;ReadPosRankSum=-1.135 GT:AD:DP:GQ:PL:SB 0/1:37,38,0:75:99:1384,0,1258,1495,1372,2867:21,16,21,17 20 10096294 . T . . END=10096595 GT:DP:GQ:MIN_DP:PL 0/0:68:99:57:0,120,1800 -20 10096596 . C T, 1562.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=136779.00|163682.00|0.00;AS_RAW_MQRankSum=|0.6,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=19,21|23,24|0,0;BaseQRankSum=2.728;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.612;RAW_MQ=300461.00;ReadPosRankSum=-0.170 GT:AD:DP:GQ:PL:SB 0/1:40,47,0:87:99:1591,0,1273,1711,1414,3125:19,21,23,24 +20 10096596 . C T, 1562.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=136779.00|163682.00|0.00;AS_RAW_MQRankSum=|0.6,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=19,21|23,24|0,0;BaseQRankSum=2.728;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.612;RAW_MQandDP=300461,87;ReadPosRankSum=-0.170 GT:AD:DP:GQ:PL:SB 0/1:40,47,0:87:99:1591,0,1273,1711,1414,3125:19,21,23,24 20 10096597 . T . . END=10096767 GT:DP:GQ:MIN_DP:PL 0/0:90:99:75:0,120,1800 -20 10096768 . A C, 1682.77 . AS_RAW_BaseQRankSum=|-2.8,1|NaN;AS_RAW_MQ=151200.00|168123.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=25,17|24,25|0,0;BaseQRankSum=-2.764;DP=91;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.609;RAW_MQ=319323.00;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL:SB 0/1:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 +20 10096768 . A C, 1682.77 . AS_RAW_BaseQRankSum=|-2.8,1|NaN;AS_RAW_MQ=151200.00|168123.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=25,17|24,25|0,0;BaseQRankSum=-2.764;DP=91;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.609;RAW_MQandDP=319323,91;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL:SB 0/1:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 20 10096769 . A . . END=10096898 GT:DP:GQ:MIN_DP:PL 0/0:78:99:65:0,120,1800 -20 10096899 . G T, 1614.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=140400.00|139538.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=19,20|12,28|0,0;BaseQRankSum=2.755;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.387;RAW_MQ=279938.00;ReadPosRankSum=0.422 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 +20 10096899 . G T, 1614.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=140400.00|139538.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=19,20|12,28|0,0;BaseQRankSum=2.755;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.387;RAW_MQandDP=279938,79;ReadPosRankSum=0.422 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 20 10096900 . G . . END=10096904 GT:DP:GQ:MIN_DP:PL 0/0:82:99:78:0,120,1800 -20 10096905 . TA T, 1600.73 . AS_RAW_BaseQRankSum=|-0.8,1|NaN;AS_RAW_MQ=144000.00|147579.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=20,20|13,30|0,0;BaseQRankSum=-0.755;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.677;RAW_MQ=291579.00;ReadPosRankSum=0.461 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 +20 10096905 . TA T, 1600.73 . AS_RAW_BaseQRankSum=|-0.8,1|NaN;AS_RAW_MQ=144000.00|147579.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=20,20|13,30|0,0;BaseQRankSum=-0.755;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.677;RAW_MQandDP=291579,83;ReadPosRankSum=0.461 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 20 10096907 . A . . END=10096932 GT:DP:GQ:MIN_DP:PL 0/0:84:99:82:0,120,1800 -20 10096933 . G C, 1511.77 . AS_RAW_BaseQRankSum=|-2.0,1|NaN;AS_RAW_MQ=158400.00|140379.00|0.00;AS_RAW_MQRankSum=|-1.9,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=28,16|13,28|0,0;BaseQRankSum=-1.914;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.802;RAW_MQ=298779.00;ReadPosRankSum=0.334 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 +20 10096933 . G C, 1511.77 . AS_RAW_BaseQRankSum=|-2.0,1|NaN;AS_RAW_MQ=158400.00|140379.00|0.00;AS_RAW_MQRankSum=|-1.9,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=28,16|13,28|0,0;BaseQRankSum=-1.914;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.802;RAW_MQandDP=298779,85;ReadPosRankSum=0.334 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 20 10096934 . T . . END=10096957 GT:DP:GQ:MIN_DP:PL 0/0:90:99:86:0,120,1800 -20 10096958 . G A, 1766.77 . AS_RAW_BaseQRankSum=|2.8,1|NaN;AS_RAW_MQ=162000.00|161979.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.9,1|NaN;AS_SB_TABLE=27,18|16,31|0,0;BaseQRankSum=2.839;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.701;RAW_MQ=323979.00;ReadPosRankSum=-1.833 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 +20 10096958 . G A, 1766.77 . AS_RAW_BaseQRankSum=|2.8,1|NaN;AS_RAW_MQ=162000.00|161979.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.9,1|NaN;AS_SB_TABLE=27,18|16,31|0,0;BaseQRankSum=2.839;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.701;RAW_MQandDP=323979,92;ReadPosRankSum=-1.833 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 20 10096959 . G . . END=10097074 GT:DP:GQ:MIN_DP:PL 0/0:92:99:84:0,120,1800 -20 10097075 . T G, 1445.77 . AS_RAW_BaseQRankSum=|-2.6,1|NaN;AS_RAW_MQ=159700.00|155928.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=18,26|26,22|0,0;BaseQRankSum=-2.533;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.389;RAW_MQ=315628.00;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 +20 10097075 . T G, 1445.77 . AS_RAW_BaseQRankSum=|-2.6,1|NaN;AS_RAW_MQ=159700.00|155928.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=18,26|26,22|0,0;BaseQRankSum=-2.533;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.389;RAW_MQandDP=315628,92;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 20 10097076 . A . . END=10097100 GT:DP:GQ:MIN_DP:PL 0/0:91:99:77:0,120,1800 -20 10097101 . C CTTT,CTTTT, 1091.73 . AS_RAW_BaseQRankSum=|-0.9,1|-1.2,1|NaN;AS_RAW_MQ=121504.00|76887.00|6803.00|0.00;AS_RAW_MQRankSum=|-1.8,1|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|2.7,1|-1.4,1|NaN;AS_SB_TABLE=22,12|12,14|3,1|0,0;BaseQRankSum=-1.134;DP=76;ExcessHet=3.0103;MLEAC=1,0,0;MLEAF=0.500,0.00,0.00;MQRankSum=-2.428;RAW_MQ=252294.00;ReadPosRankSum=2.086 GT:AD:DP:GQ:PL:SB 0/1:34,26,4,0:64:99:1129,0,1306,558,1324,2012,982,1430,2052,2377:22,12,15,15 +20 10097101 . C CTTT,CTTTT, 1091.73 . AS_RAW_BaseQRankSum=|-0.9,1|-1.2,1|NaN;AS_RAW_MQ=121504.00|76887.00|6803.00|0.00;AS_RAW_MQRankSum=|-1.8,1|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|2.7,1|-1.4,1|NaN;AS_SB_TABLE=22,12|12,14|3,1|0,0;BaseQRankSum=-1.134;DP=76;ExcessHet=3.0103;MLEAC=1,0,0;MLEAF=0.500,0.00,0.00;MQRankSum=-2.428;RAW_MQandDP=252294,76;ReadPosRankSum=2.086 GT:AD:DP:GQ:PL:SB 0/1:34,26,4,0:64:99:1129,0,1306,558,1324,2012,982,1430,2052,2377:22,12,15,15 20 10097102 . T . . END=10097435 GT:DP:GQ:MIN_DP:PL 0/0:70:99:60:0,120,1800 -20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, 1054.73 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=204882.00|57261.00|0.00;AS_RAW_MQRankSum=|-6.5,1|NaN;AS_RAW_ReadPosRankSum=|-3.1,1|NaN;AS_SB_TABLE=23,34|11,21|0,0;BaseQRankSum=1.820;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.464;RAW_MQ=262143.00;ReadPosRankSum=-3.097 GT:AD:DP:GQ:PL:SB 0/1:57,32,0:89:99:1092,0,2241,1263,2338,3601:23,34,11,21 -20 10097437 . TTTTC *,T, 2089.73 . AS_RAW_BaseQRankSum=|||;AS_RAW_MQ=0.00|57261.00|84469.00|0.00;AS_RAW_MQRankSum=|||;AS_RAW_ReadPosRankSum=|||;AS_SB_TABLE=0,0|11,21|5,18|0,0;DP=76;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQ=217330.00 GT:AD:DP:GQ:PL:SB 1/2:0,32,23,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642:0,0,16,39 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, 1054.73 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=204882.00|57261.00|0.00;AS_RAW_MQRankSum=|-6.5,1|NaN;AS_RAW_ReadPosRankSum=|-3.1,1|NaN;AS_SB_TABLE=23,34|11,21|0,0;BaseQRankSum=1.820;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.464;RAW_MQandDP=262143,89;ReadPosRankSum=-3.097 GT:AD:DP:GQ:PL:SB 0/1:57,32,0:89:99:1092,0,2241,1263,2338,3601:23,34,11,21 +20 10097437 . TTTTC *,T, 2089.73 . AS_RAW_BaseQRankSum=|||;AS_RAW_MQ=0.00|57261.00|84469.00|0.00;AS_RAW_MQRankSum=|||;AS_RAW_ReadPosRankSum=|||;AS_SB_TABLE=0,0|11,21|5,18|0,0;DP=76;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=217330,76 GT:AD:DP:GQ:PL:SB 1/2:0,32,23,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642:0,0,16,39 20 10097442 . T . . END=10097475 GT:DP:GQ:MIN_DP:PL 0/0:78:0:63:0,0,557 20 10097476 . T . . END=10097476 GT:DP:GQ:MIN_DP:PL 0/0:66:11:66:0,11,2255 20 10097477 . C . . END=10097625 GT:DP:GQ:MIN_DP:PL 0/0:69:99:45:0,109,1710 -20 10097626 . C A, 626.77 . AS_RAW_BaseQRankSum=|1.0,1|NaN;AS_RAW_MQ=98041.00|64779.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=8,20|8,12|0,0;BaseQRankSum=1.085;DP=48;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.331;RAW_MQ=162820.00;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:655,0,957,739,1017,1757:8,20,8,12 +20 10097626 . C A, 626.77 . AS_RAW_BaseQRankSum=|1.0,1|NaN;AS_RAW_MQ=98041.00|64779.00|0.00;AS_RAW_MQRankSum=|-1.4,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=8,20|8,12|0,0;BaseQRankSum=1.085;DP=48;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.331;RAW_MQandDP=162820,48;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:655,0,957,739,1017,1757:8,20,8,12 20 10097627 . T . . END=10097788 GT:DP:GQ:MIN_DP:PL 0/0:60:99:49:0,120,1800 -20 10097789 . T C, 688.77 . AS_RAW_BaseQRankSum=|-1.2,1|NaN;AS_RAW_MQ=122400.00|69005.00|0.00;AS_RAW_MQRankSum=|-2.9,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=14,20|13,10|0,0;BaseQRankSum=-1.157;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.805;RAW_MQ=191405.00;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 +20 10097789 . T C, 688.77 . AS_RAW_BaseQRankSum=|-1.2,1|NaN;AS_RAW_MQ=122400.00|69005.00|0.00;AS_RAW_MQRankSum=|-2.9,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=14,20|13,10|0,0;BaseQRankSum=-1.157;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.805;RAW_MQandDP=191405,57;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 20 10097790 . C . . END=10097915 GT:DP:GQ:MIN_DP:PL 0/0:69:99:42:0,108,1620 20 10097916 . T . . END=10097916 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1449 20 10097917 . C . . END=10097919 GT:DP:GQ:MIN_DP:PL 0/0:40:96:39:0,96,1440 20 10097920 . G . . END=10097920 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 20 10097921 . A . . END=10097926 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 20 10097927 . T . . END=10097927 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 -20 10097928 . G A, 570.77 . AS_RAW_BaseQRankSum=|-1.3,1|NaN;AS_RAW_MQ=61200.00|60123.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=9,8|8,11|0,0;BaseQRankSum=-1.203;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.654;RAW_MQ=121323.00;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL:SB 0/1:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 +20 10097928 . G A, 570.77 . AS_RAW_BaseQRankSum=|-1.3,1|NaN;AS_RAW_MQ=61200.00|60123.00|0.00;AS_RAW_MQRankSum=|-1.7,1|NaN;AS_RAW_ReadPosRankSum=|-0.1,1|NaN;AS_SB_TABLE=9,8|8,11|0,0;BaseQRankSum=-1.203;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.654;RAW_MQandDP=121323,36;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL:SB 0/1:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 20 10097929 . A . . END=10097930 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 20 10097931 . C . . END=10097932 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 20 10097933 . C . . END=10097935 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 @@ -1197,7 +1197,7 @@ 20 10098097 . A . . END=10098102 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 20 10098103 . A . . END=10098108 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 20 10098109 . A . . END=10098109 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 -20 10098110 . G C, 586.77 . AS_RAW_BaseQRankSum=|2.5,1|NaN;AS_RAW_MQ=68400.00|55682.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=0,19|2,15|0,0;BaseQRankSum=2.510;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.477;RAW_MQ=124082.00;ReadPosRankSum=-0.730 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 +20 10098110 . G C, 586.77 . AS_RAW_BaseQRankSum=|2.5,1|NaN;AS_RAW_MQ=68400.00|55682.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=0,19|2,15|0,0;BaseQRankSum=2.510;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.477;RAW_MQandDP=124082,36;ReadPosRankSum=-0.730 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 20 10098111 . T . . END=10098112 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 20 10098113 . T . . END=10098113 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 20 10098114 . C . . END=10098119 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 @@ -1205,7 +1205,7 @@ 20 10098126 . A . . END=10098128 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 20 10098129 . T . . END=10098132 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 20 10098133 . T . . END=10098134 GT:DP:GQ:MIN_DP:PL 0/0:38:91:37:0,91,1395 -20 10098135 . C A, 471.77 . AS_RAW_BaseQRankSum=|-1.2,1|NaN;AS_RAW_MQ=83641.00|51541.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=0,24|1,13|0,0;BaseQRankSum=-1.155;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.546;RAW_MQ=135182.00;ReadPosRankSum=-0.591 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 +20 10098135 . C A, 471.77 . AS_RAW_BaseQRankSum=|-1.2,1|NaN;AS_RAW_MQ=83641.00|51541.00|0.00;AS_RAW_MQRankSum=|1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.6,1|NaN;AS_SB_TABLE=0,24|1,13|0,0;BaseQRankSum=-1.155;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.546;RAW_MQandDP=135182,38;ReadPosRankSum=-0.591 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 20 10098136 . A . . END=10098147 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 20 10098148 . T . . END=10098148 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 20 10098149 . T . . END=10098150 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 @@ -1215,21 +1215,21 @@ 20 10098198 . A . . END=10098203 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 20 10098204 . G . . END=10098216 GT:DP:GQ:MIN_DP:PL 0/0:24:60:21:0,60,900 20 10098217 . T . . END=10098218 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 -20 10098219 . TATATATA T, 295.73 . AS_RAW_BaseQRankSum=|3.1,1|NaN;AS_RAW_MQ=40441.00|25264.00|0.00;AS_RAW_MQRankSum=|-0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=0,12|0,9|0,0;BaseQRankSum=3.147;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.205;RAW_MQ=65705.00;ReadPosRankSum=0.427 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 +20 10098219 . TATATATA T, 295.73 . AS_RAW_BaseQRankSum=|3.1,1|NaN;AS_RAW_MQ=40441.00|25264.00|0.00;AS_RAW_MQRankSum=|-0.3,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=0,12|0,9|0,0;BaseQRankSum=3.147;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.205;RAW_MQandDP=65705,21;ReadPosRankSum=0.427 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 20 10098227 . T . . END=10098228 GT:DP:GQ:MIN_DP:PL 0/0:18:30:18:0,30,450 20 10098229 . A . . END=10098236 GT:DP:GQ:MIN_DP:PL 0/0:17:21:13:0,21,315 -20 10098237 . A T, 244.77 . AS_RAW_BaseQRankSum=|0.0,1|NaN;AS_RAW_MQ=21600.00|15464.00|0.00;AS_RAW_MQRankSum=|-1.8,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=0,6|0,7|0,0;BaseQRankSum=0.006;DP=13;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.742;RAW_MQ=37064.00;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 +20 10098237 . A T, 244.77 . AS_RAW_BaseQRankSum=|0.0,1|NaN;AS_RAW_MQ=21600.00|15464.00|0.00;AS_RAW_MQRankSum=|-1.8,1|NaN;AS_RAW_ReadPosRankSum=|0.2,1|NaN;AS_SB_TABLE=0,6|0,7|0,0;BaseQRankSum=0.006;DP=13;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.742;RAW_MQandDP=37064,13;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 20 10098238 . A . . END=10098244 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,315 20 10098245 . T . . END=10098248 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 20 10098249 . A . . END=10098250 GT:DP:GQ:MIN_DP:PL 0/0:10:18:9:0,18,270 20 10098251 . A . . END=10098255 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 20 10098256 . T . . END=10098264 GT:DP:GQ:MIN_DP:PL 0/0:8:9:6:0,9,135 -20 10098265 . T C, 133.77 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=7200.00|3364.00|0.00;AS_RAW_MQRankSum=|-1.9,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=0,2|0,4|0,0;BaseQRankSum=1.834;DP=6;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.834;RAW_MQ=10564.00;ReadPosRankSum=0.000 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:2,4,0:6:59:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 +20 10098265 . T C, 133.77 . AS_RAW_BaseQRankSum=|1.8,1|NaN;AS_RAW_MQ=7200.00|3364.00|0.00;AS_RAW_MQRankSum=|-1.9,1|NaN;AS_RAW_ReadPosRankSum=|0.0,1|NaN;AS_SB_TABLE=0,2|0,4|0,0;BaseQRankSum=1.834;DP=6;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.834;RAW_MQandDP=10564,6;ReadPosRankSum=0.000 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:2,4,0:6:59:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 20 10098266 . A . . END=10098272 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 20 10098273 . A . . END=10098279 GT:DP:GQ:MIN_DP:PL 0/0:3:6:3:0,6,90 20 10098280 . A . . END=10098290 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,126 20 10098291 . A . . END=10098307 GT:DP:GQ:MIN_DP:PL 0/0:3:6:2:0,6,86 -20 10098308 . AAT A, 0 . AS_RAW_BaseQRankSum=|NaN|NaN;AS_RAW_MQ=7200.00|0.00|0.00;AS_RAW_MQRankSum=|NaN|NaN;AS_RAW_ReadPosRankSum=|NaN|NaN;AS_SB_TABLE=0,0|0,0|0,0;DP=2;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;RAW_MQ=7200.00 GT:AD:DP:GQ:PL:SB 0/0:2,0,0:2:6:0,6,81,6,81,81:0,2,0,0 +20 10098308 . AAT A, 0 . AS_RAW_BaseQRankSum=|NaN|NaN;AS_RAW_MQ=7200.00|0.00|0.00;AS_RAW_MQRankSum=|NaN|NaN;AS_RAW_ReadPosRankSum=|NaN|NaN;AS_SB_TABLE=0,0|0,0|0,0;DP=2;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;RAW_MQandDP=7200,2 GT:AD:DP:GQ:PL:SB 0/0:2,0,0:2:6:0,6,81,6,81,81:0,2,0,0 20 10098311 . A . . END=10098321 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,80 20 10098322 . A . . END=10098327 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,121 20 10098328 . T . . END=10098329 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,169 @@ -1299,7 +1299,7 @@ 20 10098882 . C . . END=10098882 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,1207 20 10098883 . T . . END=10098883 GT:DP:GQ:MIN_DP:PL 0/0:32:56:32:0,56,1237 20 10098884 . C . . END=10098884 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 -20 10098885 . C CA, 433.73 . AS_RAW_BaseQRankSum=|0.1,1|NaN;AS_RAW_MQ=58969.00|18188.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=16,1|13,1|0,0;BaseQRankSum=0.165;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.449;RAW_MQ=77157.00;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 0/1:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 +20 10098885 . C CA, 433.73 . AS_RAW_BaseQRankSum=|0.1,1|NaN;AS_RAW_MQ=58969.00|18188.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=16,1|13,1|0,0;BaseQRankSum=0.165;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.449;RAW_MQandDP=77157,31;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 0/1:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 20 10098886 . C . . END=10098890 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,1260 20 10098891 . C . . END=10098891 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 20 10098892 . G . . END=10098900 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 @@ -1316,7 +1316,7 @@ 20 10098942 . G . . END=10098942 GT:DP:GQ:MIN_DP:PL 0/0:23:63:23:0,63,945 20 10098943 . T . . END=10098943 GT:DP:GQ:MIN_DP:PL 0/0:21:52:21:0,52,766 20 10098944 . G . . END=10098944 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,867 -20 10098945 . T C, 452.77 . AS_RAW_BaseQRankSum=|1.4,1|NaN;AS_RAW_MQ=32049.00|25504.00|0.00;AS_RAW_MQRankSum=|-2.6,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=8,1|13,0|0,0;BaseQRankSum=1.475;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.504;RAW_MQ=57553.00;ReadPosRankSum=1.038 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 +20 10098945 . T C, 452.77 . AS_RAW_BaseQRankSum=|1.4,1|NaN;AS_RAW_MQ=32049.00|25504.00|0.00;AS_RAW_MQRankSum=|-2.6,1|NaN;AS_RAW_ReadPosRankSum=|1.0,1|NaN;AS_SB_TABLE=8,1|13,0|0,0;BaseQRankSum=1.475;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.504;RAW_MQandDP=57553,22;ReadPosRankSum=1.038 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 20 10098946 . C . . END=10098946 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,872 20 10098947 . T . . END=10098947 GT:DP:GQ:MIN_DP:PL 0/0:22:55:22:0,55,842 20 10098948 . G . . END=10098948 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,897 @@ -1324,7 +1324,7 @@ 20 10098952 . C . . END=10098955 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 20 10098956 . A . . END=10098959 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 20 10098960 . G . . END=10098986 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,900 -20 10098987 . C T, 379.77 . AS_RAW_BaseQRankSum=|3.1,1|NaN;AS_RAW_MQ=39249.00|25337.00|0.00;AS_RAW_MQRankSum=|-2.8,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=9,2|13,0|0,0;BaseQRankSum=3.127;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.734;RAW_MQ=64586.00;ReadPosRankSum=0.436 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:408,0,350,441,389,830:9,2,13,0 +20 10098987 . C T, 379.77 . AS_RAW_BaseQRankSum=|3.1,1|NaN;AS_RAW_MQ=39249.00|25337.00|0.00;AS_RAW_MQRankSum=|-2.8,1|NaN;AS_RAW_ReadPosRankSum=|0.4,1|NaN;AS_SB_TABLE=9,2|13,0|0,0;BaseQRankSum=3.127;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.734;RAW_MQandDP=64586,24;ReadPosRankSum=0.436 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:408,0,350,441,389,830:9,2,13,0 20 10098988 . G . . END=10099016 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,890 20 10099017 . T . . END=10099018 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,950 20 10099019 . G . . END=10099020 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 @@ -1332,26 +1332,26 @@ 20 10099022 . C . . END=10099022 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 20 10099023 . T . . END=10099027 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 20 10099028 . A . . END=10099028 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 -20 10099029 . T C, 334.77 . AS_RAW_BaseQRankSum=|-1.9,1|NaN;AS_RAW_MQ=62569.00|17048.00|0.00;AS_RAW_MQRankSum=|-3.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=14,4|9,1|0,0;BaseQRankSum=-1.809;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQ=79617.00;ReadPosRankSum=-1.224 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 +20 10099029 . T C, 334.77 . AS_RAW_BaseQRankSum=|-1.9,1|NaN;AS_RAW_MQ=62569.00|17048.00|0.00;AS_RAW_MQRankSum=|-3.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=14,4|9,1|0,0;BaseQRankSum=-1.809;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQandDP=79617,28;ReadPosRankSum=-1.224 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 20 10099030 . C . . END=10099031 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 20 10099032 . T . . END=10099033 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,945 -20 10099034 . C A, 334.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=62569.00|17048.00|0.00;AS_RAW_MQRankSum=|-3.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.9,1|NaN;AS_SB_TABLE=13,5|9,1|0,0;BaseQRankSum=2.757;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQ=79617.00;ReadPosRankSum=-1.850 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 +20 10099034 . C A, 334.77 . AS_RAW_BaseQRankSum=|2.7,1|NaN;AS_RAW_MQ=62569.00|17048.00|0.00;AS_RAW_MQRankSum=|-3.7,1|NaN;AS_RAW_ReadPosRankSum=|-1.9,1|NaN;AS_SB_TABLE=13,5|9,1|0,0;BaseQRankSum=2.757;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQandDP=79617,28;ReadPosRankSum=-1.850 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 20 10099035 . G . . END=10099039 GT:DP:GQ:MIN_DP:PL 0/0:29:60:26:0,60,900 20 10099040 . T . . END=10099040 GT:DP:GQ:MIN_DP:PL 0/0:26:51:26:0,51,765 20 10099041 . C . . END=10099041 GT:DP:GQ:MIN_DP:PL 0/0:27:54:27:0,54,810 20 10099042 . T . . END=10099043 GT:DP:GQ:MIN_DP:PL 0/0:26:57:24:0,57,855 -20 10099044 . A C, 334.77 . AS_RAW_BaseQRankSum=|-1.2,1|NaN;AS_RAW_MQ=51769.00|8082.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|-2.3,1|NaN;AS_SB_TABLE=12,3|7,2|0,0;BaseQRankSum=-1.148;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQ=59851.00;ReadPosRankSum=-2.207 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 +20 10099044 . A C, 334.77 . AS_RAW_BaseQRankSum=|-1.2,1|NaN;AS_RAW_MQ=51769.00|8082.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|-2.3,1|NaN;AS_SB_TABLE=12,3|7,2|0,0;BaseQRankSum=-1.148;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQandDP=59851,24;ReadPosRankSum=-2.207 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 20 10099045 . C . . END=10099045 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 -20 10099046 . T C, 304.77 . AS_RAW_BaseQRankSum=|-2.2,1|NaN;AS_RAW_MQ=51769.00|8082.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|-2.3,1|NaN;AS_SB_TABLE=12,3|7,2|0,0;BaseQRankSum=-2.165;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQ=59851.00;ReadPosRankSum=-2.297 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 +20 10099046 . T C, 304.77 . AS_RAW_BaseQRankSum=|-2.2,1|NaN;AS_RAW_MQ=51769.00|8082.00|0.00;AS_RAW_MQRankSum=|-4.5,1|NaN;AS_RAW_ReadPosRankSum=|-2.3,1|NaN;AS_SB_TABLE=12,3|7,2|0,0;BaseQRankSum=-2.165;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQandDP=59851,24;ReadPosRankSum=-2.297 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 20 10099047 . G . . END=10099052 GT:DP:GQ:MIN_DP:PL 0/0:24:57:23:0,57,855 20 10099053 . G . . END=10099054 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,810 -20 10099055 . T C, 256.77 . AS_RAW_BaseQRankSum=|-1.6,1|NaN;AS_RAW_MQ=51769.00|6786.00|0.00;AS_RAW_MQRankSum=|-4.4,1|NaN;AS_RAW_ReadPosRankSum=|-2.0,1|NaN;AS_SB_TABLE=11,4|6,2|0,0;BaseQRankSum=-1.554;DP=23;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.316;RAW_MQ=58555.00;ReadPosRankSum=-1.970 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 +20 10099055 . T C, 256.77 . AS_RAW_BaseQRankSum=|-1.6,1|NaN;AS_RAW_MQ=51769.00|6786.00|0.00;AS_RAW_MQRankSum=|-4.4,1|NaN;AS_RAW_ReadPosRankSum=|-2.0,1|NaN;AS_SB_TABLE=11,4|6,2|0,0;BaseQRankSum=-1.554;DP=23;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.316;RAW_MQandDP=58555,23;ReadPosRankSum=-1.970 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 20 10099056 . T . . END=10099061 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,900 20 10099062 . A . . END=10099067 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,921 20 10099068 . G . . END=10099072 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,1042 20 10099073 . T . . END=10099077 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 20 10099078 . G . . END=10099078 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 -20 10099079 . C T, 116.77 . AS_RAW_BaseQRankSum=|1.4,1|NaN;AS_RAW_MQ=70213.00|8485.00|0.00;AS_RAW_MQRankSum=|-2.9,1|NaN;AS_RAW_ReadPosRankSum=|0.9,1|NaN;AS_SB_TABLE=11,12|4,2|0,0;BaseQRankSum=1.434;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.821;RAW_MQ=78698.00;ReadPosRankSum=0.969 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 +20 10099079 . C T, 116.77 . AS_RAW_BaseQRankSum=|1.4,1|NaN;AS_RAW_MQ=70213.00|8485.00|0.00;AS_RAW_MQRankSum=|-2.9,1|NaN;AS_RAW_ReadPosRankSum=|0.9,1|NaN;AS_SB_TABLE=11,12|4,2|0,0;BaseQRankSum=1.434;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.821;RAW_MQandDP=78698,29;ReadPosRankSum=0.969 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 20 10099080 . G . . END=10099089 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 20 10099090 . A . . END=10099095 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 20 10099096 . A . . END=10099096 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1310 @@ -1359,13 +1359,13 @@ 20 10099101 . G . . END=10099105 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 20 10099106 . T . . END=10099106 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 20 10099107 . T . . END=10099110 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1485 -20 10099111 . T TTTTGTTTG, 656.73 . AS_RAW_BaseQRankSum=|-1.3,1|NaN;AS_RAW_MQ=68844.00|15693.00|0.00;AS_RAW_MQRankSum=|-4.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=13,9|7,6|0,0;BaseQRankSum=-1.207;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.071;RAW_MQ=109737.00;ReadPosRankSum=-0.273 GT:AD:DP:GQ:PL:SB 0/1:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 +20 10099111 . T TTTTGTTTG, 656.73 . AS_RAW_BaseQRankSum=|-1.3,1|NaN;AS_RAW_MQ=68844.00|15693.00|0.00;AS_RAW_MQRankSum=|-4.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=13,9|7,6|0,0;BaseQRankSum=-1.207;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.071;RAW_MQandDP=109737,42;ReadPosRankSum=-0.273 GT:AD:DP:GQ:PL:SB 0/1:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 20 10099112 . T . . END=10099139 GT:DP:GQ:MIN_DP:PL 0/0:57:99:49:0,114,1710 -20 10099140 . G T, 1005.77 . AS_RAW_BaseQRankSum=|-0.2,1|NaN;AS_RAW_MQ=108000.00|84512.00|0.00;AS_RAW_MQRankSum=|-2.5,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=18,12|22,10|0,0;BaseQRankSum=-0.114;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.469;RAW_MQ=192512.00;ReadPosRankSum=0.338 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 +20 10099140 . G T, 1005.77 . AS_RAW_BaseQRankSum=|-0.2,1|NaN;AS_RAW_MQ=108000.00|84512.00|0.00;AS_RAW_MQRankSum=|-2.5,1|NaN;AS_RAW_ReadPosRankSum=|0.3,1|NaN;AS_SB_TABLE=18,12|22,10|0,0;BaseQRankSum=-0.114;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.469;RAW_MQandDP=192512,62;ReadPosRankSum=0.338 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 20 10099141 . G . . END=10099189 GT:DP:GQ:MIN_DP:PL 0/0:67:99:64:0,120,1800 -20 10099190 . G T, 1034.77 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=118800.00|96551.00|0.00;AS_RAW_MQRankSum=|-1.8,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=21,12|21,11|0,0;BaseQRankSum=-0.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.711;RAW_MQ=215351.00;ReadPosRankSum=-1.260 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 +20 10099190 . G T, 1034.77 . AS_RAW_BaseQRankSum=|-0.1,1|NaN;AS_RAW_MQ=118800.00|96551.00|0.00;AS_RAW_MQRankSum=|-1.8,1|NaN;AS_RAW_ReadPosRankSum=|-1.3,1|NaN;AS_SB_TABLE=21,12|21,11|0,0;BaseQRankSum=-0.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.711;RAW_MQandDP=215351,65;ReadPosRankSum=-1.260 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 20 10099191 . C . . END=10099219 GT:DP:GQ:MIN_DP:PL 0/0:58:99:46:0,111,1665 -20 10099220 . A G, 577.77 . AS_RAW_BaseQRankSum=|-1.7,1|NaN;AS_RAW_MQ=90000.00|59477.00|0.00;AS_RAW_MQRankSum=|-2.6,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=15,10|11,9|0,0;BaseQRankSum=-1.664;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.596;RAW_MQ=149477.00;ReadPosRankSum=0.629 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 +20 10099220 . A G, 577.77 . AS_RAW_BaseQRankSum=|-1.7,1|NaN;AS_RAW_MQ=90000.00|59477.00|0.00;AS_RAW_MQRankSum=|-2.6,1|NaN;AS_RAW_ReadPosRankSum=|0.6,1|NaN;AS_SB_TABLE=15,10|11,9|0,0;BaseQRankSum=-1.664;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.596;RAW_MQandDP=149477,45;ReadPosRankSum=0.629 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 20 10099221 . T . . END=10099229 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,102,1530 20 10099230 . T . . END=10099233 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1350 20 10099234 . T . . END=10099235 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1305 @@ -1373,16 +1373,16 @@ 20 10099239 . C . . END=10099246 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 20 10099247 . C . . END=10099248 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 20 10099249 . C . . END=10099249 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 -20 10099250 . G A, 699.77 . AS_RAW_BaseQRankSum=|3.1,1|NaN;AS_RAW_MQ=57600.00|61406.00|0.00;AS_RAW_MQRankSum=|-2.3,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=12,4|11,10|0,0;BaseQRankSum=3.170;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.272;RAW_MQ=119006.00;ReadPosRankSum=0.583 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:728,0,424,776,487,1263:12,4,11,10 +20 10099250 . G A, 699.77 . AS_RAW_BaseQRankSum=|3.1,1|NaN;AS_RAW_MQ=57600.00|61406.00|0.00;AS_RAW_MQRankSum=|-2.3,1|NaN;AS_RAW_ReadPosRankSum=|0.5,1|NaN;AS_SB_TABLE=12,4|11,10|0,0;BaseQRankSum=3.170;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.272;RAW_MQandDP=119006,37;ReadPosRankSum=0.583 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:728,0,424,776,487,1263:12,4,11,10 20 10099251 . A . . END=10099269 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1132 -20 10099270 . A C, 0 . AS_RAW_BaseQRankSum=|-2.9,1|NaN;AS_RAW_MQ=92210.00|6058.00|0.00;AS_RAW_MQRankSum=|-2.7,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=19,8|0,3|0,0;BaseQRankSum=-2.866;DP=30;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-2.691;RAW_MQ=98268.00;ReadPosRankSum=-0.138 GT:AD:DP:GQ:PL:SB 0/0:27,3,0:30:60:0,60,1084,81,1092,1113:19,8,0,3 +20 10099270 . A C, 0 . AS_RAW_BaseQRankSum=|-2.9,1|NaN;AS_RAW_MQ=92210.00|6058.00|0.00;AS_RAW_MQRankSum=|-2.7,1|NaN;AS_RAW_ReadPosRankSum=|-0.2,1|NaN;AS_SB_TABLE=19,8|0,3|0,0;BaseQRankSum=-2.866;DP=30;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-2.691;RAW_MQandDP=98268,30;ReadPosRankSum=-0.138 GT:AD:DP:GQ:PL:SB 0/0:27,3,0:30:60:0,60,1084,81,1092,1113:19,8,0,3 20 10099271 . C . . END=10099271 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 20 10099272 . C . . END=10099534 GT:DP:GQ:MIN_DP:PL 0/0:57:99:36:0,99,1485 -20 10099535 . G A, 1335.77 . AS_RAW_BaseQRankSum=|5.0,1|NaN;AS_RAW_MQ=93600.00|132651.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=17,9|22,17|0,0;BaseQRankSum=5.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.418;RAW_MQ=226251.00;ReadPosRankSum=-0.777 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 +20 10099535 . G A, 1335.77 . AS_RAW_BaseQRankSum=|5.0,1|NaN;AS_RAW_MQ=93600.00|132651.00|0.00;AS_RAW_MQRankSum=|-1.5,1|NaN;AS_RAW_ReadPosRankSum=|-0.8,1|NaN;AS_SB_TABLE=17,9|22,17|0,0;BaseQRankSum=5.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.418;RAW_MQandDP=226251,65;ReadPosRankSum=-0.777 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 20 10099536 . T . . END=10099564 GT:DP:GQ:MIN_DP:PL 0/0:67:99:63:0,120,1800 -20 10099565 . C T, 1346.77 . AS_RAW_BaseQRankSum=|4.5,1|NaN;AS_RAW_MQ=111600.00|131810.00|0.00;AS_RAW_MQRankSum=|-1.3,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=23,8|21,17|0,0;BaseQRankSum=4.595;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.266;RAW_MQ=243410.00;ReadPosRankSum=1.225 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 +20 10099565 . C T, 1346.77 . AS_RAW_BaseQRankSum=|4.5,1|NaN;AS_RAW_MQ=111600.00|131810.00|0.00;AS_RAW_MQRankSum=|-1.3,1|NaN;AS_RAW_ReadPosRankSum=|1.2,1|NaN;AS_SB_TABLE=23,8|21,17|0,0;BaseQRankSum=4.595;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.266;RAW_MQandDP=243410,69;ReadPosRankSum=1.225 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 20 10099566 . T . . END=10099754 GT:DP:GQ:MIN_DP:PL 0/0:77:99:66:0,120,1800 -20 10099755 . C T, 1098.77 . AS_RAW_BaseQRankSum=|1.5,1|NaN;AS_RAW_MQ=116569.00|112441.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=20,13|17,15|0,0;BaseQRankSum=1.550;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.022;RAW_MQ=229010.00;ReadPosRankSum=-0.230 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 +20 10099755 . C T, 1098.77 . AS_RAW_BaseQRankSum=|1.5,1|NaN;AS_RAW_MQ=116569.00|112441.00|0.00;AS_RAW_MQRankSum=|-0.1,1|NaN;AS_RAW_ReadPosRankSum=|-0.3,1|NaN;AS_SB_TABLE=20,13|17,15|0,0;BaseQRankSum=1.550;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.022;RAW_MQandDP=229010,65;ReadPosRankSum=-0.230 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 20 10099756 . C . . END=10099831 GT:DP:GQ:MIN_DP:PL 0/0:63:99:58:0,120,1800 -20 10099832 . A G, 1073.77 . AS_RAW_BaseQRankSum=|-4.6,1|NaN;AS_RAW_MQ=133707.00|116569.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=22,17|14,19|0,0;BaseQRankSum=-4.563;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.869;RAW_MQ=250276.00;ReadPosRankSum=-1.023 GT:AD:DP:GQ:PL:SB 0/1:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 +20 10099832 . A G, 1073.77 . AS_RAW_BaseQRankSum=|-4.6,1|NaN;AS_RAW_MQ=133707.00|116569.00|0.00;AS_RAW_MQRankSum=|0.8,1|NaN;AS_RAW_ReadPosRankSum=|-1.1,1|NaN;AS_SB_TABLE=22,17|14,19|0,0;BaseQRankSum=-4.563;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.869;RAW_MQandDP=250276,72;ReadPosRankSum=-1.023 GT:AD:DP:GQ:PL:SB 0/1:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 20 10099833 . T . . END=10100000 GT:DP:GQ:MIN_DP:PL 0/0:85:99:73:0,120,1800 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf.idx b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.alleleSpecific.g.vcf.idx new file mode 100644 index 0000000000000000000000000000000000000000..c777c8154aee6a5877a8bed7a50ede2007a94fcf GIT binary patch literal 863 zcmeHFO9}!p42=k`UAXoLjfflFDvApc{Nc9K$;=ds9omea!+0!j;sI z;qi9M*|7xx?UaReG(p6Dq!6*x4Of-|UVS*lS{o9MPZ)zirpOp5`X&hPLy1}NI=AP@ zmK!Fl$hnNpd0N2UyNH#po#%T^Mmv{Sx+TbzE7`R;Oy?_~ladP~B@>ReX}}iNs8U@_ t0nd#*3DDg^g00J{s;f-Uk6d(S3dZ9^$lsiUoQXv literal 0 HcmV?d00001 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf index 864c8e90d8e..9a02870ebe3 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf @@ -84,29 +84,29 @@ ##INFO= ##INFO= ##INFO= -##INFO= +##INFO= ##INFO= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 20 10000000 . T . . END=10000116 GT:DP:GQ:MIN_DP:PL 0/0:84:99:64:0,120,1800 -20 10000117 . C T, 905.77 . BaseQRankSum=2.136;DP=64;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.913;RAW_MQ=228169.00;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:934,0,1248,1042,1332,2374:16,20,19,9 +20 10000117 . C T, 905.77 . BaseQRankSum=2.136;DP=64;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.913;RAW_MQandDP=228169,64;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:934,0,1248,1042,1332,2374:16,20,19,9 20 10000118 . T . . END=10000210 GT:DP:GQ:MIN_DP:PL 0/0:52:99:44:0,108,1620 -20 10000211 . C T, 941.77 . BaseQRankSum=1.867;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.057;RAW_MQ=188569.00;ReadPosRankSum=0.703 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:970,0,906,1049,988,2036:15,11,11,16 +20 10000211 . C T, 941.77 . BaseQRankSum=1.867;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.057;RAW_MQandDP=188569,53;ReadPosRankSum=0.703 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:970,0,906,1049,988,2036:15,11,11,16 20 10000212 . A . . END=10000438 GT:DP:GQ:MIN_DP:PL 0/0:79:99:55:0,120,1800 -20 10000439 . T G, 2804.77 . DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=279076.00 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 +20 10000439 . T G, 2804.77 . DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=279076,80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 20 10000440 . T . . END=10000585 GT:DP:GQ:MIN_DP:PL 0/0:55:99:41:0,102,1530 20 10000586 . C . . END=10000586 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1503 20 10000587 . G . . END=10000597 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,108,1620 -20 10000598 . T A, 1941.77 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=149628.00 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 +20 10000598 . T A, 1941.77 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=149628,49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 20 10000599 . T . . END=10000693 GT:DP:GQ:MIN_DP:PL 0/0:72:99:48:0,120,1800 -20 10000694 . G A, 1008.77 . BaseQRankSum=3.599;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.114;RAW_MQ=194196.00;ReadPosRankSum=0.657 GT:AD:DP:GQ:PL:SB 0/1:45,37,0:82:99:1037,0,1601,1173,1712,2885:25,20,18,19 +20 10000694 . G A, 1008.77 . BaseQRankSum=3.599;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.114;RAW_MQandDP=194196,82;ReadPosRankSum=0.657 GT:AD:DP:GQ:PL:SB 0/1:45,37,0:82:99:1037,0,1601,1173,1712,2885:25,20,18,19 20 10000695 . G . . END=10000757 GT:DP:GQ:MIN_DP:PL 0/0:89:99:79:0,120,1800 -20 10000758 . T A, 3838.77 . DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=270581.00 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 +20 10000758 . T A, 3838.77 . DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=270581,95 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 20 10000759 . A . . END=10001018 GT:DP:GQ:MIN_DP:PL 0/0:66:99:52:0,120,1800 -20 10001019 . T G, 650.77 . BaseQRankSum=-2.541;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-7.498;RAW_MQ=159195.00;ReadPosRankSum=-0.925 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:679,0,1426,796,1504,2300:17,22,14,12 +20 10001019 . T G, 650.77 . BaseQRankSum=-2.541;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-7.498;RAW_MQandDP=159195,65;ReadPosRankSum=-0.925 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:679,0,1426,796,1504,2300:17,22,14,12 20 10001020 . C . . END=10001297 GT:DP:GQ:MIN_DP:PL 0/0:68:99:46:0,117,1755 -20 10001298 . T A, 2917.77 . DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=218493.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 +20 10001298 . T A, 2917.77 . DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=218493,74 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 20 10001299 . C . . END=10001426 GT:DP:GQ:MIN_DP:PL 0/0:63:99:49:0,111,1800 20 10001427 . T . . END=10001427 GT:DP:GQ:MIN_DP:PL 0/0:53:5:53:0,5,1899 20 10001428 . T . . END=10001429 GT:DP:GQ:MIN_DP:PL 0/0:54:99:53:0,120,1800 @@ -115,25 +115,25 @@ 20 10001433 . T . . END=10001433 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1779 20 10001434 . G . . END=10001434 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 20 10001435 . A . . END=10001435 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1790 -20 10001436 . A AAGGCT, 2301.73 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=92755.00 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 +20 10001436 . A AAGGCT, 2301.73 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=92755,55 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 20 10001437 . A . . END=10001473 GT:DP:GQ:MIN_DP:PL 0/0:61:99:51:0,120,1800 -20 10001474 . C T, 2640.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=140615.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 +20 10001474 . C T, 2640.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140615,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 20 10001475 . G . . END=10001616 GT:DP:GQ:MIN_DP:PL 0/0:95:99:72:0,120,1800 -20 10001617 . C A, 1731.77 . BaseQRankSum=1.261;DP=103;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.373;RAW_MQ=358589.00;ReadPosRankSum=-0.280 GT:AD:DP:GQ:PL:SB 0/1:52,51,0:103:99:1760,0,1781,1916,1935,3851:23,29,33,18 +20 10001617 . C A, 1731.77 . BaseQRankSum=1.261;DP=103;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.373;RAW_MQandDP=358589,103;ReadPosRankSum=-0.280 GT:AD:DP:GQ:PL:SB 0/1:52,51,0:103:99:1760,0,1781,1916,1935,3851:23,29,33,18 20 10001618 . T . . END=10001627 GT:DP:GQ:MIN_DP:PL 0/0:100:99:94:0,120,1800 -20 10001628 . G A, 3898.77 . DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=332548.00 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 +20 10001628 . G A, 3898.77 . DP=95;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=332548,95 GT:AD:DP:GQ:PL:SB 1/1:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 20 10001629 . G . . END=10001660 GT:DP:GQ:MIN_DP:PL 0/0:81:99:76:0,120,1800 -20 10001661 . T C, 3606.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=275574.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 +20 10001661 . T C, 3606.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=275574,81 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 20 10001662 . T . . END=10001669 GT:DP:GQ:MIN_DP:PL 0/0:82:99:81:0,120,1800 -20 10001670 . T G, 3673.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=267297.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 +20 10001670 . T G, 3673.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=267297,81 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 20 10001671 . G . . END=10002057 GT:DP:GQ:MIN_DP:PL 0/0:76:99:57:0,120,1800 -20 10002058 . T G, 2963.77 . BaseQRankSum=1.931;DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=3.068;RAW_MQ=250206.00;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL:SB 1/1:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 +20 10002058 . T G, 2963.77 . BaseQRankSum=1.931;DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=3.068;RAW_MQandDP=250206,75;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL:SB 1/1:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 20 10002059 . A . . END=10002098 GT:DP:GQ:MIN_DP:PL 0/0:77:99:65:0,120,1800 -20 10002099 . C T, 1194.77 . BaseQRankSum=-0.282;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.850;RAW_MQ=205929.00;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 +20 10002099 . C T, 1194.77 . BaseQRankSum=-0.282;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.850;RAW_MQandDP=205929,65;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 20 10002100 . T . . END=10002137 GT:DP:GQ:MIN_DP:PL 0/0:59:99:49:0,120,1800 -20 10002138 . C G, 2443.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=168463.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 +20 10002138 . C G, 2443.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=168463,53 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 20 10002139 . A . . END=10002141 GT:DP:GQ:MIN_DP:PL 0/0:54:99:52:0,120,1800 -20 10002142 . G C, 2407.77 . DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=164863.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 +20 10002142 . G C, 2407.77 . DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=164863,52 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 20 10002143 . T . . END=10002201 GT:DP:GQ:MIN_DP:PL 0/0:48:99:42:0,105,1575 20 10002202 . G . . END=10002203 GT:DP:GQ:MIN_DP:PL 0/0:49:96:47:0,96,1440 20 10002204 . G . . END=10002212 GT:DP:GQ:MIN_DP:PL 0/0:46:99:45:0,99,1485 @@ -142,13 +142,13 @@ 20 10002455 . A . . END=10002455 GT:DP:GQ:MIN_DP:PL 0/0:50:93:50:0,93,1395 20 10002456 . T . . END=10002456 GT:DP:GQ:MIN_DP:PL 0/0:52:78:52:0,78,1170 20 10002457 . A . . END=10002457 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1572 -20 10002458 . G GT,GTTT,GTTTTT, 2135.73 . DP=47;ExcessHet=3.0103;MLEAC=1,1,0,0;MLEAF=0.500,0.500,0.00,0.00;RAW_MQ=127415.00 GT:AD:DP:GQ:PL:SB 1/2:0,6,6,4,0:16:9:2172,654,493,249,0,82,353,33,9,214,876,512,168,254,730:0,0,12,4 +20 10002458 . G GT,GTTT,GTTTTT, 2135.73 . DP=47;ExcessHet=3.0103;MLEAC=1,1,0,0;MLEAF=0.500,0.500,0.00,0.00;RAW_MQandDP=127415,47 GT:AD:DP:GQ:PL:SB 1/2:0,6,6,4,0:16:9:2172,654,493,249,0,82,353,33,9,214,876,512,168,254,730:0,0,12,4 20 10002459 . T . . END=10002459 GT:DP:GQ:MIN_DP:PL 0/0:58:78:58:0,78,1170 20 10002460 . T . . END=10002460 GT:DP:GQ:MIN_DP:PL 0/0:60:87:60:0,87,1305 20 10002461 . T . . END=10002467 GT:DP:GQ:MIN_DP:PL 0/0:62:90:60:0,90,1350 20 10002468 . T . . END=10002468 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,99,1485 20 10002469 . T . . END=10002469 GT:DP:GQ:MIN_DP:PL 0/0:62:81:62:0,81,1215 -20 10002470 . C T, 2522.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=144226.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 +20 10002470 . C T, 2522.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=144226,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 20 10002471 . T . . END=10002471 GT:DP:GQ:MIN_DP:PL 0/0:63:84:63:0,84,1260 20 10002472 . T . . END=10002474 GT:DP:GQ:MIN_DP:PL 0/0:63:90:63:0,90,1350 20 10002475 . T . . END=10002477 GT:DP:GQ:MIN_DP:PL 0/0:70:99:66:0,102,1530 @@ -177,9 +177,9 @@ 20 10002574 . C . . END=10002575 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1215 20 10002576 . C . . END=10002579 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 20 10002580 . C . . END=10002624 GT:DP:GQ:MIN_DP:PL 0/0:49:99:40:0,102,1530 -20 10002625 . G T, 2665.77 . DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=223179.00 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 +20 10002625 . G T, 2665.77 . DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=223179,64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 20 10002626 . G . . END=10003020 GT:DP:GQ:MIN_DP:PL 0/0:65:99:52:0,120,1800 -20 10003021 . C T, 2383.77 . DP=60;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=208779.00 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 +20 10003021 . C T, 2383.77 . DP=60;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=208779,60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 20 10003022 . G . . END=10003110 GT:DP:GQ:MIN_DP:PL 0/0:55:99:39:0,99,1485 20 10003111 . C . . END=10003113 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1395 20 10003114 . C . . END=10003115 GT:DP:GQ:MIN_DP:PL 0/0:40:81:39:0,81,1215 @@ -187,114 +187,114 @@ 20 10003120 . G . . END=10003121 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 20 10003122 . C . . END=10003122 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1427 20 10003123 . A . . END=10003357 GT:DP:GQ:MIN_DP:PL 0/0:88:99:55:0,120,1800 -20 10003358 . A C, 1454.77 . BaseQRankSum=0.004;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.011;RAW_MQ=318169.00;ReadPosRankSum=-1.355 GT:AD:DP:GQ:PL:SB 0/1:45,44,0:89:99:1483,0,1477,1618,1609,3227:31,14,29,15 +20 10003358 . A C, 1454.77 . BaseQRankSum=0.004;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.011;RAW_MQandDP=318169,89;ReadPosRankSum=-1.355 GT:AD:DP:GQ:PL:SB 0/1:45,44,0:89:99:1483,0,1477,1618,1609,3227:31,14,29,15 20 10003359 . C . . END=10003650 GT:DP:GQ:MIN_DP:PL 0/0:78:99:50:0,120,1800 -20 10003651 . T C, 3620.77 . DP=93;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=325876.00 GT:AD:DP:GQ:PL:SB 1/1:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 +20 10003651 . T C, 3620.77 . DP=93;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=325876,93 GT:AD:DP:GQ:PL:SB 1/1:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 20 10003652 . C . . END=10003691 GT:DP:GQ:MIN_DP:PL 0/0:79:99:70:0,120,1800 -20 10003692 . A G, 2609.77 . DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=240338.00 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 +20 10003692 . A G, 2609.77 . DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=240338,68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 20 10003693 . T . . END=10003831 GT:DP:GQ:MIN_DP:PL 0/0:53:99:46:0,111,1665 -20 10003832 . G A, 2705.77 . DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=215436.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 +20 10003832 . G A, 2705.77 . DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=215436,66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 20 10003833 . T . . END=10004093 GT:DP:GQ:MIN_DP:PL 0/0:69:99:43:0,108,1620 -20 10004094 . A C, 1825.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=147492.00 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 +20 10004094 . A C, 1825.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147492,53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 20 10004095 . C . . END=10004146 GT:DP:GQ:MIN_DP:PL 0/0:51:99:45:0,109,1596 -20 10004147 . A G, 1837.77 . DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=157262.00 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 +20 10004147 . A G, 1837.77 . DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=157262,52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 20 10004148 . G . . END=10004192 GT:DP:GQ:MIN_DP:PL 0/0:49:99:45:0,106,1637 -20 10004193 . G T, 918.77 . BaseQRankSum=-0.504;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.421;RAW_MQ=182869.00;ReadPosRankSum=1.512 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:947,0,775,1016,860,1876:12,11,12,17 +20 10004193 . G T, 918.77 . BaseQRankSum=-0.504;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.421;RAW_MQandDP=182869,52;ReadPosRankSum=1.512 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:947,0,775,1016,860,1876:12,11,12,17 20 10004194 . C . . END=10004221 GT:DP:GQ:MIN_DP:PL 0/0:50:99:46:0,105,1575 -20 10004222 . C CA, 12.96 . BaseQRankSum=0.335;DP=54;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.042;RAW_MQ=194729.00;ReadPosRankSum=1.271 GT:AD:DP:GQ:PL:SB 0/1:31,8,0:39:50:50,0,923,153,952,1105:18,13,4,4 -20 10004223 . A AG, 47.73 . BaseQRankSum=-0.480;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.886;RAW_MQ=210769.00;ReadPosRankSum=0.339 GT:AD:DP:GQ:PL:SB 0/1:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 +20 10004222 . C CA, 12.96 . BaseQRankSum=0.335;DP=54;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.042;RAW_MQandDP=194729,54;ReadPosRankSum=1.271 GT:AD:DP:GQ:PL:SB 0/1:31,8,0:39:50:50,0,923,153,952,1105:18,13,4,4 +20 10004223 . A AG, 47.73 . BaseQRankSum=-0.480;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.886;RAW_MQandDP=210769,62;ReadPosRankSum=0.339 GT:AD:DP:GQ:PL:SB 0/1:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 20 10004224 . A . . END=10004224 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1403 20 10004225 . A . . END=10004240 GT:DP:GQ:MIN_DP:PL 0/0:70:99:65:0,117,1755 20 10004241 . G . . END=10004241 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1965 20 10004242 . A . . END=10004350 GT:DP:GQ:MIN_DP:PL 0/0:73:99:58:0,120,1800 -20 10004351 . C G, 2755.77 . DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=243987.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 +20 10004351 . C G, 2755.77 . DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=243987,70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 20 10004352 . A . . END=10004388 GT:DP:GQ:MIN_DP:PL 0/0:65:99:62:0,120,1800 -20 10004389 . T G, 2494.77 . DP=62;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=199570.00 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 +20 10004389 . T G, 2494.77 . DP=62;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=199570,62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 20 10004390 . G . . END=10004609 GT:DP:GQ:MIN_DP:PL 0/0:73:99:58:0,120,1800 -20 10004610 . A C, 3625.77 . DP=89;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=306605.00 GT:AD:DP:GQ:PL:SB 1/1:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 +20 10004610 . A C, 3625.77 . DP=89;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=306605,89 GT:AD:DP:GQ:PL:SB 1/1:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 20 10004611 . C . . END=10004724 GT:DP:GQ:MIN_DP:PL 0/0:75:99:64:0,120,1800 -20 10004725 . A G, 951.77 . BaseQRankSum=-2.154;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.008;RAW_MQ=198562.00;ReadPosRankSum=2.087 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:980,0,1168,1085,1258,2343:10,25,17,13 +20 10004725 . A G, 951.77 . BaseQRankSum=-2.154;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.008;RAW_MQandDP=198562,65;ReadPosRankSum=2.087 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:980,0,1168,1085,1258,2343:10,25,17,13 20 10004726 . T . . END=10004768 GT:DP:GQ:MIN_DP:PL 0/0:66:99:62:0,120,1800 -20 10004769 . TAAAACTATGC T, 981.73 . BaseQRankSum=1.603;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.625;RAW_MQ=216626.00;ReadPosRankSum=1.879 GT:AD:DP:GQ:PL:SB 0/1:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 +20 10004769 . TAAAACTATGC T, 981.73 . BaseQRankSum=1.603;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.625;RAW_MQandDP=216626,79;ReadPosRankSum=1.879 GT:AD:DP:GQ:PL:SB 0/1:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 20 10004780 . A . . END=10004873 GT:DP:GQ:MIN_DP:PL 0/0:77:99:69:0,120,1800 -20 10004874 . A C, 3602.77 . DP=87;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=306223.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 +20 10004874 . A C, 3602.77 . DP=87;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=306223,87 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 20 10004875 . T . . END=10004886 GT:DP:GQ:MIN_DP:PL 0/0:86:99:85:0,120,1800 -20 10004887 . A G, 1323.77 . BaseQRankSum=0.356;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.067;RAW_MQ=300482.00;ReadPosRankSum=-1.114 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 +20 10004887 . A G, 1323.77 . BaseQRankSum=0.356;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.067;RAW_MQandDP=300482,85;ReadPosRankSum=-1.114 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 20 10004888 . A . . END=10005009 GT:DP:GQ:MIN_DP:PL 0/0:81:99:65:0,120,1800 -20 10005010 . C T, 2934.77 . DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=256441.00 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 +20 10005010 . C T, 2934.77 . DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=256441,72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 20 10005011 . G . . END=10005426 GT:DP:GQ:MIN_DP:PL 0/0:72:99:51:0,120,1800 -20 10005427 . C T, 2214.77 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=195241.00 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 +20 10005427 . C T, 2214.77 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=195241,55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 20 10005428 . A . . END=10005498 GT:DP:GQ:MIN_DP:PL 0/0:71:99:57:0,120,1800 -20 10005499 . A G, 3053.77 . DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=273600.00 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 +20 10005499 . A G, 3053.77 . DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=273600,76 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 20 10005500 . T . . END=10005586 GT:DP:GQ:MIN_DP:PL 0/0:71:99:66:0,120,1800 -20 10005587 . A G, 1229.77 . BaseQRankSum=-0.834;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.972;RAW_MQ=256969.00;ReadPosRankSum=0.248 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:1258,0,1236,1366,1345,2710:19,17,16,20 +20 10005587 . A G, 1229.77 . BaseQRankSum=-0.834;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.972;RAW_MQandDP=256969,72;ReadPosRankSum=0.248 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:1258,0,1236,1366,1345,2710:19,17,16,20 20 10005588 . A . . END=10005722 GT:DP:GQ:MIN_DP:PL 0/0:83:99:73:0,120,1800 -20 10005723 . A G, 3062.77 . DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=307369.00 GT:AD:DP:GQ:PL:SB 1/1:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 +20 10005723 . A G, 3062.77 . DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=307369,86 GT:AD:DP:GQ:PL:SB 1/1:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 20 10005724 . A . . END=10006290 GT:DP:GQ:MIN_DP:PL 0/0:82:99:53:0,120,1800 -20 10006291 . G A, 978.77 . BaseQRankSum=0.311;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.081;RAW_MQ=295179.00;ReadPosRankSum=-1.447 GT:AD:DP:GQ:PL:SB 0/1:53,31,0:84:99:1007,0,1905,1167,1998,3165:25,28,16,15 +20 10006291 . G A, 978.77 . BaseQRankSum=0.311;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.081;RAW_MQandDP=295179,84;ReadPosRankSum=-1.447 GT:AD:DP:GQ:PL:SB 0/1:53,31,0:84:99:1007,0,1905,1167,1998,3165:25,28,16,15 20 10006292 . A . . END=10006403 GT:DP:GQ:MIN_DP:PL 0/0:81:99:76:0,120,1800 -20 10006404 . A C, 2928.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=269451.00 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 +20 10006404 . A C, 2928.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=269451,77 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 20 10006405 . C . . END=10006681 GT:DP:GQ:MIN_DP:PL 0/0:78:99:65:0,120,1800 -20 10006682 . T A, 2874.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=257810.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 +20 10006682 . T A, 2874.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=257810,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 20 10006683 . A . . END=10006818 GT:DP:GQ:MIN_DP:PL 0/0:65:99:61:0,120,1800 -20 10006819 . AAAAC A, 2531.73 . DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=284000.00 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 +20 10006819 . AAAAC A, 2531.73 . DP=76;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=284000,76 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 20 10006824 . A . . END=10007149 GT:DP:GQ:MIN_DP:PL 0/0:77:99:59:0,120,1800 -20 10007150 . G C, 669.77 . BaseQRankSum=-4.476;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=226800.00;ReadPosRankSum=-0.077 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 +20 10007150 . G C, 669.77 . BaseQRankSum=-4.476;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=226800,63;ReadPosRankSum=-0.077 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 20 10007151 . G . . END=10007174 GT:DP:GQ:MIN_DP:PL 0/0:57:99:56:0,120,1800 -20 10007175 . C T, 1350.77 . BaseQRankSum=2.249;DP=61;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.319;RAW_MQ=216841.00;ReadPosRankSum=-1.213 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,38,0:61:99:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 +20 10007175 . C T, 1350.77 . BaseQRankSum=2.249;DP=61;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.319;RAW_MQandDP=216841,61;ReadPosRankSum=-1.213 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,38,0:61:99:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 20 10007176 . T . . END=10007351 GT:DP:GQ:MIN_DP:PL 0/0:56:99:47:0,119,1671 -20 10007352 . C T, 2764.77 . DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=245641.00 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 +20 10007352 . C T, 2764.77 . DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=245641,69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 20 10007353 . A . . END=10007530 GT:DP:GQ:MIN_DP:PL 0/0:75:99:58:0,120,1800 -20 10007531 . A G, 2920.77 . DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=256969.00 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 +20 10007531 . A G, 2920.77 . DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=256969,72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 20 10007532 . G . . END=10007979 GT:DP:GQ:MIN_DP:PL 0/0:80:99:65:0,120,1800 -20 10007980 . A C, 3524.77 . DP=90;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=331800.00 GT:AD:DP:GQ:PL:SB 1/1:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 +20 10007980 . A C, 3524.77 . DP=90;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=331800,90 GT:AD:DP:GQ:PL:SB 1/1:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 20 10007981 . A . . END=10008028 GT:DP:GQ:MIN_DP:PL 0/0:86:99:80:0,120,1800 -20 10008029 . T TA, 1986.73 . BaseQRankSum=0.409;DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.576;RAW_MQ=327251.00;ReadPosRankSum=-1.326 GT:AD:DP:GQ:PL:SB 1/1:3,72,0:75:99:2024,145,0,2033,222,2110:1,2,27,45 +20 10008029 . T TA, 1986.73 . BaseQRankSum=0.409;DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.576;RAW_MQandDP=327251,88;ReadPosRankSum=-1.326 GT:AD:DP:GQ:PL:SB 1/1:3,72,0:75:99:2024,145,0,2033,222,2110:1,2,27,45 20 10008030 . A . . END=10008145 GT:DP:GQ:MIN_DP:PL 0/0:82:99:76:0,120,1800 -20 10008146 . TA T, 2141.73 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=268000.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 +20 10008146 . TA T, 2141.73 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=268000,73 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 20 10008148 . A . . END=10008220 GT:DP:GQ:MIN_DP:PL 0/0:80:99:72:0,120,1800 -20 10008221 . T C, 3224.77 . DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=289669.00 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 +20 10008221 . T C, 3224.77 . DP=80;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=289669,80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 20 10008222 . T . . END=10008457 GT:DP:GQ:MIN_DP:PL 0/0:64:99:45:0,108,1620 -20 10008458 . T G, 2654.77 . DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=191842.00 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 +20 10008458 . T G, 2654.77 . DP=69;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=191842,69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 20 10008459 . A . . END=10008732 GT:DP:GQ:MIN_DP:PL 0/0:70:99:40:0,105,1575 20 10008733 . T . . END=10008733 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1689 20 10008734 . G . . END=10008741 GT:DP:GQ:MIN_DP:PL 0/0:48:99:47:0,120,1800 -20 10008742 . G T, 715.77 . BaseQRankSum=3.893;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.502;RAW_MQ=67874.00;ReadPosRankSum=0.190 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 +20 10008742 . G T, 715.77 . BaseQRankSum=3.893;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.502;RAW_MQandDP=67874,49;ReadPosRankSum=0.190 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 20 10008743 . T . . END=10008757 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,99,1485 -20 10008758 . C CA, 684.14 . BaseQRankSum=0.130;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=-1.168;RAW_MQ=54656.00;ReadPosRankSum=-0.052 GT:AD:DP:GQ:PL:SB 1/1:4,31,0:35:10:721,10,0,733,102,825:3,1,16,15 +20 10008758 . C CA, 684.14 . BaseQRankSum=0.130;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=-1.168;RAW_MQandDP=54656,44;ReadPosRankSum=-0.052 GT:AD:DP:GQ:PL:SB 1/1:4,31,0:35:10:721,10,0,733,102,825:3,1,16,15 20 10008759 . A . . END=10008772 GT:DP:GQ:MIN_DP:PL 0/0:55:99:53:0,120,1800 20 10008773 . T . . END=10008773 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1660 20 10008774 . T . . END=10008774 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,117,1755 20 10008775 . A . . END=10008775 GT:DP:GQ:MIN_DP:PL 0/0:55:60:55:0,60,1923 20 10008776 . G . . END=10008920 GT:DP:GQ:MIN_DP:PL 0/0:54:99:45:0,99,1480 -20 10008921 . C CA, 253.73 . BaseQRankSum=0.610;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.906;RAW_MQ=155512.00;ReadPosRankSum=0.173 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,16,0:34:99:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 +20 10008921 . C CA, 253.73 . BaseQRankSum=0.610;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.906;RAW_MQandDP=155512,49;ReadPosRankSum=0.173 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,16,0:34:99:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 20 10008922 . A . . END=10008942 GT:DP:GQ:MIN_DP:PL 0/0:53:99:47:0,114,1710 20 10008943 . A . . END=10008944 GT:DP:GQ:MIN_DP:PL 0/0:47:78:47:0,78,1170 20 10008945 . A . . END=10008947 GT:DP:GQ:MIN_DP:PL 0/0:47:81:46:0,81,1215 -20 10008948 . TA T, 2057.73 . BaseQRankSum=0.994;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=2.047;RAW_MQ=138622.00;ReadPosRankSum=0.884 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 +20 10008948 . TA T, 2057.73 . BaseQRankSum=0.994;DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=2.047;RAW_MQandDP=138622,52;ReadPosRankSum=0.884 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 20 10008950 . A . . END=10008950 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1485 20 10008951 . A . . END=10008951 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1395 -20 10008952 . CACACACACACACA C,CCA,CCACACACACA,CCACACACACACA, 1666.73 . BaseQRankSum=0.941;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,1,0;MLEAF=0.00,0.500,0.00,0.500,0.00;MQRankSum=1.844;RAW_MQ=154068.00;ReadPosRankSum=0.716 GT:AD:DP:GQ:PL:SB 2/4:1,3,14,5,11,0:34:99:1704,876,1258,525,811,845,726,514,173,703,582,342,0,443,530,1135,1092,744,779,607,1321:1,0,25,8 +20 10008952 . CACACACACACACA C,CCA,CCACACACACA,CCACACACACACA, 1666.73 . BaseQRankSum=0.941;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,1,0;MLEAF=0.00,0.500,0.00,0.500,0.00;MQRankSum=1.844;RAW_MQandDP=154068,59;ReadPosRankSum=0.716 GT:AD:DP:GQ:PL:SB 2/4:1,3,14,5,11,0:34:99:1704,876,1258,525,811,845,726,514,173,703,582,342,0,443,530,1135,1092,744,779,607,1321:1,0,25,8 20 10008966 . C . . END=10008986 GT:DP:GQ:MIN_DP:PL 0/0:58:99:56:0,120,1800 20 10008987 . A . . END=10008989 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,2181 20 10008990 . C . . END=10009226 GT:DP:GQ:MIN_DP:PL 0/0:61:99:38:0,102,1530 -20 10009227 . A G, 1369.77 . BaseQRankSum=-2.220;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.428;RAW_MQ=202588.00;ReadPosRankSum=-1.159 GT:AD:DP:GQ:PL:SB 0/1:23,39,0:62:99:1398,0,740,1468,857,2325:16,7,19,20 +20 10009227 . A G, 1369.77 . BaseQRankSum=-2.220;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.428;RAW_MQandDP=202588,62;ReadPosRankSum=-1.159 GT:AD:DP:GQ:PL:SB 0/1:23,39,0:62:99:1398,0,740,1468,857,2325:16,7,19,20 20 10009228 . G . . END=10009245 GT:DP:GQ:MIN_DP:PL 0/0:62:99:59:0,120,1800 -20 10009246 . A G, 3002.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=242208.00 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3031,231,0,3031,231,3031:0,0,42,35 +20 10009246 . A G, 3002.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=242208,77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3031,231,0,3031,231,3031:0,0,42,35 20 10009247 . A . . END=10009399 GT:DP:GQ:MIN_DP:PL 0/0:86:99:68:0,120,1800 -20 10009400 . T A, 2998.77 . DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=266400.00 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 +20 10009400 . T A, 2998.77 . DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=266400,74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 20 10009401 . A . . END=10009511 GT:DP:GQ:MIN_DP:PL 0/0:78:99:72:0,120,1800 -20 10009512 . C G, 3039.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=263240.00 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 +20 10009512 . C G, 3039.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=263240,77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 20 10009513 . A . . END=10009718 GT:DP:GQ:MIN_DP:PL 0/0:81:99:63:0,120,1800 -20 10009719 . A G, 1895.77 . DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=207410.00 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 +20 10009719 . A G, 1895.77 . DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=207410,59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 20 10009720 . T . . END=10009794 GT:DP:GQ:MIN_DP:PL 0/0:54:99:47:0,120,1800 -20 10009795 . A G, 1880.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=166969.00 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 +20 10009795 . A G, 1880.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=166969,47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 20 10009796 . C . . END=10009832 GT:DP:GQ:MIN_DP:PL 0/0:49:99:44:0,99,1485 20 10009833 . A . . END=10009840 GT:DP:GQ:MIN_DP:PL 0/0:53:66:51:0,66,990 20 10009841 . A . . END=10009841 GT:DP:GQ:MIN_DP:PL 0/0:51:39:51:0,39,585 -20 10009842 . G GAA, 532.73 . BaseQRankSum=0.872;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.603;RAW_MQ=150092.00;ReadPosRankSum=1.720 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:570,0,690,629,738,1367:9,10,8,7 +20 10009842 . G GAA, 532.73 . BaseQRankSum=0.872;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.603;RAW_MQandDP=150092,51;ReadPosRankSum=1.720 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:570,0,690,629,738,1367:9,10,8,7 20 10009843 . A . . END=10009843 GT:DP:GQ:MIN_DP:PL 0/0:51:36:51:0,36,540 -20 10009844 . G A, 661.77 . BaseQRankSum=1.048;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.975;RAW_MQ=147168.00;ReadPosRankSum=-1.555 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 +20 10009844 . G A, 661.77 . BaseQRankSum=1.048;DP=51;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.975;RAW_MQandDP=147168,51;ReadPosRankSum=-1.555 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 20 10009845 . A . . END=10009847 GT:DP:GQ:MIN_DP:PL 0/0:51:42:51:0,42,630 20 10009848 . G . . END=10009848 GT:DP:GQ:MIN_DP:PL 0/0:54:51:54:0,51,765 20 10009849 . A . . END=10009850 GT:DP:GQ:MIN_DP:PL 0/0:55:57:54:0,57,855 @@ -303,13 +303,13 @@ 20 10009861 . A . . END=10009864 GT:DP:GQ:MIN_DP:PL 0/0:58:84:56:0,84,1260 20 10009865 . A . . END=10009869 GT:DP:GQ:MIN_DP:PL 0/0:57:90:56:0,90,1350 20 10009870 . G . . END=10009870 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,99,1485 -20 10009871 . A G, 658.77 . BaseQRankSum=-0.803;DP=60;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.495;RAW_MQ=154737.00;ReadPosRankSum=1.539 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 +20 10009871 . A G, 658.77 . BaseQRankSum=-0.803;DP=60;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.495;RAW_MQandDP=154737,60;ReadPosRankSum=1.539 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 20 10009872 . G . . END=10009874 GT:DP:GQ:MIN_DP:PL 0/0:57:99:55:0,108,1620 -20 10009875 . A G,AGGGAGG, 2369.73 . BaseQRankSum=0.378;DP=57;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;MQRankSum=1.361;RAW_MQ=143937.00;ReadPosRankSum=1.040 GT:AD:DP:GQ:PL:SB 1/2:2,15,13,0:30:99:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 +20 10009875 . A G,AGGGAGG, 2369.73 . BaseQRankSum=0.378;DP=57;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;MQRankSum=1.361;RAW_MQandDP=143937,57;ReadPosRankSum=1.040 GT:AD:DP:GQ:PL:SB 1/2:2,15,13,0:30:99:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 20 10009876 . G . . END=10009878 GT:DP:GQ:MIN_DP:PL 0/0:52:99:51:0,114,1710 -20 10009879 . A G, 2244.77 . BaseQRankSum=1.534;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=1.570;RAW_MQ=120661.00;ReadPosRankSum=1.113 GT:AD:DP:GQ:PL:SB 1/1:2,47,0:49:99:2273,150,0,2276,154,2279:2,0,15,32 +20 10009879 . A G, 2244.77 . BaseQRankSum=1.534;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=1.570;RAW_MQandDP=120661,49;ReadPosRankSum=1.113 GT:AD:DP:GQ:PL:SB 1/1:2,47,0:49:99:2273,150,0,2276,154,2279:2,0,15,32 20 10009880 . G . . END=10009882 GT:DP:GQ:MIN_DP:PL 0/0:49:99:48:0,120,1800 -20 10009883 . A G, 2151.77 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=129338.00 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2180,147,0,2180,147,2181:0,0,15,32 +20 10009883 . A G, 2151.77 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129338,49 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2180,147,0,2180,147,2181:0,0,15,32 20 10009884 . G . . END=10009884 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 20 10009885 . A . . END=10009885 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1815 20 10009886 . A . . END=10009886 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1567 @@ -320,25 +320,25 @@ 20 10009893 . A . . END=10009893 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,2005 20 10009894 . G . . END=10009894 GT:DP:GQ:MIN_DP:PL 0/0:53:48:53:0,48,1842 20 10009895 . G . . END=10010392 GT:DP:GQ:MIN_DP:PL 0/0:70:99:45:0,111,1665 -20 10010393 . T G, 1464.77 . BaseQRankSum=-3.351;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.284;RAW_MQ=278882.00;ReadPosRankSum=-1.738 GT:AD:DP:GQ:PL:SB 0/1:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 +20 10010393 . T G, 1464.77 . BaseQRankSum=-3.351;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.284;RAW_MQandDP=278882,79;ReadPosRankSum=-1.738 GT:AD:DP:GQ:PL:SB 0/1:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 20 10010394 . T . . END=10010535 GT:DP:GQ:MIN_DP:PL 0/0:83:99:67:0,120,1800 -20 10010536 . G GA, 2462.73 . DP=85;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=322900.00 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 +20 10010536 . G GA, 2462.73 . DP=85;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=322900,85 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 20 10010537 . A . . END=10010765 GT:DP:GQ:MIN_DP:PL 0/0:79:99:68:0,120,1800 -20 10010766 . T G, 2411.77 . DP=67;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=241200.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 +20 10010766 . T G, 2411.77 . DP=67;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=241200,67 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 20 10010767 . G . . END=10010831 GT:DP:GQ:MIN_DP:PL 0/0:74:99:61:0,120,1800 -20 10010832 . T C, 2951.77 . DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=265538.00 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 +20 10010832 . T C, 2951.77 . DP=75;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=265538,75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 20 10010833 . A . . END=10011074 GT:DP:GQ:MIN_DP:PL 0/0:89:99:73:0,120,1800 -20 10011075 . C T, 1325.77 . BaseQRankSum=5.364;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=298800.00;ReadPosRankSum=-1.036 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1354,0,1333,1485,1450,2935:22,22,22,17 +20 10011075 . C T, 1325.77 . BaseQRankSum=5.364;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=298800,83;ReadPosRankSum=-1.036 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1354,0,1333,1485,1450,2935:22,22,22,17 20 10011076 . G . . END=10011308 GT:DP:GQ:MIN_DP:PL 0/0:74:99:52:0,120,1800 -20 10011309 . T C, 2692.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=277200.00 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 +20 10011309 . T C, 2692.77 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=277200,77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 20 10011310 . G . . END=10011516 GT:DP:GQ:MIN_DP:PL 0/0:80:99:70:0,120,1800 -20 10011517 . GAA G,GA,GAAA, 490.73 . BaseQRankSum=0.690;DP=91;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=1.797;RAW_MQ=326510.00;ReadPosRankSum=0.315 GT:AD:DP:GQ:PL:SB 0/2:37,2,28,6,0:73:99:528,611,2120,0,1042,875,604,1499,722,1648,667,1700,966,1470,1638:23,14,19,17 +20 10011517 . GAA G,GA,GAAA, 490.73 . BaseQRankSum=0.690;DP=91;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=1.797;RAW_MQandDP=326510,91;ReadPosRankSum=0.315 GT:AD:DP:GQ:PL:SB 0/2:37,2,28,6,0:73:99:528,611,2120,0,1042,875,604,1499,722,1648,667,1700,966,1470,1638:23,14,19,17 20 10011520 . A . . END=10011665 GT:DP:GQ:MIN_DP:PL 0/0:68:99:62:0,120,1800 -20 10011666 . C T, 2961.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=254523.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 +20 10011666 . C T, 2961.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=254523,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 20 10011667 . A . . END=10011938 GT:DP:GQ:MIN_DP:PL 0/0:87:99:64:0,111,1665 -20 10011939 . C T, 2469.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=193043.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 +20 10011939 . C T, 2469.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=193043,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 20 10011940 . G . . END=10012020 GT:DP:GQ:MIN_DP:PL 0/0:56:99:42:0,101,1575 -20 10012021 . CA C, 1975.73 . DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=228076.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 +20 10012021 . CA C, 1975.73 . DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=228076,70 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 20 10012023 . A . . END=10012147 GT:DP:GQ:MIN_DP:PL 0/0:70:99:38:0,99,1485 20 10012148 . G . . END=10012157 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 20 10012158 . A . . END=10012159 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 @@ -390,7 +390,7 @@ 20 10012355 . T . . END=10012357 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 20 10012358 . G . . END=10012360 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,765 20 10012361 . C . . END=10012361 GT:DP:GQ:MIN_DP:PL 0/0:23:48:23:0,48,720 -20 10012362 . G T, 835.77 . DP=23;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=66527.00 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:864,69,0,864,69,864:0,0,2,21 +20 10012362 . G T, 835.77 . DP=23;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=66527,23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:864,69,0,864,69,864:0,0,2,21 20 10012363 . G . . END=10012364 GT:DP:GQ:MIN_DP:PL 0/0:22:51:21:0,51,765 20 10012365 . G . . END=10012372 GT:DP:GQ:MIN_DP:PL 0/0:21:54:19:0,54,810 20 10012373 . G . . END=10012376 GT:DP:GQ:MIN_DP:PL 0/0:18:51:17:0,51,616 @@ -399,9 +399,9 @@ 20 10012379 . T . . END=10012379 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 20 10012380 . G . . END=10012381 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 20 10012382 . A . . END=10012383 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,585 -20 10012384 . T C, 229.77 . BaseQRankSum=-1.773;DP=18;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.811;RAW_MQ=51286.00;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:258,0,355,288,379,667:0,10,2,6 +20 10012384 . T C, 229.77 . BaseQRankSum=-1.773;DP=18;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.811;RAW_MQandDP=51286,18;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:258,0,355,288,379,667:0,10,2,6 20 10012385 . T . . END=10012386 GT:DP:GQ:MIN_DP:PL 0/0:18:39:17:0,39,585 -20 10012387 . T C, 533.77 . DP=16;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=44086.00 GT:AD:DP:GQ:PL:SB 1/1:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 +20 10012387 . T C, 533.77 . DP=16;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=44086,16 GT:AD:DP:GQ:PL:SB 1/1:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 20 10012388 . G . . END=10012395 GT:DP:GQ:MIN_DP:PL 0/0:15:36:13:0,36,540 20 10012396 . G . . END=10012398 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 20 10012399 . G . . END=10012402 GT:DP:GQ:MIN_DP:PL 0/0:16:45:15:0,45,561 @@ -441,22 +441,22 @@ 20 10012473 . G . . END=10012474 GT:DP:GQ:MIN_DP:PL 0/0:20:39:19:0,39,585 20 10012475 . C . . END=10012476 GT:DP:GQ:MIN_DP:PL 0/0:20:36:19:0,36,540 20 10012477 . G . . END=10012478 GT:DP:GQ:MIN_DP:PL 0/0:18:33:17:0,33,495 -20 10012479 . A G, 592.77 . DP=17;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=45990.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 +20 10012479 . A G, 592.77 . DP=17;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=45990,17 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 20 10012480 . G . . END=10012482 GT:DP:GQ:MIN_DP:PL 0/0:16:24:15:0,24,360 20 10012483 . G . . END=10012489 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 20 10012490 . G . . END=10012490 GT:DP:GQ:MIN_DP:PL 0/0:11:22:11:0,22,359 20 10012491 . T . . END=10012491 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,269 20 10012492 . G . . END=10012497 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,304 -20 10012498 . C G, 466.77 . DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=22302.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 +20 10012498 . C G, 466.77 . DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=22302,11 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 20 10012499 . G . . END=10012501 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,334 20 10012502 . C . . END=10012503 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 20 10012504 . C . . END=10012508 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 20 10012509 . A . . END=10012513 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 20 10012514 . C . . END=10012515 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 20 10012516 . G . . END=10012517 GT:DP:GQ:MIN_DP:PL 0/0:10:18:9:0,18,270 -20 10012518 . T C, 406.77 . DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=15102.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 +20 10012518 . T C, 406.77 . DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=15102,9 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 20 10012519 . C . . END=10012520 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 -20 10012521 . C T, 46.77 . BaseQRankSum=2.362;DP=11;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.038;RAW_MQ=19192.00;ReadPosRankSum=1.973 GT:AD:DP:GQ:PL:SB 0/1:8,3,0:11:75:75,0,224,99,233,332:4,4,2,1 +20 10012521 . C T, 46.77 . BaseQRankSum=2.362;DP=11;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.038;RAW_MQandDP=19192,11;ReadPosRankSum=1.973 GT:AD:DP:GQ:PL:SB 0/1:8,3,0:11:75:75,0,224,99,233,332:4,4,2,1 20 10012522 . A . . END=10012525 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,360 20 10012526 . G . . END=10012526 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 20 10012527 . C . . END=10012545 GT:DP:GQ:MIN_DP:PL 0/0:7:18:6:0,18,188 @@ -467,9 +467,9 @@ 20 10012563 . G . . END=10012564 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 20 10012565 . G . . END=10012567 GT:DP:GQ:MIN_DP:PL 0/0:9:24:8:0,24,261 20 10012568 . G . . END=10012569 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,315 -20 10012570 . G GCA, 457.73 . DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=12736.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 +20 10012570 . G GCA, 457.73 . DP=9;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=12736,9 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 20 10012571 . G . . END=10012571 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 -20 10012572 . GT G, 457.73 . DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=17177.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 +20 10012572 . GT G, 457.73 . DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=17177,11 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 20 10012574 . G . . END=10012575 GT:DP:GQ:MIN_DP:PL 0/0:12:30:11:0,30,450 20 10012576 . T . . END=10012577 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 20 10012578 . G . . END=10012578 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 @@ -489,11 +489,11 @@ 20 10012622 . G . . END=10012624 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 20 10012625 . C . . END=10012625 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 20 10012626 . C . . END=10012630 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,900 -20 10012631 . C CG, 484.73 . BaseQRankSum=-1.030;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.670;RAW_MQ=49065.00;ReadPosRankSum=-1.813 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 +20 10012631 . C CG, 484.73 . BaseQRankSum=-1.030;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.670;RAW_MQandDP=49065,21;ReadPosRankSum=-1.813 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 20 10012632 . G . . END=10012632 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 20 10012633 . C . . END=10012633 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 20 10012634 . C . . END=10012635 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 -20 10012636 . G C, 527.77 . BaseQRankSum=2.711;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.513;RAW_MQ=52665.00;ReadPosRankSum=-1.915 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 +20 10012636 . G C, 527.77 . BaseQRankSum=2.711;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.513;RAW_MQandDP=52665,22;ReadPosRankSum=-1.915 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 20 10012637 . A . . END=10012639 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 20 10012640 . C . . END=10012640 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 20 10012641 . T . . END=10012662 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,895 @@ -511,7 +511,7 @@ 20 10012703 . G . . END=10012706 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 20 10012707 . T . . END=10012707 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1121 20 10012708 . G . . END=10012713 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 -20 10012714 . G C, 1300.77 . DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=98462.00 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 +20 10012714 . G C, 1300.77 . DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=98462,35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 20 10012715 . C . . END=10012715 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 20 10012716 . A . . END=10012718 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 20 10012719 . G . . END=10012722 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 @@ -525,7 +525,7 @@ 20 10012743 . C . . END=10012746 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 20 10012747 . C . . END=10012747 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 20 10012748 . A . . END=10012750 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 -20 10012751 . T C, 937.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=78546.00 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 +20 10012751 . T C, 937.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=78546,30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 20 10012752 . C . . END=10012752 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 20 10012753 . T . . END=10012753 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,1014 20 10012754 . C . . END=10012754 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 @@ -562,13 +562,13 @@ 20 10012922 . A . . END=10012926 GT:DP:GQ:MIN_DP:PL 0/0:38:87:36:0,87,1305 20 10012927 . A . . END=10012927 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1391 20 10012928 . C . . END=10013118 GT:DP:GQ:MIN_DP:PL 0/0:66:99:38:0,99,1485 -20 10013119 . C T, 1011.77 . BaseQRankSum=2.724;DP=59;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.089;RAW_MQ=156381.00;ReadPosRankSum=0.159 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 +20 10013119 . C T, 1011.77 . BaseQRankSum=2.724;DP=59;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.089;RAW_MQandDP=156381,59;ReadPosRankSum=0.159 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 20 10013120 . A . . END=10013573 GT:DP:GQ:MIN_DP:PL 0/0:66:99:52:0,120,1800 -20 10013574 . G A, 1050.77 . BaseQRankSum=3.469;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.271;RAW_MQ=232598.00;ReadPosRankSum=0.706 GT:AD:DP:GQ:PL:SB 0/1:38,31,0:69:99:1079,0,1301,1194,1394,2588:15,23,7,24 +20 10013574 . G A, 1050.77 . BaseQRankSum=3.469;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.271;RAW_MQandDP=232598,69;ReadPosRankSum=0.706 GT:AD:DP:GQ:PL:SB 0/1:38,31,0:69:99:1079,0,1301,1194,1394,2588:15,23,7,24 20 10013575 . T . . END=10014589 GT:DP:GQ:MIN_DP:PL 0/0:72:99:43:0,101,1658 20 10014590 . A . . END=10014590 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1625 20 10014591 . T . . END=10014989 GT:DP:GQ:MIN_DP:PL 0/0:72:99:42:0,116,1732 -20 10014990 . C CAT, 1237.73 . BaseQRankSum=1.930;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.107;RAW_MQ=321369.00;ReadPosRankSum=-0.437 GT:AD:DP:GQ:PL:SB 0/1:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 +20 10014990 . C CAT, 1237.73 . BaseQRankSum=1.930;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=3.107;RAW_MQandDP=321369,87;ReadPosRankSum=-0.437 GT:AD:DP:GQ:PL:SB 0/1:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 20 10014991 . A . . END=10015385 GT:DP:GQ:MIN_DP:PL 0/0:73:99:41:0,102,1530 20 10015386 . G . . END=10015388 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1350 20 10015389 . A . . END=10015390 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1215 @@ -631,7 +631,7 @@ 20 10015659 . G . . END=10015661 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 20 10015662 . G . . END=10015675 GT:DP:GQ:MIN_DP:PL 0/0:13:33:11:0,33,418 20 10015676 . G . . END=10015678 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 -20 10015679 . C T, 140.77 . BaseQRankSum=0.200;DP=10;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=36000.00;ReadPosRankSum=0.497 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 +20 10015679 . C T, 140.77 . BaseQRankSum=0.200;DP=10;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=36000,10;ReadPosRankSum=0.497 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 20 10015680 . G . . END=10015683 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 20 10015684 . C . . END=10015687 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 20 10015688 . C . . END=10015690 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,292 @@ -654,7 +654,7 @@ 20 10015743 . C . . END=10015747 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 20 10015748 . G . . END=10015752 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,608 20 10015753 . T . . END=10015760 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,757 -20 10015761 . T C, 344.77 . BaseQRankSum=-1.982;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.294;RAW_MQ=76441.00;ReadPosRankSum=1.805 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 +20 10015761 . T C, 344.77 . BaseQRankSum=-1.982;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.294;RAW_MQandDP=76441,22;ReadPosRankSum=1.805 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 20 10015762 . A . . END=10015766 GT:DP:GQ:MIN_DP:PL 0/0:23:66:22:0,66,839 20 10015767 . C . . END=10015769 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,906 20 10015770 . C . . END=10015770 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 @@ -678,21 +678,21 @@ 20 10017080 . A . . END=10017519 GT:DP:GQ:MIN_DP:PL 0/0:61:99:45:0,109,1710 20 10017520 . A . . END=10017520 GT:DP:GQ:MIN_DP:PL 0/0:51:64:51:0,64,1772 20 10017521 . C . . END=10018157 GT:DP:GQ:MIN_DP:PL 0/0:77:99:45:0,114,1710 -20 10018158 . G C, 1639.77 . BaseQRankSum=5.213;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.118;RAW_MQ=318169.00;ReadPosRankSum=1.179 GT:AD:DP:GQ:PL:SB 0/1:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 +20 10018158 . G C, 1639.77 . BaseQRankSum=5.213;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.118;RAW_MQandDP=318169,89;ReadPosRankSum=1.179 GT:AD:DP:GQ:PL:SB 0/1:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 20 10018159 . C . . END=10018554 GT:DP:GQ:MIN_DP:PL 0/0:82:99:68:0,120,1800 -20 10018555 . G A, 1567.77 . BaseQRankSum=-0.627;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=288000.00;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL:SB 0/1:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 +20 10018555 . G A, 1567.77 . BaseQRankSum=-0.627;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=288000,80;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL:SB 0/1:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 20 10018556 . C . . END=10019092 GT:DP:GQ:MIN_DP:PL 0/0:83:99:70:0,120,1800 -20 10019093 . A G, 1244.77 . BaseQRankSum=0.452;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.073;RAW_MQ=245641.00;ReadPosRankSum=-0.252 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 +20 10019093 . A G, 1244.77 . BaseQRankSum=0.452;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.073;RAW_MQandDP=245641,69;ReadPosRankSum=-0.252 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 20 10019094 . C . . END=10020228 GT:DP:GQ:MIN_DP:PL 0/0:79:99:60:0,120,1800 -20 10020229 . G A, 1538.77 . BaseQRankSum=5.792;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.104;RAW_MQ=290210.00;ReadPosRankSum=-0.549 GT:AD:DP:GQ:PL:SB 0/1:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 +20 10020229 . G A, 1538.77 . BaseQRankSum=5.792;DP=82;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.104;RAW_MQandDP=290210,82;ReadPosRankSum=-0.549 GT:AD:DP:GQ:PL:SB 0/1:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 20 10020230 . T . . END=10020889 GT:DP:GQ:MIN_DP:PL 0/0:80:99:42:0,99,1485 20 10020890 . A . . END=10020896 GT:DP:GQ:MIN_DP:PL 0/0:42:93:40:0,93,1395 20 10020897 . C . . END=10020918 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1530 20 10020919 . T . . END=10020919 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1765 20 10020920 . T . . END=10023688 GT:DP:GQ:MIN_DP:PL 0/0:80:99:46:0,105,1721 -20 10023689 . G A, 1852.77 . BaseQRankSum=2.144;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.352;RAW_MQ=285769.00;ReadPosRankSum=1.162 GT:AD:DP:GQ:PL:SB 0/1:29,51,0:80:99:1881,0,946,1968,1099,3067:16,13,26,25 +20 10023689 . G A, 1852.77 . BaseQRankSum=2.144;DP=80;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.352;RAW_MQandDP=285769,80;ReadPosRankSum=1.162 GT:AD:DP:GQ:PL:SB 0/1:29,51,0:80:99:1881,0,946,1968,1099,3067:16,13,26,25 20 10023690 . G . . END=10024106 GT:DP:GQ:MIN_DP:PL 0/0:70:99:57:0,120,1800 -20 10024107 . C T, 1694.77 . BaseQRankSum=5.770;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.546;RAW_MQ=303563.00;ReadPosRankSum=0.148 GT:AD:DP:GQ:PL:SB 0/1:38,48,0:86:99:1723,0,1086,1837,1230,3068:21,17,28,20 +20 10024107 . C T, 1694.77 . BaseQRankSum=5.770;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.546;RAW_MQandDP=303563,86;ReadPosRankSum=0.148 GT:AD:DP:GQ:PL:SB 0/1:38,48,0:86:99:1723,0,1086,1837,1230,3068:21,17,28,20 20 10024108 . G . . END=10024282 GT:DP:GQ:MIN_DP:PL 0/0:90:99:57:0,120,1800 20 10024283 . C . . END=10024283 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1777 20 10024284 . T . . END=10024287 GT:DP:GQ:MIN_DP:PL 0/0:71:99:65:0,120,1800 @@ -703,7 +703,7 @@ 20 10024297 . T . . END=10024297 GT:DP:GQ:MIN_DP:PL 0/0:68:65:68:0,65,2188 20 10024298 . T . . END=10024298 GT:DP:GQ:MIN_DP:PL 0/0:66:59:66:0,59,2080 20 10024299 . C . . END=10024299 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1480 -20 10024300 . CTT C,CT,CTTTT, 87.76 . BaseQRankSum=2.446;DP=50;ExcessHet=3.0103;MLEAC=1,0,1,0;MLEAF=0.500,0.00,0.500,0.00;MQRankSum=-0.600;RAW_MQ=134695.00;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 1/3:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 +20 10024300 . CTT C,CT,CTTTT, 87.76 . BaseQRankSum=2.446;DP=50;ExcessHet=3.0103;MLEAC=1,0,1,0;MLEAF=0.500,0.00,0.500,0.00;MQRankSum=-0.600;RAW_MQandDP=134695,50;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 1/3:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 20 10024303 . T . . END=10024303 GT:DP:GQ:MIN_DP:PL 0/0:67:57:67:0,57,855 20 10024304 . T . . END=10024307 GT:DP:GQ:MIN_DP:PL 0/0:69:63:68:0,63,945 20 10024308 . T . . END=10024310 GT:DP:GQ:MIN_DP:PL 0/0:70:78:70:0,78,1170 @@ -718,41 +718,41 @@ 20 10024325 . G . . END=10024325 GT:DP:GQ:MIN_DP:PL 0/0:47:33:47:0,33,1611 20 10024326 . A . . END=10024326 GT:DP:GQ:MIN_DP:PL 0/0:44:58:44:0,58,1605 20 10024327 . G . . END=10026356 GT:DP:GQ:MIN_DP:PL 0/0:79:99:39:0,105,1509 -20 10026357 . T C, 1166.77 . BaseQRankSum=-1.700;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.148;RAW_MQ=215117.00;ReadPosRankSum=-0.076 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 +20 10026357 . T C, 1166.77 . BaseQRankSum=-1.700;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.148;RAW_MQandDP=215117,63;ReadPosRankSum=-0.076 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 20 10026358 . A . . END=10026793 GT:DP:GQ:MIN_DP:PL 0/0:72:99:41:0,102,1530 -20 10026794 . C T, 1084.77 . BaseQRankSum=2.828;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.719;RAW_MQ=184441.00;ReadPosRankSum=-0.533 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 +20 10026794 . C T, 1084.77 . BaseQRankSum=2.828;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.719;RAW_MQandDP=184441,52;ReadPosRankSum=-0.533 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 20 10026795 . G . . END=10027233 GT:DP:GQ:MIN_DP:PL 0/0:70:99:52:0,115,1800 -20 10027234 . A ATTAG, 1320.73 . BaseQRankSum=-0.406;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.845;RAW_MQ=236651.00;ReadPosRankSum=-0.979 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 +20 10027234 . A ATTAG, 1320.73 . BaseQRankSum=-0.406;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.845;RAW_MQandDP=236651,72;ReadPosRankSum=-0.979 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 20 10027235 . T . . END=10027867 GT:DP:GQ:MIN_DP:PL 0/0:78:99:56:0,120,1800 -20 10027868 . A G, 1739.77 . BaseQRankSum=-5.793;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.032;RAW_MQ=314882.00;ReadPosRankSum=1.872 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 +20 10027868 . A G, 1739.77 . BaseQRankSum=-5.793;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.032;RAW_MQandDP=314882,89;ReadPosRankSum=1.872 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 20 10027869 . A . . END=10027871 GT:DP:GQ:MIN_DP:PL 0/0:86:99:85:0,120,1800 -20 10027872 . A G, 1724.77 . BaseQRankSum=-5.491;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.101;RAW_MQ=300482.00;ReadPosRankSum=1.053 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 +20 10027872 . A G, 1724.77 . BaseQRankSum=-5.491;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.101;RAW_MQandDP=300482,85;ReadPosRankSum=1.053 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 20 10027873 . G . . END=10028866 GT:DP:GQ:MIN_DP:PL 0/0:80:99:55:0,120,1800 -20 10028867 . A ATG, 1106.73 . BaseQRankSum=-0.874;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.711;RAW_MQ=338841.00;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL:SB 0/1:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 +20 10028867 . A ATG, 1106.73 . BaseQRankSum=-0.874;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.711;RAW_MQandDP=338841,92;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL:SB 0/1:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 20 10028868 . T . . END=10030187 GT:DP:GQ:MIN_DP:PL 0/0:80:99:60:0,120,1800 -20 10030188 . T A, 1372.77 . BaseQRankSum=0.711;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.013;RAW_MQ=288841.00;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL:SB 0/1:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 +20 10030188 . T A, 1372.77 . BaseQRankSum=0.711;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.013;RAW_MQandDP=288841,81;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL:SB 0/1:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 20 10030189 . G . . END=10030566 GT:DP:GQ:MIN_DP:PL 0/0:71:99:41:0,103,1575 20 10030567 . G . . END=10030567 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1511 20 10030568 . C . . END=10031253 GT:DP:GQ:MIN_DP:PL 0/0:70:99:42:0,114,1710 -20 10031254 . A AT, 1463.73 . BaseQRankSum=-0.091;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.017;RAW_MQ=309510.00;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL:SB 0/1:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 +20 10031254 . A AT, 1463.73 . BaseQRankSum=-0.091;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.017;RAW_MQandDP=309510,87;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL:SB 0/1:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 20 10031255 . T . . END=10031341 GT:DP:GQ:MIN_DP:PL 0/0:95:99:86:0,120,1800 -20 10031342 . G A, 1834.77 . BaseQRankSum=1.833;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQ=332041.00;ReadPosRankSum=-0.012 GT:AD:DP:GQ:PL:SB 0/1:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 +20 10031342 . G A, 1834.77 . BaseQRankSum=1.833;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQandDP=332041,93;ReadPosRankSum=-0.012 GT:AD:DP:GQ:PL:SB 0/1:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 20 10031343 . A . . END=10031797 GT:DP:GQ:MIN_DP:PL 0/0:91:99:66:0,120,1800 -20 10031798 . G A, 4296.77 . DP=104;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=369410.00 GT:AD:DP:GQ:PL:SB 1/1:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 +20 10031798 . G A, 4296.77 . DP=104;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=369410,104 GT:AD:DP:GQ:PL:SB 1/1:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 20 10031799 . T . . END=10031826 GT:DP:GQ:MIN_DP:PL 0/0:105:99:101:0,120,1800 -20 10031827 . C T, 2004.77 . BaseQRankSum=3.552;DP=108;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.945;RAW_MQ=386569.00;ReadPosRankSum=-1.396 GT:AD:DP:GQ:PL:SB 0/1:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 +20 10031827 . C T, 2004.77 . BaseQRankSum=3.552;DP=108;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.945;RAW_MQandDP=386569,108;ReadPosRankSum=-1.396 GT:AD:DP:GQ:PL:SB 0/1:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 20 10031828 . T . . END=10032093 GT:DP:GQ:MIN_DP:PL 0/0:102:99:83:0,120,1800 -20 10032094 . G A, 1220.77 . BaseQRankSum=5.488;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=298800.00;ReadPosRankSum=-0.579 GT:AD:DP:GQ:PL:SB 0/1:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 +20 10032094 . G A, 1220.77 . BaseQRankSum=5.488;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=298800,83;ReadPosRankSum=-0.579 GT:AD:DP:GQ:PL:SB 0/1:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 20 10032095 . T . . END=10032412 GT:DP:GQ:MIN_DP:PL 0/0:84:99:64:0,120,1800 -20 10032413 . T G, 869.77 . BaseQRankSum=-6.142;DP=66;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.065;RAW_MQ=233138.00;ReadPosRankSum=-1.003 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 +20 10032413 . T G, 869.77 . BaseQRankSum=-6.142;DP=66;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.065;RAW_MQandDP=233138,66;ReadPosRankSum=-1.003 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 20 10032414 . T . . END=10032881 GT:DP:GQ:MIN_DP:PL 0/0:70:99:55:0,120,1800 -20 10032882 . A T, 1202.77 . BaseQRankSum=-3.697;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.014;RAW_MQ=267241.00;ReadPosRankSum=0.626 GT:AD:DP:GQ:PL:SB 0/1:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 +20 10032882 . A T, 1202.77 . BaseQRankSum=-3.697;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.014;RAW_MQandDP=267241,75;ReadPosRankSum=0.626 GT:AD:DP:GQ:PL:SB 0/1:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 20 10032883 . A . . END=10032971 GT:DP:GQ:MIN_DP:PL 0/0:67:99:61:0,120,1800 -20 10032972 . C CAT, 1122.73 . BaseQRankSum=-0.354;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.017;RAW_MQ=231241.00;ReadPosRankSum=-1.232 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 +20 10032972 . C CAT, 1122.73 . BaseQRankSum=-0.354;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.017;RAW_MQandDP=231241,65;ReadPosRankSum=-1.232 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 20 10032973 . T . . END=10033636 GT:DP:GQ:MIN_DP:PL 0/0:78:99:50:0,120,1800 20 10033637 . C . . END=10033637 GT:DP:GQ:MIN_DP:PL 0/0:58:97:58:0,97,2210 20 10033638 . C . . END=10034305 GT:DP:GQ:MIN_DP:PL 0/0:85:99:53:0,120,1800 -20 10034306 . T C, 782.77 . BaseQRankSum=-3.661;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.150;RAW_MQ=268610.00;ReadPosRankSum=0.539 GT:AD:DP:GQ:PL:SB 0/1:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 +20 10034306 . T C, 782.77 . BaseQRankSum=-3.661;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.150;RAW_MQandDP=268610,76;ReadPosRankSum=0.539 GT:AD:DP:GQ:PL:SB 0/1:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 20 10034307 . T . . END=10036106 GT:DP:GQ:MIN_DP:PL 0/0:79:99:55:0,120,1800 20 10036107 . T . . END=10036107 GT:DP:GQ:MIN_DP:PL 0/0:67:1:67:0,1,1807 20 10036108 . C . . END=10036140 GT:DP:GQ:MIN_DP:PL 0/0:53:99:41:0,102,1504 @@ -766,7 +766,7 @@ 20 10036158 . T . . END=10036160 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,117,1755 20 10036161 . T . . END=10036161 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1514 20 10036162 . G . . END=10036929 GT:DP:GQ:MIN_DP:PL 0/0:76:99:43:0,113,1513 -20 10036930 . CGATAGCCCTAGCCCTAGATA C, 1036.73 . BaseQRankSum=0.200;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.048;RAW_MQ=274847.00;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL:SB 0/1:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 +20 10036930 . CGATAGCCCTAGCCCTAGATA C, 1036.73 . BaseQRankSum=0.200;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.048;RAW_MQandDP=274847,93;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL:SB 0/1:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 20 10036951 . G . . END=10036956 GT:DP:GQ:MIN_DP:PL 0/0:74:99:70:0,120,1800 20 10036957 . C . . END=10036957 GT:DP:GQ:MIN_DP:PL 0/0:70:37:70:0,37,2472 20 10036958 . C . . END=10036958 GT:DP:GQ:MIN_DP:PL 0/0:70:40:70:0,40,2490 @@ -781,11 +781,11 @@ 20 10036967 . G . . END=10036967 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 20 10036968 . A . . END=10036968 GT:DP:GQ:MIN_DP:PL 0/0:74:64:74:0,64,2707 20 10036969 . T . . END=10037036 GT:DP:GQ:MIN_DP:PL 0/0:87:99:72:0,107,1800 -20 10037037 . C T, 1436.77 . BaseQRankSum=3.504;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.193;RAW_MQ=293262.00;ReadPosRankSum=-1.609 GT:AD:DP:GQ:PL:SB 0/1:39,42,0:81:99:1465,0,1124,1580,1251,2831:28,11,28,14 +20 10037037 . C T, 1436.77 . BaseQRankSum=3.504;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.193;RAW_MQandDP=293262,81;ReadPosRankSum=-1.609 GT:AD:DP:GQ:PL:SB 0/1:39,42,0:81:99:1465,0,1124,1580,1251,2831:28,11,28,14 20 10037038 . G . . END=10037109 GT:DP:GQ:MIN_DP:PL 0/0:88:99:75:0,120,1800 -20 10037110 . T TGATA, 2780.73 . DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=240219.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 +20 10037110 . T TGATA, 2780.73 . DP=74;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=240219,74 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 20 10037111 . G . . END=10037143 GT:DP:GQ:MIN_DP:PL 0/0:77:99:68:0,120,1800 -20 10037144 . T TGATAGATA, 1823.73 . DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=187352.00 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1861,127,0,1864,129,1866:0,0,15,21 +20 10037144 . T TGATAGATA, 1823.73 . DP=70;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=187352,70 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1861,127,0,1864,129,1866:0,0,15,21 20 10037145 . G . . END=10037186 GT:DP:GQ:MIN_DP:PL 0/0:70:99:65:0,111,1665 20 10037187 . G . . END=10037187 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,2259 20 10037188 . A . . END=10037188 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 @@ -796,40 +796,40 @@ 20 10037194 . T . . END=10037196 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,101,1800 20 10037197 . A . . END=10037198 GT:DP:GQ:MIN_DP:PL 0/0:69:86:68:0,86,2535 20 10037199 . A . . END=10037708 GT:DP:GQ:MIN_DP:PL 0/0:71:99:49:0,120,1800 -20 10037709 . A T, 1003.77 . BaseQRankSum=-2.367;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.934;RAW_MQ=252841.00;ReadPosRankSum=0.040 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 +20 10037709 . A T, 1003.77 . BaseQRankSum=-2.367;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.934;RAW_MQandDP=252841,71;ReadPosRankSum=0.040 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 20 10037710 . A . . END=10038582 GT:DP:GQ:MIN_DP:PL 0/0:71:99:54:0,120,1800 20 10038583 . C . . END=10038583 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1806 20 10038584 . A . . END=10039370 GT:DP:GQ:MIN_DP:PL 0/0:76:99:54:0,120,1800 -20 10039371 . T G, 1324.77 . BaseQRankSum=-3.260;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=266400.00;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 +20 10039371 . T G, 1324.77 . BaseQRankSum=-3.260;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=266400,74;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 20 10039372 . T . . END=10040770 GT:DP:GQ:MIN_DP:PL 0/0:76:99:56:0,120,1800 20 10040771 . T . . END=10040771 GT:DP:GQ:MIN_DP:PL 0/0:81:60:81:0,60,2763 -20 10040772 . C CT, 1995.73 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=211048.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2033,210,0,2034,210,2034:0,0,37,33 +20 10040772 . C CT, 1995.73 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=211048,79 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2033,210,0,2034,210,2034:0,0,37,33 20 10040773 . T . . END=10040811 GT:DP:GQ:MIN_DP:PL 0/0:77:99:75:0,120,1800 -20 10040812 . AT A, 2607.73 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=203299.00 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 +20 10040812 . AT A, 2607.73 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=203299,79 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 20 10040814 . T . . END=10040820 GT:DP:GQ:MIN_DP:PL 0/0:78:99:77:0,120,1800 -20 10040821 . T A, 1171.77 . BaseQRankSum=-0.021;DP=78;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.097;RAW_MQ=199699.00;ReadPosRankSum=-1.385 GT:AD:DP:GQ:PL:SB 0/1:38,40,0:78:99:1200,0,1099,1314,1219,2533:20,18,21,19 +20 10040821 . T A, 1171.77 . BaseQRankSum=-0.021;DP=78;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.097;RAW_MQandDP=199699,78;ReadPosRankSum=-1.385 GT:AD:DP:GQ:PL:SB 0/1:38,40,0:78:99:1200,0,1099,1314,1219,2533:20,18,21,19 20 10040822 . A . . END=10041303 GT:DP:GQ:MIN_DP:PL 0/0:71:99:54:0,119,1800 -20 10041304 . C T, 2765.77 . DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=239810.00 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 +20 10041304 . C T, 2765.77 . DP=68;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=239810,68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 20 10041305 . G . . END=10041697 GT:DP:GQ:MIN_DP:PL 0/0:62:99:48:0,120,1800 -20 10041698 . C CAT, 0.04 . BaseQRankSum=1.887;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.844;RAW_MQ=265497.00;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB 0/1:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 +20 10041698 . C CAT, 0.04 . BaseQRankSum=1.887;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.844;RAW_MQandDP=265497,74;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB 0/1:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 20 10041699 . A . . END=10041700 GT:DP:GQ:MIN_DP:PL 0/0:79:99:78:0,120,1800 -20 10041701 . A ATG,ATATG, 1403.73 . BaseQRankSum=0.848;DP=78;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.340;RAW_MQ=270590.00;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/2:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 +20 10041701 . A ATG,ATATG, 1403.73 . BaseQRankSum=0.848;DP=78;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.340;RAW_MQandDP=270590,78;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL:SB 0/2:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 20 10041702 . T . . END=10042318 GT:DP:GQ:MIN_DP:PL 0/0:64:99:49:0,117,1800 -20 10042319 . C T, 2658.77 . DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=229851.00 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 +20 10042319 . C T, 2658.77 . DP=66;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=229851,66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 20 10042320 . C . . END=10042760 GT:DP:GQ:MIN_DP:PL 0/0:74:99:60:0,120,1800 -20 10042761 . A G, 3553.77 . DP=91;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=327600.00 GT:AD:DP:GQ:PL:SB 1/1:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 +20 10042761 . A G, 3553.77 . DP=91;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=327600,91 GT:AD:DP:GQ:PL:SB 1/1:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 20 10042762 . G . . END=10042828 GT:DP:GQ:MIN_DP:PL 0/0:90:99:78:0,120,1800 -20 10042829 . A G, 3055.77 . DP=78;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=278569.00 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 +20 10042829 . A G, 3055.77 . DP=78;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=278569,78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 20 10042830 . C . . END=10043001 GT:DP:GQ:MIN_DP:PL 0/0:65:99:56:0,120,1800 -20 10043002 . A T, 1287.77 . BaseQRankSum=3.986;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=309600.00;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:48,38,0:86:99:1316,0,1659,1460,1773,3233:19,29,18,20 +20 10043002 . A T, 1287.77 . BaseQRankSum=3.986;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=309600,86;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:48,38,0:86:99:1316,0,1659,1460,1773,3233:19,29,18,20 20 10043003 . C . . END=10044848 GT:DP:GQ:MIN_DP:PL 0/0:78:99:44:0,104,1655 -20 10044849 . A G, 2091.77 . DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=209641.00 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2120,177,0,2120,177,2120:0,0,22,37 +20 10044849 . A G, 2091.77 . DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=209641,59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2120,177,0,2120,177,2120:0,0,22,37 20 10044850 . C . . END=10045077 GT:DP:GQ:MIN_DP:PL 0/0:69:99:56:0,120,1800 -20 10045078 . G T, 3271.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=279389.00 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3300,244,0,3300,244,3300:0,0,37,44 +20 10045078 . G T, 3271.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=279389,81 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3300,244,0,3300,244,3300:0,0,37,44 20 10045079 . C . . END=10045641 GT:DP:GQ:MIN_DP:PL 0/0:71:99:60:0,120,1800 -20 10045642 . G C, 3107.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=286610.00 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 +20 10045642 . G C, 3107.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=286610,81 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 20 10045643 . A . . END=10046177 GT:DP:GQ:MIN_DP:PL 0/0:79:99:58:0,120,1800 -20 10046178 . AAGAAAGAAAG A, 2159.73 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=140545.00 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 +20 10046178 . AAGAAAGAAAG A, 2159.73 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140545,61 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 20 10046189 . A . . END=10046435 GT:DP:GQ:MIN_DP:PL 0/0:67:99:52:0,108,1620 20 10046436 . A . . END=10046438 GT:DP:GQ:MIN_DP:PL 0/0:68:96:65:0,96,1440 20 10046439 . G . . END=10046439 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,99,1485 @@ -851,7 +851,7 @@ 20 10046485 . G . . END=10046491 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1440 20 10046492 . T . . END=10046492 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1478 20 10046493 . T . . END=10046536 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,108,1620 -20 10046537 . A G, 819.77 . BaseQRankSum=-3.909;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.395;RAW_MQ=169333.00;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:848,0,902,932,988,1920:13,15,10,19 +20 10046537 . A G, 819.77 . BaseQRankSum=-3.909;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.395;RAW_MQandDP=169333,57;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:848,0,902,932,988,1920:13,15,10,19 20 10046538 . T . . END=10046635 GT:DP:GQ:MIN_DP:PL 0/0:57:99:46:0,99,1620 20 10046636 . T . . END=10046636 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1722 20 10046637 . T . . END=10046637 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,104,1719 @@ -859,15 +859,15 @@ 20 10046639 . T . . END=10050160 GT:DP:GQ:MIN_DP:PL 0/0:78:99:43:0,101,1614 20 10050161 . A . . END=10050161 GT:DP:GQ:MIN_DP:PL 0/0:68:75:68:0,75,2271 20 10050162 . C . . END=10050827 GT:DP:GQ:MIN_DP:PL 0/0:78:99:52:0,120,1800 -20 10050828 . T C, 1227.77 . BaseQRankSum=-2.704;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.892;RAW_MQ=306841.00;ReadPosRankSum=-0.140 GT:AD:DP:GQ:PL:SB 0/1:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 +20 10050828 . T C, 1227.77 . BaseQRankSum=-2.704;DP=86;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.892;RAW_MQandDP=306841,86;ReadPosRankSum=-0.140 GT:AD:DP:GQ:PL:SB 0/1:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 20 10050829 . T . . END=10051447 GT:DP:GQ:MIN_DP:PL 0/0:68:99:40:0,99,1485 -20 10051448 . T C, 1134.77 . BaseQRankSum=-0.501;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.404;RAW_MQ=247010.00;ReadPosRankSum=-0.705 GT:AD:DP:GQ:PL:SB 0/1:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 +20 10051448 . T C, 1134.77 . BaseQRankSum=-0.501;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.404;RAW_MQandDP=247010,70;ReadPosRankSum=-0.705 GT:AD:DP:GQ:PL:SB 0/1:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 20 10051449 . T . . END=10052687 GT:DP:GQ:MIN_DP:PL 0/0:82:99:55:0,114,1800 -20 10052688 . C A, 1062.77 . BaseQRankSum=0.180;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.870;RAW_MQ=274969.00;ReadPosRankSum=1.443 GT:AD:DP:GQ:PL:SB 0/1:45,32,0:77:99:1091,0,1645,1226,1741,2967:27,18,16,16 +20 10052688 . C A, 1062.77 . BaseQRankSum=0.180;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.870;RAW_MQandDP=274969,77;ReadPosRankSum=1.443 GT:AD:DP:GQ:PL:SB 0/1:45,32,0:77:99:1091,0,1645,1226,1741,2967:27,18,16,16 20 10052689 . A . . END=10058021 GT:DP:GQ:MIN_DP:PL 0/0:74:99:36:0,99,1485 -20 10058022 . T C, 975.77 . BaseQRankSum=-2.346;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.466;RAW_MQ=237579.00;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:1004,0,1261,1112,1357,2469:16,20,13,19 +20 10058022 . T C, 975.77 . BaseQRankSum=-2.346;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.466;RAW_MQandDP=237579,68;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:1004,0,1261,1112,1357,2469:16,20,13,19 20 10058023 . A . . END=10062934 GT:DP:GQ:MIN_DP:PL 0/0:76:99:46:0,105,1575 -20 10062935 . CAAA C,CA,CAA,CAAAA, 92.84 . BaseQRankSum=1.336;DP=79;ExcessHet=3.0103;MLEAC=0,0,0,1,0;MLEAF=0.00,0.00,0.00,0.500,0.00;MQRankSum=-1.405;RAW_MQ=232368.00;ReadPosRankSum=-0.986 GT:AD:DP:GQ:PL:SB 0/4:5,2,2,4,10,0:23:16:130,219,1823,163,1171,1044,115,628,576,505,0,158,82,16,101,243,986,887,608,171,888:2,3,9,9 +20 10062935 . CAAA C,CA,CAA,CAAAA, 92.84 . BaseQRankSum=1.336;DP=79;ExcessHet=3.0103;MLEAC=0,0,0,1,0;MLEAF=0.00,0.00,0.00,0.500,0.00;MQRankSum=-1.405;RAW_MQandDP=232368,79;ReadPosRankSum=-0.986 GT:AD:DP:GQ:PL:SB 0/4:5,2,2,4,10,0:23:16:130,219,1823,163,1171,1044,115,628,576,505,0,158,82,16,101,243,986,887,608,171,888:2,3,9,9 20 10062939 . A . . END=10062955 GT:DP:GQ:MIN_DP:PL 0/0:82:99:74:0,120,1800 20 10062956 . T . . END=10062956 GT:DP:GQ:MIN_DP:PL 0/0:69:80:69:0,80,2241 20 10062957 . C . . END=10065775 GT:DP:GQ:MIN_DP:PL 0/0:70:99:42:0,105,1575 @@ -881,15 +881,15 @@ 20 10065803 . G . . END=10065803 GT:DP:GQ:MIN_DP:PL 0/0:59:81:59:0,81,2051 20 10065804 . C . . END=10067046 GT:DP:GQ:MIN_DP:PL 0/0:72:99:48:0,102,1530 20 10067047 . A . . END=10067048 GT:DP:GQ:MIN_DP:PL 0/0:51:96:50:0,96,1440 -20 10067049 . TAAAAAAAAA T,TA,TAA, 613.73 . BaseQRankSum=0.177;DP=69;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.342;RAW_MQ=204256.00;ReadPosRankSum=-1.322 GT:AD:DP:GQ:PL:SB 2/3:2,4,7,9,0:22:99:651,365,925,164,381,340,135,101,0,106,443,591,394,170,627:1,1,12,8 +20 10067049 . TAAAAAAAAA T,TA,TAA, 613.73 . BaseQRankSum=0.177;DP=69;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.342;RAW_MQandDP=204256,69;ReadPosRankSum=-1.322 GT:AD:DP:GQ:PL:SB 2/3:2,4,7,9,0:22:99:651,365,925,164,381,340,135,101,0,106,443,591,394,170,627:1,1,12,8 20 10067059 . A . . END=10067067 GT:DP:GQ:MIN_DP:PL 0/0:57:99:50:0,99,1485 20 10067068 . A . . END=10067070 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 20 10067071 . A . . END=10067089 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,102,1530 -20 10067090 . C A, 2004.77 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=165948.00 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 +20 10067090 . C A, 2004.77 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=165948,55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 20 10067091 . T . . END=10067263 GT:DP:GQ:MIN_DP:PL 0/0:76:99:50:0,120,1800 -20 10067264 . G A, 2922.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=257282.00 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 +20 10067264 . G A, 2922.77 . DP=73;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=257282,73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 20 10067265 . C . . END=10067721 GT:DP:GQ:MIN_DP:PL 0/0:73:99:52:0,117,1800 -20 10067722 . A C, 2146.77 . DP=54;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=194400.00 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 +20 10067722 . A C, 2146.77 . DP=54;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=194400,54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 20 10067723 . C . . END=10068009 GT:DP:GQ:MIN_DP:PL 0/0:57:99:39:0,99,1485 20 10068010 . T . . END=10068014 GT:DP:GQ:MIN_DP:PL 0/0:39:90:38:0,90,1350 20 10068015 . T . . END=10068019 GT:DP:GQ:MIN_DP:PL 0/0:37:84:34:0,84,1260 @@ -907,8 +907,8 @@ 20 10068149 . T . . END=10068150 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,1125 20 10068151 . A . . END=10068155 GT:DP:GQ:MIN_DP:PL 0/0:29:63:28:0,63,945 20 10068156 . A . . END=10068157 GT:DP:GQ:MIN_DP:PL 0/0:27:57:27:0,57,855 -20 10068158 . GTGTATATATATA G, 66.73 . BaseQRankSum=-0.652;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.328;RAW_MQ=93364.00;ReadPosRankSum=0.524 GT:AD:DP:GQ:PL:SB 0/1:3,4,0:7:57:104,0,57,114,69,183:0,3,2,2 -20 10068160 . GTATATATATATGTA G,*, 697.73 . DP=28;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQ=87005.00 GT:AD:DP:GQ:PL:SB 1/2:0,2,4,0:6:53:735,162,131,102,0,53,507,174,108,472:0,0,2,4 +20 10068158 . GTGTATATATATA G, 66.73 . BaseQRankSum=-0.652;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.328;RAW_MQandDP=93364,29;ReadPosRankSum=0.524 GT:AD:DP:GQ:PL:SB 0/1:3,4,0:7:57:104,0,57,114,69,183:0,3,2,2 +20 10068160 . GTATATATATATGTA G,*, 697.73 . DP=28;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=87005,28 GT:AD:DP:GQ:PL:SB 1/2:0,2,4,0:6:53:735,162,131,102,0,53,507,174,108,472:0,0,2,4 20 10068175 . T . . END=10068175 GT:DP:GQ:MIN_DP:PL 0/0:20:18:20:0,18,270 20 10068176 . A . . END=10068180 GT:DP:GQ:MIN_DP:PL 0/0:19:24:17:0,24,360 20 10068181 . T . . END=10068185 GT:DP:GQ:MIN_DP:PL 0/0:16:27:16:0,27,405 @@ -953,67 +953,67 @@ 20 10068371 . G . . END=10068737 GT:DP:GQ:MIN_DP:PL 0/0:54:99:40:0,105,1575 20 10068738 . C . . END=10068738 GT:DP:GQ:MIN_DP:PL 0/0:60:98:60:0,98,2062 20 10068739 . A . . END=10068980 GT:DP:GQ:MIN_DP:PL 0/0:76:99:53:0,120,1800 -20 10068981 . G A, 2503.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=219600.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 +20 10068981 . G A, 2503.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=219600,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 20 10068982 . A . . END=10070601 GT:DP:GQ:MIN_DP:PL 0/0:74:99:46:0,120,1800 -20 10070602 . T C, 2691.77 . DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=248164.00 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 +20 10070602 . T C, 2691.77 . DP=72;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=248164,72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 20 10070603 . A . . END=10070935 GT:DP:GQ:MIN_DP:PL 0/0:90:99:66:0,120,1800 -20 10070936 . T A, 3631.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=279633.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 +20 10070936 . T A, 3631.77 . DP=81;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=279633,81 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 20 10070937 . A . . END=10070937 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 -20 10070938 . G GA, 3656.73 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=275964.00 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 +20 10070938 . G GA, 3656.73 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=275964,79 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 20 10070939 . A . . END=10071134 GT:DP:GQ:MIN_DP:PL 0/0:77:99:67:0,120,1800 -20 10071135 . C T, 3257.77 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=276123.00 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 +20 10071135 . C T, 3257.77 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=276123,79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 20 10071136 . T . . END=10071186 GT:DP:GQ:MIN_DP:PL 0/0:83:99:77:0,120,1800 -20 10071187 . G A, 3410.77 . DP=82;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=292441.00 GT:AD:DP:GQ:PL:SB 1/1:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 +20 10071187 . G A, 3410.77 . DP=82;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=292441,82 GT:AD:DP:GQ:PL:SB 1/1:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 20 10071188 . G . . END=10071889 GT:DP:GQ:MIN_DP:PL 0/0:61:99:44:0,111,1710 -20 10071890 . T C, 1974.77 . DP=57;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=202969.00 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 +20 10071890 . T C, 1974.77 . DP=57;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=202969,57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 20 10071891 . G . . END=10072504 GT:DP:GQ:MIN_DP:PL 0/0:65:99:51:0,120,1800 -20 10072505 . A G, 2099.77 . DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=230400.00 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 +20 10072505 . A G, 2099.77 . DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=230400,64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 20 10072506 . C . . END=10074186 GT:DP:GQ:MIN_DP:PL 0/0:71:99:40:0,102,1530 -20 10074187 . A G, 3101.77 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=276123.00 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 +20 10074187 . A G, 3101.77 . DP=79;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=276123,79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 20 10074188 . T . . END=10074239 GT:DP:GQ:MIN_DP:PL 0/0:80:99:71:0,120,1800 -20 10074240 . T C, 3406.77 . DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=307369.00 GT:AD:DP:GQ:PL:SB 1/1:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 +20 10074240 . T C, 3406.77 . DP=86;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=307369,86 GT:AD:DP:GQ:PL:SB 1/1:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 20 10074241 . A . . END=10074667 GT:DP:GQ:MIN_DP:PL 0/0:74:99:41:0,105,1544 20 10074668 . C . . END=10074668 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 20 10074669 . A . . END=10074675 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,99,1485 20 10074676 . A . . END=10074676 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 20 10074677 . G . . END=10074715 GT:DP:GQ:MIN_DP:PL 0/0:61:99:41:0,99,1485 -20 10074716 . G A, 2400.77 . DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=227641.00 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 +20 10074716 . G A, 2400.77 . DP=64;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=227641,64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 20 10074717 . C . . END=10074805 GT:DP:GQ:MIN_DP:PL 0/0:72:99:66:0,120,1800 -20 10074806 . G A, 2817.77 . DP=71;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=250077.00 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 +20 10074806 . G A, 2817.77 . DP=71;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=250077,71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 20 10074807 . C . . END=10075042 GT:DP:GQ:MIN_DP:PL 0/0:68:99:56:0,120,1800 -20 10075043 . T C, 2405.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=216841.00 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 +20 10075043 . T C, 2405.77 . DP=61;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=216841,61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 20 10075044 . C . . END=10075141 GT:DP:GQ:MIN_DP:PL 0/0:55:99:51:0,120,1800 20 10075142 . G . . END=10075142 GT:DP:GQ:MIN_DP:PL 0/0:65:91:65:0,91,2199 20 10075143 . A . . END=10075167 GT:DP:GQ:MIN_DP:PL 0/0:81:99:68:0,120,1800 -20 10075168 . C T, 3612.77 . DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=309981.00 GT:AD:DP:GQ:PL:SB 1/1:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 +20 10075168 . C T, 3612.77 . DP=88;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=309981,88 GT:AD:DP:GQ:PL:SB 1/1:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 20 10075169 . G . . END=10075507 GT:DP:GQ:MIN_DP:PL 0/0:68:99:49:0,119,1800 -20 10075508 . GA G, 1928.73 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=288121.00 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 +20 10075508 . GA G, 1928.73 . DP=77;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=288121,77 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 20 10075510 . A . . END=10076249 GT:DP:GQ:MIN_DP:PL 0/0:76:99:55:0,120,1800 -20 10076250 . A G, 1107.77 . BaseQRankSum=-3.386;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.423;RAW_MQ=278666.00;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL:SB 0/1:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 +20 10076250 . A G, 1107.77 . BaseQRankSum=-3.386;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.423;RAW_MQandDP=278666,79;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL:SB 0/1:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 20 10076251 . A . . END=10076338 GT:DP:GQ:MIN_DP:PL 0/0:70:99:62:0,120,1800 -20 10076339 . A G, 1309.77 . BaseQRankSum=-0.069;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQ=256441.00;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 +20 10076339 . A G, 1309.77 . BaseQRankSum=-0.069;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.866;RAW_MQandDP=256441,72;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 20 10076340 . A . . END=10076398 GT:DP:GQ:MIN_DP:PL 0/0:88:99:71:0,120,1800 -20 10076399 . G A, 1807.77 . BaseQRankSum=4.154;DP=94;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=338400.00;ReadPosRankSum=-1.058 GT:AD:DP:GQ:PL:SB 0/1:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 +20 10076399 . G A, 1807.77 . BaseQRankSum=4.154;DP=94;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=338400,94;ReadPosRankSum=-1.058 GT:AD:DP:GQ:PL:SB 0/1:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 20 10076400 . G . . END=10076988 GT:DP:GQ:MIN_DP:PL 0/0:73:99:51:0,120,1800 -20 10076989 . CAA C,CA,CAAA, 214.73 . BaseQRankSum=-0.625;DP=75;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.473;RAW_MQ=253446.00;ReadPosRankSum=-0.918 GT:AD:DP:GQ:PL:SB 2/3:7,3,13,7,0:30:41:252,271,1146,41,448,376,147,276,0,361,322,712,423,318,705:4,3,12,11 +20 10076989 . CAA C,CA,CAAA, 214.73 . BaseQRankSum=-0.625;DP=75;ExcessHet=3.0103;MLEAC=0,1,1,0;MLEAF=0.00,0.500,0.500,0.00;MQRankSum=-0.473;RAW_MQandDP=253446,75;ReadPosRankSum=-0.918 GT:AD:DP:GQ:PL:SB 2/3:7,3,13,7,0:30:41:252,271,1146,41,448,376,147,276,0,361,322,712,423,318,705:4,3,12,11 20 10076992 . A . . END=10077007 GT:DP:GQ:MIN_DP:PL 0/0:69:99:59:0,120,1800 -20 10077008 . T A, 0 . BaseQRankSum=-1.806;DP=51;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.608;RAW_MQ=175323.00;ReadPosRankSum=0.805 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 +20 10077008 . T A, 0 . BaseQRankSum=-1.806;DP=51;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.608;RAW_MQandDP=175323,51;ReadPosRankSum=0.805 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 20 10077009 . A . . END=10077009 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 -20 10077010 . G A, 0 . BaseQRankSum=-1.841;DP=53;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.658;RAW_MQ=182523.00;ReadPosRankSum=0.911 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 +20 10077010 . G A, 0 . BaseQRankSum=-1.841;DP=53;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-1.658;RAW_MQandDP=182523,53;ReadPosRankSum=0.911 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 20 10077011 . A . . END=10077751 GT:DP:GQ:MIN_DP:PL 0/0:69:99:44:0,102,1654 -20 10077752 . T C, 1345.77 . BaseQRankSum=-6.503;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=284400.00;ReadPosRankSum=-0.352 GT:AD:DP:GQ:PL:SB 0/1:34,45,0:79:99:1374,0,1187,1477,1322,2799:16,18,16,29 +20 10077752 . T C, 1345.77 . BaseQRankSum=-6.503;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=284400,79;ReadPosRankSum=-0.352 GT:AD:DP:GQ:PL:SB 0/1:34,45,0:79:99:1374,0,1187,1477,1322,2799:16,18,16,29 20 10077753 . G . . END=10079475 GT:DP:GQ:MIN_DP:PL 0/0:70:99:46:0,108,1620 -20 10079476 . T G, 11.12 . BaseQRankSum=-4.570;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.826;RAW_MQ=153410.00;ReadPosRankSum=1.533 GT:AD:DP:GQ:PL:SB 0/1:33,11,0:44:39:39,0,1137,137,1166,1304:6,27,11,0 +20 10079476 . T G, 11.12 . BaseQRankSum=-4.570;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.826;RAW_MQandDP=153410,44;ReadPosRankSum=1.533 GT:AD:DP:GQ:PL:SB 0/1:33,11,0:44:39:39,0,1137,137,1166,1304:6,27,11,0 20 10079477 . A . . END=10079488 GT:DP:GQ:MIN_DP:PL 0/0:49:99:43:0,99,1485 20 10079489 . A . . END=10079489 GT:DP:GQ:MIN_DP:PL 0/0:47:84:47:0,84,1672 20 10079490 . A . . END=10081749 GT:DP:GQ:MIN_DP:PL 0/0:73:99:40:0,105,1571 -20 10081750 . C A, 1353.77 . BaseQRankSum=2.670;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=298800.00;ReadPosRankSum=-0.406 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1382,0,1525,1514,1643,3157:23,21,19,20 +20 10081750 . C A, 1353.77 . BaseQRankSum=2.670;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=298800,83;ReadPosRankSum=-0.406 GT:AD:DP:GQ:PL:SB 0/1:44,39,0:83:99:1382,0,1525,1514,1643,3157:23,21,19,20 20 10081751 . T . . END=10081799 GT:DP:GQ:MIN_DP:PL 0/0:77:99:68:0,120,1800 -20 10081800 . C T, 1109.77 . BaseQRankSum=0.241;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=244800.00;ReadPosRankSum=-2.622 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:1138,0,1222,1244,1322,2565:26,9,17,16 +20 10081800 . C T, 1109.77 . BaseQRankSum=0.241;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=244800,68;ReadPosRankSum=-2.622 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:1138,0,1222,1244,1322,2565:26,9,17,16 20 10081801 . A . . END=10082884 GT:DP:GQ:MIN_DP:PL 0/0:76:99:43:0,111,1665 20 10082885 . A . . END=10082885 GT:DP:GQ:MIN_DP:PL 0/0:43:83:43:0,83,1521 20 10082886 . C . . END=10082891 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,99,1485 -20 10082892 . C T, 1712.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQ=155641.00 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1741,132,0,1741,132,1741:0,0,20,24 +20 10082892 . C T, 1712.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=155641,44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1741,132,0,1741,132,1741:0,0,20,24 20 10082893 . C . . END=10082901 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1485 20 10082902 . C . . END=10082903 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 20 10082904 . C . . END=10082905 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 @@ -1026,43 +1026,43 @@ 20 10082926 . C . . END=10082930 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 20 10082931 . T . . END=10082931 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1443 20 10082932 . C . . END=10085210 GT:DP:GQ:MIN_DP:PL 0/0:77:99:38:0,102,1530 -20 10085211 . A T, 1210.77 . BaseQRankSum=-1.501;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.028;RAW_MQ=270841.00;ReadPosRankSum=-1.405 GT:AD:DP:GQ:PL:SB 0/1:40,36,0:76:99:1239,0,1443,1360,1551,2911:21,19,17,19 +20 10085211 . A T, 1210.77 . BaseQRankSum=-1.501;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.028;RAW_MQandDP=270841,76;ReadPosRankSum=-1.405 GT:AD:DP:GQ:PL:SB 0/1:40,36,0:76:99:1239,0,1443,1360,1551,2911:21,19,17,19 20 10085212 . G . . END=10086109 GT:DP:GQ:MIN_DP:PL 0/0:77:99:54:0,120,1800 -20 10086110 . G A, 1274.77 . BaseQRankSum=-0.343;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.680;RAW_MQ=283323.00;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL:SB 0/1:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 +20 10086110 . G A, 1274.77 . BaseQRankSum=-0.343;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.680;RAW_MQandDP=283323,81;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL:SB 0/1:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 20 10086111 . C . . END=10086282 GT:DP:GQ:MIN_DP:PL 0/0:75:99:55:0,120,1800 -20 10086283 . G T, 1025.77 . BaseQRankSum=2.304;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=302400.00;ReadPosRankSum=1.889 GT:AD:DP:GQ:PL:SB 0/1:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 +20 10086283 . G T, 1025.77 . BaseQRankSum=2.304;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=302400,84;ReadPosRankSum=1.889 GT:AD:DP:GQ:PL:SB 0/1:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 20 10086284 . G . . END=10086618 GT:DP:GQ:MIN_DP:PL 0/0:80:99:51:0,120,1800 -20 10086619 . T A, 796.77 . BaseQRankSum=0.256;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.312;RAW_MQ=249241.00;ReadPosRankSum=-0.760 GT:AD:DP:GQ:PL:SB 0/1:45,25,0:70:99:825,0,1603,961,1679,2639:18,27,9,16 +20 10086619 . T A, 796.77 . BaseQRankSum=0.256;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.312;RAW_MQandDP=249241,70;ReadPosRankSum=-0.760 GT:AD:DP:GQ:PL:SB 0/1:45,25,0:70:99:825,0,1603,961,1679,2639:18,27,9,16 20 10086620 . T . . END=10086852 GT:DP:GQ:MIN_DP:PL 0/0:81:99:65:0,120,1800 -20 10086853 . G A, 1002.77 . BaseQRankSum=3.915;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.177;RAW_MQ=257810.00;ReadPosRankSum=-0.100 GT:AD:DP:GQ:PL:SB 0/1:41,32,0:73:99:1031,0,1280,1154,1376,2530:21,20,17,15 +20 10086853 . G A, 1002.77 . BaseQRankSum=3.915;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.177;RAW_MQandDP=257810,73;ReadPosRankSum=-0.100 GT:AD:DP:GQ:PL:SB 0/1:41,32,0:73:99:1031,0,1280,1154,1376,2530:21,20,17,15 20 10086854 . T . . END=10086953 GT:DP:GQ:MIN_DP:PL 0/0:67:99:60:0,120,1800 -20 10086954 . G A, 1095.77 . BaseQRankSum=2.606;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=244800.00;ReadPosRankSum=-0.534 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 +20 10086954 . G A, 1095.77 . BaseQRankSum=2.606;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=244800,68;ReadPosRankSum=-0.534 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 20 10086955 . C . . END=10087229 GT:DP:GQ:MIN_DP:PL 0/0:70:99:55:0,120,1800 -20 10087230 . A G, 1842.77 . BaseQRankSum=-2.407;DP=96;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.707;RAW_MQ=332861.00;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL:SB 0/1:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 +20 10087230 . A G, 1842.77 . BaseQRankSum=-2.407;DP=96;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.707;RAW_MQandDP=332861,96;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL:SB 0/1:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 20 10087231 . C . . END=10087393 GT:DP:GQ:MIN_DP:PL 0/0:101:99:84:0,120,1800 -20 10087394 . T G, 1688.77 . BaseQRankSum=-2.340;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.207;RAW_MQ=299641.00;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB 0/1:35,49,0:84:99:1717,0,1186,1823,1334,3156:21,14,24,25 +20 10087394 . T G, 1688.77 . BaseQRankSum=-2.340;DP=84;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.207;RAW_MQandDP=299641,84;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB 0/1:35,49,0:84:99:1717,0,1186,1823,1334,3156:21,14,24,25 20 10087395 . T . . END=10087753 GT:DP:GQ:MIN_DP:PL 0/0:83:99:61:0,120,1800 -20 10087754 . T G, 1347.77 . BaseQRankSum=0.355;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.193;RAW_MQ=288141.00;ReadPosRankSum=-0.551 GT:AD:DP:GQ:PL:SB 0/1:37,41,0:78:99:1376,0,1239,1488,1362,2849:23,14,24,17 +20 10087754 . T G, 1347.77 . BaseQRankSum=0.355;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.193;RAW_MQandDP=288141,79;ReadPosRankSum=-0.551 GT:AD:DP:GQ:PL:SB 0/1:37,41,0:78:99:1376,0,1239,1488,1362,2849:23,14,24,17 20 10087755 . G . . END=10087803 GT:DP:GQ:MIN_DP:PL 0/0:100:99:81:0,120,1800 -20 10087804 . C T, 1619.77 . BaseQRankSum=1.940;DP=100;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.618;RAW_MQ=369310.00;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL:SB 0/1:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 +20 10087804 . C T, 1619.77 . BaseQRankSum=1.940;DP=100;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=2.618;RAW_MQandDP=369310,100;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL:SB 0/1:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 20 10087805 . G . . END=10087819 GT:DP:GQ:MIN_DP:PL 0/0:101:99:96:0,120,1800 -20 10087820 . CAG C,CAGAG, 428.73 . BaseQRankSum=-1.974;DP=99;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.422;RAW_MQ=362700.00;ReadPosRankSum=-0.357 GT:AD:DP:GQ:PL:SB 0/2:35,0,18,0:53:99:466,669,2577,0,1197,1168,661,2237,1238,2189:17,18,8,10 +20 10087820 . CAG C,CAGAG, 428.73 . BaseQRankSum=-1.974;DP=99;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.422;RAW_MQandDP=362700,99;ReadPosRankSum=-0.357 GT:AD:DP:GQ:PL:SB 0/2:35,0,18,0:53:99:466,669,2577,0,1197,1168,661,2237,1238,2189:17,18,8,10 20 10087823 . A . . END=10087841 GT:DP:GQ:MIN_DP:PL 0/0:86:99:83:0,120,1800 20 10087842 . A . . END=10087842 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,2206 20 10087843 . A . . END=10087843 GT:DP:GQ:MIN_DP:PL 0/0:82:73:82:0,73,2973 20 10087844 . G . . END=10087844 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,2190 20 10087845 . A . . END=10088062 GT:DP:GQ:MIN_DP:PL 0/0:95:99:71:0,120,1800 -20 10088063 . C T, 1417.77 . BaseQRankSum=3.405;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.515;RAW_MQ=327579.00;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL:SB 0/1:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 +20 10088063 . C T, 1417.77 . BaseQRankSum=3.405;DP=93;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.515;RAW_MQandDP=327579,93;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL:SB 0/1:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 20 10088064 . G . . END=10088698 GT:DP:GQ:MIN_DP:PL 0/0:87:99:60:0,120,1800 -20 10088699 . C T, 776.77 . BaseQRankSum=3.803;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.140;RAW_MQ=199738.00;ReadPosRankSum=-1.456 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 +20 10088699 . C T, 776.77 . BaseQRankSum=3.803;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.140;RAW_MQandDP=199738,63;ReadPosRankSum=-1.456 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 20 10088700 . G . . END=10088729 GT:DP:GQ:MIN_DP:PL 0/0:53:99:51:0,120,1800 -20 10088730 . G A, 972.77 . BaseQRankSum=0.224;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.839;RAW_MQ=148358.00;ReadPosRankSum=0.581 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 +20 10088730 . G A, 972.77 . BaseQRankSum=0.224;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.839;RAW_MQandDP=148358,52;ReadPosRankSum=0.581 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 20 10088731 . G . . END=10088735 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 -20 10088736 . A C, 1081.77 . BaseQRankSum=0.282;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.169;RAW_MQ=149682.00;ReadPosRankSum=0.573 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 +20 10088736 . A C, 1081.77 . BaseQRankSum=0.282;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.169;RAW_MQandDP=149682,55;ReadPosRankSum=0.573 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 20 10088737 . C . . END=10088746 GT:DP:GQ:MIN_DP:PL 0/0:56:99:53:0,120,1800 -20 10088747 . A G, 1111.77 . BaseQRankSum=-3.877;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.907;RAW_MQ=146239.00;ReadPosRankSum=0.009 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 +20 10088747 . A G, 1111.77 . BaseQRankSum=-3.877;DP=55;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.907;RAW_MQandDP=146239,55;ReadPosRankSum=0.009 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 20 10088748 . G . . END=10088798 GT:DP:GQ:MIN_DP:PL 0/0:49:99:46:0,114,1710 -20 10088799 . G A, 1018.77 . BaseQRankSum=5.503;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.498;RAW_MQ=150040.00;ReadPosRankSum=1.075 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 +20 10088799 . G A, 1018.77 . BaseQRankSum=5.503;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.498;RAW_MQandDP=150040,53;ReadPosRankSum=1.075 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 20 10088800 . T . . END=10088831 GT:DP:GQ:MIN_DP:PL 0/0:54:99:50:0,113,1800 20 10088832 . G . . END=10088842 GT:DP:GQ:MIN_DP:PL 0/0:53:63:36:0,63,945 20 10088843 . C . . END=10088843 GT:DP:GQ:MIN_DP:PL 0/0:25:16:25:0,16,759 @@ -1081,13 +1081,13 @@ 20 10088866 . G . . END=10088866 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 20 10088867 . A . . END=10088870 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 20 10088871 . T . . END=10088894 GT:DP:GQ:MIN_DP:PL 0/0:39:99:33:0,99,1294 -20 10088895 . C T, 532.77 . BaseQRankSum=2.462;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.577;RAW_MQ=134450.00;ReadPosRankSum=1.301 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 +20 10088895 . C T, 532.77 . BaseQRankSum=2.462;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.577;RAW_MQandDP=134450,41;ReadPosRankSum=1.301 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 20 10088896 . G . . END=10088967 GT:DP:GQ:MIN_DP:PL 0/0:49:99:42:0,110,1709 -20 10088968 . C CAAA, 1175.73 . BaseQRankSum=0.552;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.750;RAW_MQ=177808.00;ReadPosRankSum=2.416 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 +20 10088968 . C CAAA, 1175.73 . BaseQRankSum=0.552;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.750;RAW_MQandDP=177808,62;ReadPosRankSum=2.416 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 20 10088969 . A . . END=10088979 GT:DP:GQ:MIN_DP:PL 0/0:71:99:70:0,120,1800 -20 10088980 . T C, 1247.77 . BaseQRankSum=-1.585;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.232;RAW_MQ=176353.00;ReadPosRankSum=1.288 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 +20 10088980 . T C, 1247.77 . BaseQRankSum=-1.585;DP=68;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.232;RAW_MQandDP=176353,68;ReadPosRankSum=1.288 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 20 10088981 . A . . END=10088984 GT:DP:GQ:MIN_DP:PL 0/0:71:99:69:0,120,1800 -20 10088985 . T C, 1178.77 . BaseQRankSum=-0.192;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.248;RAW_MQ=191764.00;ReadPosRankSum=1.228 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 +20 10088985 . T C, 1178.77 . BaseQRankSum=-0.192;DP=74;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-5.248;RAW_MQandDP=191764,74;ReadPosRankSum=1.228 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 20 10088986 . A . . END=10088989 GT:DP:GQ:MIN_DP:PL 0/0:82:99:81:0,120,1800 20 10088990 . A . . END=10088990 GT:DP:GQ:MIN_DP:PL 0/0:84:7:84:0,7,2771 20 10088991 . C . . END=10088991 GT:DP:GQ:MIN_DP:PL 0/0:81:95:81:0,95,2703 @@ -1101,69 +1101,69 @@ 20 10089038 . A . . END=10089042 GT:DP:GQ:MIN_DP:PL 0/0:83:99:81:0,120,1800 20 10089043 . T . . END=10089043 GT:DP:GQ:MIN_DP:PL 0/0:76:79:76:0,79,2231 20 10089044 . G . . END=10089440 GT:DP:GQ:MIN_DP:PL 0/0:82:99:74:0,120,1800 -20 10089441 . A G, 1179.77 . BaseQRankSum=-4.885;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.948;RAW_MQ=270841.00;ReadPosRankSum=-0.156 GT:AD:DP:GQ:PL:SB 0/1:37,39,0:76:99:1208,0,1313,1319,1430,2749:19,18,14,25 +20 10089441 . A G, 1179.77 . BaseQRankSum=-4.885;DP=76;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.948;RAW_MQandDP=270841,76;ReadPosRankSum=-0.156 GT:AD:DP:GQ:PL:SB 0/1:37,39,0:76:99:1208,0,1313,1319,1430,2749:19,18,14,25 20 10089442 . G . . END=10089524 GT:DP:GQ:MIN_DP:PL 0/0:81:99:74:0,120,1800 -20 10089525 . C T, 1548.77 . BaseQRankSum=5.859;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.531;RAW_MQ=286610.00;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL:SB 0/1:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 +20 10089525 . C T, 1548.77 . BaseQRankSum=5.859;DP=81;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.531;RAW_MQandDP=286610,81;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL:SB 0/1:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 20 10089526 . G . . END=10090288 GT:DP:GQ:MIN_DP:PL 0/0:72:99:55:0,111,1800 -20 10090289 . CAA C,CA, 384.73 . BaseQRankSum=0.441;DP=80;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=1.393;RAW_MQ=287682.00;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL:SB 0/2:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 +20 10090289 . CAA C,CA, 384.73 . BaseQRankSum=0.441;DP=80;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=1.393;RAW_MQandDP=287682,80;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL:SB 0/2:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 20 10090292 . A . . END=10090763 GT:DP:GQ:MIN_DP:PL 0/0:75:99:61:0,120,1800 -20 10090764 . A G, 840.77 . BaseQRankSum=-2.659;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=226800.00;ReadPosRankSum=1.207 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 +20 10090764 . A G, 840.77 . BaseQRankSum=-2.659;DP=63;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=226800,63;ReadPosRankSum=1.207 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 20 10090765 . A . . END=10090969 GT:DP:GQ:MIN_DP:PL 0/0:75:99:65:0,120,1800 -20 10090970 . T C, 1257.77 . BaseQRankSum=-0.484;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.509;RAW_MQ=243938.00;ReadPosRankSum=-0.072 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1286,0,1092,1384,1201,2585:20,13,20,16 +20 10090970 . T C, 1257.77 . BaseQRankSum=-0.484;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.509;RAW_MQandDP=243938,69;ReadPosRankSum=-0.072 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:1286,0,1092,1384,1201,2585:20,13,20,16 20 10090971 . C . . END=10091213 GT:DP:GQ:MIN_DP:PL 0/0:61:99:49:0,120,1800 -20 10091214 . C T, 1249.77 . BaseQRankSum=0.361;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.916;RAW_MQ=249769.00;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:33,37,0:70:99:1278,0,1110,1377,1222,2599:11,22,13,24 +20 10091214 . C T, 1249.77 . BaseQRankSum=0.361;DP=70;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.916;RAW_MQandDP=249769,70;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL:SB 0/1:33,37,0:70:99:1278,0,1110,1377,1222,2599:11,22,13,24 20 10091215 . C . . END=10092414 GT:DP:GQ:MIN_DP:PL 0/0:69:99:46:0,120,1800 -20 10092415 . A G, 1635.77 . BaseQRankSum=-6.731;DP=101;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=363600.00;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:52,49,0:101:99:1664,0,1902,1820,2049,3870:27,25,24,25 +20 10092415 . A G, 1635.77 . BaseQRankSum=-6.731;DP=101;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=363600,101;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:52,49,0:101:99:1664,0,1902,1820,2049,3870:27,25,24,25 20 10092416 . G . . END=10092926 GT:DP:GQ:MIN_DP:PL 0/0:80:99:60:0,120,1800 -20 10092927 . G T, 106.77 . BaseQRankSum=-2.507;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.009;RAW_MQ=257282.00;ReadPosRankSum=-0.220 GT:AD:DP:GQ:PL:SB 0/1:59,13,0:72:99:135,0,1864,310,1901,2211:43,16,0,13 +20 10092927 . G T, 106.77 . BaseQRankSum=-2.507;DP=73;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.009;RAW_MQandDP=257282,73;ReadPosRankSum=-0.220 GT:AD:DP:GQ:PL:SB 0/1:59,13,0:72:99:135,0,1864,310,1901,2211:43,16,0,13 20 10092928 . T . . END=10093567 GT:DP:GQ:MIN_DP:PL 0/0:79:99:57:0,120,1800 -20 10093568 . GTT G,GT,GTTT, 326.73 . BaseQRankSum=0.426;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=0.410;RAW_MQ=203561.00;ReadPosRankSum=1.257 GT:AD:DP:GQ:PL:SB 0/2:17,4,17,4,0:42:99:364,329,1122,0,430,386,377,710,293,909,431,838,449,780,885:7,10,10,15 +20 10093568 . GTT G,GT,GTTT, 326.73 . BaseQRankSum=0.426;DP=59;ExcessHet=3.0103;MLEAC=0,1,0,0;MLEAF=0.00,0.500,0.00,0.00;MQRankSum=0.410;RAW_MQandDP=203561,59;ReadPosRankSum=1.257 GT:AD:DP:GQ:PL:SB 0/2:17,4,17,4,0:42:99:364,329,1122,0,430,386,377,710,293,909,431,838,449,780,885:7,10,10,15 20 10093571 . T . . END=10093922 GT:DP:GQ:MIN_DP:PL 0/0:62:99:51:0,99,1485 -20 10093923 . T A, 1075.77 . BaseQRankSum=-0.667;DP=67;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.358;RAW_MQ=234704.00;ReadPosRankSum=-1.583 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:1104,0,1257,1209,1353,2563:18,17,15,17 +20 10093923 . T A, 1075.77 . BaseQRankSum=-0.667;DP=67;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.358;RAW_MQandDP=234704,67;ReadPosRankSum=-1.583 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:1104,0,1257,1209,1353,2563:18,17,15,17 20 10093924 . G . . END=10094250 GT:DP:GQ:MIN_DP:PL 0/0:66:99:53:0,120,1800 -20 10094251 . T A, 1270.77 . BaseQRankSum=0.251;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQ=223200.00;ReadPosRankSum=1.806 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:1299,0,781,1376,889,2265:10,16,23,13 +20 10094251 . T A, 1270.77 . BaseQRankSum=0.251;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=223200,62;ReadPosRankSum=1.806 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:1299,0,781,1376,889,2265:10,16,23,13 20 10094252 . C . . END=10094581 GT:DP:GQ:MIN_DP:PL 0/0:68:99:46:0,117,1755 -20 10094582 . A G, 923.77 . BaseQRankSum=-1.388;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.270;RAW_MQ=243410.00;ReadPosRankSum=-0.018 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:952,0,1350,1070,1440,2510:20,19,16,14 +20 10094582 . A G, 923.77 . BaseQRankSum=-1.388;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.270;RAW_MQandDP=243410,69;ReadPosRankSum=-0.018 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:952,0,1350,1070,1440,2510:20,19,16,14 20 10094583 . T . . END=10094773 GT:DP:GQ:MIN_DP:PL 0/0:78:99:67:0,120,1800 -20 10094774 . C T, 1036.77 . BaseQRankSum=-0.784;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.962;RAW_MQ=267241.00;ReadPosRankSum=0.197 GT:AD:DP:GQ:PL:SB 0/1:40,35,0:75:99:1065,0,1282,1185,1385,2570:24,16,21,14 +20 10094774 . C T, 1036.77 . BaseQRankSum=-0.784;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.962;RAW_MQandDP=267241,75;ReadPosRankSum=0.197 GT:AD:DP:GQ:PL:SB 0/1:40,35,0:75:99:1065,0,1282,1185,1385,2570:24,16,21,14 20 10094775 . A . . END=10095431 GT:DP:GQ:MIN_DP:PL 0/0:77:99:63:0,120,1800 -20 10095432 . GTGATGATGA G, 839.73 . BaseQRankSum=1.265;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.431;RAW_MQ=227748.00;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 +20 10095432 . GTGATGATGA G, 839.73 . BaseQRankSum=1.265;DP=77;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.431;RAW_MQandDP=227748,77;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 20 10095442 . T . . END=10095740 GT:DP:GQ:MIN_DP:PL 0/0:80:99:64:0,120,1800 -20 10095741 . A G, 1075.77 . BaseQRankSum=-0.534;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.313;RAW_MQ=233528.00;ReadPosRankSum=-0.500 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:1104,0,1233,1213,1335,2547:14,22,18,16 +20 10095741 . A G, 1075.77 . BaseQRankSum=-0.534;DP=71;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.313;RAW_MQandDP=233528,71;ReadPosRankSum=-0.500 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:1104,0,1233,1213,1335,2547:14,22,18,16 20 10095742 . G . . END=10096292 GT:DP:GQ:MIN_DP:PL 0/0:73:99:63:0,120,1800 -20 10096293 . C T, 1355.77 . BaseQRankSum=4.664;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.397;RAW_MQ=257261.00;ReadPosRankSum=-1.135 GT:AD:DP:GQ:PL:SB 0/1:37,38,0:75:99:1384,0,1258,1495,1372,2867:21,16,21,17 +20 10096293 . C T, 1355.77 . BaseQRankSum=4.664;DP=75;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.397;RAW_MQandDP=257261,75;ReadPosRankSum=-1.135 GT:AD:DP:GQ:PL:SB 0/1:37,38,0:75:99:1384,0,1258,1495,1372,2867:21,16,21,17 20 10096294 . T . . END=10096595 GT:DP:GQ:MIN_DP:PL 0/0:68:99:57:0,120,1800 -20 10096596 . C T, 1562.77 . BaseQRankSum=2.728;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.612;RAW_MQ=300461.00;ReadPosRankSum=-0.170 GT:AD:DP:GQ:PL:SB 0/1:40,47,0:87:99:1591,0,1273,1711,1414,3125:19,21,23,24 +20 10096596 . C T, 1562.77 . BaseQRankSum=2.728;DP=87;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.612;RAW_MQandDP=300461,87;ReadPosRankSum=-0.170 GT:AD:DP:GQ:PL:SB 0/1:40,47,0:87:99:1591,0,1273,1711,1414,3125:19,21,23,24 20 10096597 . T . . END=10096767 GT:DP:GQ:MIN_DP:PL 0/0:90:99:75:0,120,1800 -20 10096768 . A C, 1682.77 . BaseQRankSum=-2.764;DP=91;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.609;RAW_MQ=319323.00;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL:SB 0/1:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 +20 10096768 . A C, 1682.77 . BaseQRankSum=-2.764;DP=91;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.609;RAW_MQandDP=319323,91;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL:SB 0/1:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 20 10096769 . A . . END=10096898 GT:DP:GQ:MIN_DP:PL 0/0:78:99:65:0,120,1800 -20 10096899 . G T, 1614.77 . BaseQRankSum=2.755;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.387;RAW_MQ=279938.00;ReadPosRankSum=0.422 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 +20 10096899 . G T, 1614.77 . BaseQRankSum=2.755;DP=79;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.387;RAW_MQandDP=279938,79;ReadPosRankSum=0.422 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 20 10096900 . G . . END=10096904 GT:DP:GQ:MIN_DP:PL 0/0:82:99:78:0,120,1800 -20 10096905 . TA T, 1600.73 . BaseQRankSum=-0.755;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.677;RAW_MQ=291579.00;ReadPosRankSum=0.461 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 +20 10096905 . TA T, 1600.73 . BaseQRankSum=-0.755;DP=83;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.677;RAW_MQandDP=291579,83;ReadPosRankSum=0.461 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 20 10096907 . A . . END=10096932 GT:DP:GQ:MIN_DP:PL 0/0:84:99:82:0,120,1800 -20 10096933 . G C, 1511.77 . BaseQRankSum=-1.914;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.802;RAW_MQ=298779.00;ReadPosRankSum=0.334 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 +20 10096933 . G C, 1511.77 . BaseQRankSum=-1.914;DP=85;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.802;RAW_MQandDP=298779,85;ReadPosRankSum=0.334 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 20 10096934 . T . . END=10096957 GT:DP:GQ:MIN_DP:PL 0/0:90:99:86:0,120,1800 -20 10096958 . G A, 1766.77 . BaseQRankSum=2.839;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.701;RAW_MQ=323979.00;ReadPosRankSum=-1.833 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 +20 10096958 . G A, 1766.77 . BaseQRankSum=2.839;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.701;RAW_MQandDP=323979,92;ReadPosRankSum=-1.833 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 20 10096959 . G . . END=10097074 GT:DP:GQ:MIN_DP:PL 0/0:92:99:84:0,120,1800 -20 10097075 . T G, 1445.77 . BaseQRankSum=-2.533;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.389;RAW_MQ=315628.00;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 +20 10097075 . T G, 1445.77 . BaseQRankSum=-2.533;DP=92;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.389;RAW_MQandDP=315628,92;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL:SB 0/1:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 20 10097076 . A . . END=10097100 GT:DP:GQ:MIN_DP:PL 0/0:91:99:77:0,120,1800 -20 10097101 . C CTTT,CTTTT, 1091.73 . BaseQRankSum=-1.134;DP=76;ExcessHet=3.0103;MLEAC=1,0,0;MLEAF=0.500,0.00,0.00;MQRankSum=-2.428;RAW_MQ=252294.00;ReadPosRankSum=2.086 GT:AD:DP:GQ:PL:SB 0/1:34,26,4,0:64:99:1129,0,1306,558,1324,2012,982,1430,2052,2377:22,12,15,15 +20 10097101 . C CTTT,CTTTT, 1091.73 . BaseQRankSum=-1.134;DP=76;ExcessHet=3.0103;MLEAC=1,0,0;MLEAF=0.500,0.00,0.00;MQRankSum=-2.428;RAW_MQandDP=252294,76;ReadPosRankSum=2.086 GT:AD:DP:GQ:PL:SB 0/1:34,26,4,0:64:99:1129,0,1306,558,1324,2012,982,1430,2052,2377:22,12,15,15 20 10097102 . T . . END=10097435 GT:DP:GQ:MIN_DP:PL 0/0:70:99:60:0,120,1800 -20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, 1054.73 . BaseQRankSum=1.820;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.464;RAW_MQ=262143.00;ReadPosRankSum=-3.097 GT:AD:DP:GQ:PL:SB 0/1:57,32,0:89:99:1092,0,2241,1263,2338,3601:23,34,11,21 -20 10097437 . TTTTC *,T, 2089.73 . DP=76;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQ=217330.00 GT:AD:DP:GQ:PL:SB 1/2:0,32,23,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642:0,0,16,39 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, 1054.73 . BaseQRankSum=1.820;DP=89;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-6.464;RAW_MQandDP=262143,89;ReadPosRankSum=-3.097 GT:AD:DP:GQ:PL:SB 0/1:57,32,0:89:99:1092,0,2241,1263,2338,3601:23,34,11,21 +20 10097437 . TTTTC *,T, 2089.73 . DP=76;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=217330,76 GT:AD:DP:GQ:PL:SB 1/2:0,32,23,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642:0,0,16,39 20 10097442 . T . . END=10097475 GT:DP:GQ:MIN_DP:PL 0/0:78:0:63:0,0,557 20 10097476 . T . . END=10097476 GT:DP:GQ:MIN_DP:PL 0/0:66:11:66:0,11,2255 20 10097477 . C . . END=10097625 GT:DP:GQ:MIN_DP:PL 0/0:69:99:45:0,109,1710 -20 10097626 . C A, 626.77 . BaseQRankSum=1.085;DP=48;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.331;RAW_MQ=162820.00;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:655,0,957,739,1017,1757:8,20,8,12 +20 10097626 . C A, 626.77 . BaseQRankSum=1.085;DP=48;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.331;RAW_MQandDP=162820,48;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:655,0,957,739,1017,1757:8,20,8,12 20 10097627 . T . . END=10097788 GT:DP:GQ:MIN_DP:PL 0/0:60:99:49:0,120,1800 -20 10097789 . T C, 688.77 . BaseQRankSum=-1.157;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.805;RAW_MQ=191405.00;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 +20 10097789 . T C, 688.77 . BaseQRankSum=-1.157;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.805;RAW_MQandDP=191405,57;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 20 10097790 . C . . END=10097915 GT:DP:GQ:MIN_DP:PL 0/0:69:99:42:0,108,1620 20 10097916 . T . . END=10097916 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1449 20 10097917 . C . . END=10097919 GT:DP:GQ:MIN_DP:PL 0/0:40:96:39:0,96,1440 20 10097920 . G . . END=10097920 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 20 10097921 . A . . END=10097926 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 20 10097927 . T . . END=10097927 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 -20 10097928 . G A, 570.77 . BaseQRankSum=-1.203;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.654;RAW_MQ=121323.00;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL:SB 0/1:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 +20 10097928 . G A, 570.77 . BaseQRankSum=-1.203;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.654;RAW_MQandDP=121323,36;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL:SB 0/1:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 20 10097929 . A . . END=10097930 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 20 10097931 . C . . END=10097932 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 20 10097933 . C . . END=10097935 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 @@ -1190,7 +1190,7 @@ 20 10098097 . A . . END=10098102 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 20 10098103 . A . . END=10098108 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 20 10098109 . A . . END=10098109 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 -20 10098110 . G C, 586.77 . BaseQRankSum=2.510;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.477;RAW_MQ=124082.00;ReadPosRankSum=-0.730 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 +20 10098110 . G C, 586.77 . BaseQRankSum=2.510;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.477;RAW_MQandDP=124082,36;ReadPosRankSum=-0.730 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 20 10098111 . T . . END=10098112 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 20 10098113 . T . . END=10098113 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 20 10098114 . C . . END=10098119 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 @@ -1198,7 +1198,7 @@ 20 10098126 . A . . END=10098128 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 20 10098129 . T . . END=10098132 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 20 10098133 . T . . END=10098134 GT:DP:GQ:MIN_DP:PL 0/0:38:91:37:0,91,1395 -20 10098135 . C A, 471.77 . BaseQRankSum=-1.155;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.546;RAW_MQ=135182.00;ReadPosRankSum=-0.591 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 +20 10098135 . C A, 471.77 . BaseQRankSum=-1.155;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.546;RAW_MQandDP=135182,38;ReadPosRankSum=-0.591 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 20 10098136 . A . . END=10098147 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 20 10098148 . T . . END=10098148 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 20 10098149 . T . . END=10098150 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 @@ -1208,21 +1208,21 @@ 20 10098198 . A . . END=10098203 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 20 10098204 . G . . END=10098216 GT:DP:GQ:MIN_DP:PL 0/0:24:60:21:0,60,900 20 10098217 . T . . END=10098218 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 -20 10098219 . TATATATA T, 295.73 . BaseQRankSum=3.147;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.205;RAW_MQ=65705.00;ReadPosRankSum=0.427 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 +20 10098219 . TATATATA T, 295.73 . BaseQRankSum=3.147;DP=21;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.205;RAW_MQandDP=65705,21;ReadPosRankSum=0.427 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 20 10098227 . T . . END=10098228 GT:DP:GQ:MIN_DP:PL 0/0:18:30:18:0,30,450 20 10098229 . A . . END=10098236 GT:DP:GQ:MIN_DP:PL 0/0:17:21:13:0,21,315 -20 10098237 . A T, 244.77 . BaseQRankSum=0.006;DP=13;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.742;RAW_MQ=37064.00;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 +20 10098237 . A T, 244.77 . BaseQRankSum=0.006;DP=13;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.742;RAW_MQandDP=37064,13;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 20 10098238 . A . . END=10098244 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,315 20 10098245 . T . . END=10098248 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 20 10098249 . A . . END=10098250 GT:DP:GQ:MIN_DP:PL 0/0:10:18:9:0,18,270 20 10098251 . A . . END=10098255 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 20 10098256 . T . . END=10098264 GT:DP:GQ:MIN_DP:PL 0/0:8:9:6:0,9,135 -20 10098265 . T C, 133.77 . BaseQRankSum=1.834;DP=6;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.834;RAW_MQ=10564.00;ReadPosRankSum=0.000 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:2,4,0:6:59:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 +20 10098265 . T C, 133.77 . BaseQRankSum=1.834;DP=6;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.834;RAW_MQandDP=10564,6;ReadPosRankSum=0.000 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:2,4,0:6:59:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 20 10098266 . A . . END=10098272 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 20 10098273 . A . . END=10098279 GT:DP:GQ:MIN_DP:PL 0/0:3:6:3:0,6,90 20 10098280 . A . . END=10098290 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,126 20 10098291 . A . . END=10098307 GT:DP:GQ:MIN_DP:PL 0/0:3:6:2:0,6,86 -20 10098308 . AAT A, 0 . DP=2;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;RAW_MQ=7200.00 GT:AD:DP:GQ:PL:SB 0/0:2,0,0:2:6:0,6,81,6,81,81:0,2,0,0 +20 10098308 . AAT A, 0 . DP=2;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;RAW_MQandDP=7200,2 GT:AD:DP:GQ:PL:SB 0/0:2,0,0:2:6:0,6,81,6,81,81:0,2,0,0 20 10098311 . A . . END=10098321 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,80 20 10098322 . A . . END=10098327 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,121 20 10098328 . T . . END=10098329 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,169 @@ -1292,7 +1292,7 @@ 20 10098882 . C . . END=10098882 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,1207 20 10098883 . T . . END=10098883 GT:DP:GQ:MIN_DP:PL 0/0:32:56:32:0,56,1237 20 10098884 . C . . END=10098884 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 -20 10098885 . C CA, 433.73 . BaseQRankSum=0.165;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.449;RAW_MQ=77157.00;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 0/1:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 +20 10098885 . C CA, 433.73 . BaseQRankSum=0.165;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.449;RAW_MQandDP=77157,31;ReadPosRankSum=-1.073 GT:AD:DP:GQ:PL:SB 0/1:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 20 10098886 . C . . END=10098890 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,1260 20 10098891 . C . . END=10098891 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 20 10098892 . G . . END=10098900 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 @@ -1309,7 +1309,7 @@ 20 10098942 . G . . END=10098942 GT:DP:GQ:MIN_DP:PL 0/0:23:63:23:0,63,945 20 10098943 . T . . END=10098943 GT:DP:GQ:MIN_DP:PL 0/0:21:52:21:0,52,766 20 10098944 . G . . END=10098944 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,867 -20 10098945 . T C, 452.77 . BaseQRankSum=1.475;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.504;RAW_MQ=57553.00;ReadPosRankSum=1.038 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 +20 10098945 . T C, 452.77 . BaseQRankSum=1.475;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.504;RAW_MQandDP=57553,22;ReadPosRankSum=1.038 GT:AD:DP:GQ:PL:SB 0/1:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 20 10098946 . C . . END=10098946 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,872 20 10098947 . T . . END=10098947 GT:DP:GQ:MIN_DP:PL 0/0:22:55:22:0,55,842 20 10098948 . G . . END=10098948 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,897 @@ -1317,7 +1317,7 @@ 20 10098952 . C . . END=10098955 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 20 10098956 . A . . END=10098959 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 20 10098960 . G . . END=10098986 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,900 -20 10098987 . C T, 379.77 . BaseQRankSum=3.127;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.734;RAW_MQ=64586.00;ReadPosRankSum=0.436 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:408,0,350,441,389,830:9,2,13,0 +20 10098987 . C T, 379.77 . BaseQRankSum=3.127;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.734;RAW_MQandDP=64586,24;ReadPosRankSum=0.436 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:408,0,350,441,389,830:9,2,13,0 20 10098988 . G . . END=10099016 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,890 20 10099017 . T . . END=10099018 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,950 20 10099019 . G . . END=10099020 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 @@ -1325,26 +1325,26 @@ 20 10099022 . C . . END=10099022 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 20 10099023 . T . . END=10099027 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 20 10099028 . A . . END=10099028 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 -20 10099029 . T C, 334.77 . BaseQRankSum=-1.809;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQ=79617.00;ReadPosRankSum=-1.224 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 +20 10099029 . T C, 334.77 . BaseQRankSum=-1.809;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQandDP=79617,28;ReadPosRankSum=-1.224 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 20 10099030 . C . . END=10099031 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 20 10099032 . T . . END=10099033 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,945 -20 10099034 . C A, 334.77 . BaseQRankSum=2.757;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQ=79617.00;ReadPosRankSum=-1.850 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 +20 10099034 . C A, 334.77 . BaseQRankSum=2.757;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-3.641;RAW_MQandDP=79617,28;ReadPosRankSum=-1.850 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 20 10099035 . G . . END=10099039 GT:DP:GQ:MIN_DP:PL 0/0:29:60:26:0,60,900 20 10099040 . T . . END=10099040 GT:DP:GQ:MIN_DP:PL 0/0:26:51:26:0,51,765 20 10099041 . C . . END=10099041 GT:DP:GQ:MIN_DP:PL 0/0:27:54:27:0,54,810 20 10099042 . T . . END=10099043 GT:DP:GQ:MIN_DP:PL 0/0:26:57:24:0,57,855 -20 10099044 . A C, 334.77 . BaseQRankSum=-1.148;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQ=59851.00;ReadPosRankSum=-2.207 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 +20 10099044 . A C, 334.77 . BaseQRankSum=-1.148;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQandDP=59851,24;ReadPosRankSum=-2.207 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 20 10099045 . C . . END=10099045 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 -20 10099046 . T C, 304.77 . BaseQRankSum=-2.165;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQ=59851.00;ReadPosRankSum=-2.297 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 +20 10099046 . T C, 304.77 . BaseQRankSum=-2.165;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.418;RAW_MQandDP=59851,24;ReadPosRankSum=-2.297 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 20 10099047 . G . . END=10099052 GT:DP:GQ:MIN_DP:PL 0/0:24:57:23:0,57,855 20 10099053 . G . . END=10099054 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,810 -20 10099055 . T C, 256.77 . BaseQRankSum=-1.554;DP=23;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.316;RAW_MQ=58555.00;ReadPosRankSum=-1.970 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 +20 10099055 . T C, 256.77 . BaseQRankSum=-1.554;DP=23;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.316;RAW_MQandDP=58555,23;ReadPosRankSum=-1.970 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 20 10099056 . T . . END=10099061 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,900 20 10099062 . A . . END=10099067 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,921 20 10099068 . G . . END=10099072 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,1042 20 10099073 . T . . END=10099077 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 20 10099078 . G . . END=10099078 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 -20 10099079 . C T, 116.77 . BaseQRankSum=1.434;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.821;RAW_MQ=78698.00;ReadPosRankSum=0.969 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 +20 10099079 . C T, 116.77 . BaseQRankSum=1.434;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.821;RAW_MQandDP=78698,29;ReadPosRankSum=0.969 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 20 10099080 . G . . END=10099089 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 20 10099090 . A . . END=10099095 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 20 10099096 . A . . END=10099096 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1310 @@ -1352,13 +1352,13 @@ 20 10099101 . G . . END=10099105 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 20 10099106 . T . . END=10099106 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 20 10099107 . T . . END=10099110 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1485 -20 10099111 . T TTTTGTTTG, 656.73 . BaseQRankSum=-1.207;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.071;RAW_MQ=109737.00;ReadPosRankSum=-0.273 GT:AD:DP:GQ:PL:SB 0/1:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 +20 10099111 . T TTTTGTTTG, 656.73 . BaseQRankSum=-1.207;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-4.071;RAW_MQandDP=109737,42;ReadPosRankSum=-0.273 GT:AD:DP:GQ:PL:SB 0/1:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 20 10099112 . T . . END=10099139 GT:DP:GQ:MIN_DP:PL 0/0:57:99:49:0,114,1710 -20 10099140 . G T, 1005.77 . BaseQRankSum=-0.114;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.469;RAW_MQ=192512.00;ReadPosRankSum=0.338 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 +20 10099140 . G T, 1005.77 . BaseQRankSum=-0.114;DP=62;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.469;RAW_MQandDP=192512,62;ReadPosRankSum=0.338 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 20 10099141 . G . . END=10099189 GT:DP:GQ:MIN_DP:PL 0/0:67:99:64:0,120,1800 -20 10099190 . G T, 1034.77 . BaseQRankSum=-0.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.711;RAW_MQ=215351.00;ReadPosRankSum=-1.260 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 +20 10099190 . G T, 1034.77 . BaseQRankSum=-0.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.711;RAW_MQandDP=215351,65;ReadPosRankSum=-1.260 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 20 10099191 . C . . END=10099219 GT:DP:GQ:MIN_DP:PL 0/0:58:99:46:0,111,1665 -20 10099220 . A G, 577.77 . BaseQRankSum=-1.664;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.596;RAW_MQ=149477.00;ReadPosRankSum=0.629 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 +20 10099220 . A G, 577.77 . BaseQRankSum=-1.664;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.596;RAW_MQandDP=149477,45;ReadPosRankSum=0.629 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 20 10099221 . T . . END=10099229 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,102,1530 20 10099230 . T . . END=10099233 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1350 20 10099234 . T . . END=10099235 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1305 @@ -1366,16 +1366,16 @@ 20 10099239 . C . . END=10099246 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 20 10099247 . C . . END=10099248 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 20 10099249 . C . . END=10099249 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 -20 10099250 . G A, 699.77 . BaseQRankSum=3.170;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.272;RAW_MQ=119006.00;ReadPosRankSum=0.583 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:728,0,424,776,487,1263:12,4,11,10 +20 10099250 . G A, 699.77 . BaseQRankSum=3.170;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-2.272;RAW_MQandDP=119006,37;ReadPosRankSum=0.583 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:728,0,424,776,487,1263:12,4,11,10 20 10099251 . A . . END=10099269 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1132 -20 10099270 . A C, 0 . BaseQRankSum=-2.866;DP=30;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-2.691;RAW_MQ=98268.00;ReadPosRankSum=-0.138 GT:AD:DP:GQ:PL:SB 0/0:27,3,0:30:60:0,60,1084,81,1092,1113:19,8,0,3 +20 10099270 . A C, 0 . BaseQRankSum=-2.866;DP=30;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=-2.691;RAW_MQandDP=98268,30;ReadPosRankSum=-0.138 GT:AD:DP:GQ:PL:SB 0/0:27,3,0:30:60:0,60,1084,81,1092,1113:19,8,0,3 20 10099271 . C . . END=10099271 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 20 10099272 . C . . END=10099534 GT:DP:GQ:MIN_DP:PL 0/0:57:99:36:0,99,1485 -20 10099535 . G A, 1335.77 . BaseQRankSum=5.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.418;RAW_MQ=226251.00;ReadPosRankSum=-0.777 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 +20 10099535 . G A, 1335.77 . BaseQRankSum=5.034;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.418;RAW_MQandDP=226251,65;ReadPosRankSum=-0.777 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 20 10099536 . T . . END=10099564 GT:DP:GQ:MIN_DP:PL 0/0:67:99:63:0,120,1800 -20 10099565 . C T, 1346.77 . BaseQRankSum=4.595;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.266;RAW_MQ=243410.00;ReadPosRankSum=1.225 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 +20 10099565 . C T, 1346.77 . BaseQRankSum=4.595;DP=69;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.266;RAW_MQandDP=243410,69;ReadPosRankSum=1.225 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 20 10099566 . T . . END=10099754 GT:DP:GQ:MIN_DP:PL 0/0:77:99:66:0,120,1800 -20 10099755 . C T, 1098.77 . BaseQRankSum=1.550;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.022;RAW_MQ=229010.00;ReadPosRankSum=-0.230 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 +20 10099755 . C T, 1098.77 . BaseQRankSum=1.550;DP=65;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.022;RAW_MQandDP=229010,65;ReadPosRankSum=-0.230 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 20 10099756 . C . . END=10099831 GT:DP:GQ:MIN_DP:PL 0/0:63:99:58:0,120,1800 -20 10099832 . A G, 1073.77 . BaseQRankSum=-4.563;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.869;RAW_MQ=250276.00;ReadPosRankSum=-1.023 GT:AD:DP:GQ:PL:SB 0/1:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 +20 10099832 . A G, 1073.77 . BaseQRankSum=-4.563;DP=72;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.869;RAW_MQandDP=250276,72;ReadPosRankSum=-1.023 GT:AD:DP:GQ:PL:SB 0/1:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 20 10099833 . T . . END=10100000 GT:DP:GQ:MIN_DP:PL 0/0:85:99:73:0,120,1800 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf.idx b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testGVCFMode.gatk4.g.vcf.idx index e63f7ce8701c21cfa5e264f00b4504077ba71497..fa5d9fb4b4ea5830ae4077ef98c04920d2ae0a9d 100644 GIT binary patch literal 848 zcmeHFy9&ZU5Zov>);9itWmd$>#zIjnLOGFr&I zw48Izgc&InQ7N4OYppD1qEecl6~#g+$I`<=CK-CI?PayuYe}KMFb~u47ANpN_S{zh nSv^@M{>ipHo=pKh0UR8Bjhe-90Pr0*xSO31-hqGRpv~$JQh$-Y literal 848 zcmeHFI|{-;5S=JC);3-u6U53^Q3Shh{$nVpwSUB8AeS;)!Ok&rxP4dRcfAoaZ$2inxY3X z%RMy@Ea#qCmYV0N1XPfdTI`#jlB$=USdwj`SC*W{aF(9|3?kBg?Max}dNHDv8zMk0 H8fF0i*33x7 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf new file mode 100644 index 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T . . END=10000068 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,117,1341 +20 10000069 . A . . END=10000069 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1270 +20 10000070 . A . . END=10000130 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,109,1311 +20 10000131 . A . . END=10000131 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1394 +20 10000132 . T . . END=10000332 GT:DP:GQ:MIN_DP:PL 0/0:52:99:46:0,115,1456 +20 10000333 . A . . END=10000333 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1303 +20 10000334 . C . . END=10000355 GT:DP:GQ:MIN_DP:PL 0/0:45:99:44:0,109,1467 +20 10000356 . C . . END=10000356 GT:DP:GQ:MIN_DP:PL 0/0:45:78:45:0,78,1246 +20 10000357 . T . . END=10000373 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,99,1485 +20 10000374 . A . . END=10000377 GT:DP:GQ:MIN_DP:PL 0/0:42:96:41:0,96,1440 +20 10000378 . T . . END=10000380 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10000381 . A . . END=10000383 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1350 +20 10000384 . A . . END=10000386 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1023 +20 10000387 . T . . END=10000388 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +20 10000389 . C . . END=10000389 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,870 +20 10000390 . T . . END=10000391 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +20 10000392 . A . . END=10000392 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,884 +20 10000393 . A . . END=10000395 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,924 +20 10000396 . T . . END=10000400 GT:DP:GQ:MIN_DP:PL 0/0:31:76:30:0,76,906 +20 10000401 . T . . END=10000402 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,993 +20 10000403 . A . . END=10000403 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10000404 . T . . END=10000405 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1022 +20 10000406 . T . . END=10000406 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10000407 . C . . END=10000407 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,980 +20 10000408 . A . . END=10000416 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,984 +20 10000417 . G . . END=10000418 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,751 +20 10000419 . C . . END=10000419 GT:DP:GQ:MIN_DP:PL 0/0:27:62:27:0,62,788 +20 10000420 . A . . END=10000422 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10000423 . C . . END=10000423 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10000424 . A . . END=10000429 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10000430 . A . . END=10000431 GT:DP:GQ:MIN_DP:PL 0/0:28:62:27:0,62,843 +20 10000432 . A . . END=10000433 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,872 +20 10000434 . T . . END=10000436 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10000437 . C . . END=10000437 GT:DP:GQ:MIN_DP:PL 0/0:29:67:29:0,67,855 +20 10000438 . C . . END=10000438 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +20 10000439 . T G, 687.77 . DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=97200,27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:80:716,80,0,716,80,716:0,0,19,8 +20 10000440 . T . . END=10000445 GT:DP:GQ:MIN_DP:PL 0/0:29:70:26:0,70,886 +20 10000446 . A . . END=10000446 GT:DP:GQ:MIN_DP:PL 0/0:26:58:26:0,58,812 +20 10000447 . A . . END=10000453 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,779 +20 10000454 . C . . END=10000454 GT:DP:GQ:MIN_DP:PL 0/0:27:60:27:0,60,795 +20 10000455 . A . . END=10000460 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,834 +20 10000461 . T . . END=10000464 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,840 +20 10000465 . T . . END=10000466 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10000467 . T . . END=10000467 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1053 +20 10000468 . G . . END=10000469 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1003 +20 10000470 . A . . END=10000471 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1038 +20 10000472 . A . . END=10000472 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1074 +20 10000473 . T . . END=10000482 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1062 +20 10000483 . G . . END=10000483 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1096 +20 10000484 . A . . END=10000501 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1620 +20 10000502 . A . . END=10000502 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,1156 +20 10000503 . A . . END=10000527 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1147 +20 10000528 . C . . END=10000529 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1074 +20 10000530 . G . . END=10000533 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1135 +20 10000534 . T C, 307.77 . BaseQRankSum=-2.640;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=126000,35;ReadPosRankSum=-0.383 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:336,0,521,393,568,962:11,8,8,8 +20 10000535 . G . . END=10000538 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,104,1184 +20 10000539 . A . . END=10000539 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1194 +20 10000540 . A . . END=10000540 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1159 +20 10000541 . T . . END=10000543 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +20 10000544 . T . . END=10000544 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1162 +20 10000545 . G . . END=10000547 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1530 +20 10000548 . C . . END=10000550 GT:DP:GQ:MIN_DP:PL 0/0:40:80:38:0,80,975 +20 10000551 . T . . END=10000552 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1088 +20 10000553 . A . . END=10000553 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10000554 . C . . END=10000556 GT:DP:GQ:MIN_DP:PL 0/0:37:63:37:0,63,999 +20 10000557 . C . . END=10000567 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,976 +20 10000568 . C . . END=10000568 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1124 +20 10000569 . A . . END=10000569 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1150 +20 10000570 . A . . END=10000570 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10000571 . C . . END=10000571 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1049 +20 10000572 . A . . END=10000581 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1081 +20 10000582 . T . . END=10000582 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1096 +20 10000583 . T . . END=10000586 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,988 +20 10000587 . G . . END=10000587 GT:DP:GQ:MIN_DP:PL 0/0:34:52:34:0,52,911 +20 10000588 . C . . END=10000589 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10000590 . G . . END=10000591 GT:DP:GQ:MIN_DP:PL 0/0:36:80:35:0,80,1092 +20 10000592 . C . . END=10000592 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1084 +20 10000593 . C . . END=10000595 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1124 +20 10000596 . G . . END=10000596 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1120 +20 10000597 . G . . END=10000597 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1110 +20 10000598 . T A, 963.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:992,93,0,992,93,992:0,0,14,17 +20 10000599 . T . . END=10000599 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1126 +20 10000600 . A . . END=10000606 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1171 +20 10000607 . A . . END=10000611 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1395 +20 10000612 . A . . END=10000614 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10000615 . G . . END=10000615 GT:DP:GQ:MIN_DP:PL 0/0:38:73:38:0,73,1138 +20 10000616 . A . . END=10000617 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10000618 . T . . END=10000618 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1043 +20 10000619 . T . . END=10000619 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1092 +20 10000620 . A . . END=10000654 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,102,1145 +20 10000655 . A . . END=10000655 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1172 +20 10000656 . A . . END=10000658 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1575 +20 10000659 . G . . END=10000659 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1094 +20 10000660 . C . . END=10000660 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1170 +20 10000661 . T . . END=10000661 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1162 +20 10000662 . T . . END=10000662 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10000663 . T . . END=10000663 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1113 +20 10000664 . T . . END=10000757 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1125 +20 10000758 . T A, 1386.77 . DP=48;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=172800,48 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1415,140,0,1415,140,1415:0,0,26,21 +20 10000759 . A . . END=10000788 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,120,1800 +20 10000789 . A . . END=10000789 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1315 +20 10000790 . A . . END=10000906 GT:DP:GQ:MIN_DP:PL 0/0:46:99:37:0,99,1115 +20 10000907 . G . . END=10000907 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1107 +20 10000908 . T . . END=10000912 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10000913 . G . . END=10000913 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1082 +20 10000914 . A . . END=10000927 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1191 +20 10000928 . A . . END=10000936 GT:DP:GQ:MIN_DP:PL 0/0:37:90:34:0,90,1350 +20 10000937 . A . . END=10000942 GT:DP:GQ:MIN_DP:PL 0/0:33:84:30:0,84,1260 +20 10000943 . G . . END=10000943 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,912 +20 10000944 . A . . END=10000944 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10000945 . C . . END=10000948 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,980 +20 10000949 . C . . END=10000949 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,905 +20 10000950 . C . . END=10000952 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10000953 . T . . END=10000954 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10000955 . A . . END=10000956 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,998 +20 10000957 . T . . END=10000957 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10000958 . A . . END=10000958 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,970 +20 10000959 . T . . END=10000959 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1012 +20 10000960 . T . . END=10000963 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,949 +20 10000964 . A . . END=10000964 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,951 +20 10000965 . A . . END=10000967 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10000968 . T . . END=10000968 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1006 +20 10000969 . A . . END=10000969 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10000970 . C . . END=10000973 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10000974 . T . . END=10000995 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10000996 . A . . END=10000999 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10001000 . G . . END=10001000 GT:DP:GQ:MIN_DP:PL 0/0:32:65:32:0,65,872 +20 10001001 . G . . END=10001012 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,901 +20 10001013 . C . . END=10001014 GT:DP:GQ:MIN_DP:PL 0/0:34:83:33:0,83,933 +20 10001015 . A . . END=10001018 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10001019 . T . . END=10001023 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10001024 . C . . END=10001028 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,885 +20 10001029 . T . . END=10001032 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,883 +20 10001033 . C . . END=10001036 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,962 +20 10001037 . A . . END=10001051 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10001052 . A . . END=10001052 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,911 +20 10001053 . A . . END=10001058 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10001059 . C . . END=10001065 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10001066 . T . . END=10001085 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,893 +20 10001086 . T . . END=10001089 GT:DP:GQ:MIN_DP:PL 0/0:32:78:31:0,78,1170 +20 10001090 . G . . END=10001097 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10001098 . A . . END=10001098 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10001099 . C . . END=10001099 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,898 +20 10001100 . A . . END=10001100 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,964 +20 10001101 . G . . END=10001101 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,908 +20 10001102 . A . . END=10001118 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,933 +20 10001119 . A . . END=10001129 GT:DP:GQ:MIN_DP:PL 0/0:33:82:31:0,82,949 +20 10001130 . T . . END=10001131 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10001132 . C . . END=10001132 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,941 +20 10001133 . T . . END=10001144 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,963 +20 10001145 . G . . END=10001148 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +20 10001149 . A . . END=10001154 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,1170 +20 10001155 . G . . END=10001159 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,965 +20 10001160 . T . . END=10001169 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,957 +20 10001170 . T . . END=10001176 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10001177 . A . . END=10001182 GT:DP:GQ:MIN_DP:PL 0/0:29:78:28:0,78,1170 +20 10001183 . T . . END=10001183 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10001184 . C . . END=10001184 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,859 +20 10001185 . A . . END=10001192 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10001193 . T . . END=10001193 GT:DP:GQ:MIN_DP:PL 0/0:29:60:29:0,60,916 +20 10001194 . A . . END=10001199 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10001200 . T . . END=10001200 GT:DP:GQ:MIN_DP:PL 0/0:31:71:31:0,71,959 +20 10001201 . T . . END=10001212 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,851 +20 10001213 . C . . END=10001213 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,799 +20 10001214 . A . . END=10001215 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,859 +20 10001216 . T . . END=10001219 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20 10001220 . T . . END=10001220 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,845 +20 10001221 . T . . END=10001225 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20 10001226 . T . . END=10001226 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20 10001227 . A . . END=10001228 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20 10001229 . C . . END=10001229 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10001230 . T . . END=10001246 GT:DP:GQ:MIN_DP:PL 0/0:28:70:27:0,70,807 +20 10001247 . G . . END=10001247 GT:DP:GQ:MIN_DP:PL 0/0:28:65:28:0,65,827 +20 10001248 . A . . END=10001251 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,758 +20 10001252 . A . . END=10001252 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20 10001253 . A . . END=10001253 GT:DP:GQ:MIN_DP:PL 0/0:26:46:26:0,46,774 +20 10001254 . T . . END=10001255 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10001256 . A . . END=10001268 GT:DP:GQ:MIN_DP:PL 0/0:26:63:24:0,63,945 +20 10001269 . A . . END=10001270 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10001271 . A . . END=10001271 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +20 10001272 . T . . END=10001274 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20 10001275 . A . . END=10001277 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10001278 . A . . END=10001281 GT:DP:GQ:MIN_DP:PL 0/0:29:78:27:0,78,1170 +20 10001282 . C . . END=10001282 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10001283 . T . . END=10001287 GT:DP:GQ:MIN_DP:PL 0/0:29:73:28:0,73,790 +20 10001288 . T . . END=10001288 GT:DP:GQ:MIN_DP:PL 0/0:29:58:29:0,58,802 +20 10001289 . T . . END=10001289 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10001290 . T . . END=10001290 GT:DP:GQ:MIN_DP:PL 0/0:26:55:26:0,55,756 +20 10001291 . T . . END=10001294 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20 10001295 . G . . END=10001297 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,873 +20 10001298 . T A, 889.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:90:918,90,0,918,90,918:0,0,16,14 +20 10001299 . C . . END=10001300 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,826 +20 10001301 . G . . END=10001301 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,999 +20 10001302 . G . . END=10001302 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10001303 . A . . END=10001305 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10001306 . T . . END=10001307 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10001308 . G . . END=10001308 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,997 +20 10001309 . T . . END=10001313 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10001314 . T . . END=10001314 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,933 +20 10001315 . A . . END=10001315 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1009 +20 10001316 . T . . END=10001316 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,992 +20 10001317 . A . . END=10001318 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,987 +20 10001319 . G . . END=10001319 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10001320 . A . . END=10001334 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,998 +20 10001335 . C . . END=10001335 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,969 +20 10001336 . C . . END=10001358 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,943 +20 10001359 . G . . END=10001359 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1026 +20 10001360 . T . . END=10001388 GT:DP:GQ:MIN_DP:PL 0/0:42:99:36:0,99,993 +20 10001389 . A . . END=10001392 GT:DP:GQ:MIN_DP:PL 0/0:43:93:42:0,93,1395 +20 10001393 . T . . END=10001402 GT:DP:GQ:MIN_DP:PL 0/0:44:72:43:0,72,1080 +20 10001403 . A . . END=10001407 GT:DP:GQ:MIN_DP:PL 0/0:44:60:42:0,60,900 +20 10001408 . C . . END=10001408 GT:DP:GQ:MIN_DP:PL 0/0:43:57:43:0,57,855 +20 10001409 . A . . END=10001410 GT:DP:GQ:MIN_DP:PL 0/0:44:51:44:0,51,765 +20 10001411 . T . . END=10001411 GT:DP:GQ:MIN_DP:PL 0/0:44:45:44:0,45,675 +20 10001412 . A . . END=10001412 GT:DP:GQ:MIN_DP:PL 0/0:44:39:44:0,39,585 +20 10001413 . T . . END=10001415 GT:DP:GQ:MIN_DP:PL 0/0:44:36:43:0,36,540 +20 10001416 . A . . END=10001421 GT:DP:GQ:MIN_DP:PL 0/0:43:33:39:0,33,495 +20 10001422 . C . . END=10001422 GT:DP:GQ:MIN_DP:PL 0/0:40:27:40:0,27,405 +20 10001423 . T . . END=10001425 GT:DP:GQ:MIN_DP:PL 0/0:41:21:40:0,21,315 +20 10001426 . A . . END=10001431 GT:DP:GQ:MIN_DP:PL 0/0:41:18:40:0,18,270 +20 10001432 . A . . END=10001435 GT:DP:GQ:MIN_DP:PL 0/0:42:6:41:0,6,90 +20 10001436 . A AAGGCT, 1582.73 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1620,108,0,1620,108,1620:0,0,19,17 +20 10001437 . A . . END=10001437 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,0 +20 10001438 . G . . END=10001438 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10001439 . G . . END=10001442 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10001443 . C . . END=10001446 GT:DP:GQ:MIN_DP:PL 0/0:40:0:37:0,0,885 +20 10001447 . T . . END=10001447 GT:DP:GQ:MIN_DP:PL 0/0:36:59:36:0,59,1053 +20 10001448 . G . . END=10001448 GT:DP:GQ:MIN_DP:PL 0/0:34:46:34:0,46,957 +20 10001449 . T . . END=10001449 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10001450 . G . . END=10001450 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,1009 +20 10001451 . A . . END=10001451 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10001452 . T . . END=10001452 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1144 +20 10001453 . A . . END=10001453 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1170 +20 10001454 . T . . END=10001466 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1225 +20 10001467 . A . . END=10001467 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1159 +20 10001468 . A . . END=10001473 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1620 +20 10001474 . C T, 1205.77 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1234,117,0,1234,117,1234:0,0,21,18 +20 10001475 . G . . END=10001482 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10001483 . A . . END=10001483 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1204 +20 10001484 . A . . END=10001499 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,100,1202 +20 10001500 . G . . END=10001500 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1276 +20 10001501 . A . . END=10001508 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +20 10001509 . A . . END=10001509 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1262 +20 10001510 . A . . END=10001529 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1133 +20 10001530 . G . . END=10001533 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10001534 . T . . END=10001541 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10001542 . T . . END=10001543 GT:DP:GQ:MIN_DP:PL 0/0:33:75:32:0,75,1012 +20 10001544 . G . . END=10001545 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10001546 . T . . END=10001546 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,971 +20 10001547 . G . . END=10001557 GT:DP:GQ:MIN_DP:PL 0/0:32:84:29:0,84,1260 +20 10001558 . T . . END=10001558 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,903 +20 10001559 . A . . END=10001559 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10001560 . T . . END=10001560 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10001561 . T . . END=10001561 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,990 +20 10001562 . A . . END=10001563 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10001564 . T . . END=10001573 GT:DP:GQ:MIN_DP:PL 0/0:31:82:30:0,82,943 +20 10001574 . T . . END=10001574 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,950 +20 10001575 . C . . END=10001575 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,877 +20 10001576 . T . . END=10001577 GT:DP:GQ:MIN_DP:PL 0/0:32:83:31:0,83,989 +20 10001578 . A . . END=10001582 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10001583 . A . . END=10001583 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10001584 . G . . END=10001589 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,975 +20 10001590 . C . . END=10001590 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,966 +20 10001591 . T . . END=10001594 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10001595 . A . . END=10001595 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1005 +20 10001596 . A . . END=10001598 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1034 +20 10001599 . G . . END=10001599 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,946 +20 10001600 . A . . END=10001600 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10001601 . G . . END=10001609 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10001610 . A . . END=10001610 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10001611 . G . . END=10001621 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1044 +20 10001622 . T . . END=10001627 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10001628 . G A, 1090.77 . DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1119,110,0,1119,110,1119:0,0,21,16 +20 10001629 . G . . END=10001638 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1075 +20 10001639 . G . . END=10001641 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10001642 . G . . END=10001649 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10001650 . C . . END=10001650 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1015 +20 10001651 . T . . END=10001654 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10001655 . A . . END=10001655 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1109 +20 10001656 . A . . END=10001660 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,100,1121 +20 10001661 . T C, 1524.77 . DP=36;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,35,0:35:99:0|1:10001661_T_C:1553,105,0,1553,105,1553:0,0,14,21 +20 10001662 . T . . END=10001669 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1088 +20 10001670 . T G, 1554.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,36,0:36:99:0|1:10001661_T_C:1583,108,0,1583,108,1583:0,0,15,21 +20 10001671 . G . . END=10001708 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,103,1175 +20 10001709 . G . . END=10001709 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1289 +20 10001710 . C . . END=10001828 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,101,1174 +20 10001829 . G . . END=10001829 GT:DP:GQ:MIN_DP:PL 0/0:39:68:39:0,68,1136 +20 10001830 . C . . END=10001850 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20 10001851 . T . . END=10001851 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10001852 . G . . END=10001883 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1152 +20 10001884 . G . . END=10001884 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1146 +20 10001885 . C . . END=10001900 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1147 +20 10001901 . A . . END=10001901 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1086 +20 10001902 . G . . END=10001902 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1008 +20 10001903 . C . . END=10001904 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10001905 . C . . END=10001905 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,993 +20 10001906 . A . . END=10001907 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1080 +20 10001908 . G . . END=10001908 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,993 +20 10001909 . A . . END=10001911 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10001912 . C . . END=10001912 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1043 +20 10001913 . A . . END=10001915 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10001916 . G . . END=10001924 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 +20 10001925 . C . . END=10001925 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,933 +20 10001926 . A . . END=10001928 GT:DP:GQ:MIN_DP:PL 0/0:32:78:31:0,78,1170 +20 10001929 . G . . END=10001929 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,820 +20 10001930 . A . . END=10001931 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,825 +20 10001932 . T . . END=10001932 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10001933 . T . . END=10001933 GT:DP:GQ:MIN_DP:PL 0/0:32:70:32:0,70,939 +20 10001934 . A . . END=10001936 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,937 +20 10001937 . T . . END=10001937 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,889 +20 10001938 . G . . END=10001939 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,894 +20 10001940 . T . . END=10001940 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,910 +20 10001941 . T . . END=10001941 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10001942 . T . . END=10001943 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,957 +20 10001944 . A . . END=10001944 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10001945 . G . . END=10001945 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,992 +20 10001946 . A . . END=10001947 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10001948 . A . . END=10001948 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,994 +20 10001949 . A . . END=10001950 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10001951 . A . . END=10001951 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,996 +20 10001952 . G . . END=10001956 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10001957 . C . . END=10001957 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,990 +20 10001958 . A . . END=10001959 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10001960 . T . . END=10001960 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,960 +20 10001961 . G . . END=10001962 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10001963 . G . . END=10001963 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,887 +20 10001964 . A . . END=10001964 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10001965 . T . . END=10001981 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,908 +20 10001982 . T . . END=10001982 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,903 +20 10001983 . T . . END=10001983 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,898 +20 10001984 . C . . END=10001984 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,938 +20 10001985 . T . . END=10001985 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,930 +20 10001986 . G . . END=10002008 GT:DP:GQ:MIN_DP:PL 0/0:31:81:28:0,81,876 +20 10002009 . A . . END=10002009 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,951 +20 10002010 . T . . END=10002012 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10002013 . T . . END=10002013 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,980 +20 10002014 . T . . END=10002016 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10002017 . T . . END=10002018 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10002019 . A . . END=10002019 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,990 +20 10002020 . T . . END=10002021 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10002022 . A . . END=10002023 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10002024 . G . . END=10002024 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,897 +20 10002025 . A . . END=10002027 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10002028 . A . . END=10002030 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1085 +20 10002031 . C . . END=10002042 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1025 +20 10002043 . C . . END=10002043 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1008 +20 10002044 . T . . END=10002048 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1124 +20 10002049 . T . . END=10002049 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1117 +20 10002050 . C . . END=10002057 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,108,1162 +20 10002058 . T G, 1148.77 . DP=36;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1177,108,0,1177,108,1177:0,0,24,12 +20 10002059 . A . . END=10002062 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20 10002063 . A . . END=10002063 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1185 +20 10002064 . A . . END=10002068 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,103,1173 +20 10002069 . G . . END=10002069 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1126 +20 10002070 . A . . END=10002072 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10002073 . T . . END=10002073 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1127 +20 10002074 . C . . END=10002074 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10002075 . T . . END=10002077 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10002078 . A . . END=10002080 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20 10002081 . C . . END=10002085 GT:DP:GQ:MIN_DP:PL 0/0:36:96:33:0,96,1440 +20 10002086 . G . . END=10002098 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10002099 . C T, 281.77 . BaseQRankSum=-0.816;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=129600,36;ReadPosRankSum=-0.459 GT:AD:DP:GQ:PL:SB 0/1:22,14,0:36:99:310,0,563,376,605,982:14,8,10,4 +20 10002100 . T . . END=10002102 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10002103 . T . . END=10002103 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1012 +20 10002104 . T . . END=10002116 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1007 +20 10002117 . T . . END=10002117 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1084 +20 10002118 . A . . END=10002129 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,101,1104 +20 10002130 . G . . END=10002130 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1110 +20 10002131 . G . . END=10002137 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,100,1125 +20 10002138 . C G, 1613.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,37,0:37:99:0|1:10002138_C_G:1642,111,0,1642,111,1642:0,0,27,10 +20 10002139 . A . . END=10002141 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10002142 . G C, 1644.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,37,0:37:99:0|1:10002138_C_G:1673,114,0,1673,114,1673:0,0,27,10 +20 10002143 . T . . END=10002165 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10002166 . G T, 0 . BaseQRankSum=-1.674;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=0.777 GT:AD:DP:GQ:PL:SB 0/0:38,1,0:39:99:0,107,1136,114,1138,1145:25,13,1,0 +20 10002167 . G . . END=10002169 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10002170 . G . . END=10002170 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1086 +20 10002171 . G . . END=10002192 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1146 +20 10002193 . C . . END=10002193 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1112 +20 10002194 . C . . END=10002197 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10002198 . G . . END=10002198 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1127 +20 10002199 . A . . END=10002200 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1076 +20 10002201 . A . . END=10002201 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1078 +20 10002202 . G . . END=10002213 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,972 +20 10002214 . G . . END=10002214 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1129 +20 10002215 . A . . END=10002220 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10002221 . T . . END=10002221 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1181 +20 10002222 . A . . END=10002237 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,101,1148 +20 10002238 . G . . END=10002238 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1167 +20 10002239 . C . . END=10002404 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,102,1122 +20 10002405 . C . . END=10002405 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1151 +20 10002406 . T . . END=10002406 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +20 10002407 . G . . END=10002407 GT:DP:GQ:MIN_DP:PL 0/0:44:82:44:0,82,1208 +20 10002408 . G . . END=10002408 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1188 +20 10002409 . G . . END=10002414 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,115,1316 +20 10002415 . A . . END=10002415 GT:DP:GQ:MIN_DP:PL 0/0:40:55:40:0,55,1048 +20 10002416 . T . . END=10002418 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,100,1291 +20 10002419 . C . . END=10002419 GT:DP:GQ:MIN_DP:PL 0/0:41:72:41:0,72,1077 +20 10002420 . T . . END=10002420 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +20 10002421 . G . . END=10002421 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1122 +20 10002422 . T . . END=10002422 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10002423 . T . . END=10002423 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1245 +20 10002424 . G . . END=10002424 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1041 +20 10002425 . T . . END=10002425 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +20 10002426 . G . . END=10002426 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1027 +20 10002427 . T . . END=10002429 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10002430 . C . . END=10002433 GT:DP:GQ:MIN_DP:PL 0/0:40:90:39:0,90,1350 +20 10002434 . C . . END=10002439 GT:DP:GQ:MIN_DP:PL 0/0:40:81:36:0,81,1215 +20 10002440 . C . . END=10002442 GT:DP:GQ:MIN_DP:PL 0/0:36:72:36:0,72,1080 +20 10002443 . T . . END=10002445 GT:DP:GQ:MIN_DP:PL 0/0:35:60:35:0,60,900 +20 10002446 . T . . END=10002448 GT:DP:GQ:MIN_DP:PL 0/0:35:51:34:0,51,765 +20 10002449 . T . . END=10002450 GT:DP:GQ:MIN_DP:PL 0/0:34:48:32:0,48,720 +20 10002451 . T . . END=10002453 GT:DP:GQ:MIN_DP:PL 0/0:35:42:33:0,42,630 +20 10002454 . G . . END=10002454 GT:DP:GQ:MIN_DP:PL 0/0:36:17:36:0,17,856 +20 10002455 . A . . END=10002455 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,797 +20 10002456 . T . . END=10002456 GT:DP:GQ:MIN_DP:PL 0/0:37:30:37:0,30,954 +20 10002457 . A . . END=10002457 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,530 +20 10002458 . G GTT,GTTT, 1119.73 . DP=26;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=93600,26 GT:AD:DP:GQ:PL:SB 1/2:0,8,4,0:12:78:1157,165,78,207,0,120,781,162,204,698:0,0,7,5 +20 10002459 . T . . END=10002459 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,73 +20 10002460 . T . . END=10002469 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,990 +20 10002470 . C T, 1227.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:93:1256,93,0,1256,93,1256:0,0,17,13 +20 10002471 . T . . END=10002473 GT:DP:GQ:MIN_DP:PL 0/0:40:72:39:0,72,1080 +20 10002474 . T . . END=10002477 GT:DP:GQ:MIN_DP:PL 0/0:35:69:33:0,69,1035 +20 10002478 . A . . END=10002479 GT:DP:GQ:MIN_DP:PL 0/0:30:0:29:0,0,534 +20 10002480 . G . . END=10002480 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,758 +20 10002481 . A . . END=10002482 GT:DP:GQ:MIN_DP:PL 0/0:29:70:28:0,70,796 +20 10002483 . A . . END=10002483 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,724 +20 10002484 . T . . END=10002485 GT:DP:GQ:MIN_DP:PL 0/0:29:78:28:0,78,1170 +20 10002486 . G . . END=10002486 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,783 +20 10002487 . G . . END=10002487 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20 10002488 . G . . END=10002488 GT:DP:GQ:MIN_DP:PL 0/0:27:44:27:0,44,693 +20 10002489 . T . . END=10002489 GT:DP:GQ:MIN_DP:PL 0/0:28:64:28:0,64,780 +20 10002490 . T . . END=10002490 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,822 +20 10002491 . T . . END=10002491 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10002492 . C . . END=10002492 GT:DP:GQ:MIN_DP:PL 0/0:28:55:28:0,55,706 +20 10002493 . A . . END=10002493 GT:DP:GQ:MIN_DP:PL 0/0:26:25:26:0,25,644 +20 10002494 . C . . END=10002494 GT:DP:GQ:MIN_DP:PL 0/0:28:37:28:0,37,762 +20 10002495 . C . . END=10002495 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,810 +20 10002496 . A . . END=10002496 GT:DP:GQ:MIN_DP:PL 0/0:25:38:25:0,38,648 +20 10002497 . T . . END=10002497 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,945 +20 10002498 . G . . END=10002498 GT:DP:GQ:MIN_DP:PL 0/0:27:43:27:0,43,723 +20 10002499 . T . . END=10002499 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,796 +20 10002500 . T . . END=10002500 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,945 +20 10002501 . G . . END=10002501 GT:DP:GQ:MIN_DP:PL 0/0:26:34:26:0,34,727 +20 10002502 . G . . END=10002502 GT:DP:GQ:MIN_DP:PL 0/0:24:56:24:0,56,702 +20 10002503 . C . . END=10002503 GT:DP:GQ:MIN_DP:PL 0/0:25:26:25:0,26,625 +20 10002504 . C . . END=10002504 GT:DP:GQ:MIN_DP:PL 0/0:25:41:25:0,41,702 +20 10002505 . A . . END=10002506 GT:DP:GQ:MIN_DP:PL 0/0:23:66:22:0,66,643 +20 10002507 . G . . END=10002507 GT:DP:GQ:MIN_DP:PL 0/0:22:50:22:0,50,625 +20 10002508 . C . . END=10002508 GT:DP:GQ:MIN_DP:PL 0/0:20:59:20:0,59,596 +20 10002509 . T . . END=10002511 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,672 +20 10002512 . T . . END=10002513 GT:DP:GQ:MIN_DP:PL 0/0:24:71:24:0,71,631 +20 10002514 . G . . END=10002518 GT:DP:GQ:MIN_DP:PL 0/0:24:66:22:0,66,642 +20 10002519 . C . . END=10002519 GT:DP:GQ:MIN_DP:PL 0/0:23:53:23:0,53,685 +20 10002520 . T . . END=10002520 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20 10002521 . C . . END=10002521 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,738 +20 10002522 . C . . END=10002522 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,728 +20 10002523 . T . . END=10002523 GT:DP:GQ:MIN_DP:PL 0/0:26:56:26:0,56,766 +20 10002524 . G . . END=10002524 GT:DP:GQ:MIN_DP:PL 0/0:25:42:25:0,42,688 +20 10002525 . A . . END=10002525 GT:DP:GQ:MIN_DP:PL 0/0:24:50:24:0,50,650 +20 10002526 . C . . END=10002528 GT:DP:GQ:MIN_DP:PL 0/0:25:74:25:0,74,739 +20 10002529 . C . . END=10002529 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,742 +20 10002530 . A . . END=10002530 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,830 +20 10002531 . A . . END=10002533 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20 10002534 . G . . END=10002534 GT:DP:GQ:MIN_DP:PL 0/0:25:55:25:0,55,703 +20 10002535 . C . . END=10002542 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,753 +20 10002543 . A . . END=10002543 GT:DP:GQ:MIN_DP:PL 0/0:25:56:25:0,56,640 +20 10002544 . C . . END=10002545 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,742 +20 10002546 . G . . END=10002546 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,708 +20 10002547 . T . . END=10002548 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10002549 . G . . END=10002549 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,754 +20 10002550 . G . . END=10002551 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10002552 . A . . END=10002552 GT:DP:GQ:MIN_DP:PL 0/0:25:37:25:0,37,679 +20 10002553 . T . . END=10002554 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,753 +20 10002555 . A . . END=10002555 GT:DP:GQ:MIN_DP:PL 0/0:23:58:23:0,58,663 +20 10002556 . C . . END=10002556 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,704 +20 10002557 . A . . END=10002560 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,688 +20 10002561 . G . . END=10002562 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,792 +20 10002563 . G . . END=10002566 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20 10002567 . C . . END=10002567 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10002568 . A . . END=10002568 GT:DP:GQ:MIN_DP:PL 0/0:30:68:30:0,68,866 +20 10002569 . C . . END=10002569 GT:DP:GQ:MIN_DP:PL 0/0:26:77:26:0,77,738 +20 10002570 . C . . END=10002570 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10002571 . A . . END=10002571 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,753 +20 10002572 . C . . END=10002572 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,735 +20 10002573 . G . . END=10002573 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,650 +20 10002574 . C . . END=10002574 GT:DP:GQ:MIN_DP:PL 0/0:25:56:25:0,56,648 +20 10002575 . C . . END=10002575 GT:DP:GQ:MIN_DP:PL 0/0:26:62:26:0,62,727 +20 10002576 . C . . END=10002576 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10002577 . A . . END=10002577 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10002578 . G . . END=10002578 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,871 +20 10002579 . C . . END=10002580 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,874 +20 10002581 . A . . END=10002581 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,985 +20 10002582 . G . . END=10002582 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,929 +20 10002583 . A . . END=10002586 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10002587 . T . . END=10002601 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,994 +20 10002602 . T . . END=10002606 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10002607 . C . . END=10002616 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1055 +20 10002617 . A . . END=10002617 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10002618 . A . . END=10002624 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20 10002625 . G T, 1000.77 . DP=32;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=115200,32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1029,96,0,1029,96,1029:0,0,17,15 +20 10002626 . G . . END=10002626 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,985 +20 10002627 . C . . END=10002627 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10002628 . A . . END=10002628 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1002 +20 10002629 . T . . END=10002629 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10002630 . T . . END=10002630 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1049 +20 10002631 . A . . END=10002633 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10002634 . G . . END=10002634 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1035 +20 10002635 . A . . END=10002644 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,988 +20 10002645 . T . . END=10002645 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1109 +20 10002646 . T . . END=10002647 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10002648 . T . . END=10002648 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1122 +20 10002649 . A . . END=10002663 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1023 +20 10002664 . G . . END=10002665 GT:DP:GQ:MIN_DP:PL 0/0:39:86:38:0,86,1119 +20 10002666 . G . . END=10002667 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,104,1150 +20 10002668 . G . . END=10002668 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1136 +20 10002669 . T . . END=10002669 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1190 +20 10002670 . C . . END=10002671 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1170 +20 10002672 . C . . END=10002672 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,100,1142 +20 10002673 . A . . END=10002673 GT:DP:GQ:MIN_DP:PL 0/0:39:66:39:0,66,1168 +20 10002674 . A . . END=10002674 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10002675 . G . . END=10002675 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1092 +20 10002676 . A . . END=10002676 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,106,1175 +20 10002677 . T . . END=10002677 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1196 +20 10002678 . A . . END=10002678 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1184 +20 10002679 . T . . END=10002681 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10002682 . A . . END=10002683 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1189 +20 10002684 . C . . END=10002685 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10002686 . C . . END=10002687 GT:DP:GQ:MIN_DP:PL 0/0:38:80:37:0,80,1093 +20 10002688 . A . . END=10002688 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10002689 . A . . END=10002689 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1171 +20 10002690 . A . . END=10002691 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1271 +20 10002692 . G . . END=10002692 GT:DP:GQ:MIN_DP:PL 0/0:41:74:41:0,74,1119 +20 10002693 . A . . END=10002693 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10002694 . A . . END=10002695 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1125 +20 10002696 . C . . END=10002696 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1160 +20 10002697 . T . . END=10002697 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10002698 . T . . END=10002698 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1227 +20 10002699 . C . . END=10002700 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,102,1530 +20 10002701 . C . . END=10002701 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1263 +20 10002702 . A . . END=10002702 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1358 +20 10002703 . A . . END=10002716 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,100,1347 +20 10002717 . G . . END=10002717 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1158 +20 10002718 . A . . END=10002906 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,100,1183 +20 10002907 . G . . END=10002907 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1196 +20 10002908 . C . . END=10002923 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10002924 . A . . END=10002924 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1118 +20 10002925 . A . . END=10002933 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10002934 . C . . END=10002935 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10002936 . C . . END=10002936 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10002937 . A . . END=10002939 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10002940 . C . . END=10002944 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10002945 . C . . END=10002955 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10002956 . A . . END=10002956 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1102 +20 10002957 . G . . END=10002958 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10002959 . T . . END=10002962 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +20 10002963 . A . . END=10002967 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10002968 . T . . END=10002980 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1196 +20 10002981 . G . . END=10002982 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10002983 . T . . END=10002984 GT:DP:GQ:MIN_DP:PL 0/0:36:87:35:0,87,1305 +20 10002985 . T . . END=10002985 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20 10002986 . G . . END=10002992 GT:DP:GQ:MIN_DP:PL 0/0:36:81:32:0,81,1215 +20 10002993 . T . . END=10002993 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,971 +20 10002994 . T . . END=10002998 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10002999 . G . . END=10002999 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,908 +20 10003000 . A . . END=10003003 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10003004 . C . . END=10003009 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10003010 . G . . END=10003012 GT:DP:GQ:MIN_DP:PL 0/0:28:66:27:0,66,990 +20 10003013 . A . . END=10003015 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10003016 . T . . END=10003016 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,809 +20 10003017 . C . . END=10003019 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20 10003020 . C . . END=10003020 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10003021 . C T, 799.77 . DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=97200,27 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:828,78,0,828,78,828:0,0,14,12 +20 10003022 . G . . END=10003024 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,853 +20 10003025 . C . . END=10003025 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,805 +20 10003026 . T . . END=10003030 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,889 +20 10003031 . T . . END=10003034 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,921 +20 10003035 . G . . END=10003035 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,845 +20 10003036 . T . . END=10003050 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,970 +20 10003051 . G . . END=10003051 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,981 +20 10003052 . C . . END=10003055 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1040 +20 10003056 . T . . END=10003056 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1083 +20 10003057 . G . . END=10003057 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1068 +20 10003058 . A . . END=10003063 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10003064 . G . . END=10003064 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1030 +20 10003065 . G . . END=10003071 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1087 +20 10003072 . T . . END=10003072 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1013 +20 10003073 . A . . END=10003076 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10003077 . T . . END=10003077 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,1002 +20 10003078 . G . . END=10003083 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,958 +20 10003084 . A . . END=10003084 GT:DP:GQ:MIN_DP:PL 0/0:32:73:32:0,73,928 +20 10003085 . G . . END=10003087 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10003088 . G . . END=10003088 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,965 +20 10003089 . G . . END=10003099 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,948 +20 10003100 . T . . END=10003100 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,986 +20 10003101 . G . . END=10003101 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1002 +20 10003102 . T . . END=10003107 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10003108 . C . . END=10003115 GT:DP:GQ:MIN_DP:PL 0/0:36:81:33:0,81,1215 +20 10003116 . A . . END=10003116 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +20 10003117 . G . . END=10003117 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +20 10003118 . C . . END=10003128 GT:DP:GQ:MIN_DP:PL 0/0:32:75:28:0,75,878 +20 10003129 . G . . END=10003129 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,735 +20 10003130 . T . . END=10003130 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20 10003131 . C . . END=10003131 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10003132 . C . . END=10003132 GT:DP:GQ:MIN_DP:PL 0/0:30:56:30:0,56,804 +20 10003133 . C . . END=10003133 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10003134 . A . . END=10003134 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10003135 . A . . END=10003135 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,727 +20 10003136 . G . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,776 +20 10003137 . A . . END=10003142 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20 10003143 . A . . END=10003145 GT:DP:GQ:MIN_DP:PL 0/0:30:84:28:0,84,848 +20 10003146 . G . . END=10003146 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,906 +20 10003147 . G . . END=10003147 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,876 +20 10003148 . T . . END=10003149 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,987 +20 10003150 . A . . END=10003150 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,953 +20 10003151 . A . . END=10003151 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10003152 . A . . END=10003152 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,978 +20 10003153 . C . . END=10003153 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10003154 . A . . END=10003154 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1041 +20 10003155 . T . . END=10003158 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,998 +20 10003159 . G . . END=10003160 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1009 +20 10003161 . C . . END=10003175 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10003176 . A . . END=10003186 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20 10003187 . C . . END=10003190 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10003191 . T . . END=10003195 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1006 +20 10003196 . G . . END=10003199 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10003200 . C . . END=10003200 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,931 +20 10003201 . C . . END=10003204 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10003205 . A . . END=10003205 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1006 +20 10003206 . C . . END=10003206 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10003207 . C . . END=10003210 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,912 +20 10003211 . T . . END=10003211 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10003212 . G . . END=10003212 GT:DP:GQ:MIN_DP:PL 0/0:34:76:34:0,76,989 +20 10003213 . A . . END=10003214 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10003215 . A . . END=10003215 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1058 +20 10003216 . T . . END=10003217 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10003218 . A . . END=10003218 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1042 +20 10003219 . A . . END=10003230 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1001 +20 10003231 . A . . END=10003231 GT:DP:GQ:MIN_DP:PL 0/0:33:58:33:0,58,921 +20 10003232 . T . . END=10003254 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,105,1100 +20 10003255 . T . . END=10003255 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1140 +20 10003256 . C . . END=10003267 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10003268 . T . . END=10003268 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1071 +20 10003269 . A . . END=10003276 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1094 +20 10003277 . T . . END=10003281 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1052 +20 10003282 . A . . END=10003282 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10003283 . A . . END=10003286 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10003287 . A . . END=10003292 GT:DP:GQ:MIN_DP:PL 0/0:33:81:30:0,81,1215 +20 10003293 . C . . END=10003297 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,1080 +20 10003298 . A . . END=10003298 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,841 +20 10003299 . T . . END=10003305 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,1080 +20 10003306 . G . . END=10003306 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10003307 . A . . END=10003309 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +20 10003310 . A . . END=10003316 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10003317 . T . . END=10003321 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1001 +20 10003322 . T . . END=10003322 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,942 +20 10003323 . C . . END=10003327 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10003328 . G . . END=10003328 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,950 +20 10003329 . T . . END=10003341 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10003342 . T . . END=10003342 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,907 +20 10003343 . T . . END=10003343 GT:DP:GQ:MIN_DP:PL 0/0:29:64:29:0,64,824 +20 10003344 . C . . END=10003347 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,914 +20 10003348 . T . . END=10003350 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,953 +20 10003351 . T . . END=10003351 GT:DP:GQ:MIN_DP:PL 0/0:31:73:31:0,73,876 +20 10003352 . C . . END=10003354 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10003355 . A . . END=10003359 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10003360 . T . . END=10003360 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10003361 . G . . END=10003361 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,976 +20 10003362 . G . . END=10003364 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,954 +20 10003365 . A . . END=10003365 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,933 +20 10003366 . G . . END=10003366 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10003367 . G . . END=10003367 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,892 +20 10003368 . A . . END=10003369 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10003370 . A . . END=10003376 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,945 +20 10003377 . A . . END=10003378 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10003379 . T . . END=10003379 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,881 +20 10003380 . C . . END=10003380 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10003381 . T . . END=10003381 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,942 +20 10003382 . T . . END=10003389 GT:DP:GQ:MIN_DP:PL 0/0:31:80:30:0,80,908 +20 10003390 . G . . END=10003391 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10003392 . C . . END=10003394 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10003395 . C . . END=10003395 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,898 +20 10003396 . A . . END=10003401 GT:DP:GQ:MIN_DP:PL 0/0:31:82:29:0,82,909 +20 10003402 . C . . END=10003407 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,947 +20 10003408 . G . . END=10003408 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,948 +20 10003409 . A . . END=10003418 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,928 +20 10003419 . G . . END=10003420 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,882 +20 10003421 . C . . END=10003423 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10003424 . A . . END=10003424 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,951 +20 10003425 . C . . END=10003425 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,867 +20 10003426 . A . . END=10003435 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10003436 . T . . END=10003436 GT:DP:GQ:MIN_DP:PL 0/0:29:60:29:0,60,869 +20 10003437 . C . . END=10003442 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,889 +20 10003443 . A . . END=10003443 GT:DP:GQ:MIN_DP:PL 0/0:30:67:30:0,67,906 +20 10003444 . C . . END=10003445 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,1080 +20 10003446 . G T, 206.77 . BaseQRankSum=-0.852;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=104400,29;ReadPosRankSum=-1.061 GT:AD:DP:GQ:PL:SB 0/1:16,11,0:27:99:235,0,418,283,451,735:7,9,4,7 +20 10003447 . C . . END=10003449 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +20 10003450 . C . . END=10003457 GT:DP:GQ:MIN_DP:PL 0/0:26:62:24:0,62,733 +20 10003458 . A . . END=10003458 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,720 +20 10003459 . C . . END=10003482 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,596 +20 10003483 . G . . END=10003483 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10003484 . C . . END=10003491 GT:DP:GQ:MIN_DP:PL 0/0:24:63:23:0,63,709 +20 10003492 . T . . END=10003492 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,710 +20 10003493 . T . . END=10003497 GT:DP:GQ:MIN_DP:PL 0/0:25:64:24:0,64,720 +20 10003498 . A . . END=10003498 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10003499 . T . . END=10003499 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +20 10003500 . C . . END=10003507 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,822 +20 10003508 . G . . END=10003525 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,871 +20 10003526 . T . . END=10003526 GT:DP:GQ:MIN_DP:PL 0/0:29:65:29:0,65,827 +20 10003527 . C . . END=10003527 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,821 +20 10003528 . T . . END=10003538 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10003539 . C . . END=10003540 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10003541 . T . . END=10003542 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10003543 . C . . END=10003547 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10003548 . G . . END=10003548 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10003549 . A . . END=10003549 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10003550 . A . . END=10003550 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,951 +20 10003551 . T . . END=10003552 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10003553 . C . . END=10003553 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,937 +20 10003554 . A . . END=10003563 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,878 +20 10003564 . C . . END=10003566 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,902 +20 10003567 . C . . END=10003567 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,904 +20 10003568 . C . . END=10003570 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10003571 . T . . END=10003571 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,977 +20 10003572 . T . . END=10003574 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,995 +20 10003575 . T . . END=10003575 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,945 +20 10003576 . C . . END=10003578 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,975 +20 10003579 . A . . END=10003584 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1023 +20 10003585 . C . . END=10003586 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10003587 . A . . END=10003588 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10003589 . T . . END=10003589 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10003590 . T . . END=10003602 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10003603 . T . . END=10003603 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,989 +20 10003604 . T . . END=10003619 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1027 +20 10003620 . A . . END=10003621 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10003622 . G . . END=10003622 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,984 +20 10003623 . T . . END=10003623 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10003624 . A . . END=10003624 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,994 +20 10003625 . C . . END=10003629 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1017 +20 10003630 . A . . END=10003632 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10003633 . T . . END=10003633 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,980 +20 10003634 . C . . END=10003635 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10003636 . A . . END=10003639 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10003640 . A . . END=10003641 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20 10003642 . C . . END=10003642 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10003643 . A . . END=10003643 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1003 +20 10003644 . C . . END=10003649 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10003650 . G . . END=10003650 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10003651 . T C, 902.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:90:931,90,0,931,90,931:0,0,17,13 +20 10003652 . C . . END=10003660 GT:DP:GQ:MIN_DP:PL 0/0:32:84:29:0,84,850 +20 10003661 . T . . END=10003665 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,930 +20 10003666 . T . . END=10003666 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10003667 . T . . END=10003668 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10003669 . A . . END=10003672 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,994 +20 10003673 . T . . END=10003676 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10003677 . T . . END=10003677 GT:DP:GQ:MIN_DP:PL 0/0:32:62:32:0,62,904 +20 10003678 . C . . END=10003684 GT:DP:GQ:MIN_DP:PL 0/0:30:82:30:0,82,956 +20 10003685 . C . . END=10003685 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10003686 . C . . END=10003687 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10003688 . A . . END=10003688 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10003689 . T . . END=10003691 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,936 +20 10003692 . A G, 880.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:90:909,90,0,909,90,909:0,0,17,13 +20 10003693 . T . . END=10003693 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1029 +20 10003694 . T . . END=10003696 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10003697 . T . . END=10003698 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10003699 . A . . END=10003699 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10003700 . A . . END=10003701 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,959 +20 10003702 . T . . END=10003704 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10003705 . T . . END=10003705 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10003706 . A . . END=10003706 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1030 +20 10003707 . A . . END=10003707 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1037 +20 10003708 . A . . END=10003730 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10003731 . T . . END=10003731 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10003732 . C . . END=10003732 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10003733 . T . . END=10003831 GT:DP:GQ:MIN_DP:PL 0/0:44:99:34:0,99,1201 +20 10003832 . G A, 1242.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1271,123,0,1271,123,1271:0,0,19,22 +20 10003833 . T . . END=10003911 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,111,1411 +20 10003912 . C . . END=10003912 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1254 +20 10003913 . A . . END=10003945 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,104,1194 +20 10003946 . T . . END=10003946 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1211 +20 10003947 . A . . END=10003955 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1253 +20 10003956 . C . . END=10003956 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1153 +20 10003957 . T . . END=10003971 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,104,1184 +20 10003972 . A . . END=10003972 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1237 +20 10003973 . G . . END=10003984 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,104,1220 +20 10003985 . A . . END=10003985 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1279 +20 10003986 . A . . END=10003987 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +20 10003988 . G . . END=10003988 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1169 +20 10003989 . A . . END=10004004 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,102,1189 +20 10004005 . C . . END=10004005 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1093 +20 10004006 . A . . END=10004023 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,100,1199 +20 10004024 . C . . END=10004026 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 +20 10004027 . T . . END=10004028 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10004029 . C . . END=10004029 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10004030 . T . . END=10004038 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10004039 . T . . END=10004039 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1115 +20 10004040 . G . . END=10004093 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,102,976 +20 10004094 . A C, 1426.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=169200,47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1455,140,0,1455,140,1455:0,0,25,22 +20 10004095 . C . . END=10004145 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,101,1112 +20 10004146 . C . . END=10004146 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1111 +20 10004147 . A G, 946.77 . DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=126000,35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:975,103,0,975,103,975:0,0,16,19 +20 10004148 . G . . END=10004148 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1201 +20 10004149 . G . . END=10004149 GT:DP:GQ:MIN_DP:PL 0/0:42:77:42:0,77,1076 +20 10004150 . A . . END=10004150 GT:DP:GQ:MIN_DP:PL 0/0:41:83:41:0,83,1062 +20 10004151 . G . . END=10004155 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,111,1003 +20 10004156 . A . . END=10004156 GT:DP:GQ:MIN_DP:PL 0/0:43:71:43:0,71,1172 +20 10004157 . G . . END=10004159 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,109,1236 +20 10004160 . T . . END=10004160 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1083 +20 10004161 . G . . END=10004161 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20 10004162 . C . . END=10004162 GT:DP:GQ:MIN_DP:PL 0/0:42:83:42:0,83,1169 +20 10004163 . A . . END=10004164 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,114,1141 +20 10004165 . T . . END=10004165 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1079 +20 10004166 . G . . END=10004169 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,120,1237 +20 10004170 . C . . END=10004170 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1053 +20 10004171 . G . . END=10004172 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,114,1710 +20 10004173 . G . . END=10004173 GT:DP:GQ:MIN_DP:PL 0/0:42:84:42:0,84,1144 +20 10004174 . A . . END=10004174 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +20 10004175 . T . . END=10004175 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1189 +20 10004176 . C . . END=10004188 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,108,1052 +20 10004189 . T . . END=10004189 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1063 +20 10004190 . C . . END=10004195 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,102,1152 +20 10004196 . T . . END=10004196 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,985 +20 10004197 . G . . END=10004199 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10004200 . C . . END=10004200 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,977 +20 10004201 . G . . END=10004202 GT:DP:GQ:MIN_DP:PL 0/0:39:93:38:0,93,1395 +20 10004203 . C . . END=10004203 GT:DP:GQ:MIN_DP:PL 0/0:37:64:37:0,64,935 +20 10004204 . A . . END=10004206 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1350 +20 10004207 . G . . END=10004209 GT:DP:GQ:MIN_DP:PL 0/0:38:81:35:0,81,1215 +20 10004210 . A . . END=10004211 GT:DP:GQ:MIN_DP:PL 0/0:37:72:37:0,72,1080 +20 10004212 . A . . END=10004212 GT:DP:GQ:MIN_DP:PL 0/0:37:66:37:0,66,990 +20 10004213 . T . . END=10004213 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,855 +20 10004214 . T . . END=10004214 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,810 +20 10004215 . C . . END=10004215 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,855 +20 10004216 . T . . END=10004216 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,810 +20 10004217 . G . . END=10004218 GT:DP:GQ:MIN_DP:PL 0/0:37:51:36:0,51,765 +20 10004219 . C . . END=10004219 GT:DP:GQ:MIN_DP:PL 0/0:34:48:34:0,48,720 +20 10004220 . T . . END=10004220 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,675 +20 10004221 . C . . END=10004221 GT:DP:GQ:MIN_DP:PL 0/0:36:51:36:0,51,765 +20 10004222 . C . . END=10004222 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,689 +20 10004223 . A AG, 87.73 . BaseQRankSum=0.803;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.355;RAW_MQandDP=97316,28;ReadPosRankSum=1.088 GT:AD:DP:GQ:PL:SB 0/1:13,8,0:21:99:125,0,211,162,235,398:5,8,5,3 +20 10004224 . A G, 122.77 . BaseQRankSum=-0.544;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.069;RAW_MQandDP=97316,28;ReadPosRankSum=0.459 GT:AD:DP:GQ:PL:SB 0/1:11,10,0:21:99:151,0,199,184,228,412:5,6,5,5 +20 10004225 . A . . END=10004225 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10004226 . A . . END=10004240 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,99,1485 +20 10004241 . G . . END=10004243 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1174 +20 10004244 . G . . END=10004244 GT:DP:GQ:MIN_DP:PL 0/0:41:72:41:0,72,1140 +20 10004245 . T . . END=10004245 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1292 +20 10004246 . A . . END=10004252 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10004253 . A . . END=10004253 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1082 +20 10004254 . T . . END=10004258 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,111,1168 +20 10004259 . G . . END=10004259 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1145 +20 10004260 . T . . END=10004271 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,115,1234 +20 10004272 . C . . END=10004272 GT:DP:GQ:MIN_DP:PL 0/0:46:83:46:0,83,1301 +20 10004273 . T . . END=10004350 GT:DP:GQ:MIN_DP:PL 0/0:51:99:44:0,100,1310 +20 10004351 . C G, 1492.77 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=198000,55 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1521,157,0,1521,157,1521:0,0,30,23 +20 10004352 . A . . END=10004388 GT:DP:GQ:MIN_DP:PL 0/0:58:99:53:0,112,1582 +20 10004389 . T G, 1328.77 . BaseQRankSum=1.767;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=183600,51;ReadPosRankSum=1.412 GT:AD:DP:GQ:PL:SB 1/1:1,49,0:50:99:1357,138,0,1360,144,1367:1,0,24,25 +20 10004390 . G . . END=10004434 GT:DP:GQ:MIN_DP:PL 0/0:49:99:46:0,107,1370 +20 10004435 . G . . END=10004435 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1373 +20 10004436 . T . . END=10004446 GT:DP:GQ:MIN_DP:PL 0/0:47:99:46:0,106,1414 +20 10004447 . A . . END=10004447 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1356 +20 10004448 . A . . END=10004454 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,99,1349 +20 10004455 . A . . END=10004460 GT:DP:GQ:MIN_DP:PL 0/0:43:90:41:0,90,1078 +20 10004461 . G . . END=10004461 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +20 10004462 . C . . END=10004462 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1207 +20 10004463 . A . . END=10004463 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20 10004464 . G . . END=10004465 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1135 +20 10004466 . T . . END=10004466 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10004467 . T . . END=10004467 GT:DP:GQ:MIN_DP:PL 0/0:40:77:40:0,77,1187 +20 10004468 . A . . END=10004468 GT:DP:GQ:MIN_DP:PL 0/0:39:66:39:0,66,1159 +20 10004469 . A . . END=10004469 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1184 +20 10004470 . C . . END=10004472 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10004473 . A . . END=10004474 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10004475 . T . . END=10004510 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1114 +20 10004511 . T . . END=10004511 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1183 +20 10004512 . T . . END=10004525 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1242 +20 10004526 . A . . END=10004526 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1202 +20 10004527 . A . . END=10004534 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1182 +20 10004535 . T . . END=10004535 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1184 +20 10004536 . T . . END=10004554 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1115 +20 10004555 . G . . END=10004555 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1066 +20 10004556 . A . . END=10004560 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,103,1151 +20 10004561 . A . . END=10004561 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1117 +20 10004562 . A . . END=10004568 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1395 +20 10004569 . A . . END=10004578 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1119 +20 10004579 . C . . END=10004579 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1154 +20 10004580 . T . . END=10004609 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,111,1209 +20 10004610 . A C, 1308.77 . DP=45;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=162000,45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1337,134,0,1337,134,1337:0,0,25,20 +20 10004611 . C . . END=10004691 GT:DP:GQ:MIN_DP:PL 0/0:46:99:39:0,100,1230 +20 10004692 . T . . END=10004692 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1281 +20 10004693 . A . . END=10004722 GT:DP:GQ:MIN_DP:PL 0/0:46:99:39:0,117,1129 +20 10004723 . T . . END=10004734 GT:DP:GQ:MIN_DP:PL 0/0:44:93:42:0,93,1395 +20 10004735 . C . . END=10004747 GT:DP:GQ:MIN_DP:PL 0/0:43:72:39:0,72,1080 +20 10004748 . C . . END=10004755 GT:DP:GQ:MIN_DP:PL 0/0:40:81:39:0,81,1215 +20 10004756 . C . . END=10004767 GT:DP:GQ:MIN_DP:PL 0/0:41:72:40:0,72,1080 +20 10004768 . C . . END=10004768 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,990 +20 10004769 . TAAAACTATGC T, 497.73 . BaseQRankSum=0.822;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=0.874 GT:AD:DP:GQ:PL:SB 0/1:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004780 . A . . END=10004780 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,277 +20 10004781 . A . . END=10004782 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10004783 . A . . END=10004783 GT:DP:GQ:MIN_DP:PL 0/0:40:44:40:0,44,1109 +20 10004784 . C . . END=10004786 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,106,1181 +20 10004787 . T . . END=10004787 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,1173 +20 10004788 . G . . END=10004873 GT:DP:GQ:MIN_DP:PL 0/0:49:99:40:0,99,1277 +20 10004874 . A C, 1715.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=169200,47 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,47,0:47:99:0|1:10004874_A_C:1744,141,0,1744,141,1744:0,0,22,25 +20 10004875 . T . . END=10004886 GT:DP:GQ:MIN_DP:PL 0/0:51:99:49:0,115,1498 +20 10004887 . A G, 482.77 . BaseQRankSum=-2.421;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=172800,48;ReadPosRankSum=2.049 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:27,21,0:48:99:0|1:10004874_A_C:511,0,709,592,771,1363:14,13,11,10 +20 10004888 . A . . END=10005009 GT:DP:GQ:MIN_DP:PL 0/0:50:99:44:0,108,1306 +20 10005010 . C T, 1337.77 . DP=45;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=162000,45 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1366,129,0,1366,129,1366:0,0,21,22 +20 10005011 . G . . END=10005023 GT:DP:GQ:MIN_DP:PL 0/0:50:99:49:0,120,1800 +20 10005024 . C . . END=10005024 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1434 +20 10005025 . T . . END=10005163 GT:DP:GQ:MIN_DP:PL 0/0:53:99:45:0,119,1471 +20 10005164 . C . . END=10005164 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1285 +20 10005165 . C . . END=10005204 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,111,1196 +20 10005205 . C . . END=10005205 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1227 +20 10005206 . A . . END=10005426 GT:DP:GQ:MIN_DP:PL 0/0:54:99:43:0,117,1344 +20 10005427 . C T, 1464.77 . BaseQRankSum=1.772;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=180000,50;ReadPosRankSum=-0.725 GT:AD:DP:GQ:PL:SB 1/1:1,48,0:49:99:1493,136,0,1496,143,1503:1,0,24,24 +20 10005428 . A . . END=10005498 GT:DP:GQ:MIN_DP:PL 0/0:52:99:47:0,120,1800 +20 10005499 . A G, 1616.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=190800,53 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1645,155,0,1645,155,1645:0,0,26,26 +20 10005500 . T . . END=10005619 GT:DP:GQ:MIN_DP:PL 0/0:49:99:42:0,109,1334 +20 10005620 . T . . END=10005620 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1306 +20 10005621 . T . . END=10005722 GT:DP:GQ:MIN_DP:PL 0/0:50:99:41:0,114,1274 +20 10005723 . A G, 1408.77 . DP=51;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=183600,51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1437,152,0,1437,152,1437:0,0,29,22 +20 10005724 . A . . END=10006063 GT:DP:GQ:MIN_DP:PL 0/0:52:99:38:0,99,1164 +20 10006064 . C . . END=10006064 GT:DP:GQ:MIN_DP:PL 0/0:41:80:41:0,80,1121 +20 10006065 . T . . END=10006069 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,120,1800 +20 10006070 . G . . END=10006070 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1159 +20 10006071 . A . . END=10006111 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1256 +20 10006112 . A . . END=10006112 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1060 +20 10006113 . C . . END=10006113 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1059 +20 10006114 . A . . END=10006120 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10006121 . T . . END=10006126 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20 10006127 . T . . END=10006127 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1038 +20 10006128 . T . . END=10006131 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10006132 . A . . END=10006135 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10006136 . G . . END=10006136 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1030 +20 10006137 . T . . END=10006137 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10006138 . T . . END=10006138 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1060 +20 10006139 . C . . END=10006142 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10006143 . A . . END=10006148 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10006149 . A . . END=10006149 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10006150 . G . . END=10006158 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10006159 . G . . END=10006159 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1005 +20 10006160 . A . . END=10006164 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10006165 . C . . END=10006189 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1038 +20 10006190 . T . . END=10006190 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1141 +20 10006191 . G . . END=10006202 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10006203 . A . . END=10006210 GT:DP:GQ:MIN_DP:PL 0/0:35:93:32:0,93,1395 +20 10006211 . A . . END=10006211 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10006212 . G . . END=10006214 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10006215 . T . . END=10006218 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10006219 . T . . END=10006219 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1054 +20 10006220 . G . . END=10006222 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10006223 . A . . END=10006224 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10006225 . A . . END=10006383 GT:DP:GQ:MIN_DP:PL 0/0:52:99:37:0,99,1162 +20 10006384 . T . . END=10006384 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1158 +20 10006385 . A . . END=10006403 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,102,1530 +20 10006404 . A C, 1032.77 . BaseQRankSum=1.719;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=-0.539 GT:AD:DP:GQ:PL:SB 1/1:1,36,0:37:99:1061,100,0,1064,107,1071:0,1,15,21 +20 10006405 . C . . END=10006410 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1159 +20 10006411 . T . . END=10006411 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1080 +20 10006412 . T . . END=10006412 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1050 +20 10006413 . C . . END=10006428 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,110,1191 +20 10006429 . T . . END=10006429 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1131 +20 10006430 . A . . END=10006446 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10006447 . G . . END=10006447 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1144 +20 10006448 . A . . END=10006455 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10006456 . T . . END=10006456 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1165 +20 10006457 . A . . END=10006464 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1154 +20 10006465 . G . . END=10006465 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1163 +20 10006466 . G . . END=10006476 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1127 +20 10006477 . G . . END=10006477 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1083 +20 10006478 . A . . END=10006673 GT:DP:GQ:MIN_DP:PL 0/0:46:99:37:0,106,1199 +20 10006674 . T . . END=10006674 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1255 +20 10006675 . C . . END=10006681 GT:DP:GQ:MIN_DP:PL 0/0:45:99:44:0,120,1800 +20 10006682 . T A, 1370.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=168516,47 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1399,137,0,1399,137,1399:0,0,26,20 +20 10006683 . A . . END=10006756 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,100,1074 +20 10006757 . G . . END=10006757 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1139 +20 10006758 . A . . END=10006774 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1196 +20 10006775 . T . . END=10006780 GT:DP:GQ:MIN_DP:PL 0/0:40:90:39:0,90,1350 +20 10006781 . C . . END=10006783 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1215 +20 10006784 . T . . END=10006789 GT:DP:GQ:MIN_DP:PL 0/0:39:72:37:0,72,1080 +20 10006790 . T . . END=10006799 GT:DP:GQ:MIN_DP:PL 0/0:40:60:36:0,60,900 +20 10006800 . A . . END=10006804 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,855 +20 10006805 . G . . END=10006806 GT:DP:GQ:MIN_DP:PL 0/0:40:54:40:0,54,810 +20 10006807 . C . . END=10006807 GT:DP:GQ:MIN_DP:PL 0/0:41:48:41:0,48,720 +20 10006808 . C . . END=10006808 GT:DP:GQ:MIN_DP:PL 0/0:38:45:38:0,45,675 +20 10006809 . C . . END=10006810 GT:DP:GQ:MIN_DP:PL 0/0:42:39:42:0,39,585 +20 10006811 . A . . END=10006814 GT:DP:GQ:MIN_DP:PL 0/0:43:42:41:0,42,630 +20 10006815 . C . . END=10006815 GT:DP:GQ:MIN_DP:PL 0/0:42:39:42:0,39,585 +20 10006816 . T . . END=10006817 GT:DP:GQ:MIN_DP:PL 0/0:42:30:42:0,30,450 +20 10006818 . A . . END=10006818 GT:DP:GQ:MIN_DP:PL 0/0:42:24:42:0,24,360 +20 10006819 . AAAAC A, 1220.73 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=141700,39 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006824 . A . . END=10006824 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,0 +20 10006825 . A . . END=10006826 GT:DP:GQ:MIN_DP:PL 0/0:44:93:43:0,93,1395 +20 10006827 . C . . END=10006846 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,99,1237 +20 10006847 . C . . END=10006847 GT:DP:GQ:MIN_DP:PL 0/0:42:77:42:0,77,1173 +20 10006848 . A . . END=10006848 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20 10006849 . A . . END=10006849 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1203 +20 10006850 . A . . END=10006888 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,106,1163 +20 10006889 . A . . END=10006889 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1261 +20 10006890 . A . . END=10006891 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,107,1197 +20 10006892 . T . . END=10006892 GT:DP:GQ:MIN_DP:PL 0/0:42:68:42:0,68,1168 +20 10006893 . A . . END=10006899 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,114,1189 +20 10006900 . G . . END=10006900 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1147 +20 10006901 . C . . END=10006912 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,111,1665 +20 10006913 . A . . END=10006913 GT:DP:GQ:MIN_DP:PL 0/0:39:79:39:0,79,1123 +20 10006914 . A . . END=10006916 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1134 +20 10006917 . G . . END=10006918 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1117 +20 10006919 . A . . END=10006924 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1189 +20 10006925 . T . . END=10006925 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1267 +20 10006926 . A . . END=10006928 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +20 10006929 . A . . END=10006929 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1257 +20 10006930 . A . . END=10006943 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,111,1263 +20 10006944 . G . . END=10006944 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1121 +20 10006945 . T . . END=10007001 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,105,1400 +20 10007002 . A . . END=10007002 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1168 +20 10007003 . T . . END=10007038 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,102,1241 +20 10007039 . T . . END=10007039 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1320 +20 10007040 . G . . END=10007042 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,117,1755 +20 10007043 . G A, 723.77 . BaseQRankSum=2.406;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=151200,42;ReadPosRankSum=0.482 GT:AD:DP:GQ:PL:SB 0/1:14,27,0:41:99:752,0,298,794,379,1174:7,7,17,10 +20 10007044 . G . . END=10007079 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,101,1168 +20 10007080 . G . . END=10007080 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1144 +20 10007081 . G . . END=10007083 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10007084 . A . . END=10007087 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10007088 . A . . END=10007097 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1088 +20 10007098 . A . . END=10007105 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10007106 . T . . END=10007106 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1119 +20 10007107 . G . . END=10007110 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10007111 . C . . END=10007111 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10007112 . A . . END=10007112 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,1041 +20 10007113 . G . . END=10007114 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1063 +20 10007115 . G . . END=10007115 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,983 +20 10007116 . T . . END=10007116 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,983 +20 10007117 . C . . END=10007117 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,1002 +20 10007118 . T . . END=10007118 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1028 +20 10007119 . C . . END=10007127 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1031 +20 10007128 . T . . END=10007128 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1227 +20 10007129 . G . . END=10007130 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +20 10007131 . T . . END=10007132 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1219 +20 10007133 . G . . END=10007135 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,104,1210 +20 10007136 . C . . END=10007136 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1207 +20 10007137 . A . . END=10007140 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1206 +20 10007141 . T . . END=10007141 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1296 +20 10007142 . G . . END=10007146 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +20 10007147 . T . . END=10007147 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1165 +20 10007148 . C . . END=10007149 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,114,1710 +20 10007150 . G C, 170.77 . BaseQRankSum=-2.939;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=-0.160 GT:AD:DP:GQ:PL:SB 0/1:29,11,0:40:99:199,0,798,286,831,1118:19,10,7,4 +20 10007151 . G . . END=10007167 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1530 +20 10007168 . C . . END=10007168 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1133 +20 10007169 . T . . END=10007174 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1079 +20 10007175 . C . . END=10007175 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1076 +20 10007176 . T . . END=10007190 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1138 +20 10007191 . C . . END=10007191 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1084 +20 10007192 . A . . END=10007193 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1159 +20 10007194 . G . . END=10007194 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1080 +20 10007195 . G . . END=10007233 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1001 +20 10007234 . T . . END=10007234 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1098 +20 10007235 . C . . END=10007255 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1028 +20 10007256 . T . . END=10007256 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1012 +20 10007257 . C . . END=10007266 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1132 +20 10007267 . T . . END=10007267 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10007268 . G . . END=10007275 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10007276 . G . . END=10007276 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1087 +20 10007277 . C . . END=10007277 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10007278 . T . . END=10007286 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1027 +20 10007287 . A . . END=10007287 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10007288 . G . . END=10007291 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10007292 . A . . END=10007292 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1063 +20 10007293 . C . . END=10007305 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,995 +20 10007306 . A . . END=10007306 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1041 +20 10007307 . G . . END=10007313 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10007314 . A . . END=10007322 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10007323 . G . . END=10007323 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1012 +20 10007324 . A . . END=10007334 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1051 +20 10007335 . T . . END=10007335 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1036 +20 10007336 . C . . END=10007337 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1051 +20 10007338 . C . . END=10007341 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10007342 . C . . END=10007350 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10007351 . C . . END=10007351 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,998 +20 10007352 . C T, 1121.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1150,110,0,1150,110,1150:0,0,10,27 +20 10007353 . A . . END=10007376 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10007377 . T . . END=10007377 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1069 +20 10007378 . T . . END=10007388 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1131 +20 10007389 . A . . END=10007389 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1139 +20 10007390 . A . . END=10007419 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1241 +20 10007420 . T C, 383.77 . BaseQRankSum=-3.784;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=1.034 GT:AD:DP:GQ:PL:SB 0/1:18,19,0:37:99:412,0,447,466,504,970:12,6,6,13 +20 10007421 . G . . END=10007456 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,103,1174 +20 10007457 . A . . END=10007457 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1201 +20 10007458 . C . . END=10007465 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,106,1195 +20 10007466 . T . . END=10007466 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1248 +20 10007467 . A . . END=10007491 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,105,1226 +20 10007492 . A . . END=10007492 GT:DP:GQ:MIN_DP:PL 0/0:45:98:45:0,98,1302 +20 10007493 . A . . END=10007530 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,115,1290 +20 10007531 . A G, 1199.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154800,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1228,127,0,1228,127,1228:0,0,29,14 +20 10007532 . G . . END=10007574 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,108,1304 +20 10007575 . C T, 471.77 . BaseQRankSum=-0.249;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=-0.891 GT:AD:DP:GQ:PL:SB 0/1:17,20,0:37:99:500,0,413,551,473,1024:11,6,11,9 +20 10007576 . C . . END=10007576 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1178 +20 10007577 . C . . END=10007581 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,113,1265 +20 10007582 . T . . END=10007582 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1258 +20 10007583 . C . . END=10007612 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,100,1172 +20 10007613 . C . . END=10007613 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1117 +20 10007614 . A . . END=10007620 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10007621 . A . . END=10007628 GT:DP:GQ:MIN_DP:PL 0/0:36:90:32:0,90,1350 +20 10007629 . A . . END=10007629 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1059 +20 10007630 . A . . END=10007631 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1148 +20 10007632 . G . . END=10007632 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1113 +20 10007633 . A . . END=10007634 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10007635 . T . . END=10007635 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1036 +20 10007636 . C . . END=10007639 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10007640 . T . . END=10007640 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10007641 . C . . END=10007641 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10007642 . A . . END=10007642 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10007643 . A . . END=10007644 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10007645 . T . . END=10007645 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10007646 . C . . END=10007646 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10007647 . T . . END=10007647 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10007648 . G . . END=10007649 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1440 +20 10007650 . C . . END=10007652 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10007653 . A . . END=10007654 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10007655 . G . . END=10007659 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10007660 . C . . END=10007660 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1176 +20 10007661 . A . . END=10007691 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,100,1184 +20 10007692 . C . . END=10007692 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1251 +20 10007693 . C . . END=10007834 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,103,1287 +20 10007835 . T C, 510.77 . BaseQRankSum=-4.583;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=0.073 GT:AD:DP:GQ:PL:SB 0/1:15,24,0:39:99:539,0,382,584,453,1038:3,12,13,11 +20 10007836 . G . . END=10007863 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,105,1159 +20 10007864 . G . . END=10007864 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1177 +20 10007865 . A . . END=10007875 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1165 +20 10007876 . T . . END=10007876 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1205 +20 10007877 . A . . END=10007959 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,106,1315 +20 10007960 . A . . END=10007960 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1409 +20 10007961 . T . . END=10007979 GT:DP:GQ:MIN_DP:PL 0/0:47:99:46:0,117,1413 +20 10007980 . A C, 1278.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154800,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1307,128,0,1307,128,1307:0,0,19,24 +20 10007981 . A . . END=10007982 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,105,1575 +20 10007983 . C . . END=10007985 GT:DP:GQ:MIN_DP:PL 0/0:45:93:45:0,93,1395 +20 10007986 . A . . END=10007994 GT:DP:GQ:MIN_DP:PL 0/0:45:84:44:0,84,1260 +20 10007995 . G . . END=10007998 GT:DP:GQ:MIN_DP:PL 0/0:43:72:43:0,72,1080 +20 10007999 . G . . END=10008008 GT:DP:GQ:MIN_DP:PL 0/0:43:60:41:0,60,900 +20 10008009 . G . . END=10008009 GT:DP:GQ:MIN_DP:PL 0/0:46:57:46:0,57,855 +20 10008010 . A . . END=10008010 GT:DP:GQ:MIN_DP:PL 0/0:46:48:46:0,48,720 +20 10008011 . A . . END=10008011 GT:DP:GQ:MIN_DP:PL 0/0:46:45:46:0,45,675 +20 10008012 . G . . END=10008012 GT:DP:GQ:MIN_DP:PL 0/0:46:42:46:0,42,630 +20 10008013 . A . . END=10008013 GT:DP:GQ:MIN_DP:PL 0/0:47:45:47:0,45,675 +20 10008014 . C . . END=10008014 GT:DP:GQ:MIN_DP:PL 0/0:47:42:47:0,42,630 +20 10008015 . C . . END=10008015 GT:DP:GQ:MIN_DP:PL 0/0:46:39:46:0,39,585 +20 10008016 . A . . END=10008017 GT:DP:GQ:MIN_DP:PL 0/0:46:27:46:0,27,405 +20 10008018 . A . . END=10008018 GT:DP:GQ:MIN_DP:PL 0/0:45:24:45:0,24,360 +20 10008019 . T . . END=10008020 GT:DP:GQ:MIN_DP:PL 0/0:43:21:41:0,21,315 +20 10008021 . G . . END=10008021 GT:DP:GQ:MIN_DP:PL 0/0:41:18:41:0,18,270 +20 10008022 . A . . END=10008023 GT:DP:GQ:MIN_DP:PL 0/0:44:12:44:0,12,180 +20 10008024 . A . . END=10008024 GT:DP:GQ:MIN_DP:PL 0/0:46:9:46:0,9,135 +20 10008025 . A . . END=10008026 GT:DP:GQ:MIN_DP:PL 0/0:48:12:47:0,12,180 +20 10008027 . A . . END=10008027 GT:DP:GQ:MIN_DP:PL 0/0:47:15:47:0,15,225 +20 10008028 . A . . END=10008028 GT:DP:GQ:MIN_DP:PL 0/0:49:18:49:0,18,270 +20 10008029 . T TA,TAA, 1206.73 . DP=42;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=151200,42 GT:AD:DP:GQ:PL:SB 1/2:0,17,22,0:39:99:1244,629,524,416,0,337,1157,615,414,1113:0,0,17,22 +20 10008030 . A . . END=10008030 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +20 10008031 . A . . END=10008032 GT:DP:GQ:MIN_DP:PL 0/0:48:82:47:0,82,1361 +20 10008033 . A . . END=10008038 GT:DP:GQ:MIN_DP:PL 0/0:49:99:47:0,120,1800 +20 10008039 . G . . END=10008039 GT:DP:GQ:MIN_DP:PL 0/0:44:26:44:0,26,1086 +20 10008040 . A . . END=10008040 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,113,1254 +20 10008041 . T . . END=10008041 GT:DP:GQ:MIN_DP:PL 0/0:44:70:44:0,70,1165 +20 10008042 . G . . END=10008042 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1105 +20 10008043 . T . . END=10008043 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +20 10008044 . C . . END=10008044 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1007 +20 10008045 . A . . END=10008045 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1233 +20 10008046 . T . . END=10008046 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1166 +20 10008047 . A . . END=10008101 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,103,1214 +20 10008102 . A . . END=10008103 GT:DP:GQ:MIN_DP:PL 0/0:45:90:45:0,90,1350 +20 10008104 . A . . END=10008106 GT:DP:GQ:MIN_DP:PL 0/0:44:84:40:0,84,1260 +20 10008107 . A . . END=10008111 GT:DP:GQ:MIN_DP:PL 0/0:43:72:41:0,72,1080 +20 10008112 . T . . END=10008116 GT:DP:GQ:MIN_DP:PL 0/0:44:60:43:0,60,900 +20 10008117 . C . . END=10008120 GT:DP:GQ:MIN_DP:PL 0/0:47:54:46:0,54,810 +20 10008121 . A . . END=10008121 GT:DP:GQ:MIN_DP:PL 0/0:49:51:49:0,51,765 +20 10008122 . T . . END=10008122 GT:DP:GQ:MIN_DP:PL 0/0:49:48:49:0,48,720 +20 10008123 . A . . END=10008123 GT:DP:GQ:MIN_DP:PL 0/0:48:45:48:0,45,675 +20 10008124 . T . . END=10008127 GT:DP:GQ:MIN_DP:PL 0/0:48:42:47:0,42,630 +20 10008128 . T . . END=10008129 GT:DP:GQ:MIN_DP:PL 0/0:49:39:48:0,39,585 +20 10008130 . T . . END=10008132 GT:DP:GQ:MIN_DP:PL 0/0:49:27:44:0,27,405 +20 10008133 . C . . END=10008137 GT:DP:GQ:MIN_DP:PL 0/0:50:21:48:0,21,315 +20 10008138 . T . . END=10008138 GT:DP:GQ:MIN_DP:PL 0/0:50:18:50:0,18,270 +20 10008139 . C . . END=10008139 GT:DP:GQ:MIN_DP:PL 0/0:53:15:53:0,15,225 +20 10008140 . T . . END=10008140 GT:DP:GQ:MIN_DP:PL 0/0:55:9:55:0,9,135 +20 10008141 . C . . END=10008142 GT:DP:GQ:MIN_DP:PL 0/0:55:6:54:0,6,90 +20 10008143 . C . . END=10008145 GT:DP:GQ:MIN_DP:PL 0/0:53:0:51:0,0,0 +20 10008146 . TA T, 1330.73 . DP=48;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=174100,48 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008148 . A . . END=10008148 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,0 +20 10008149 . A . . END=10008180 GT:DP:GQ:MIN_DP:PL 0/0:51:99:46:0,120,1800 +20 10008181 . G . . END=10008181 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1297 +20 10008182 . A . . END=10008194 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,103,1289 +20 10008195 . C . . END=10008195 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1201 +20 10008196 . T . . END=10008197 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1530 +20 10008198 . T . . END=10008198 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1236 +20 10008199 . A . . END=10008203 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,102,1530 +20 10008204 . A . . END=10008205 GT:DP:GQ:MIN_DP:PL 0/0:39:90:38:0,90,1166 +20 10008206 . T . . END=10008208 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1198 +20 10008209 . T . . END=10008210 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10008211 . A . . END=10008217 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1240 +20 10008218 . T . . END=10008218 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1244 +20 10008219 . T . . END=10008219 GT:DP:GQ:MIN_DP:PL 0/0:43:86:43:0,86,1222 +20 10008220 . C . . END=10008220 GT:DP:GQ:MIN_DP:PL 0/0:43:77:43:0,77,1143 +20 10008221 . T C, 1010.77 . DP=36;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=130900,36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1039,106,0,1039,106,1039:0,0,20,16 +20 10008222 . T . . END=10008245 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,105,1268 +20 10008246 . T . . END=10008246 GT:DP:GQ:MIN_DP:PL 0/0:47:91:47:0,91,1314 +20 10008247 . T . . END=10008388 GT:DP:GQ:MIN_DP:PL 0/0:57:99:47:0,110,1465 +20 10008389 . A G, 645.77 . BaseQRankSum=-3.469;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=205200,57;ReadPosRankSum=0.498 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:674,0,697,752,783,1535:17,9,14,15 +20 10008390 . T . . END=10008457 GT:DP:GQ:MIN_DP:PL 0/0:59:99:48:0,119,1721 +20 10008458 . T G, 1369.77 . DP=48;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=172800,48 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1398,138,0,1398,138,1398:0,0,24,22 +20 10008459 . A . . END=10008625 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,107,1140 +20 10008626 . T . . END=10008626 GT:DP:GQ:MIN_DP:PL 0/0:48:86:48:0,86,1316 +20 10008627 . A . . END=10008707 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,99,1095 +20 10008708 . A . . END=10008709 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1440 +20 10008710 . C . . END=10008711 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +20 10008712 . A . . END=10008715 GT:DP:GQ:MIN_DP:PL 0/0:43:90:41:0,90,1350 +20 10008716 . C . . END=10008725 GT:DP:GQ:MIN_DP:PL 0/0:40:84:38:0,84,1260 +20 10008726 . A . . END=10008731 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1080 +20 10008732 . G . . END=10008737 GT:DP:GQ:MIN_DP:PL 0/0:40:60:37:0,60,900 +20 10008738 . C . . END=10008738 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,765 +20 10008739 . C . . END=10008741 GT:DP:GQ:MIN_DP:PL 0/0:41:48:38:0,48,720 +20 10008742 . G T, 513.77 . BaseQRankSum=3.650;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-1.113;RAW_MQandDP=120601,35;ReadPosRankSum=0.221 GT:AD:DP:GQ:PL:SB 0/1:13,20,0:33:99:542,0,265,581,325,907:7,6,10,10 +20 10008743 . T . . END=10008744 GT:DP:GQ:MIN_DP:PL 0/0:41:42:40:0,42,630 +20 10008745 . T . . END=10008746 GT:DP:GQ:MIN_DP:PL 0/0:40:36:40:0,36,540 +20 10008747 . T . . END=10008749 GT:DP:GQ:MIN_DP:PL 0/0:39:30:38:0,30,450 +20 10008750 . T . . END=10008750 GT:DP:GQ:MIN_DP:PL 0/0:40:12:40:0,12,936 +20 10008751 . A . . END=10008753 GT:DP:GQ:MIN_DP:PL 0/0:42:21:41:0,21,315 +20 10008754 . A . . END=10008755 GT:DP:GQ:MIN_DP:PL 0/0:43:24:42:0,24,360 +20 10008756 . T . . END=10008756 GT:DP:GQ:MIN_DP:PL 0/0:43:21:43:0,21,315 +20 10008757 . A . . END=10008757 GT:DP:GQ:MIN_DP:PL 0/0:44:18:44:0,18,270 +20 10008758 . C CA,CAA, 766.73 . DP=37;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=127801,37 GT:AD:DP:GQ:PL:SB 1/2:0,20,11,0:31:99:804,284,194,434,0,396,767,275,433,745:0,0,14,17 +20 10008759 . A . . END=10008759 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,0 +20 10008760 . A . . END=10008772 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,102,1530 +20 10008773 . T . . END=10008773 GT:DP:GQ:MIN_DP:PL 0/0:42:34:42:0,34,1130 +20 10008774 . T . . END=10008774 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20 10008775 . A . . END=10008775 GT:DP:GQ:MIN_DP:PL 0/0:44:35:44:0,35,1209 +20 10008776 . G . . END=10008776 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1223 +20 10008777 . C . . END=10008805 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,107,1204 +20 10008806 . C . . END=10008806 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1167 +20 10008807 . A . . END=10008859 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1056 +20 10008860 . T . . END=10008860 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1039 +20 10008861 . G . . END=10008887 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1132 +20 10008888 . C . . END=10008888 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1079 +20 10008889 . T . . END=10008890 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10008891 . C . . END=10008891 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1121 +20 10008892 . A . . END=10008901 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1107 +20 10008902 . A . . END=10008906 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 +20 10008907 . G . . END=10008910 GT:DP:GQ:MIN_DP:PL 0/0:36:81:30:0,81,1215 +20 10008911 . G . . END=10008913 GT:DP:GQ:MIN_DP:PL 0/0:36:75:35:0,75,1125 +20 10008914 . A . . END=10008920 GT:DP:GQ:MIN_DP:PL 0/0:34:63:32:0,63,945 +20 10008921 . C . . END=10008921 GT:DP:GQ:MIN_DP:PL 0/0:31:6:31:0,6,658 +20 10008922 . A . . END=10008930 GT:DP:GQ:MIN_DP:PL 0/0:37:57:33:0,57,855 +20 10008931 . A . . END=10008931 GT:DP:GQ:MIN_DP:PL 0/0:40:54:40:0,54,810 +20 10008932 . A . . END=10008932 GT:DP:GQ:MIN_DP:PL 0/0:41:57:41:0,57,855 +20 10008933 . A . . END=10008934 GT:DP:GQ:MIN_DP:PL 0/0:39:54:38:0,54,810 +20 10008935 . T . . END=10008935 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,807 +20 10008936 . C . . END=10008936 GT:DP:GQ:MIN_DP:PL 0/0:40:39:40:0,39,974 +20 10008937 . A . . END=10008937 GT:DP:GQ:MIN_DP:PL 0/0:40:45:40:0,45,675 +20 10008938 . A . . END=10008938 GT:DP:GQ:MIN_DP:PL 0/0:40:42:40:0,42,630 +20 10008939 . T . . END=10008939 GT:DP:GQ:MIN_DP:PL 0/0:39:35:39:0,35,950 +20 10008940 . T . . END=10008940 GT:DP:GQ:MIN_DP:PL 0/0:39:2:39:0,2,898 +20 10008941 . A . . END=10008942 GT:DP:GQ:MIN_DP:PL 0/0:39:39:38:0,39,585 +20 10008943 . A . . END=10008943 GT:DP:GQ:MIN_DP:PL 0/0:38:36:38:0,36,540 +20 10008944 . T . . END=10008944 GT:DP:GQ:MIN_DP:PL 0/0:38:33:38:0,33,495 +20 10008945 . A . . END=10008946 GT:DP:GQ:MIN_DP:PL 0/0:38:30:38:0,30,450 +20 10008947 . T . . END=10008947 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,894 +20 10008948 . TA T, 1368.73 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=117801,33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1406,99,0,1406,99,1406:0,0,15,18 +20 10008950 . A . . END=10008951 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,0 +20 10008952 . CACACACACA C,CCACACA, 1277.73 . DP=36;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=128601,36 GT:AD:DP:GQ:PL:SB 1/2:0,12,15,0:27:99:1315,648,719,505,0,439,1243,714,512,1282:0,0,12,15 +20 10008962 . C . . END=10008963 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1154 +20 10008964 . C . . END=10008979 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,99,1485 +20 10008980 . C . . END=10008980 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1276 +20 10008981 . A . . END=10008992 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,99,1342 +20 10008993 . A . . END=10008993 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1233 +20 10008994 . C . . END=10008994 GT:DP:GQ:MIN_DP:PL 0/0:44:61:44:0,61,1238 +20 10008995 . A . . END=10008996 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1262 +20 10008997 . C . . END=10009012 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,109,1342 +20 10009013 . G . . END=10009013 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1273 +20 10009014 . G . . END=10009060 GT:DP:GQ:MIN_DP:PL 0/0:46:99:36:0,99,1287 +20 10009061 . T . . END=10009068 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1055 +20 10009069 . T . . END=10009070 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1017 +20 10009071 . G . . END=10009071 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10009072 . C . . END=10009072 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,924 +20 10009073 . C . . END=10009073 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1009 +20 10009074 . T . . END=10009074 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10009075 . A . . END=10009076 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1080 +20 10009077 . A . . END=10009091 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1159 +20 10009092 . A . . END=10009092 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1178 +20 10009093 . A . . END=10009094 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,114,1710 +20 10009095 . T . . END=10009095 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1177 +20 10009096 . T . . END=10009096 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1256 +20 10009097 . A . . END=10009194 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1123 +20 10009195 . A . . END=10009195 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1189 +20 10009196 . C . . END=10009226 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1142 +20 10009227 . A G, 611.77 . BaseQRankSum=-0.113;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=-1.119 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,24,0:40:99:0|1:10009227_A_G:640,0,377,688,449,1137:6,10,13,11 +20 10009228 . G . . END=10009228 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1151 +20 10009229 . C . . END=10009245 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1245 +20 10009246 . A G, 1283.77 . BaseQRankSum=1.559;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=1.721 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:1,35,0:36:99:0|1:10009227_A_G:1312,101,0,1314,108,1321:0,1,19,16 +20 10009247 . A . . END=10009252 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,101,1068 +20 10009253 . T . . END=10009253 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1104 +20 10009254 . A . . END=10009256 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10009257 . T . . END=10009257 GT:DP:GQ:MIN_DP:PL 0/0:37:61:37:0,61,955 +20 10009258 . G . . END=10009274 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1042 +20 10009275 . T . . END=10009275 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1203 +20 10009276 . T . . END=10009283 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,114,1710 +20 10009284 . G . . END=10009284 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1247 +20 10009285 . G . . END=10009399 GT:DP:GQ:MIN_DP:PL 0/0:50:99:40:0,99,1183 +20 10009400 . T A, 1827.77 . DP=58;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=208800,58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1856,174,0,1856,174,1856:0,0,31,27 +20 10009401 . A . . END=10009511 GT:DP:GQ:MIN_DP:PL 0/0:59:99:55:0,113,1581 +20 10009512 . C G, 1549.77 . DP=54;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=194400,54 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1578,158,0,1578,158,1578:0,0,30,23 +20 10009513 . A . . END=10009525 GT:DP:GQ:MIN_DP:PL 0/0:55:99:54:0,120,1800 +20 10009526 . T C, 0 . BaseQRankSum=-1.994;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=190800,53;ReadPosRankSum=-0.645 GT:AD:DP:GQ:PL:SB 0/0:50,2,0:52:99:0,119,1416,148,1422,1451:29,21,1,1 +20 10009527 . T . . END=10009718 GT:DP:GQ:MIN_DP:PL 0/0:55:99:47:0,120,1800 +20 10009719 . A G, 688.77 . BaseQRankSum=-3.827;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=201600,56;ReadPosRankSum=-1.459 GT:AD:DP:GQ:PL:SB 0/1:24,32,0:56:99:717,0,596,789,691,1480:8,16,20,12 +20 10009720 . T . . END=10009794 GT:DP:GQ:MIN_DP:PL 0/0:53:99:43:0,120,1800 +20 10009795 . A G, 1400.77 . DP=45;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=162000,45 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1429,132,0,1429,132,1429:0,0,22,22 +20 10009796 . C . . END=10009813 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,105,1575 +20 10009814 . C . . END=10009814 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10009815 . C . . END=10009820 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,1062 +20 10009821 . C . . END=10009825 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10009826 . A . . END=10009827 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10009828 . A . . END=10009828 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10009829 . A . . END=10009829 GT:DP:GQ:MIN_DP:PL 0/0:37:57:37:0,57,855 +20 10009830 . G . . END=10009830 GT:DP:GQ:MIN_DP:PL 0/0:38:60:38:0,60,900 +20 10009831 . A . . END=10009832 GT:DP:GQ:MIN_DP:PL 0/0:37:54:36:0,54,810 +20 10009833 . A . . END=10009833 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,630 +20 10009834 . G . . END=10009834 GT:DP:GQ:MIN_DP:PL 0/0:37:45:37:0,45,675 +20 10009835 . A . . END=10009835 GT:DP:GQ:MIN_DP:PL 0/0:36:48:36:0,48,720 +20 10009836 . A . . END=10009838 GT:DP:GQ:MIN_DP:PL 0/0:39:51:38:0,51,765 +20 10009839 . A . . END=10009840 GT:DP:GQ:MIN_DP:PL 0/0:37:57:36:0,57,855 +20 10009841 . A . . END=10009843 GT:DP:GQ:MIN_DP:PL 0/0:35:54:34:0,54,810 +20 10009844 . G A, 1265.77 . DP=32;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=115200,32 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,31,0:31:93:0|1:10009844_G_A:1294,93,0,1294,93,1294:0,0,17,14 +20 10009845 . A . . END=10009848 GT:DP:GQ:MIN_DP:PL 0/0:34:57:32:0,57,855 +20 10009849 . A . . END=10009856 GT:DP:GQ:MIN_DP:PL 0/0:34:60:32:0,60,900 +20 10009857 . A . . END=10009861 GT:DP:GQ:MIN_DP:PL 0/0:36:72:34:0,72,1080 +20 10009862 . G . . END=10009868 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 +20 10009869 . A . . END=10009870 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 +20 10009871 . A G, 1636.77 . DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,37,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665:0,0,15,22 +20 10009872 . G . . END=10009874 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10009875 . A G, 1636.77 . DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,37,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665:0,0,15,22 +20 10009876 . G . . END=10009878 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10009879 . A G, 1546.77 . DP=36;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,35,0:35:99:0|1:10009844_G_A:1575,105,0,1575,105,1575:0,0,15,20 +20 10009880 . G . . END=10009880 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10009881 . A . . END=10009881 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1053 +20 10009882 . G . . END=10009882 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10009883 . A G, 1456.77 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,33,0:33:99:0|1:10009844_G_A:1485,99,0,1485,99,1485:0,0,13,20 +20 10009884 . G . . END=10009884 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1025 +20 10009885 . A . . END=10009885 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1020 +20 10009886 . A . . END=10009898 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,101,1001 +20 10009899 . G . . END=10009899 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,971 +20 10009900 . A . . END=10009901 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1064 +20 10009902 . G . . END=10009902 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1007 +20 10009903 . G . . END=10009904 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10009905 . A . . END=10009905 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1124 +20 10009906 . G . . END=10009906 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,900 +20 10009907 . G . . END=10009956 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,100,1080 +20 10009957 . A . . END=10009957 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1341 +20 10009958 . A . . END=10010045 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,99,1204 +20 10010046 . G . . END=10010049 GT:DP:GQ:MIN_DP:PL 0/0:38:93:35:0,93,1395 +20 10010050 . C . . END=10010050 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1062 +20 10010051 . A . . END=10010054 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10010055 . T . . END=10010057 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1027 +20 10010058 . A . . END=10010068 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10010069 . A . . END=10010076 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10010077 . A . . END=10010077 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1080 +20 10010078 . A . . END=10010085 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1046 +20 10010086 . C . . END=10010094 GT:DP:GQ:MIN_DP:PL 0/0:36:92:34:0,92,1055 +20 10010095 . A . . END=10010100 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10010101 . T . . END=10010101 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1012 +20 10010102 . T . . END=10010105 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,998 +20 10010106 . G . . END=10010106 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,993 +20 10010107 . A . . END=10010108 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10010109 . A . . END=10010109 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1059 +20 10010110 . T . . END=10010122 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,114,1127 +20 10010123 . C . . END=10010123 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1199 +20 10010124 . A . . END=10010272 GT:DP:GQ:MIN_DP:PL 0/0:43:99:34:0,99,1057 +20 10010273 . A . . END=10010276 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10010277 . G . . END=10010277 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10010278 . T . . END=10010287 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1032 +20 10010288 . A . . END=10010288 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1037 +20 10010289 . A . . END=10010293 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10010294 . T . . END=10010295 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,970 +20 10010296 . A . . END=10010296 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10010297 . A . . END=10010298 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10010299 . A . . END=10010300 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20 10010301 . A . . END=10010301 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10010302 . A . . END=10010312 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20 10010313 . G . . END=10010313 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1056 +20 10010314 . A . . END=10010315 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10010316 . G . . END=10010316 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,981 +20 10010317 . T . . END=10010319 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10010320 . T . . END=10010320 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1105 +20 10010321 . A . . END=10010322 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10010323 . G . . END=10010323 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1055 +20 10010324 . T . . END=10010329 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1037 +20 10010330 . T . . END=10010351 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,960 +20 10010352 . T . . END=10010352 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10010353 . T . . END=10010353 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1058 +20 10010354 . C . . END=10010355 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1095 +20 10010356 . C . . END=10010358 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10010359 . T . . END=10010363 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10010364 . A . . END=10010365 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10010366 . A . . END=10010370 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10010371 . T . . END=10010371 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10010372 . T . . END=10010373 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10010374 . A . . END=10010374 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1090 +20 10010375 . C . . END=10010392 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1485 +20 10010393 . T G, 501.77 . BaseQRankSum=-1.738;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=140400,39;ReadPosRankSum=-0.390 GT:AD:DP:GQ:PL:SB 0/1:18,21,0:39:99:530,0,466,584,530,1113:10,8,12,9 +20 10010394 . T . . END=10010394 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10010395 . G . . END=10010395 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1142 +20 10010396 . G . . END=10010494 GT:DP:GQ:MIN_DP:PL 0/0:49:99:37:0,102,1157 +20 10010495 . A . . END=10010497 GT:DP:GQ:MIN_DP:PL 0/0:51:90:50:0,90,1350 +20 10010498 . A . . END=10010501 GT:DP:GQ:MIN_DP:PL 0/0:52:81:51:0,81,1215 +20 10010502 . A . . END=10010504 GT:DP:GQ:MIN_DP:PL 0/0:52:72:50:0,72,1080 +20 10010505 . G . . END=10010508 GT:DP:GQ:MIN_DP:PL 0/0:53:63:52:0,63,945 +20 10010509 . T . . END=10010511 GT:DP:GQ:MIN_DP:PL 0/0:51:54:50:0,54,810 +20 10010512 . T . . END=10010513 GT:DP:GQ:MIN_DP:PL 0/0:52:51:51:0,51,765 +20 10010514 . A . . END=10010516 GT:DP:GQ:MIN_DP:PL 0/0:51:48:51:0,48,720 +20 10010517 . A . . END=10010517 GT:DP:GQ:MIN_DP:PL 0/0:54:45:54:0,45,675 +20 10010518 . G . . END=10010518 GT:DP:GQ:MIN_DP:PL 0/0:54:39:54:0,39,585 +20 10010519 . T . . END=10010522 GT:DP:GQ:MIN_DP:PL 0/0:52:33:52:0,33,495 +20 10010523 . G . . END=10010528 GT:DP:GQ:MIN_DP:PL 0/0:53:24:52:0,24,360 +20 10010529 . T . . END=10010531 GT:DP:GQ:MIN_DP:PL 0/0:53:21:53:0,21,315 +20 10010532 . A . . END=10010532 GT:DP:GQ:MIN_DP:PL 0/0:54:15:54:0,15,225 +20 10010533 . G . . END=10010533 GT:DP:GQ:MIN_DP:PL 0/0:51:12:51:0,12,180 +20 10010534 . A . . END=10010534 GT:DP:GQ:MIN_DP:PL 0/0:52:6:52:0,6,90 +20 10010535 . A . . END=10010535 GT:DP:GQ:MIN_DP:PL 0/0:53:9:53:0,9,135 +20 10010536 . G GA, 1471.73 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=200600,55 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1509,147,0,1509,147,1509:0,0,20,29 +20 10010537 . A . . END=10010537 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +20 10010538 . A . . END=10010675 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,103,1199 +20 10010676 . A . . END=10010676 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1184 +20 10010677 . T . . END=10010689 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10010690 . C . . END=10010690 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1080 +20 10010691 . A . . END=10010691 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1017 +20 10010692 . C . . END=10010733 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,101,1165 +20 10010734 . A . . END=10010734 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1218 +20 10010735 . T . . END=10010765 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,109,1046 +20 10010766 . T G, 1036.77 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1065,112,0,1065,112,1065:0,0,16,22 +20 10010767 . G . . END=10010820 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,103,1161 +20 10010821 . A . . END=10010821 GT:DP:GQ:MIN_DP:PL 0/0:44:84:44:0,84,1309 +20 10010822 . G . . END=10010822 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,115,1281 +20 10010823 . G T, 0 . DP=40;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;RAW_MQandDP=144000,40 GT:AD:DP:GQ:PL:SB 0/0:40,0,0:40:99:0,120,1251,120,1251,1251:17,23,0,0 +20 10010824 . G . . END=10010831 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,120,1800 +20 10010832 . T C, 1294.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154800,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1323,128,0,1323,128,1323:0,0,19,24 +20 10010833 . A . . END=10011028 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,99,1185 +20 10011029 . C . . END=10011031 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1113 +20 10011032 . A . . END=10011035 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10011036 . T . . END=10011036 GT:DP:GQ:MIN_DP:PL 0/0:39:52:39:0,52,1072 +20 10011037 . A . . END=10011039 GT:DP:GQ:MIN_DP:PL 0/0:38:95:37:0,95,1126 +20 10011040 . T . . END=10011040 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1040 +20 10011041 . T . . END=10011041 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1044 +20 10011042 . A . . END=10011043 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1107 +20 10011044 . T . . END=10011044 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1108 +20 10011045 . A . . END=10011045 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1136 +20 10011046 . G . . END=10011047 GT:DP:GQ:MIN_DP:PL 0/0:36:76:35:0,76,1052 +20 10011048 . G . . END=10011051 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1015 +20 10011052 . T . . END=10011052 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1018 +20 10011053 . T . . END=10011053 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1128 +20 10011054 . A . . END=10011054 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1057 +20 10011055 . G . . END=10011055 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,104,1031 +20 10011056 . C . . END=10011057 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,971 +20 10011058 . A . . END=10011058 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10011059 . G . . END=10011059 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1021 +20 10011060 . T . . END=10011064 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1120 +20 10011065 . C . . END=10011065 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1065 +20 10011066 . A . . END=10011077 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,932 +20 10011078 . A . . END=10011078 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1085 +20 10011079 . A . . END=10011083 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10011084 . T . . END=10011084 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1065 +20 10011085 . T . . END=10011087 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1056 +20 10011088 . C . . END=10011088 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1053 +20 10011089 . A . . END=10011093 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10011094 . C . . END=10011094 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1075 +20 10011095 . A . . END=10011096 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10011097 . C . . END=10011098 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,962 +20 10011099 . T . . END=10011099 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20 10011100 . G . . END=10011100 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1039 +20 10011101 . T . . END=10011101 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10011102 . A . . END=10011102 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1084 +20 10011103 . C . . END=10011111 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1181 +20 10011112 . C . . END=10011112 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10011113 . A . . END=10011113 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1008 +20 10011114 . C . . END=10011114 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10011115 . C . . END=10011140 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1095 +20 10011141 . T . . END=10011145 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1108 +20 10011146 . A . . END=10011149 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10011150 . T . . END=10011150 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1096 +20 10011151 . T . . END=10011152 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10011153 . A . . END=10011156 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10011157 . C . . END=10011157 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1071 +20 10011158 . C . . END=10011165 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10011166 . C . . END=10011171 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10011172 . T . . END=10011177 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1065 +20 10011178 . T . . END=10011178 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10011179 . G . . END=10011179 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1087 +20 10011180 . T . . END=10011227 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,101,1135 +20 10011228 . A . . END=10011228 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1177 +20 10011229 . T . . END=10011280 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,111,1329 +20 10011281 . G A, 0 . BaseQRankSum=-2.303;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=172800,48;ReadPosRankSum=0.763 GT:AD:DP:GQ:PL:SB 0/0:46,2,0:48:99:0,124,1411,138,1416,1430:29,17,1,1 +20 10011282 . A . . END=10011308 GT:DP:GQ:MIN_DP:PL 0/0:51:99:47:0,120,1800 +20 10011309 . T C, 1429.77 . DP=52;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=187200,52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1458,154,0,1458,154,1458:0,0,33,19 +20 10011310 . G . . END=10011335 GT:DP:GQ:MIN_DP:PL 0/0:49:99:44:0,120,1800 +20 10011336 . C . . END=10011336 GT:DP:GQ:MIN_DP:PL 0/0:46:81:46:0,81,1313 +20 10011337 . A . . END=10011413 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,105,1136 +20 10011414 . G . . END=10011414 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1172 +20 10011415 . G . . END=10011445 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,103,1220 +20 10011446 . T . . END=10011446 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1261 +20 10011447 . A . . END=10011472 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,105,1305 +20 10011473 . T . . END=10011475 GT:DP:GQ:MIN_DP:PL 0/0:45:93:43:0,93,1395 +20 10011476 . A . . END=10011482 GT:DP:GQ:MIN_DP:PL 0/0:46:81:44:0,81,1215 +20 10011483 . A . . END=10011486 GT:DP:GQ:MIN_DP:PL 0/0:48:72:48:0,72,1080 +20 10011487 . T . . END=10011492 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,945 +20 10011493 . C . . END=10011493 GT:DP:GQ:MIN_DP:PL 0/0:47:57:47:0,57,855 +20 10011494 . A . . END=10011494 GT:DP:GQ:MIN_DP:PL 0/0:47:54:47:0,54,810 +20 10011495 . T . . END=10011504 GT:DP:GQ:MIN_DP:PL 0/0:45:51:44:0,51,765 +20 10011505 . T . . END=10011505 GT:DP:GQ:MIN_DP:PL 0/0:45:48:45:0,48,720 +20 10011506 . A . . END=10011506 GT:DP:GQ:MIN_DP:PL 0/0:45:39:45:0,39,585 +20 10011507 . C . . END=10011507 GT:DP:GQ:MIN_DP:PL 0/0:44:33:44:0,33,495 +20 10011508 . C . . END=10011508 GT:DP:GQ:MIN_DP:PL 0/0:44:30:44:0,30,450 +20 10011509 . C . . END=10011510 GT:DP:GQ:MIN_DP:PL 0/0:45:24:44:0,24,360 +20 10011511 . T . . END=10011513 GT:DP:GQ:MIN_DP:PL 0/0:46:12:46:0,12,180 +20 10011514 . A . . END=10011516 GT:DP:GQ:MIN_DP:PL 0/0:47:9:46:0,9,135 +20 10011517 . GA G, 904.73 . BaseQRankSum=-1.295;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.329;RAW_MQandDP=159700,44;ReadPosRankSum=-1.459 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:88:942,88,0,945,111,968:1,0,20,17 +20 10011519 . A . . END=10011519 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +20 10011520 . A . . END=10011556 GT:DP:GQ:MIN_DP:PL 0/0:48:99:44:0,100,1332 +20 10011557 . G . . END=10011557 GT:DP:GQ:MIN_DP:PL 0/0:45:94:45:0,94,1206 +20 10011558 . A . . END=10011591 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,100,1260 +20 10011592 . C . . END=10011592 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1145 +20 10011593 . A . . END=10011597 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1227 +20 10011598 . G . . END=10011598 GT:DP:GQ:MIN_DP:PL 0/0:41:67:41:0,67,1108 +20 10011599 . C . . END=10011638 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,105,1215 +20 10011639 . T . . END=10011639 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1265 +20 10011640 . A . . END=10011661 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,101,1198 +20 10011662 . A . . END=10011662 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1108 +20 10011663 . G . . END=10011665 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1144 +20 10011666 . C T, 1111.77 . DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=126000,35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1140,105,0,1140,105,1140:0,0,16,19 +20 10011667 . A . . END=10011678 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1168 +20 10011679 . T . . END=10011679 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1136 +20 10011680 . C . . END=10011680 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1116 +20 10011681 . T . . END=10011687 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10011688 . T . . END=10011690 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10011691 . A . . END=10011938 GT:DP:GQ:MIN_DP:PL 0/0:45:99:37:0,99,1169 +20 10011939 . C T, 1275.77 . DP=42;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=151200,42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1304,126,0,1304,126,1304:0,0,22,20 +20 10011940 . G . . END=10011981 GT:DP:GQ:MIN_DP:PL 0/0:54:99:50:0,99,1399 +20 10011982 . G . . END=10011988 GT:DP:GQ:MIN_DP:PL 0/0:56:90:55:0,90,1350 +20 10011989 . G . . END=10011994 GT:DP:GQ:MIN_DP:PL 0/0:57:81:54:0,81,1215 +20 10011995 . T . . END=10011996 GT:DP:GQ:MIN_DP:PL 0/0:58:75:58:0,75,1125 +20 10011997 . A . . END=10012004 GT:DP:GQ:MIN_DP:PL 0/0:59:60:57:0,60,900 +20 10012005 . C . . END=10012005 GT:DP:GQ:MIN_DP:PL 0/0:59:54:59:0,54,810 +20 10012006 . T . . END=10012006 GT:DP:GQ:MIN_DP:PL 0/0:60:48:60:0,48,720 +20 10012007 . A . . END=10012007 GT:DP:GQ:MIN_DP:PL 0/0:59:42:59:0,42,630 +20 10012008 . G . . END=10012008 GT:DP:GQ:MIN_DP:PL 0/0:60:39:60:0,39,585 +20 10012009 . G . . END=10012010 GT:DP:GQ:MIN_DP:PL 0/0:57:30:55:0,30,450 +20 10012011 . T . . END=10012013 GT:DP:GQ:MIN_DP:PL 0/0:57:27:57:0,27,405 +20 10012014 . A . . END=10012014 GT:DP:GQ:MIN_DP:PL 0/0:58:21:58:0,21,315 +20 10012015 . T . . END=10012015 GT:DP:GQ:MIN_DP:PL 0/0:57:18:57:0,18,270 +20 10012016 . T . . END=10012016 GT:DP:GQ:MIN_DP:PL 0/0:57:6:57:0,6,90 +20 10012017 . A . . END=10012018 GT:DP:GQ:MIN_DP:PL 0/0:57:3:56:0,3,45 +20 10012019 . G . . END=10012020 GT:DP:GQ:MIN_DP:PL 0/0:55:0:53:0,0,0 +20 10012021 . CA C, 1337.73 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=176400,49 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012023 . A . . END=10012023 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,0 +20 10012024 . A . . END=10012361 GT:DP:GQ:MIN_DP:PL 0/0:66:99:47:0,119,1428 +20 10012362 . G A,T, 1617.77 . DP=64;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=223491,64 GT:AD:DP:GQ:PL:SB 1/2:0,39,23,0:62:99:1646,677,562,970,0,901,1646,677,970,1646:0,0,29,33 +20 10012363 . G . . END=10012386 GT:DP:GQ:MIN_DP:PL 0/0:57:99:55:0,120,1800 +20 10012387 . T C, 1458.77 . DP=57;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=204373,57 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1487,165,0,1487,165,1487:0,0,25,31 +20 10012388 . G . . END=10012478 GT:DP:GQ:MIN_DP:PL 0/0:60:99:57:0,120,1800 +20 10012479 . A G, 2355.77 . DP=54;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=178741,54 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,54,0:54:99:0|1:10012479_A_G:2384,168,0,2384,168,2384:0,0,23,31 +20 10012480 . G . . END=10012497 GT:DP:GQ:MIN_DP:PL 0/0:60:99:57:0,120,1800 +20 10012498 . C G, 2515.77 . DP=56;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=181650,56 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,56,0:56:99:0|1:10012479_A_G:2544,172,0,2544,172,2544:0,0,28,28 +20 10012499 . G . . END=10012517 GT:DP:GQ:MIN_DP:PL 0/0:59:99:56:0,120,1800 +20 10012518 . T C, 2268.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=166406,53 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,52,0:52:99:0|1:10012479_A_G:2297,157,0,2297,157,2297:0,0,27,25 +20 10012519 . C . . END=10012527 GT:DP:GQ:MIN_DP:PL 0/0:56:99:54:0,99,1485 +20 10012528 . T . . END=10012529 GT:DP:GQ:MIN_DP:PL 0/0:53:93:52:0,93,1395 +20 10012530 . C . . END=10012531 GT:DP:GQ:MIN_DP:PL 0/0:54:87:53:0,87,1305 +20 10012532 . C . . END=10012536 GT:DP:GQ:MIN_DP:PL 0/0:53:72:51:0,72,1080 +20 10012537 . T . . END=10012542 GT:DP:GQ:MIN_DP:PL 0/0:53:60:51:0,60,900 +20 10012543 . A . . END=10012543 GT:DP:GQ:MIN_DP:PL 0/0:50:57:50:0,57,855 +20 10012544 . C . . END=10012546 GT:DP:GQ:MIN_DP:PL 0/0:51:54:50:0,54,810 +20 10012547 . G . . END=10012547 GT:DP:GQ:MIN_DP:PL 0/0:50:48:50:0,48,720 +20 10012548 . G . . END=10012550 GT:DP:GQ:MIN_DP:PL 0/0:51:45:50:0,45,675 +20 10012551 . T . . END=10012552 GT:DP:GQ:MIN_DP:PL 0/0:51:42:51:0,42,630 +20 10012553 . A . . END=10012553 GT:DP:GQ:MIN_DP:PL 0/0:50:39:50:0,39,585 +20 10012554 . G . . END=10012555 GT:DP:GQ:MIN_DP:PL 0/0:52:36:52:0,36,540 +20 10012556 . T . . END=10012556 GT:DP:GQ:MIN_DP:PL 0/0:53:33:53:0,33,495 +20 10012557 . G . . END=10012558 GT:DP:GQ:MIN_DP:PL 0/0:52:30:51:0,30,450 +20 10012559 . C . . END=10012559 GT:DP:GQ:MIN_DP:PL 0/0:51:15:51:0,15,225 +20 10012560 . T . . END=10012560 GT:DP:GQ:MIN_DP:PL 0/0:51:9:51:0,9,135 +20 10012561 . T . . END=10012565 GT:DP:GQ:MIN_DP:PL 0/0:51:0:50:0,0,0 +20 10012566 . C . . END=10012569 GT:DP:GQ:MIN_DP:PL 0/0:51:3:50:0,3,45 +20 10012570 . G GCA, 2130.73 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140367,49 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,46,0:46:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,22,24 +20 10012571 . G . . END=10012571 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +20 10012572 . GT G, 2130.73 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140367,49 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012574 . G . . END=10012574 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,0 +20 10012575 . C . . END=10012575 GT:DP:GQ:MIN_DP:PL 0/0:51:21:51:0,21,1387 +20 10012576 . T . . END=10012576 GT:DP:GQ:MIN_DP:PL 0/0:52:26:52:0,26,1439 +20 10012577 . C . . END=10012577 GT:DP:GQ:MIN_DP:PL 0/0:53:28:53:0,28,1291 +20 10012578 . G . . END=10012578 GT:DP:GQ:MIN_DP:PL 0/0:53:38:53:0,38,1313 +20 10012579 . G . . END=10012582 GT:DP:GQ:MIN_DP:PL 0/0:52:99:51:0,99,1485 +20 10012583 . C . . END=10012585 GT:DP:GQ:MIN_DP:PL 0/0:52:90:51:0,90,1350 +20 10012586 . C . . END=10012587 GT:DP:GQ:MIN_DP:PL 0/0:52:84:51:0,84,1260 +20 10012588 . G . . END=10012591 GT:DP:GQ:MIN_DP:PL 0/0:51:75:49:0,75,1125 +20 10012592 . G . . END=10012594 GT:DP:GQ:MIN_DP:PL 0/0:50:63:49:0,63,945 +20 10012595 . A . . END=10012597 GT:DP:GQ:MIN_DP:PL 0/0:51:57:51:0,57,855 +20 10012598 . C . . END=10012602 GT:DP:GQ:MIN_DP:PL 0/0:50:51:49:0,51,765 +20 10012603 . G . . END=10012603 GT:DP:GQ:MIN_DP:PL 0/0:50:48:50:0,48,720 +20 10012604 . C . . END=10012605 GT:DP:GQ:MIN_DP:PL 0/0:51:36:50:0,36,540 +20 10012606 . C . . END=10012612 GT:DP:GQ:MIN_DP:PL 0/0:49:33:45:0,33,495 +20 10012613 . C . . END=10012615 GT:DP:GQ:MIN_DP:PL 0/0:49:30:49:0,30,450 +20 10012616 . C . . END=10012618 GT:DP:GQ:MIN_DP:PL 0/0:47:24:46:0,24,360 +20 10012619 . T . . END=10012621 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,180 +20 10012622 . G . . END=10012623 GT:DP:GQ:MIN_DP:PL 0/0:47:3:45:0,3,45 +20 10012624 . T . . END=10012630 GT:DP:GQ:MIN_DP:PL 0/0:48:0:44:0,0,0 +20 10012631 . C CG, 1895.73 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140767,44 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,43,0:43:99:0|1:10012631_C_CG:1933,132,0,1933,132,1933:0,0,20,23 +20 10012632 . G . . END=10012632 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +20 10012633 . C . . END=10012633 GT:DP:GQ:MIN_DP:PL 0/0:45:52:45:0,52,1226 +20 10012634 . C . . END=10012635 GT:DP:GQ:MIN_DP:PL 0/0:46:99:45:0,114,1710 +20 10012636 . G C, 1903.77 . DP=42;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=134867,42 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,41,0:41:99:0|1:10012631_C_CG:1932,132,0,1932,132,1932:0,0,19,22 +20 10012637 . A . . END=10012637 GT:DP:GQ:MIN_DP:PL 0/0:45:53:45:0,53,1153 +20 10012638 . G . . END=10012638 GT:DP:GQ:MIN_DP:PL 0/0:44:51:44:0,51,1203 +20 10012639 . C . . END=10012651 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,100,1128 +20 10012652 . C . . END=10012652 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1320 +20 10012653 . A . . END=10012713 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,110,1146 +20 10012714 . G C, 1312.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=159125,44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1341,132,0,1341,132,1341:0,0,21,23 +20 10012715 . C . . END=10012750 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,112,1275 +20 10012751 . T C, 1269.77 . DP=42;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=151925,42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1298,125,0,1298,125,1298:0,0,21,21 +20 10012752 . C . . END=10012838 GT:DP:GQ:MIN_DP:PL 0/0:51:99:43:0,110,1192 +20 10012839 . A . . END=10012839 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1324 +20 10012840 . A . . END=10012853 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,100,1084 +20 10012854 . C . . END=10012854 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1108 +20 10012855 . A . . END=10012874 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,100,1096 +20 10012875 . T . . END=10012875 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1282 +20 10012876 . T . . END=10012910 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1139 +20 10012911 . T . . END=10012911 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1133 +20 10012912 . A . . END=10012968 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,101,1145 +20 10012969 . G A, 614.77 . BaseQRankSum=-0.305;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=0.498 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:643,0,410,696,485,1181:9,9,11,14 +20 10012970 . A . . END=10012996 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,112,1313 +20 10012997 . C T, 619.77 . BaseQRankSum=0.991;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=0.206 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:648,0,454,705,529,1234:8,11,11,14 +20 10012998 . A . . END=10013026 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,100,1121 +20 10013027 . T . . END=10013027 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1127 +20 10013028 . T . . END=10013041 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,999 +20 10013042 . G . . END=10013042 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1036 +20 10013043 . G . . END=10013048 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10013049 . A . . END=10013051 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10013052 . C . . END=10013052 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,799 +20 10013053 . G . . END=10013059 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,867 +20 10013060 . T . . END=10013064 GT:DP:GQ:MIN_DP:PL 0/0:32:75:30:0,75,1125 +20 10013065 . G . . END=10013065 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10013066 . C . . END=10013067 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10013068 . C . . END=10013071 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10013072 . C . . END=10013072 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,794 +20 10013073 . A . . END=10013075 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10013076 . A . . END=10013076 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,830 +20 10013077 . C . . END=10013079 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10013080 . A . . END=10013080 GT:DP:GQ:MIN_DP:PL 0/0:31:70:31:0,70,869 +20 10013081 . G . . END=10013083 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10013084 . C . . END=10013085 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10013086 . C . . END=10013087 GT:DP:GQ:MIN_DP:PL 0/0:32:82:31:0,82,810 +20 10013088 . G . . END=10013089 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10013090 . T . . END=10013090 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,975 +20 10013091 . C . . END=10013091 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10013092 . T . . END=10013092 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1019 +20 10013093 . A . . END=10013095 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10013096 . A . . END=10013096 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,969 +20 10013097 . A . . END=10013097 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10013098 . T . . END=10013098 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,971 +20 10013099 . C . . END=10013101 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,984 +20 10013102 . C . . END=10013102 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,872 +20 10013103 . A . . END=10013103 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1038 +20 10013104 . G . . END=10013108 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1049 +20 10013109 . T . . END=10013109 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1058 +20 10013110 . G . . END=10013110 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10013111 . G . . END=10013115 GT:DP:GQ:MIN_DP:PL 0/0:35:96:32:0,96,1006 +20 10013116 . G . . END=10013117 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1032 +20 10013118 . C . . END=10013118 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1019 +20 10013119 . C T, 425.77 . BaseQRankSum=1.466;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.131;RAW_MQandDP=117541,33;ReadPosRankSum=-0.185 GT:AD:DP:GQ:PL:SB 0/1:15,18,0:33:99:454,0,354,499,407,906:8,7,6,12 +20 10013120 . A . . END=10013121 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1083 +20 10013122 . A . . END=10013136 GT:DP:GQ:MIN_DP:PL 0/0:35:90:31:0,90,1350 +20 10013137 . C . . END=10013137 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,967 +20 10013138 . A . . END=10013150 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,966 +20 10013151 . C . . END=10013151 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1005 +20 10013152 . A . . END=10013152 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10013153 . G . . END=10013153 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10013154 . C . . END=10013155 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10013156 . G . . END=10013157 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10013158 . G . . END=10013158 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,989 +20 10013159 . G . . END=10013160 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1003 +20 10013161 . A . . END=10013161 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1060 +20 10013162 . A . . END=10013181 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1034 +20 10013182 . A . . END=10013183 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1108 +20 10013184 . A . . END=10013186 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1130 +20 10013187 . G . . END=10013187 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1095 +20 10013188 . T . . END=10013197 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1077 +20 10013198 . G . . END=10013198 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,990 +20 10013199 . T . . END=10013202 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1045 +20 10013203 . T . . END=10013203 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1062 +20 10013204 . T . . END=10013204 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10013205 . C . . END=10013207 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10013208 . T . . END=10013213 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,992 +20 10013214 . C . . END=10013215 GT:DP:GQ:MIN_DP:PL 0/0:33:91:32:0,91,993 +20 10013216 . A . . END=10013216 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10013217 . T . . END=10013218 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10013219 . A . . END=10013219 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10013220 . A . . END=10013220 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1016 +20 10013221 . T . . END=10013221 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10013222 . C . . END=10013223 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10013224 . T . . END=10013225 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10013226 . C . . END=10013231 GT:DP:GQ:MIN_DP:PL 0/0:35:81:33:0,81,1215 +20 10013232 . C . . END=10013232 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,914 +20 10013233 . T . . END=10013234 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10013235 . A . . END=10013243 GT:DP:GQ:MIN_DP:PL 0/0:30:74:26:0,74,810 +20 10013244 . G . . END=10013244 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,821 +20 10013245 . T . . END=10013245 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,762 +20 10013246 . C . . END=10013248 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,769 +20 10013249 . C . . END=10013250 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10013251 . C . . END=10013254 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20 10013255 . T . . END=10013262 GT:DP:GQ:MIN_DP:PL 0/0:30:80:29:0,80,919 +20 10013263 . G . . END=10013263 GT:DP:GQ:MIN_DP:PL 0/0:28:62:28:0,62,836 +20 10013264 . C . . END=10013273 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,900 +20 10013274 . C . . END=10013274 GT:DP:GQ:MIN_DP:PL 0/0:30:67:30:0,67,876 +20 10013275 . A . . END=10013279 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,797 +20 10013280 . G . . END=10013280 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,737 +20 10013281 . A . . END=10013281 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,800 +20 10013282 . A . . END=10013283 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,810 +20 10013284 . G . . END=10013284 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,795 +20 10013285 . T . . END=10013288 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10013289 . C . . END=10013289 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,878 +20 10013290 . A . . END=10013290 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10013291 . G . . END=10013291 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,847 +20 10013292 . C . . END=10013292 GT:DP:GQ:MIN_DP:PL 0/0:29:39:29:0,39,770 +20 10013293 . T . . END=10013293 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10013294 . T . . END=10013296 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10013297 . C . . END=10013297 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20 10013298 . T . . END=10013298 GT:DP:GQ:MIN_DP:PL 0/0:29:56:29:0,56,823 +20 10013299 . C . . END=10013301 GT:DP:GQ:MIN_DP:PL 0/0:31:72:30:0,72,1080 +20 10013302 . G . . END=10013302 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,833 +20 10013303 . A . . END=10013322 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,687 +20 10013323 . C . . END=10013323 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,716 +20 10013324 . C . . END=10013327 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,748 +20 10013328 . A . . END=10013328 GT:DP:GQ:MIN_DP:PL 0/0:27:37:27:0,37,750 +20 10013329 . G . . END=10013329 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,821 +20 10013330 . G . . END=10013338 GT:DP:GQ:MIN_DP:PL 0/0:28:70:27:0,70,776 +20 10013339 . A . . END=10013339 GT:DP:GQ:MIN_DP:PL 0/0:26:67:26:0,67,725 +20 10013340 . C . . END=10013340 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20 10013341 . A . . END=10013341 GT:DP:GQ:MIN_DP:PL 0/0:25:59:25:0,59,684 +20 10013342 . A . . END=10013342 GT:DP:GQ:MIN_DP:PL 0/0:26:50:26:0,50,628 +20 10013343 . C . . END=10013343 GT:DP:GQ:MIN_DP:PL 0/0:26:45:26:0,45,675 +20 10013344 . T . . END=10013348 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,680 +20 10013349 . A . . END=10013349 GT:DP:GQ:MIN_DP:PL 0/0:26:67:26:0,67,714 +20 10013350 . A . . END=10013350 GT:DP:GQ:MIN_DP:PL 0/0:26:45:26:0,45,726 +20 10013351 . G . . END=10013351 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10013352 . C . . END=10013352 GT:DP:GQ:MIN_DP:PL 0/0:23:35:23:0,35,564 +20 10013353 . G . . END=10013353 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,619 +20 10013354 . C . . END=10013355 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,679 +20 10013356 . G . . END=10013361 GT:DP:GQ:MIN_DP:PL 0/0:28:66:22:0,66,589 +20 10013362 . A . . END=10013364 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +20 10013365 . G . . END=10013365 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,808 +20 10013366 . C . . END=10013386 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,733 +20 10013387 . T . . END=10013389 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,804 +20 10013390 . G . . END=10013390 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,737 +20 10013391 . C . . END=10013392 GT:DP:GQ:MIN_DP:PL 0/0:27:80:27:0,80,767 +20 10013393 . G . . END=10013396 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,788 +20 10013397 . C . . END=10013397 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,816 +20 10013398 . A . . END=10013398 GT:DP:GQ:MIN_DP:PL 0/0:27:70:27:0,70,786 +20 10013399 . C . . END=10013407 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10013408 . C . . END=10013409 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10013410 . G . . END=10013413 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10013414 . G . . END=10013415 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10013416 . C . . END=10013421 GT:DP:GQ:MIN_DP:PL 0/0:32:82:30:0,82,901 +20 10013422 . A . . END=10013422 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,895 +20 10013423 . C . . END=10013428 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,833 +20 10013429 . A . . END=10013430 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,855 +20 10013431 . A . . END=10013431 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,829 +20 10013432 . A . . END=10013433 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10013434 . G . . END=10013434 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10013435 . A . . END=10013436 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,935 +20 10013437 . G . . END=10013437 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,885 +20 10013438 . A . . END=10013438 GT:DP:GQ:MIN_DP:PL 0/0:32:39:32:0,39,823 +20 10013439 . A . . END=10013439 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,916 +20 10013440 . A . . END=10013440 GT:DP:GQ:MIN_DP:PL 0/0:32:46:32:0,46,844 +20 10013441 . C . . END=10013441 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10013442 . T . . END=10013442 GT:DP:GQ:MIN_DP:PL 0/0:33:54:33:0,54,925 +20 10013443 . C . . END=10013443 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,907 +20 10013444 . C . . END=10013444 GT:DP:GQ:MIN_DP:PL 0/0:31:27:31:0,27,789 +20 10013445 . G . . END=10013445 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10013446 . A . . END=10013446 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,933 +20 10013447 . A . . END=10013454 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10013455 . G . . END=10013455 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,743 +20 10013456 . A . . END=10013459 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10013460 . T . . END=10013460 GT:DP:GQ:MIN_DP:PL 0/0:29:64:29:0,64,844 +20 10013461 . C . . END=10013480 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,854 +20 10013481 . T . . END=10013481 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,923 +20 10013482 . G . . END=10013482 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,923 +20 10013483 . C . . END=10013483 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,769 +20 10013484 . G . . END=10013484 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,820 +20 10013485 . C . . END=10013486 GT:DP:GQ:MIN_DP:PL 0/0:32:92:31:0,92,932 +20 10013487 . A . . END=10013488 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1017 +20 10013489 . A . . END=10013489 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1014 +20 10013490 . T . . END=10013490 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1090 +20 10013491 . T . . END=10013491 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1049 +20 10013492 . A . . END=10013492 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1111 +20 10013493 . A . . END=10013493 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1100 +20 10013494 . G . . END=10013502 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1080 +20 10013503 . C . . END=10013506 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10013507 . C . . END=10013508 GT:DP:GQ:MIN_DP:PL 0/0:36:87:35:0,87,1305 +20 10013509 . C . . END=10013509 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10013510 . C . . END=10013510 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1023 +20 10013511 . G . . END=10013511 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10013512 . C . . END=10013512 GT:DP:GQ:MIN_DP:PL 0/0:36:56:36:0,56,950 +20 10013513 . G . . END=10013519 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1055 +20 10013520 . C . . END=10013521 GT:DP:GQ:MIN_DP:PL 0/0:34:73:33:0,73,980 +20 10013522 . T . . END=10013696 GT:DP:GQ:MIN_DP:PL 0/0:48:99:35:0,105,1074 +20 10013697 . T . . END=10013697 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1320 +20 10013698 . T . . END=10013730 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1239 +20 10013731 . A . . END=10013731 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1317 +20 10013732 . C . . END=10013754 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,111,1192 +20 10013755 . G . . END=10013755 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1234 +20 10013756 . C . . END=10013805 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,102,1200 +20 10013806 . C . . END=10013806 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1173 +20 10013807 . T . . END=10013813 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1119 +20 10013814 . C . . END=10013814 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1170 +20 10013815 . A . . END=10013815 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20 10013816 . G . . END=10013816 GT:DP:GQ:MIN_DP:PL 0/0:38:71:38:0,71,1106 +20 10013817 . A . . END=10013818 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10013819 . A . . END=10013819 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1204 +20 10013820 . T . . END=10013842 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1181 +20 10013843 . A . . END=10013843 GT:DP:GQ:MIN_DP:PL 0/0:42:68:42:0,68,1214 +20 10013844 . G . . END=10013912 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,107,1199 +20 10013913 . C . . END=10013913 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1293 +20 10013914 . A . . END=10013922 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,108,1294 +20 10013923 . A . . END=10013923 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1270 +20 10013924 . A . . END=10013982 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,99,1199 +20 10013983 . T . . END=10013983 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1128 +20 10013984 . A . . END=10014081 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,106,1114 +20 10014082 . C . . END=10014082 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1287 +20 10014083 . A . . END=10014332 GT:DP:GQ:MIN_DP:PL 0/0:48:99:41:0,102,1280 +20 10014333 . A . . END=10014333 GT:DP:GQ:MIN_DP:PL 0/0:48:96:48:0,96,1341 +20 10014334 . G . . END=10014412 GT:DP:GQ:MIN_DP:PL 0/0:51:99:45:0,109,1391 +20 10014413 . T . . END=10014413 GT:DP:GQ:MIN_DP:PL 0/0:54:93:54:0,93,1564 +20 10014414 . T . . END=10014423 GT:DP:GQ:MIN_DP:PL 0/0:49:99:47:0,117,1395 +20 10014424 . A . . END=10014424 GT:DP:GQ:MIN_DP:PL 0/0:48:95:48:0,95,1430 +20 10014425 . T . . END=10014480 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,101,1303 +20 10014481 . G . . END=10014481 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1257 +20 10014482 . T . . END=10014493 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,105,1331 +20 10014494 . T . . END=10014494 GT:DP:GQ:MIN_DP:PL 0/0:44:78:44:0,78,1281 +20 10014495 . T . . END=10014510 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,120,1800 +20 10014511 . C . . END=10014511 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1204 +20 10014512 . T . . END=10014753 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,104,1206 +20 10014754 . G . . END=10014754 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1290 +20 10014755 . C . . END=10014760 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,117,1755 +20 10014761 . G . . END=10014761 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1185 +20 10014762 . C . . END=10014911 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,99,1175 +20 10014912 . T . . END=10014914 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10014915 . C . . END=10014934 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,102,1102 +20 10014935 . T . . END=10014935 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1114 +20 10014936 . G . . END=10014947 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1108 +20 10014948 . T . . END=10014949 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10014950 . C . . END=10014962 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,1063 +20 10014963 . G . . END=10014970 GT:DP:GQ:MIN_DP:PL 0/0:33:72:31:0,72,1080 +20 10014971 . T . . END=10014971 GT:DP:GQ:MIN_DP:PL 0/0:34:62:34:0,62,958 +20 10014972 . A . . END=10014973 GT:DP:GQ:MIN_DP:PL 0/0:34:72:33:0,72,1080 +20 10014974 . A . . END=10014978 GT:DP:GQ:MIN_DP:PL 0/0:34:63:31:0,63,945 +20 10014979 . G . . END=10014980 GT:DP:GQ:MIN_DP:PL 0/0:35:54:34:0,54,810 +20 10014981 . A . . END=10014982 GT:DP:GQ:MIN_DP:PL 0/0:37:57:37:0,57,855 +20 10014983 . T . . END=10014983 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,810 +20 10014984 . A . . END=10014984 GT:DP:GQ:MIN_DP:PL 0/0:38:51:38:0,51,765 +20 10014985 . A . . END=10014987 GT:DP:GQ:MIN_DP:PL 0/0:38:54:37:0,54,810 +20 10014988 . A . . END=10014988 GT:DP:GQ:MIN_DP:PL 0/0:38:42:38:0,42,630 +20 10014989 . G . . END=10014989 GT:DP:GQ:MIN_DP:PL 0/0:38:39:38:0,39,585 +20 10014990 . C CAT, 697.73 . BaseQRankSum=-0.456;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.800;RAW_MQandDP=130900,36;ReadPosRankSum=0.144 GT:AD:DP:GQ:PL:SB 0/1:12,22,0:34:99:735,0,363,772,429,1201:3,9,10,12 +20 10014991 . A . . END=10014991 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,0 +20 10014992 . T . . END=10014993 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10014994 . T . . END=10014994 GT:DP:GQ:MIN_DP:PL 0/0:35:83:35:0,83,1046 +20 10014995 . A . . END=10014995 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,1032 +20 10014996 . T . . END=10014996 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1084 +20 10014997 . A . . END=10014998 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10014999 . A . . END=10015002 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10015003 . A . . END=10015003 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10015004 . C . . END=10015004 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10015005 . A . . END=10015015 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10015016 . T . . END=10015017 GT:DP:GQ:MIN_DP:PL 0/0:29:78:28:0,78,1170 +20 10015018 . T . . END=10015023 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10015024 . A . . END=10015025 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,896 +20 10015026 . T . . END=10015034 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10015035 . C . . END=10015035 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,811 +20 10015036 . A . . END=10015036 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20 10015037 . A . . END=10015037 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,792 +20 10015038 . A . . END=10015039 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,819 +20 10015040 . C . . END=10015040 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,866 +20 10015041 . A . . END=10015045 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,832 +20 10015046 . T . . END=10015046 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,841 +20 10015047 . T . . END=10015047 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,883 +20 10015048 . T . . END=10015052 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,842 +20 10015053 . A . . END=10015053 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,847 +20 10015054 . T . . END=10015056 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,855 +20 10015057 . T . . END=10015059 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20 10015060 . G . . END=10015067 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +20 10015068 . G . . END=10015068 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10015069 . C . . END=10015069 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,891 +20 10015070 . A . . END=10015071 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10015072 . G . . END=10015072 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,928 +20 10015073 . T . . END=10015074 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10015075 . T . . END=10015075 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,960 +20 10015076 . G . . END=10015076 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10015077 . G . . END=10015078 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10015079 . G . . END=10015084 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20 10015085 . G . . END=10015085 GT:DP:GQ:MIN_DP:PL 0/0:34:76:34:0,76,995 +20 10015086 . A . . END=10015092 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10015093 . T . . END=10015093 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,941 +20 10015094 . G . . END=10015097 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10015098 . T . . END=10015100 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10015101 . T . . END=10015106 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10015107 . T . . END=10015109 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1030 +20 10015110 . A . . END=10015111 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10015112 . G . . END=10015113 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10015114 . C . . END=10015122 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10015123 . A . . END=10015124 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1032 +20 10015125 . G . . END=10015130 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,971 +20 10015131 . T . . END=10015131 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,971 +20 10015132 . C . . END=10015136 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10015137 . T . . END=10015147 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1057 +20 10015148 . T . . END=10015148 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1106 +20 10015149 . T . . END=10015153 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10015154 . A . . END=10015154 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1194 +20 10015155 . T . . END=10015158 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10015159 . T . . END=10015159 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1209 +20 10015160 . A . . END=10015161 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10015162 . T . . END=10015181 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1010 +20 10015182 . C . . END=10015183 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10015184 . A . . END=10015190 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10015191 . G . . END=10015193 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10015194 . A . . END=10015194 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1019 +20 10015195 . A . . END=10015195 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,980 +20 10015196 . G . . END=10015196 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,953 +20 10015197 . A . . END=10015198 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,994 +20 10015199 . A . . END=10015200 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10015201 . T . . END=10015201 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1014 +20 10015202 . T . . END=10015202 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10015203 . T . . END=10015203 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,984 +20 10015204 . C . . END=10015208 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10015209 . A . . END=10015219 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +20 10015220 . G . . END=10015222 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10015223 . T . . END=10015227 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10015228 . G . . END=10015228 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,891 +20 10015229 . G . . END=10015229 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,896 +20 10015230 . C . . END=10015230 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,847 +20 10015231 . A . . END=10015231 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,871 +20 10015232 . G . . END=10015236 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,862 +20 10015237 . G . . END=10015237 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,822 +20 10015238 . A . . END=10015239 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,892 +20 10015240 . T . . END=10015247 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,924 +20 10015248 . C . . END=10015253 GT:DP:GQ:MIN_DP:PL 0/0:35:81:32:0,81,1027 +20 10015254 . C . . END=10015254 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1003 +20 10015255 . T . . END=10015255 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10015256 . T . . END=10015258 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10015259 . T . . END=10015269 GT:DP:GQ:MIN_DP:PL 0/0:32:81:28:0,81,1215 +20 10015270 . A . . END=10015270 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,901 +20 10015271 . T . . END=10015290 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,880 +20 10015291 . T . . END=10015291 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10015292 . A . . END=10015293 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,917 +20 10015294 . T . . END=10015294 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,961 +20 10015295 . T . . END=10015301 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10015302 . C . . END=10015302 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,871 +20 10015303 . T . . END=10015303 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10015304 . A . . END=10015311 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1039 +20 10015312 . A . . END=10015312 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1132 +20 10015313 . T . . END=10015313 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1148 +20 10015314 . T . . END=10015316 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10015317 . A . . END=10015317 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1113 +20 10015318 . T . . END=10015318 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1101 +20 10015319 . A . . END=10015322 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10015323 . T . . END=10015323 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10015324 . A . . END=10015324 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1139 +20 10015325 . C . . END=10015327 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10015328 . C . . END=10015328 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1078 +20 10015329 . A . . END=10015330 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10015331 . T . . END=10015331 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1106 +20 10015332 . T . . END=10015338 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1090 +20 10015339 . T . . END=10015339 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1055 +20 10015340 . G . . END=10015342 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,100,1085 +20 10015343 . A . . END=10015343 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1019 +20 10015344 . T . . END=10015348 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1102 +20 10015349 . A . . END=10015349 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1161 +20 10015350 . G . . END=10015402 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1049 +20 10015403 . G . . END=10015403 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1098 +20 10015404 . A . . END=10015421 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1142 +20 10015422 . A . . END=10015422 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1107 +20 10015423 . A . . END=10015461 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,102,1067 +20 10015462 . A . . END=10015462 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1114 +20 10015463 . C . . END=10015469 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1008 +20 10015470 . C . . END=10015470 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1118 +20 10015471 . A . . END=10015474 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10015475 . A . . END=10015478 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1065 +20 10015479 . C . . END=10015513 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1046 +20 10015514 . A . . END=10015514 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1071 +20 10015515 . G . . END=10015522 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1077 +20 10015523 . G . . END=10015523 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10015524 . G . . END=10015535 GT:DP:GQ:MIN_DP:PL 0/0:35:66:32:0,66,990 +20 10015536 . G . . END=10015546 GT:DP:GQ:MIN_DP:PL 0/0:31:36:30:0,36,540 +20 10015547 . GGGCGGAGGCGGAGGCGGA G, 155.73 . BaseQRankSum=-0.651;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.813;RAW_MQandDP=114200,31;ReadPosRankSum=-0.454 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,6,0:22:99:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015558 . GA G, 543.73 . BaseQRankSum=2.931;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.300;RAW_MQandDP=107000,29;ReadPosRankSum=1.420 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:12,16,0:28:99:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015560 . GGCGGAGGCGGA G, 540.73 . BaseQRankSum=2.911;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.348;RAW_MQandDP=110600,30;ReadPosRankSum=1.698 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:13,16,0:29:99:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015572 . G . . END=10015579 GT:DP:GQ:MIN_DP:PL 0/0:29:69:28:0,69,1035 +20 10015580 . C . . END=10015587 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +20 10015588 . G . . END=10015588 GT:DP:GQ:MIN_DP:PL 0/0:26:47:26:0,47,774 +20 10015589 . A . . END=10015590 GT:DP:GQ:MIN_DP:PL 0/0:25:42:24:0,42,700 +20 10015591 . G . . END=10015595 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,732 +20 10015596 . G . . END=10015599 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,836 +20 10015600 . G . . END=10015615 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,881 +20 10015616 . C . . END=10015616 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,987 +20 10015617 . A . . END=10015630 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,922 +20 10015631 . G . . END=10015637 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,990 +20 10015638 . C . . END=10015641 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10015642 . C . . END=10015652 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,1215 +20 10015653 . T . . END=10015653 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,974 +20 10015654 . G . . END=10015656 GT:DP:GQ:MIN_DP:PL 0/0:33:84:31:0,84,1260 +20 10015657 . T . . END=10015657 GT:DP:GQ:MIN_DP:PL 0/0:32:73:32:0,73,971 +20 10015658 . G . . END=10015659 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10015660 . C . . END=10015668 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,938 +20 10015669 . A . . END=10015669 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1000 +20 10015670 . C . . END=10015673 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10015674 . C . . END=10015678 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10015679 . C T, 212.77 . BaseQRankSum=1.794;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=-0.970;RAW_MQandDP=121400,33;ReadPosRankSum=0.310 GT:AD:DP:GQ:PL:SB 0/1:22,11,0:33:99:241,0,808,310,841,1150:11,11,8,3 +20 10015680 . G . . END=10015687 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1051 +20 10015688 . C . . END=10015688 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1088 +20 10015689 . G . . END=10015691 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1620 +20 10015692 . T . . END=10015692 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1165 +20 10015693 . T . . END=10015703 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,108,1000 +20 10015704 . C . . END=10015704 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1119 +20 10015705 . C . . END=10015709 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1112 +20 10015710 . G . . END=10015710 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,992 +20 10015711 . C . . END=10015711 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +20 10015712 . T . . END=10015712 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1174 +20 10015713 . C . . END=10015728 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1101 +20 10015729 . C A, 571.77 . BaseQRankSum=1.281;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=-1.448 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:600,0,373,638,444,1083:10,3,11,13 +20 10015730 . G . . END=10015760 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,117,1249 +20 10015761 . T C, 1366.77 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1395,117,0,1395,117,1395:0,0,20,19 +20 10015762 . A . . END=10015977 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,107,1212 +20 10015978 . A . . END=10015978 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1135 +20 10015979 . G . . END=10015986 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1118 +20 10015987 . C . . END=10015987 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1138 +20 10015988 . A . . END=10015991 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10015992 . C . . END=10015992 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10015993 . A . . END=10015993 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10015994 . C . . END=10016014 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1030 +20 10016015 . A . . END=10016015 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1088 +20 10016016 . C . . END=10016018 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10016019 . C . . END=10016020 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10016021 . C . . END=10016022 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10016023 . A . . END=10016026 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10016027 . C . . END=10016027 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20 10016028 . C . . END=10016028 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1007 +20 10016029 . T . . END=10016030 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10016031 . C . . END=10016031 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10016032 . A . . END=10016034 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,983 +20 10016035 . C . . END=10016041 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,992 +20 10016042 . T . . END=10016042 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,960 +20 10016043 . C . . END=10016046 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,992 +20 10016047 . A . . END=10016048 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1071 +20 10016049 . A . . END=10016049 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1012 +20 10016050 . T . . END=10016056 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1093 +20 10016057 . G . . END=10016057 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1107 +20 10016058 . G . . END=10016062 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1054 +20 10016063 . T . . END=10016063 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1103 +20 10016064 . A . . END=10016084 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20 10016085 . A . . END=10016085 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1238 +20 10016086 . G . . END=10016206 GT:DP:GQ:MIN_DP:PL 0/0:53:99:38:0,106,1212 +20 10016207 . C G, 659.77 . BaseQRankSum=1.269;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=208800,58;ReadPosRankSum=-0.109 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:688,0,722,778,806,1583:11,19,15,13 +20 10016208 . T . . END=10016403 GT:DP:GQ:MIN_DP:PL 0/0:47:99:39:0,106,1245 +20 10016404 . T . . END=10016404 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1136 +20 10016405 . T . . END=10016424 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1145 +20 10016425 . T . . END=10016431 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10016432 . A . . END=10016442 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1142 +20 10016443 . T . . END=10016443 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1102 +20 10016444 . C . . END=10016458 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1099 +20 10016459 . T . . END=10016459 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1094 +20 10016460 . G . . END=10016460 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1033 +20 10016461 . A . . END=10016468 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10016469 . A . . END=10016469 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1051 +20 10016470 . T . . END=10016481 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1047 +20 10016482 . A . . END=10016482 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1042 +20 10016483 . C . . END=10016491 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10016492 . C . . END=10016492 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1062 +20 10016493 . C . . END=10016498 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10016499 . T . . END=10016499 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1008 +20 10016500 . T . . END=10016501 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10016502 . T . . END=10016503 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,938 +20 10016504 . A . . END=10016506 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10016507 . T . . END=10016528 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,874 +20 10016529 . C . . END=10016529 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10016530 . G . . END=10016530 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,861 +20 10016531 . A . . END=10016532 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10016533 . C . . END=10016535 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1032 +20 10016536 . G . . END=10016537 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,936 +20 10016538 . A . . END=10016538 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,939 +20 10016539 . C . . END=10016540 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,960 +20 10016541 . T . . END=10016541 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1051 +20 10016542 . C . . END=10016545 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10016546 . T . . END=10016546 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1015 +20 10016547 . C . . END=10016547 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,52,954 +20 10016548 . A . . END=10016552 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10016553 . A . . END=10016557 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10016558 . G . . END=10016559 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1089 +20 10016560 . T . . END=10016577 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,100,1067 +20 10016578 . T . . END=10016579 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10016580 . G . . END=10016600 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1071 +20 10016601 . T . . END=10016601 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1090 +20 10016602 . G . . END=10016607 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10016608 . G . . END=10016608 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1140 +20 10016609 . G . . END=10016624 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1120 +20 10016625 . A . . END=10016625 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1120 +20 10016626 . G . . END=10016686 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,99,1133 +20 10016687 . C . . END=10016687 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1180 +20 10016688 . C . . END=10016703 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,99,1485 +20 10016704 . T . . END=10016711 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1123 +20 10016712 . C . . END=10016725 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,996 +20 10016726 . A . . END=10016726 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1065 +20 10016727 . G . . END=10016757 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,101,1110 +20 10016758 . A . . END=10016758 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1161 +20 10016759 . G . . END=10016785 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1123 +20 10016786 . C . . END=10016789 GT:DP:GQ:MIN_DP:PL 0/0:39:90:37:0,90,1350 +20 10016790 . G . . END=10016797 GT:DP:GQ:MIN_DP:PL 0/0:35:87:30:0,87,1305 +20 10016798 . G . . END=10016798 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10016799 . G . . END=10016800 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,900 +20 10016801 . C . . END=10016802 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,919 +20 10016803 . T . . END=10016803 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,911 +20 10016804 . T . . END=10016808 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,990 +20 10016809 . G . . END=10016809 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,993 +20 10016810 . G . . END=10016823 GT:DP:GQ:MIN_DP:PL 0/0:34:92:31:0,92,903 +20 10016824 . C . . END=10016827 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,988 +20 10016828 . G . . END=10016828 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,952 +20 10016829 . G . . END=10016840 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,988 +20 10016841 . T . . END=10016841 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1126 +20 10016842 . G . . END=10016862 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1118 +20 10016863 . G . . END=10016869 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10016870 . C . . END=10016871 GT:DP:GQ:MIN_DP:PL 0/0:35:87:34:0,87,1305 +20 10016872 . A . . END=10016872 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1017 +20 10016873 . A . . END=10016873 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10016874 . T . . END=10016876 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1067 +20 10016877 . A . . END=10016877 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10016878 . T . . END=10016878 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,970 +20 10016879 . T . . END=10016890 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10016891 . A . . END=10016898 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1040 +20 10016899 . T . . END=10016901 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1089 +20 10016902 . C . . END=10016902 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1074 +20 10016903 . A . . END=10017228 GT:DP:GQ:MIN_DP:PL 0/0:56:99:35:0,99,1145 +20 10017229 . C . . END=10017232 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20 10017233 . T . . END=10017239 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10017240 . A . . END=10017246 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10017247 . T . . END=10017247 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,996 +20 10017248 . G . . END=10017261 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10017262 . G . . END=10017265 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10017266 . G . . END=10017266 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,890 +20 10017267 . A . . END=10017267 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10017268 . T . . END=10017273 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,910 +20 10017274 . G . . END=10017274 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10017275 . A . . END=10017275 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,935 +20 10017276 . G . . END=10017276 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10017277 . G . . END=10017278 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10017279 . C . . END=10017284 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10017285 . T . . END=10017285 GT:DP:GQ:MIN_DP:PL 0/0:31:50:31:0,50,821 +20 10017286 . T . . END=10017286 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,950 +20 10017287 . C . . END=10017288 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10017289 . A . . END=10017292 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10017293 . C . . END=10017293 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10017294 . A . . END=10017295 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10017296 . C . . END=10017296 GT:DP:GQ:MIN_DP:PL 0/0:32:56:32:0,56,894 +20 10017297 . C . . END=10017297 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10017298 . T . . END=10017300 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10017301 . C . . END=10017301 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,910 +20 10017302 . C . . END=10017303 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10017304 . A . . END=10017306 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10017307 . T . . END=10017307 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,987 +20 10017308 . G . . END=10017309 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10017310 . T . . END=10017310 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,978 +20 10017311 . G . . END=10017322 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10017323 . T . . END=10017323 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1014 +20 10017324 . T . . END=10017327 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10017328 . A . . END=10017330 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10017331 . A . . END=10017331 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10017332 . A . . END=10017334 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1001 +20 10017335 . C . . END=10017338 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10017339 . A . . END=10017340 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +20 10017341 . T . . END=10017345 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10017346 . C . . END=10017346 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1030 +20 10017347 . A . . END=10017358 GT:DP:GQ:MIN_DP:PL 0/0:34:92:31:0,92,959 +20 10017359 . G . . END=10017361 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,982 +20 10017362 . C . . END=10017362 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,945 +20 10017363 . A . . END=10017363 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,895 +20 10017364 . C . . END=10017367 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,980 +20 10017368 . T . . END=10017372 GT:DP:GQ:MIN_DP:PL 0/0:35:92:33:0,92,1019 +20 10017373 . C . . END=10017373 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,904 +20 10017374 . C . . END=10017376 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10017377 . C . . END=10017377 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,945 +20 10017378 . T . . END=10017380 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,940 +20 10017381 . T . . END=10017381 GT:DP:GQ:MIN_DP:PL 0/0:34:66:34:0,66,925 +20 10017382 . C . . END=10017388 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,922 +20 10017389 . C . . END=10017389 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,916 +20 10017390 . T . . END=10017393 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10017394 . G . . END=10017394 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1077 +20 10017395 . C . . END=10017395 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10017396 . A . . END=10017396 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1104 +20 10017397 . G . . END=10017426 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1127 +20 10017427 . T . . END=10017427 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,944 +20 10017428 . T . . END=10017454 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1096 +20 10017455 . A . . END=10017455 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1024 +20 10017456 . C . . END=10017457 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1048 +20 10017458 . C . . END=10017458 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1015 +20 10017459 . C . . END=10017473 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1069 +20 10017474 . A . . END=10017474 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,946 +20 10017475 . G . . END=10017478 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10017479 . G . . END=10017488 GT:DP:GQ:MIN_DP:PL 0/0:35:84:30:0,84,1260 +20 10017489 . G . . END=10017497 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10017498 . G . . END=10017498 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10017499 . G . . END=10017504 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20 10017505 . G . . END=10017528 GT:DP:GQ:MIN_DP:PL 0/0:24:63:22:0,63,649 +20 10017529 . G . . END=10017529 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +20 10017530 . T . . END=10017530 GT:DP:GQ:MIN_DP:PL 0/0:22:45:22:0,45,597 +20 10017531 . G . . END=10017531 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +20 10017532 . T . . END=10017535 GT:DP:GQ:MIN_DP:PL 0/0:22:54:21:0,54,810 +20 10017536 . A . . END=10017536 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +20 10017537 . G . . END=10017537 GT:DP:GQ:MIN_DP:PL 0/0:22:51:22:0,51,765 +20 10017538 . G . . END=10017538 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 +20 10017539 . A . . END=10017539 GT:DP:GQ:MIN_DP:PL 0/0:21:52:21:0,52,608 +20 10017540 . C . . END=10017542 GT:DP:GQ:MIN_DP:PL 0/0:21:51:20:0,51,765 +20 10017543 . A . . END=10017543 GT:DP:GQ:MIN_DP:PL 0/0:20:49:20:0,49,563 +20 10017544 . A . . END=10017544 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +20 10017545 . A . . END=10017545 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,651 +20 10017546 . A . . END=10017549 GT:DP:GQ:MIN_DP:PL 0/0:20:57:19:0,57,598 +20 10017550 . T . . END=10017550 GT:DP:GQ:MIN_DP:PL 0/0:19:33:19:0,33,419 +20 10017551 . C . . END=10017551 GT:DP:GQ:MIN_DP:PL 0/0:19:56:19:0,56,530 +20 10017552 . T . . END=10017553 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,591 +20 10017554 . G . . END=10017560 GT:DP:GQ:MIN_DP:PL 0/0:21:57:20:0,57,855 +20 10017561 . T . . END=10017561 GT:DP:GQ:MIN_DP:PL 0/0:22:55:22:0,55,677 +20 10017562 . A . . END=10017563 GT:DP:GQ:MIN_DP:PL 0/0:22:57:21:0,57,855 +20 10017564 . C . . END=10017564 GT:DP:GQ:MIN_DP:PL 0/0:19:41:19:0,41,557 +20 10017565 . C . . END=10017566 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +20 10017567 . T . . END=10017567 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +20 10017568 . G . . END=10017572 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,637 +20 10017573 . C . . END=10017576 GT:DP:GQ:MIN_DP:PL 0/0:21:57:19:0,57,610 +20 10017577 . A . . END=10017577 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,592 +20 10017578 . C . . END=10017578 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +20 10017579 . A . . END=10017579 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +20 10017580 . T . . END=10017580 GT:DP:GQ:MIN_DP:PL 0/0:20:36:20:0,36,531 +20 10017581 . A . . END=10017581 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,621 +20 10017582 . G . . END=10017582 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +20 10017583 . G . . END=10017585 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +20 10017586 . T . . END=10017587 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +20 10017588 . T . . END=10017588 GT:DP:GQ:MIN_DP:PL 0/0:20:47:20:0,47,617 +20 10017589 . T . . END=10017589 GT:DP:GQ:MIN_DP:PL 0/0:19:45:19:0,45,675 +20 10017590 . G . . END=10017590 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 +20 10017591 . A . . END=10017591 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +20 10017592 . A . . END=10017592 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,566 +20 10017593 . A . . END=10017593 GT:DP:GQ:MIN_DP:PL 0/0:20:39:20:0,39,587 +20 10017594 . T . . END=10017594 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +20 10017595 . G . . END=10017600 GT:DP:GQ:MIN_DP:PL 0/0:22:60:20:0,60,620 +20 10017601 . T . . END=10017601 GT:DP:GQ:MIN_DP:PL 0/0:20:49:20:0,49,537 +20 10017602 . C . . END=10017604 GT:DP:GQ:MIN_DP:PL 0/0:21:63:21:0,63,632 +20 10017605 . C . . END=10017605 GT:DP:GQ:MIN_DP:PL 0/0:23:58:23:0,58,691 +20 10017606 . A . . END=10017607 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,792 +20 10017608 . A . . END=10017609 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10017610 . G . . END=10017610 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,841 +20 10017611 . A . . END=10017612 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,873 +20 10017613 . C . . END=10017613 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,819 +20 10017614 . C . . END=10017614 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,775 +20 10017615 . T . . END=10017615 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,852 +20 10017616 . G . . END=10017616 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,889 +20 10017617 . A . . END=10017618 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,951 +20 10017619 . C . . END=10017619 GT:DP:GQ:MIN_DP:PL 0/0:30:89:30:0,89,910 +20 10017620 . A . . END=10017631 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,967 +20 10017632 . T . . END=10017632 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,994 +20 10017633 . G . . END=10017634 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10017635 . T . . END=10017635 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1013 +20 10017636 . G . . END=10017668 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,102,1059 +20 10017669 . T . . END=10017669 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1279 +20 10017670 . G . . END=10017752 GT:DP:GQ:MIN_DP:PL 0/0:45:99:37:0,105,1250 +20 10017753 . T . . END=10017753 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1163 +20 10017754 . G . . END=10017755 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10017756 . T . . END=10017762 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10017763 . T . . END=10017775 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1148 +20 10017776 . A G, 412.77 . BaseQRankSum=-2.641;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=0.038 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:441,0,519,498,573,1072:11,8,10,8 +20 10017777 . G . . END=10017954 GT:DP:GQ:MIN_DP:PL 0/0:47:99:38:0,100,1204 +20 10017955 . G . . END=10017955 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1211 +20 10017956 . A . . END=10017968 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,111,1665 +20 10017969 . C . . END=10017969 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1207 +20 10017970 . A . . END=10017971 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,107,1218 +20 10017972 . C . . END=10017972 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1221 +20 10017973 . C . . END=10017988 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1177 +20 10017989 . G . . END=10017989 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1042 +20 10017990 . C . . END=10017991 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1173 +20 10017992 . C . . END=10017995 GT:DP:GQ:MIN_DP:PL 0/0:36:93:31:0,93,972 +20 10017996 . C . . END=10017996 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,971 +20 10017997 . C . . END=10017998 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10017999 . C . . END=10017999 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1002 +20 10018000 . A . . END=10018009 GT:DP:GQ:MIN_DP:PL 0/0:33:83:32:0,83,998 +20 10018010 . G . . END=10018010 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10018011 . C . . END=10018011 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,954 +20 10018012 . T . . END=10018012 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1023 +20 10018013 . T . . END=10018013 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,963 +20 10018014 . A . . END=10018014 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10018015 . A . . END=10018015 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,935 +20 10018016 . C . . END=10018018 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10018019 . C . . END=10018037 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1053 +20 10018038 . C . . END=10018049 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1085 +20 10018050 . G . . END=10018070 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1118 +20 10018071 . T . . END=10018071 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1204 +20 10018072 . T . . END=10018157 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,100,1365 +20 10018158 . G C, 1631.77 . DP=53;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=190800,53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1660,159,0,1660,159,1660:0,0,27,26 +20 10018159 . C . . END=10018214 GT:DP:GQ:MIN_DP:PL 0/0:52:99:48:0,105,1381 +20 10018215 . T . . END=10018215 GT:DP:GQ:MIN_DP:PL 0/0:51:80:51:0,80,1405 +20 10018216 . C . . END=10018301 GT:DP:GQ:MIN_DP:PL 0/0:48:99:44:0,103,1413 +20 10018302 . A . . END=10018302 GT:DP:GQ:MIN_DP:PL 0/0:45:92:45:0,92,1341 +20 10018303 . T . . END=10018303 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +20 10018304 . T . . END=10018304 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1346 +20 10018305 . T . . END=10018321 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1220 +20 10018322 . A . . END=10018322 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1309 +20 10018323 . A . . END=10018455 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,107,1255 +20 10018456 . G . . END=10018456 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1265 +20 10018457 . T . . END=10018504 GT:DP:GQ:MIN_DP:PL 0/0:48:99:43:0,119,1324 +20 10018505 . G . . END=10018505 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1276 +20 10018506 . T . . END=10018554 GT:DP:GQ:MIN_DP:PL 0/0:53:99:44:0,120,1800 +20 10018555 . G A, 461.77 . BaseQRankSum=0.301;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=205200,57;ReadPosRankSum=-0.247 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:490,0,809,589,874,1463:19,14,11,11 +20 10018556 . C . . END=10018699 GT:DP:GQ:MIN_DP:PL 0/0:55:99:46:0,115,1531 +20 10018700 . T C, 531.77 . BaseQRankSum=-2.659;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=169200,47;ReadPosRankSum=0.244 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:560,0,626,629,695,1325:7,16,12,11 +20 10018701 . A . . END=10018873 GT:DP:GQ:MIN_DP:PL 0/0:54:99:46:0,115,1455 +20 10018874 . C . . END=10018874 GT:DP:GQ:MIN_DP:PL 0/0:49:74:49:0,74,1298 +20 10018875 . T . . END=10018923 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,101,1286 +20 10018924 . A . . END=10018924 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1327 +20 10018925 . A . . END=10018931 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,111,1318 +20 10018932 . T . . END=10018933 GT:DP:GQ:MIN_DP:PL 0/0:42:71:41:0,71,1207 +20 10018934 . A . . END=10018934 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,110,1324 +20 10018935 . A . . END=10018936 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1230 +20 10018937 . G . . END=10018937 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +20 10018938 . A . . END=10018938 GT:DP:GQ:MIN_DP:PL 0/0:43:82:43:0,82,1207 +20 10018939 . G . . END=10019050 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,101,1233 +20 10019051 . T . . END=10019051 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1364 +20 10019052 . G . . END=10019092 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,117,1347 +20 10019093 . A G, 1303.77 . BaseQRankSum=1.712;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=176400,49;ReadPosRankSum=-0.954 GT:AD:DP:GQ:PL:SB 1/1:2,46,0:48:93:1332,93,0,1338,137,1381:1,1,25,21 +20 10019094 . C . . END=10019229 GT:DP:GQ:MIN_DP:PL 0/0:47:99:39:0,102,1224 +20 10019230 . A . . END=10019235 GT:DP:GQ:MIN_DP:PL 0/0:39:93:36:0,93,1395 +20 10019236 . C . . END=10019236 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1062 +20 10019237 . A . . END=10019237 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1106 +20 10019238 . A . . END=10019238 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10019239 . T . . END=10019239 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10019240 . G . . END=10019241 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10019242 . A . . END=10019242 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1097 +20 10019243 . A . . END=10019244 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10019245 . T . . END=10019245 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1125 +20 10019246 . A . . END=10019255 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1147 +20 10019256 . G . . END=10019256 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1156 +20 10019257 . C . . END=10019426 GT:DP:GQ:MIN_DP:PL 0/0:47:99:39:0,104,1201 +20 10019427 . A . . END=10019427 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1127 +20 10019428 . C . . END=10019439 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1242 +20 10019440 . A . . END=10019440 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1196 +20 10019441 . A . . END=10019448 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10019449 . T . . END=10019449 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1107 +20 10019450 . C . . END=10019452 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10019453 . C . . END=10019462 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1395 +20 10019463 . G . . END=10019465 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1177 +20 10019466 . A . . END=10019466 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1110 +20 10019467 . A . . END=10019469 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10019470 . A . . END=10019470 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1082 +20 10019471 . G . . END=10019486 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,104,1074 +20 10019487 . G . . END=10019487 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1137 +20 10019488 . G . . END=10019490 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10019491 . A . . END=10019491 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1197 +20 10019492 . T . . END=10019543 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,101,1111 +20 10019544 . C . . END=10019544 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1098 +20 10019545 . T . . END=10019549 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10019550 . A . . END=10019550 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1111 +20 10019551 . A . . END=10019557 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10019558 . G . . END=10019558 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1114 +20 10019559 . A . . END=10019614 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1094 +20 10019615 . A . . END=10019615 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1053 +20 10019616 . A . . END=10019758 GT:DP:GQ:MIN_DP:PL 0/0:42:99:36:0,99,1100 +20 10019759 . T . . END=10019761 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10019762 . A . . END=10019768 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10019769 . T . . END=10019774 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10019775 . A . . END=10019776 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10019777 . A . . END=10019777 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1031 +20 10019778 . A . . END=10019778 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10019779 . A . . END=10019779 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,957 +20 10019780 . C . . END=10019780 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10019781 . T . . END=10019781 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,976 +20 10019782 . C . . END=10019782 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10019783 . C . . END=10019784 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10019785 . A . . END=10019786 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10019787 . T . . END=10019787 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10019788 . T . . END=10019788 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10019789 . T . . END=10019789 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10019790 . C . . END=10019790 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10019791 . T . . END=10019800 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10019801 . T . . END=10019808 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10019809 . T . . END=10019812 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,1215 +20 10019813 . T . . END=10019815 GT:DP:GQ:MIN_DP:PL 0/0:32:78:31:0,78,1170 +20 10019816 . A . . END=10019821 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10019822 . A . . END=10019824 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,903 +20 10019825 . T . . END=10019825 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10019826 . T . . END=10019830 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10019831 . C . . END=10019832 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10019833 . T . . END=10019833 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,958 +20 10019834 . T . . END=10019840 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10019841 . G . . END=10019854 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1068 +20 10019855 . G . . END=10019855 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1139 +20 10019856 . A . . END=10019893 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,110,1235 +20 10019894 . C . . END=10019894 GT:DP:GQ:MIN_DP:PL 0/0:43:86:43:0,86,1269 +20 10019895 . A . . END=10019926 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,115,1304 +20 10019927 . G . . END=10019927 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1251 +20 10019928 . C . . END=10019967 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1215 +20 10019968 . C . . END=10019973 GT:DP:GQ:MIN_DP:PL 0/0:39:90:35:0,90,1350 +20 10019974 . A . . END=10019976 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10019977 . A . . END=10019981 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10019982 . A . . END=10019998 GT:DP:GQ:MIN_DP:PL 0/0:32:81:28:0,81,1215 +20 10019999 . C . . END=10020002 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20 10020003 . A . . END=10020006 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10020007 . A . . END=10020010 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,892 +20 10020011 . T . . END=10020017 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10020018 . T . . END=10020021 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,872 +20 10020022 . A . . END=10020025 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10020026 . G . . END=10020030 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10020031 . C . . END=10020041 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1045 +20 10020042 . G . . END=10020056 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10020057 . T . . END=10020062 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10020063 . T . . END=10020063 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1075 +20 10020064 . C . . END=10020228 GT:DP:GQ:MIN_DP:PL 0/0:46:99:35:0,99,1061 +20 10020229 . G A, 339.77 . BaseQRankSum=4.552;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=162000,45;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL:SB 0/1:30,15,0:45:99:368,0,693,456,738,1194:15,15,9,6 +20 10020230 . T . . END=10020324 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,99,1202 +20 10020325 . C . . END=10020325 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1125 +20 10020326 . A . . END=10020337 GT:DP:GQ:MIN_DP:PL 0/0:36:90:32:0,90,1350 +20 10020338 . G . . END=10020338 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,941 +20 10020339 . T . . END=10020339 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10020340 . G . . END=10020340 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,923 +20 10020341 . T . . END=10020343 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10020344 . C . . END=10020346 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10020347 . G . . END=10020347 GT:DP:GQ:MIN_DP:PL 0/0:35:56:35:0,56,973 +20 10020348 . G . . END=10020349 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10020350 . C . . END=10020350 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1034 +20 10020351 . C . . END=10020412 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1067 +20 10020413 . T . . END=10020413 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1205 +20 10020414 . A . . END=10020428 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1158 +20 10020429 . G . . END=10020429 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,990 +20 10020430 . C . . END=10020430 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10020431 . A . . END=10020433 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10020434 . T . . END=10020434 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10020435 . A . . END=10020441 GT:DP:GQ:MIN_DP:PL 0/0:37:90:34:0,90,1350 +20 10020442 . A . . END=10020442 GT:DP:GQ:MIN_DP:PL 0/0:34:66:34:0,66,978 +20 10020443 . C . . END=10020450 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10020451 . G . . END=10020454 GT:DP:GQ:MIN_DP:PL 0/0:31:87:29:0,87,953 +20 10020455 . A . . END=10020464 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,946 +20 10020465 . A . . END=10020465 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,945 +20 10020466 . C . . END=10020466 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10020467 . A . . END=10020469 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10020470 . T . . END=10020471 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10020472 . C . . END=10020472 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1051 +20 10020473 . C . . END=10020475 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10020476 . A . . END=10020487 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1086 +20 10020488 . A . . END=10020491 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10020492 . A . . END=10020492 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1087 +20 10020493 . A . . END=10020494 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1013 +20 10020495 . A . . END=10020495 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,997 +20 10020496 . A . . END=10020496 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10020497 . T . . END=10020502 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1007 +20 10020503 . T . . END=10020503 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1010 +20 10020504 . T . . END=10020505 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1039 +20 10020506 . A . . END=10020521 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10020522 . C . . END=10020522 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1022 +20 10020523 . T . . END=10020524 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10020525 . G . . END=10020526 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10020527 . G . . END=10020527 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1060 +20 10020528 . T . . END=10020532 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1072 +20 10020533 . T . . END=10020533 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1034 +20 10020534 . G . . END=10020534 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10020535 . G . . END=10020535 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1017 +20 10020536 . A . . END=10020536 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10020537 . C . . END=10020540 GT:DP:GQ:MIN_DP:PL 0/0:34:96:32:0,96,979 +20 10020541 . C . . END=10020541 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,897 +20 10020542 . C . . END=10020546 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1012 +20 10020547 . G . . END=10020548 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,972 +20 10020549 . A . . END=10020559 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1038 +20 10020560 . T . . END=10020560 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,931 +20 10020561 . A . . END=10020566 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,927 +20 10020567 . A . . END=10020567 GT:DP:GQ:MIN_DP:PL 0/0:32:54:32:0,54,883 +20 10020568 . C . . END=10020569 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,832 +20 10020570 . T . . END=10020570 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,985 +20 10020571 . T . . END=10020576 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,943 +20 10020577 . T . . END=10020577 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,908 +20 10020578 . A . . END=10020578 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10020579 . C . . END=10020579 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,884 +20 10020580 . T . . END=10020581 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10020582 . A . . END=10020582 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,983 +20 10020583 . G . . END=10020583 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,911 +20 10020584 . T . . END=10020584 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,961 +20 10020585 . T . . END=10020585 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10020586 . T . . END=10020587 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,937 +20 10020588 . A . . END=10020589 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10020590 . A . . END=10020590 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1003 +20 10020591 . C . . END=10020591 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,977 +20 10020592 . A . . END=10020592 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10020593 . G . . END=10020593 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,966 +20 10020594 . A . . END=10020595 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10020596 . A . . END=10020596 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10020597 . C . . END=10020597 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,952 +20 10020598 . A . . END=10020601 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10020602 . C . . END=10020602 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,915 +20 10020603 . A . . END=10020603 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10020604 . C . . END=10020604 GT:DP:GQ:MIN_DP:PL 0/0:35:61:35:0,61,923 +20 10020605 . A . . END=10020614 GT:DP:GQ:MIN_DP:PL 0/0:33:80:32:0,80,908 +20 10020615 . G . . END=10020618 GT:DP:GQ:MIN_DP:PL 0/0:31:71:30:0,71,866 +20 10020619 . T . . END=10020619 GT:DP:GQ:MIN_DP:PL 0/0:28:39:28:0,39,725 +20 10020620 . T . . END=10020634 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,803 +20 10020635 . T . . END=10020638 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,841 +20 10020639 . A . . END=10020639 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,842 +20 10020640 . A . . END=10020640 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20 10020641 . A . . END=10020652 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,846 +20 10020653 . T . . END=10020667 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,837 +20 10020668 . G . . END=10020669 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,762 +20 10020670 . A . . END=10020674 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +20 10020675 . T . . END=10020675 GT:DP:GQ:MIN_DP:PL 0/0:28:58:28:0,58,793 +20 10020676 . G . . END=10020676 GT:DP:GQ:MIN_DP:PL 0/0:26:77:26:0,77,761 +20 10020677 . G . . END=10020677 GT:DP:GQ:MIN_DP:PL 0/0:26:46:26:0,46,672 +20 10020678 . A . . END=10020681 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20 10020682 . A . . END=10020696 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10020697 . C . . END=10020697 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,954 +20 10020698 . T . . END=10020699 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10020700 . G . . END=10020700 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,907 +20 10020701 . C . . END=10020702 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,917 +20 10020703 . G . . END=10020703 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,811 +20 10020704 . C . . END=10020707 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10020708 . T . . END=10020708 GT:DP:GQ:MIN_DP:PL 0/0:28:53:28:0,53,852 +20 10020709 . G . . END=10020709 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,857 +20 10020710 . C . . END=10020714 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,903 +20 10020715 . G . . END=10020717 GT:DP:GQ:MIN_DP:PL 0/0:29:72:26:0,72,841 +20 10020718 . A . . END=10020718 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,917 +20 10020719 . T . . END=10020719 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,931 +20 10020720 . A . . END=10020721 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,982 +20 10020722 . G . . END=10020723 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,935 +20 10020724 . C . . END=10020724 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,981 +20 10020725 . T . . END=10020725 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10020726 . A . . END=10020728 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10020729 . G . . END=10020729 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,932 +20 10020730 . G . . END=10020742 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10020743 . T . . END=10020744 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10020745 . G . . END=10020745 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,914 +20 10020746 . G . . END=10020747 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10020748 . A . . END=10020749 GT:DP:GQ:MIN_DP:PL 0/0:33:83:32:0,83,961 +20 10020750 . A . . END=10020751 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10020752 . C . . END=10020753 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,991 +20 10020754 . G . . END=10020754 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,985 +20 10020755 . A . . END=10020757 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10020758 . C . . END=10020758 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10020759 . T . . END=10020759 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1107 +20 10020760 . A . . END=10020760 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10020761 . T . . END=10020761 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1104 +20 10020762 . A . . END=10020789 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,105,1134 +20 10020790 . C . . END=10020790 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1142 +20 10020791 . A . . END=10020815 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1147 +20 10020816 . C . . END=10020816 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1176 +20 10020817 . C . . END=10020818 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10020819 . G . . END=10020819 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1150 +20 10020820 . C . . END=10020835 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,102,1075 +20 10020836 . T . . END=10020836 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1082 +20 10020837 . A . . END=10020845 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1098 +20 10020846 . T . . END=10020846 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1051 +20 10020847 . A . . END=10020851 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1119 +20 10020852 . C . . END=10020852 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1067 +20 10020853 . C . . END=10020854 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1161 +20 10020855 . T . . END=10020855 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1091 +20 10020856 . T . . END=10020856 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1153 +20 10020857 . G . . END=10020857 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1119 +20 10020858 . T . . END=10020887 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,999 +20 10020888 . C . . END=10020888 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1100 +20 10020889 . A . . END=10020900 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1123 +20 10020901 . G . . END=10020901 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1115 +20 10020902 . C . . END=10020905 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10020906 . C . . END=10020906 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1131 +20 10020907 . A . . END=10020917 GT:DP:GQ:MIN_DP:PL 0/0:37:93:33:0,93,1395 +20 10020918 . T . . END=10020918 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,999 +20 10020919 . T . . END=10020919 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10020920 . T . . END=10020931 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +20 10020932 . G . . END=10020935 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10020936 . A . . END=10020936 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,939 +20 10020937 . A . . END=10020940 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10020941 . C . . END=10021017 GT:DP:GQ:MIN_DP:PL 0/0:42:99:34:0,99,1113 +20 10021018 . G . . END=10021018 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1078 +20 10021019 . T . . END=10021024 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1530 +20 10021025 . A . . END=10021025 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1222 +20 10021026 . A . . END=10021028 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,101,1174 +20 10021029 . A . . END=10021030 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1108 +20 10021031 . A . . END=10021031 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1087 +20 10021032 . A . . END=10021033 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10021034 . C . . END=10021034 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1055 +20 10021035 . A . . END=10021036 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1078 +20 10021037 . A . . END=10021037 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1095 +20 10021038 . C . . END=10021040 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,100,1058 +20 10021041 . T . . END=10021041 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1047 +20 10021042 . T . . END=10021043 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10021044 . A . . END=10021044 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1019 +20 10021045 . A . . END=10021045 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1027 +20 10021046 . T . . END=10021047 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10021048 . G . . END=10021048 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1018 +20 10021049 . C . . END=10021051 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10021052 . A . . END=10021052 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10021053 . G . . END=10021053 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1059 +20 10021054 . T . . END=10021054 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1053 +20 10021055 . G . . END=10021056 GT:DP:GQ:MIN_DP:PL 0/0:35:86:34:0,86,1002 +20 10021057 . G . . END=10021057 GT:DP:GQ:MIN_DP:PL 0/0:36:70:36:0,70,1007 +20 10021058 . T . . END=10021078 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1234 +20 10021079 . C . . END=10021079 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1138 +20 10021080 . C . . END=10021082 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,100,1121 +20 10021083 . G . . END=10021085 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1080 +20 10021086 . C . . END=10021088 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +20 10021089 . A . . END=10021089 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20 10021090 . G . . END=10021090 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1047 +20 10021091 . C . . END=10021091 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10021092 . G . . END=10021092 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,946 +20 10021093 . G . . END=10021093 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10021094 . C . . END=10021094 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1008 +20 10021095 . A . . END=10021101 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10021102 . C . . END=10021102 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10021103 . T . . END=10021106 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10021107 . A . . END=10021113 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10021114 . T . . END=10021114 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1066 +20 10021115 . T . . END=10021116 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10021117 . C . . END=10021117 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1127 +20 10021118 . A . . END=10021256 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1103 +20 10021257 . G . . END=10021257 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1051 +20 10021258 . T . . END=10021294 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1115 +20 10021295 . G . . END=10021295 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1138 +20 10021296 . C . . END=10021326 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1128 +20 10021327 . T . . END=10021327 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10021328 . T . . END=10021333 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10021334 . A . . END=10021334 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1227 +20 10021335 . A . . END=10021492 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,102,1161 +20 10021493 . G . . END=10021493 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1102 +20 10021494 . T . . END=10021507 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1163 +20 10021508 . T . . END=10021512 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10021513 . T . . END=10021515 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10021516 . T . . END=10021517 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1156 +20 10021518 . T . . END=10021523 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1017 +20 10021524 . T . . END=10021524 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10021525 . T . . END=10021526 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10021527 . T . . END=10021534 GT:DP:GQ:MIN_DP:PL 0/0:36:94:33:0,94,1092 +20 10021535 . C . . END=10021535 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,965 +20 10021536 . T . . END=10021536 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10021537 . C . . END=10021537 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,990 +20 10021538 . T . . END=10021538 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1052 +20 10021539 . G . . END=10021539 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,972 +20 10021540 . T . . END=10021544 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,993 +20 10021545 . G . . END=10021545 GT:DP:GQ:MIN_DP:PL 0/0:37:61:37:0,61,979 +20 10021546 . C . . END=10021551 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,106,1172 +20 10021552 . A . . END=10021552 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1050 +20 10021553 . T . . END=10021555 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10021556 . C . . END=10021556 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1107 +20 10021557 . T . . END=10021569 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10021570 . G . . END=10021570 GT:DP:GQ:MIN_DP:PL 0/0:42:89:42:0,89,1080 +20 10021571 . A . . END=10021625 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,101,1068 +20 10021626 . C . . END=10021626 GT:DP:GQ:MIN_DP:PL 0/0:47:86:47:0,86,1215 +20 10021627 . T . . END=10021642 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,103,1263 +20 10021643 . A . . END=10021643 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1196 +20 10021644 . G . . END=10021644 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +20 10021645 . G . . END=10021645 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1148 +20 10021646 . T . . END=10021684 GT:DP:GQ:MIN_DP:PL 0/0:50:99:42:0,115,1387 +20 10021685 . C . . END=10021685 GT:DP:GQ:MIN_DP:PL 0/0:49:82:49:0,82,1272 +20 10021686 . A . . END=10021945 GT:DP:GQ:MIN_DP:PL 0/0:50:99:40:0,99,1218 +20 10021946 . T A, 637.77 . BaseQRankSum=-1.906;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=176400,49;ReadPosRankSum=2.223 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:666,0,522,729,600,1329:10,11,12,14 +20 10021947 . A . . END=10021989 GT:DP:GQ:MIN_DP:PL 0/0:49:99:43:0,101,1413 +20 10021990 . G . . END=10021990 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1236 +20 10021991 . C . . END=10021991 GT:DP:GQ:MIN_DP:PL 0/0:41:77:41:0,77,1138 +20 10021992 . C . . END=10022008 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,107,1286 +20 10022009 . G . . END=10022009 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1182 +20 10022010 . A . . END=10022279 GT:DP:GQ:MIN_DP:PL 0/0:50:99:42:0,101,1311 +20 10022280 . A . . END=10022280 GT:DP:GQ:MIN_DP:PL 0/0:49:93:49:0,93,1422 +20 10022281 . T . . END=10022298 GT:DP:GQ:MIN_DP:PL 0/0:49:99:48:0,111,1370 +20 10022299 . A . . END=10022299 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1437 +20 10022300 . A . . END=10022337 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,108,1620 +20 10022338 . A . . END=10022338 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1122 +20 10022339 . T . . END=10022340 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10022341 . G . . END=10022341 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1107 +20 10022342 . C . . END=10022345 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10022346 . A . . END=10022346 GT:DP:GQ:MIN_DP:PL 0/0:38:64:38:0,64,1050 +20 10022347 . T . . END=10022352 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1160 +20 10022353 . T . . END=10022353 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1167 +20 10022354 . C . . END=10022367 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1485 +20 10022368 . G . . END=10022369 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1054 +20 10022370 . T . . END=10022373 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10022374 . G . . END=10022374 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1062 +20 10022375 . T . . END=10022490 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,105,1137 +20 10022491 . A . . END=10022491 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1336 +20 10022492 . C . . END=10022562 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,102,1281 +20 10022563 . A . . END=10022563 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1194 +20 10022564 . A . . END=10022604 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1143 +20 10022605 . A . . END=10022605 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1167 +20 10022606 . G . . END=10022624 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,111,1147 +20 10022625 . T . . END=10022625 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1236 +20 10022626 . T . . END=10022631 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,117,1755 +20 10022632 . T . . END=10022632 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1268 +20 10022633 . A . . END=10022635 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,117,1196 +20 10022636 . G . . END=10022636 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1224 +20 10022637 . T . . END=10022643 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,109,1319 +20 10022644 . G . . END=10022644 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1215 +20 10022645 . A . . END=10022693 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,108,1176 +20 10022694 . G . . END=10022694 GT:DP:GQ:MIN_DP:PL 0/0:46:84:46:0,84,1246 +20 10022695 . G . . END=10022695 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +20 10022696 . A . . END=10022696 GT:DP:GQ:MIN_DP:PL 0/0:43:78:43:0,78,1154 +20 10022697 . T . . END=10022771 GT:DP:GQ:MIN_DP:PL 0/0:47:99:44:0,107,1204 +20 10022772 . T . . END=10022772 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1444 +20 10022773 . T . . END=10022956 GT:DP:GQ:MIN_DP:PL 0/0:50:99:39:0,104,1128 +20 10022957 . A . . END=10022957 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1111 +20 10022958 . G . . END=10022961 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1620 +20 10022962 . C . . END=10022962 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1153 +20 10022963 . C . . END=10022971 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,110,1201 +20 10022972 . T . . END=10022972 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1258 +20 10022973 . G . . END=10022974 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,116,1130 +20 10022975 . A . . END=10022975 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1134 +20 10022976 . G . . END=10022977 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1199 +20 10022978 . A . . END=10022978 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1173 +20 10022979 . T . . END=10023021 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,107,1244 +20 10023022 . C . . END=10023022 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1209 +20 10023023 . T . . END=10023042 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1187 +20 10023043 . T . . END=10023045 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1072 +20 10023046 . A . . END=10023053 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1009 +20 10023054 . C . . END=10023060 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10023061 . A . . END=10023063 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10023064 . T . . END=10023064 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10023065 . C . . END=10023066 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10023067 . G . . END=10023067 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10023068 . T . . END=10023068 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1017 +20 10023069 . T . . END=10023072 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10023073 . A . . END=10023073 GT:DP:GQ:MIN_DP:PL 0/0:34:61:34:0,61,909 +20 10023074 . G . . END=10023074 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10023075 . T . . END=10023075 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,902 +20 10023076 . C . . END=10023083 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1049 +20 10023084 . T . . END=10023084 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,981 +20 10023085 . A . . END=10023085 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,908 +20 10023086 . T . . END=10023088 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10023089 . A . . END=10023089 GT:DP:GQ:MIN_DP:PL 0/0:34:58:34:0,58,912 +20 10023090 . C . . END=10023095 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,988 +20 10023096 . A . . END=10023096 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,908 +20 10023097 . C . . END=10023100 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10023101 . C . . END=10023101 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,935 +20 10023102 . T . . END=10023108 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10023109 . C . . END=10023109 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,885 +20 10023110 . A . . END=10023117 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,934 +20 10023118 . C . . END=10023118 GT:DP:GQ:MIN_DP:PL 0/0:34:42:34:0,42,919 +20 10023119 . T . . END=10023119 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10023120 . G . . END=10023120 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10023121 . G . . END=10023121 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,980 +20 10023122 . G . . END=10023124 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10023125 . T . . END=10023134 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10023135 . A . . END=10023135 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,953 +20 10023136 . C . . END=10023136 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,877 +20 10023137 . C . . END=10023140 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,963 +20 10023141 . A . . END=10023141 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,881 +20 10023142 . T . . END=10023144 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1023 +20 10023145 . G . . END=10023145 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,932 +20 10023146 . T . . END=10023146 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1037 +20 10023147 . A . . END=10023152 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,991 +20 10023153 . C . . END=10023153 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1076 +20 10023154 . T . . END=10023160 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1036 +20 10023161 . A . . END=10023161 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1155 +20 10023162 . T . . END=10023167 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1079 +20 10023168 . A . . END=10023168 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1147 +20 10023169 . T . . END=10023219 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,99,1214 +20 10023220 . C . . END=10023220 GT:DP:GQ:MIN_DP:PL 0/0:45:88:45:0,88,1301 +20 10023221 . T . . END=10023378 GT:DP:GQ:MIN_DP:PL 0/0:48:99:41:0,101,1249 +20 10023379 . T . . END=10023383 GT:DP:GQ:MIN_DP:PL 0/0:38:90:36:0,90,1350 +20 10023384 . T . . END=10023406 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10023407 . G . . END=10023408 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10023409 . G . . END=10023409 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,999 +20 10023410 . G . . END=10023412 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10023413 . T . . END=10023416 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10023417 . C . . END=10023422 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10023423 . C . . END=10023429 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1027 +20 10023430 . G . . END=10023430 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1036 +20 10023431 . C . . END=10023431 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1083 +20 10023432 . A . . END=10023432 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1065 +20 10023433 . C . . END=10023434 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1065 +20 10023435 . C . . END=10023437 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10023438 . A . . END=10023441 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10023442 . G A, 935.77 . BaseQRankSum=0.223;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=-0.546 GT:AD:DP:GQ:PL:SB 1/1:1,31,0:32:62:964,62,0,967,93,998:1,0,18,13 +20 10023443 . T . . END=10023443 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1026 +20 10023444 . A . . END=10023444 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10023445 . G . . END=10023446 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10023447 . C . . END=10023454 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20 10023455 . T . . END=10023455 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1076 +20 10023456 . T . . END=10023466 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10023467 . A . . END=10023470 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1039 +20 10023471 . T . . END=10023472 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10023473 . A . . END=10023473 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1097 +20 10023474 . G . . END=10023483 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1020 +20 10023484 . T . . END=10023484 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1053 +20 10023485 . G . . END=10023488 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1076 +20 10023489 . G . . END=10023489 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1027 +20 10023490 . A . . END=10023490 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10023491 . T . . END=10023493 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10023494 . C . . END=10023495 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1030 +20 10023496 . A . . END=10023498 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10023499 . A . . END=10023503 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10023504 . G . . END=10023506 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10023507 . T . . END=10023511 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10023512 . A . . END=10023524 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,950 +20 10023525 . C . . END=10023526 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1011 +20 10023527 . G . . END=10023527 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1001 +20 10023528 . C . . END=10023528 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,926 +20 10023529 . G . . END=10023545 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,986 +20 10023546 . A . . END=10023548 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20 10023549 . C . . END=10023555 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +20 10023556 . T . . END=10023560 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,93,1395 +20 10023561 . T . . END=10023561 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10023562 . A . . END=10023562 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1028 +20 10023563 . T . . END=10023571 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1090 +20 10023572 . G . . END=10023572 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1096 +20 10023573 . A . . END=10023603 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1142 +20 10023604 . T . . END=10023604 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1208 +20 10023605 . T . . END=10023877 GT:DP:GQ:MIN_DP:PL 0/0:50:99:39:0,102,1217 +20 10023878 . T . . END=10023878 GT:DP:GQ:MIN_DP:PL 0/0:44:80:44:0,80,1273 +20 10023879 . A . . END=10024106 GT:DP:GQ:MIN_DP:PL 0/0:55:99:43:0,104,1309 +20 10024107 . C . . END=10024107 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1322 +20 10024108 . G . . END=10024151 GT:DP:GQ:MIN_DP:PL 0/0:48:99:44:0,107,1367 +20 10024152 . A . . END=10024152 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1315 +20 10024153 . T . . END=10024229 GT:DP:GQ:MIN_DP:PL 0/0:46:99:38:0,100,1106 +20 10024230 . G . . END=10024230 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1181 +20 10024231 . A . . END=10024241 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1135 +20 10024242 . G . . END=10024243 GT:DP:GQ:MIN_DP:PL 0/0:37:80:36:0,80,1010 +20 10024244 . T . . END=10024254 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1121 +20 10024255 . A . . END=10024255 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1172 +20 10024256 . G . . END=10024256 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1127 +20 10024257 . A . . END=10024259 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10024260 . G . . END=10024270 GT:DP:GQ:MIN_DP:PL 0/0:37:91:36:0,91,1058 +20 10024271 . G . . END=10024271 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1111 +20 10024272 . T . . END=10024274 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 +20 10024275 . T . . END=10024275 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1096 +20 10024276 . G . . END=10024276 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10024277 . C . . END=10024277 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1012 +20 10024278 . T . . END=10024282 GT:DP:GQ:MIN_DP:PL 0/0:37:93:31:0,93,940 +20 10024283 . C . . END=10024283 GT:DP:GQ:MIN_DP:PL 0/0:36:48:36:0,48,951 +20 10024284 . T . . END=10024287 GT:DP:GQ:MIN_DP:PL 0/0:39:81:37:0,81,1215 +20 10024288 . C . . END=10024288 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1048 +20 10024289 . T . . END=10024293 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1131 +20 10024294 . C . . END=10024294 GT:DP:GQ:MIN_DP:PL 0/0:35:37:35:0,37,903 +20 10024295 . T . . END=10024298 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1125 +20 10024299 . C . . END=10024299 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +20 10024300 . CT C, 27.74 . BaseQRankSum=-0.639;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=96500,27;ReadPosRankSum=-1.457 GT:AD:DP:GQ:PL:SB 0/1:7,5,0:12:65:65,0,80,85,95,180:7,0,1,4 +20 10024302 . T . . END=10024302 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,684 +20 10024303 . T . . END=10024313 GT:DP:GQ:MIN_DP:PL 0/0:33:33:30:0,33,495 +20 10024314 . T . . END=10024314 GT:DP:GQ:MIN_DP:PL 0/0:31:36:31:0,36,540 +20 10024315 . T . . END=10024315 GT:DP:GQ:MIN_DP:PL 0/0:29:30:29:0,30,450 +20 10024316 . T . . END=10024316 GT:DP:GQ:MIN_DP:PL 0/0:30:33:30:0,33,495 +20 10024317 . T . . END=10024317 GT:DP:GQ:MIN_DP:PL 0/0:31:36:31:0,36,540 +20 10024318 . T . . END=10024318 GT:DP:GQ:MIN_DP:PL 0/0:33:45:33:0,45,675 +20 10024319 . T . . END=10024321 GT:DP:GQ:MIN_DP:PL 0/0:32:42:31:0,42,630 +20 10024322 . T . . END=10024322 GT:DP:GQ:MIN_DP:PL 0/0:30:45:30:0,45,675 +20 10024323 . T . . END=10024323 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,810 +20 10024324 . G . . END=10024324 GT:DP:GQ:MIN_DP:PL 0/0:25:45:25:0,45,733 +20 10024325 . G . . END=10024325 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +20 10024326 . A . . END=10024326 GT:DP:GQ:MIN_DP:PL 0/0:22:13:22:0,13,583 +20 10024327 . G . . END=10024338 GT:DP:GQ:MIN_DP:PL 0/0:22:60:21:0,60,634 +20 10024339 . C . . END=10024347 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,808 +20 10024348 . C . . END=10024350 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,935 +20 10024351 . G . . END=10024351 GT:DP:GQ:MIN_DP:PL 0/0:29:57:29:0,57,878 +20 10024352 . G . . END=10024357 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,853 +20 10024358 . G . . END=10024358 GT:DP:GQ:MIN_DP:PL 0/0:29:68:29:0,68,846 +20 10024359 . T . . END=10024359 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,982 +20 10024360 . G . . END=10024360 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,898 +20 10024361 . C . . END=10024361 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,934 +20 10024362 . A . . END=10024363 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,876 +20 10024364 . T . . END=10024378 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,909 +20 10024379 . T . . END=10024379 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1006 +20 10024380 . C . . END=10024386 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10024387 . A . . END=10024387 GT:DP:GQ:MIN_DP:PL 0/0:32:73:32:0,73,954 +20 10024388 . C T, 322.77 . BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=100800,28;ReadPosRankSum=0.267 GT:AD:DP:GQ:PL:SB 0/1:13,14,0:27:99:351,0,344,390,386,776:4,9,5,9 +20 10024389 . C . . END=10024389 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,1021 +20 10024390 . T . . END=10024405 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,987 +20 10024406 . A . . END=10024406 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,988 +20 10024407 . A . . END=10024407 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10024408 . G . . END=10024419 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1052 +20 10024420 . C . . END=10024420 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1056 +20 10024421 . C . . END=10024426 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10024427 . C . . END=10024428 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10024429 . C . . END=10024431 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10024432 . G . . END=10024432 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,944 +20 10024433 . A . . END=10024433 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10024434 . G . . END=10024434 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1024 +20 10024435 . T . . END=10024438 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1043 +20 10024439 . T . . END=10024439 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1088 +20 10024440 . G . . END=10024452 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,101,980 +20 10024453 . C . . END=10024454 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10024455 . T . . END=10024455 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10024456 . G . . END=10024456 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1014 +20 10024457 . C . . END=10024461 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1215 +20 10024462 . A . . END=10024462 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1125 +20 10024463 . T . . END=10024463 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1215 +20 10024464 . G . . END=10024467 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1080 +20 10024468 . C . . END=10024470 GT:DP:GQ:MIN_DP:PL 0/0:29:69:28:0,69,1035 +20 10024471 . T . . END=10024472 GT:DP:GQ:MIN_DP:PL 0/0:33:75:32:0,75,1125 +20 10024473 . A . . END=10024473 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10024474 . T . . END=10024474 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10024475 . T . . END=10024476 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10024477 . T . . END=10024484 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10024485 . A . . END=10024485 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1006 +20 10024486 . T . . END=10024486 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10024487 . T . . END=10024487 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1018 +20 10024488 . T . . END=10024488 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10024489 . T . . END=10024489 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,992 +20 10024490 . T . . END=10024497 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10024498 . A . . END=10024502 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10024503 . G . . END=10024504 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10024505 . T . . END=10024505 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,919 +20 10024506 . T . . END=10024507 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,929 +20 10024508 . A . . END=10024509 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,959 +20 10024510 . C . . END=10024510 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10024511 . A . . END=10024511 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,957 +20 10024512 . T . . END=10024512 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1049 +20 10024513 . G . . END=10024519 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1011 +20 10024520 . A . . END=10024520 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1049 +20 10024521 . G . . END=10024586 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,101,1018 +20 10024587 . A . . END=10024587 GT:DP:GQ:MIN_DP:PL 0/0:46:97:46:0,97,1292 +20 10024588 . G . . END=10024618 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,111,1272 +20 10024619 . A . . END=10024619 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1228 +20 10024620 . A . . END=10024639 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1097 +20 10024640 . T . . END=10024640 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1151 +20 10024641 . T . . END=10024664 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,104,1150 +20 10024665 . T . . END=10024665 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1220 +20 10024666 . C . . END=10024671 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1262 +20 10024672 . A . . END=10024672 GT:DP:GQ:MIN_DP:PL 0/0:42:80:42:0,80,1185 +20 10024673 . C . . END=10024674 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,120,1800 +20 10024675 . A . . END=10024675 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1180 +20 10024676 . A . . END=10024687 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,111,1253 +20 10024688 . C . . END=10024688 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1210 +20 10024689 . T . . END=10024714 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,106,1194 +20 10024715 . A . . END=10024715 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1102 +20 10024716 . A . . END=10024720 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1161 +20 10024721 . A . . END=10024721 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1124 +20 10024722 . T . . END=10024725 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,109,1224 +20 10024726 . A . . END=10024726 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1190 +20 10024727 . G . . END=10024728 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,114,1166 +20 10024729 . T . . END=10024729 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1223 +20 10024730 . G . . END=10024730 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,114,1159 +20 10024731 . T . . END=10024731 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1205 +20 10024732 . T . . END=10024949 GT:DP:GQ:MIN_DP:PL 0/0:52:99:39:0,113,1201 +20 10024950 . G T, 921.77 . BaseQRankSum=0.081;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=0.132 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,24,0:41:99:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024951 . G T, 921.77 . BaseQRankSum=1.138;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=-0.080 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,24,0:41:99:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024952 . T . . END=10024960 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,108,1285 +20 10024961 . T . . END=10024961 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1253 +20 10024962 . T . . END=10025052 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,101,1265 +20 10025053 . C . . END=10025053 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1357 +20 10025054 . A . . END=10025069 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,115,1465 +20 10025070 . C . . END=10025070 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1157 +20 10025071 . G . . END=10025131 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,108,1241 +20 10025132 . G . . END=10025132 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1216 +20 10025133 . C . . END=10025143 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10025144 . G . . END=10025144 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1051 +20 10025145 . A . . END=10025148 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10025149 . G . . END=10025149 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10025150 . C . . END=10025191 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1162 +20 10025192 . G . . END=10025192 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1171 +20 10025193 . T . . END=10025253 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,100,1145 +20 10025254 . T . . END=10025254 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1280 +20 10025255 . T . . END=10025322 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,101,1269 +20 10025323 . G . . END=10025323 GT:DP:GQ:MIN_DP:PL 0/0:45:76:45:0,76,1262 +20 10025324 . A . . END=10025503 GT:DP:GQ:MIN_DP:PL 0/0:57:99:41:0,106,1429 +20 10025504 . A . . END=10025504 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1235 +20 10025505 . G . . END=10025518 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,102,1530 +20 10025519 . A . . END=10025519 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1225 +20 10025520 . T . . END=10025521 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +20 10025522 . T . . END=10025523 GT:DP:GQ:MIN_DP:PL 0/0:40:90:39:0,90,1350 +20 10025524 . A . . END=10025530 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 +20 10025531 . T . . END=10025532 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10025533 . T . . END=10025555 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1206 +20 10025556 . C . . END=10025556 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1189 +20 10025557 . T . . END=10025560 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10025561 . C . . END=10025561 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1192 +20 10025562 . T . . END=10025562 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1164 +20 10025563 . C . . END=10025569 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1194 +20 10025570 . G . . END=10025570 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1158 +20 10025571 . T . . END=10025573 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,108,1620 +20 10025574 . G . . END=10025574 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1174 +20 10025575 . T . . END=10025620 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1147 +20 10025621 . G . . END=10025621 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1223 +20 10025622 . A . . END=10025642 GT:DP:GQ:MIN_DP:PL 0/0:48:99:41:0,120,1800 +20 10025643 . G . . END=10025643 GT:DP:GQ:MIN_DP:PL 0/0:51:82:51:0,82,1440 +20 10025644 . A . . END=10026301 GT:DP:GQ:MIN_DP:PL 0/0:54:99:38:0,102,1165 +20 10026302 . C . . END=10026302 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1139 +20 10026303 . A . . END=10026307 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10026308 . T . . END=10026308 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1136 +20 10026309 . G . . END=10026313 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1178 +20 10026314 . T . . END=10026314 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1157 +20 10026315 . G . . END=10026347 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,114,1331 +20 10026348 . A . . END=10026348 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1279 +20 10026349 . A . . END=10026356 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,120,1800 +20 10026357 . T C, 465.77 . BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=140400,39;ReadPosRankSum=1.618 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:494,0,521,552,578,1130:8,11,11,8 +20 10026358 . A . . END=10026383 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,102,1231 +20 10026384 . G . . END=10026384 GT:DP:GQ:MIN_DP:PL 0/0:45:75:45:0,75,1206 +20 10026385 . A . . END=10026439 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,111,1254 +20 10026440 . T . . END=10026440 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1172 +20 10026441 . A . . END=10026461 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10026462 . T . . END=10026464 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10026465 . C . . END=10026505 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1053 +20 10026506 . C . . END=10026507 GT:DP:GQ:MIN_DP:PL 0/0:42:91:41:0,91,1173 +20 10026508 . C . . END=10026524 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,107,1246 +20 10026525 . T . . END=10026525 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1190 +20 10026526 . C . . END=10026541 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,101,1176 +20 10026542 . T . . END=10026542 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1244 +20 10026543 . G . . END=10026575 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1149 +20 10026576 . G . . END=10026576 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1162 +20 10026577 . T . . END=10026599 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1178 +20 10026600 . C . . END=10026600 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1257 +20 10026601 . C . . END=10026696 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,104,1295 +20 10026697 . T . . END=10026697 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1363 +20 10026698 . C . . END=10026756 GT:DP:GQ:MIN_DP:PL 0/0:52:99:47:0,112,1425 +20 10026757 . A . . END=10026757 GT:DP:GQ:MIN_DP:PL 0/0:54:98:54:0,98,1593 +20 10026758 . A . . END=10026758 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1535 +20 10026759 . C . . END=10026793 GT:DP:GQ:MIN_DP:PL 0/0:55:99:52:0,120,1800 +20 10026794 . C T, 572.77 . BaseQRankSum=2.153;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=187200,52;ReadPosRankSum=-0.660 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:601,0,657,682,729,1411:15,12,11,13 +20 10026795 . G . . END=10027060 GT:DP:GQ:MIN_DP:PL 0/0:53:99:38:0,102,1116 +20 10027061 . A . . END=10027061 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1170 +20 10027062 . T . . END=10027073 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,106,1243 +20 10027074 . G . . END=10027074 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1323 +20 10027075 . G . . END=10027080 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +20 10027081 . T . . END=10027081 GT:DP:GQ:MIN_DP:PL 0/0:46:91:46:0,91,1290 +20 10027082 . A . . END=10027193 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,101,1160 +20 10027194 . T . . END=10027201 GT:DP:GQ:MIN_DP:PL 0/0:46:90:45:0,90,1350 +20 10027202 . A . . END=10027203 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +20 10027204 . A . . END=10027204 GT:DP:GQ:MIN_DP:PL 0/0:47:75:47:0,75,1125 +20 10027205 . T . . END=10027206 GT:DP:GQ:MIN_DP:PL 0/0:46:60:45:0,60,900 +20 10027207 . G . . END=10027207 GT:DP:GQ:MIN_DP:PL 0/0:44:57:44:0,57,855 +20 10027208 . C . . END=10027208 GT:DP:GQ:MIN_DP:PL 0/0:44:54:44:0,54,810 +20 10027209 . T . . END=10027210 GT:DP:GQ:MIN_DP:PL 0/0:45:45:44:0,45,675 +20 10027211 . A . . END=10027212 GT:DP:GQ:MIN_DP:PL 0/0:45:42:44:0,42,630 +20 10027213 . T . . END=10027213 GT:DP:GQ:MIN_DP:PL 0/0:45:33:45:0,33,495 +20 10027214 . G . . END=10027216 GT:DP:GQ:MIN_DP:PL 0/0:44:30:42:0,30,450 +20 10027217 . T . . END=10027219 GT:DP:GQ:MIN_DP:PL 0/0:44:27:44:0,27,405 +20 10027220 . C . . END=10027220 GT:DP:GQ:MIN_DP:PL 0/0:43:24:43:0,24,360 +20 10027221 . T . . END=10027222 GT:DP:GQ:MIN_DP:PL 0/0:43:18:43:0,18,270 +20 10027223 . A . . END=10027225 GT:DP:GQ:MIN_DP:PL 0/0:41:15:41:0,15,225 +20 10027226 . A . . END=10027227 GT:DP:GQ:MIN_DP:PL 0/0:43:18:43:0,18,270 +20 10027228 . G . . END=10027229 GT:DP:GQ:MIN_DP:PL 0/0:44:15:43:0,15,225 +20 10027230 . A . . END=10027231 GT:DP:GQ:MIN_DP:PL 0/0:45:9:44:0,9,135 +20 10027232 . A . . END=10027233 GT:DP:GQ:MIN_DP:PL 0/0:46:12:45:0,12,180 +20 10027234 . A ATTAG, 1729.73 . BaseQRankSum=-1.098;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.375;RAW_MQandDP=151500,41;ReadPosRankSum=0.211 GT:AD:DP:GQ:PL:SB 1/1:1,40,0:41:65:1767,65,0,1770,126,1832:0,1,19,21 +20 10027235 . T . . END=10027235 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,0 +20 10027236 . T . . END=10027304 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,114,1710 +20 10027305 . A . . END=10027305 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1267 +20 10027306 . C . . END=10027327 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,108,1208 +20 10027328 . T . . END=10027328 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1286 +20 10027329 . T . . END=10027355 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,101,1207 +20 10027356 . G . . END=10027356 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1212 +20 10027357 . T . . END=10027512 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,100,1167 +20 10027513 . A . . END=10027513 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1256 +20 10027514 . C . . END=10027517 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1146 +20 10027518 . C . . END=10027519 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1178 +20 10027520 . T . . END=10027551 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,105,1159 +20 10027552 . G . . END=10027552 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1089 +20 10027553 . T . . END=10027553 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1163 +20 10027554 . C . . END=10027554 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1078 +20 10027555 . C . . END=10027801 GT:DP:GQ:MIN_DP:PL 0/0:49:99:36:0,100,1146 +20 10027802 . A . . END=10027802 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1215 +20 10027803 . T . . END=10027867 GT:DP:GQ:MIN_DP:PL 0/0:50:99:42:0,115,1296 +20 10027868 . A G, 898.77 . BaseQRankSum=-4.141;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=162000,45;ReadPosRankSum=-0.875 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,24,0:43:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:10,9,14,10 +20 10027869 . A . . END=10027871 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,120,1800 +20 10027872 . A G, 898.77 . BaseQRankSum=-0.855;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=-0.881 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,24,0:42:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:9,9,14,10 +20 10027873 . G . . END=10027989 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,105,1244 +20 10027990 . C . . END=10027990 GT:DP:GQ:MIN_DP:PL 0/0:42:75:42:0,75,1081 +20 10027991 . G . . END=10028073 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,103,1137 +20 10028074 . G . . END=10028074 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1216 +20 10028075 . G . . END=10028079 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10028080 . C . . END=10028080 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10028081 . A . . END=10028082 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10028083 . A . . END=10028087 GT:DP:GQ:MIN_DP:PL 0/0:39:93:36:0,93,1395 +20 10028088 . G . . END=10028088 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10028089 . A . . END=10028096 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20 10028097 . C . . END=10028102 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10028103 . G . . END=10028103 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10028104 . A . . END=10028111 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10028112 . C . . END=10028112 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1062 +20 10028113 . T . . END=10028116 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1108 +20 10028117 . T . . END=10028117 GT:DP:GQ:MIN_DP:PL 0/0:36:82:36:0,82,1102 +20 10028118 . T . . END=10028121 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1156 +20 10028122 . A . . END=10028122 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1074 +20 10028123 . A . . END=10028126 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10028127 . G . . END=10028127 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10028128 . C . . END=10028146 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1013 +20 10028147 . T . . END=10028155 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10028156 . A . . END=10028156 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10028157 . A . . END=10028157 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10028158 . T . . END=10028180 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1152 +20 10028181 . G . . END=10028181 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1209 +20 10028182 . A . . END=10028301 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,105,1274 +20 10028302 . G T, 605.77 . BaseQRankSum=1.501;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=176400,49;ReadPosRankSum=0.800 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:30,18,0:48:99:0|1:10028302_G_T:634,0,1476,724,1533,2257:14,16,14,4 +20 10028303 . T . . END=10028315 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,114,1334 +20 10028316 . C T, 592.77 . BaseQRankSum=0.911;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=-0.719 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:25,17,0:42:99:0|1:10028302_G_T:621,0,1379,699,1433,2132:12,13,12,5 +20 10028317 . T . . END=10028346 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1238 +20 10028347 . T . . END=10028347 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1149 +20 10028348 . C . . END=10028351 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1166 +20 10028352 . A . . END=10028352 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1166 +20 10028353 . G . . END=10028370 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1530 +20 10028371 . T . . END=10028371 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1138 +20 10028372 . T . . END=10028400 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,101,1234 +20 10028401 . T . . END=10028401 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1052 +20 10028402 . C . . END=10028723 GT:DP:GQ:MIN_DP:PL 0/0:44:99:35:0,99,1112 +20 10028724 . T . . END=10028724 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1170 +20 10028725 . A G, 438.77 . BaseQRankSum=-2.165;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=129600,36;ReadPosRankSum=0.184 GT:AD:DP:GQ:PL:SB 0/1:17,19,0:36:99:467,0,436,518,493,1011:8,9,8,11 +20 10028726 . T . . END=10028727 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10028728 . G . . END=10028728 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10028729 . A . . END=10028738 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1002 +20 10028739 . C . . END=10028739 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1058 +20 10028740 . T . . END=10028756 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20 10028757 . G . . END=10028757 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1057 +20 10028758 . A . . END=10028758 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10028759 . G . . END=10028759 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1026 +20 10028760 . T . . END=10028779 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,101,1079 +20 10028780 . C . . END=10028780 GT:DP:GQ:MIN_DP:PL 0/0:40:78:40:0,78,1111 +20 10028781 . A . . END=10028847 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,99,1209 +20 10028848 . T . . END=10028849 GT:DP:GQ:MIN_DP:PL 0/0:45:93:45:0,93,1395 +20 10028850 . T . . END=10028852 GT:DP:GQ:MIN_DP:PL 0/0:43:81:41:0,81,1215 +20 10028853 . G . . END=10028853 GT:DP:GQ:MIN_DP:PL 0/0:44:78:44:0,78,1170 +20 10028854 . C . . END=10028865 GT:DP:GQ:MIN_DP:PL 0/0:42:63:39:0,63,945 +20 10028866 . A . . END=10028866 GT:DP:GQ:MIN_DP:PL 0/0:39:32:39:0,32,952 +20 10028867 . A ATG, 546.73 . BaseQRankSum=-0.061;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.235;RAW_MQandDP=132200,36;ReadPosRankSum=-0.250 GT:AD:DP:GQ:PL:SB 0/1:13,19,0:32:99:584,0,361,623,421,1045:6,7,9,10 +20 10028868 . T . . END=10028868 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,31 +20 10028869 . G . . END=10028869 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1143 +20 10028870 . T . . END=10028871 GT:DP:GQ:MIN_DP:PL 0/0:41:80:41:0,80,1120 +20 10028872 . T . . END=10028872 GT:DP:GQ:MIN_DP:PL 0/0:42:70:42:0,70,1196 +20 10028873 . G . . END=10028897 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1282 +20 10028898 . A . . END=10028898 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1219 +20 10028899 . A . . END=10028899 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1126 +20 10028900 . A . . END=10028900 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10028901 . A . . END=10028901 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1128 +20 10028902 . T . . END=10028906 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10028907 . T . . END=10028907 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1087 +20 10028908 . T . . END=10028908 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1167 +20 10028909 . A . . END=10028910 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1075 +20 10028911 . T . . END=10028964 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,100,1119 +20 10028965 . A . . END=10028965 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1084 +20 10028966 . T . . END=10028970 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10028971 . A . . END=10028971 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1071 +20 10028972 . A . . END=10028983 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10028984 . A . . END=10028984 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1131 +20 10028985 . G . . END=10028989 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1575 +20 10028990 . A . . END=10028990 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1204 +20 10028991 . C . . END=10028991 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20 10028992 . C . . END=10028992 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1160 +20 10028993 . A . . END=10029056 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1151 +20 10029057 . A . . END=10029064 GT:DP:GQ:MIN_DP:PL 0/0:37:90:34:0,90,1121 +20 10029065 . T . . END=10029065 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1070 +20 10029066 . C . . END=10029066 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10029067 . C . . END=10029067 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1018 +20 10029068 . A . . END=10029068 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10029069 . A . . END=10029069 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,981 +20 10029070 . T . . END=10029071 GT:DP:GQ:MIN_DP:PL 0/0:34:86:33:0,86,1056 +20 10029072 . A . . END=10029074 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10029075 . C . . END=10029076 GT:DP:GQ:MIN_DP:PL 0/0:35:80:34:0,80,990 +20 10029077 . C . . END=10029078 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10029079 . T . . END=10029088 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1108 +20 10029089 . T . . END=10029089 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1229 +20 10029090 . A . . END=10029103 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,108,1373 +20 10029104 . G A, 1318.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154800,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1347,128,0,1347,128,1347:0,0,21,22 +20 10029105 . T . . END=10029341 GT:DP:GQ:MIN_DP:PL 0/0:48:99:42:0,113,1270 +20 10029342 . C . . END=10029342 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1194 +20 10029343 . T . . END=10029376 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,99,1221 +20 10029377 . C . . END=10029377 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1184 +20 10029378 . A . . END=10029385 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,111,1665 +20 10029386 . A . . END=10029386 GT:DP:GQ:MIN_DP:PL 0/0:40:70:40:0,70,1172 +20 10029387 . A . . END=10029645 GT:DP:GQ:MIN_DP:PL 0/0:49:99:36:0,101,1238 +20 10029646 . G . . END=10029662 GT:DP:GQ:MIN_DP:PL 0/0:36:92:33:0,92,1120 +20 10029663 . G . . END=10029663 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1031 +20 10029664 . G . . END=10029665 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10029666 . A . . END=10029673 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +20 10029674 . T . . END=10029678 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1049 +20 10029679 . C . . END=10029679 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,982 +20 10029680 . C . . END=10029681 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10029682 . G . . END=10029692 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10029693 . A . . END=10029693 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,980 +20 10029694 . A . . END=10029695 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10029696 . T . . END=10029696 GT:DP:GQ:MIN_DP:PL 0/0:32:50:32:0,50,959 +20 10029697 . T . . END=10029698 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10029699 . A . . END=10029699 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,1033 +20 10029700 . A . . END=10029700 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1053 +20 10029701 . T . . END=10029701 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10029702 . G . . END=10029714 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,1260 +20 10029715 . T . . END=10029715 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,904 +20 10029716 . T . . END=10029717 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10029718 . C . . END=10029719 GT:DP:GQ:MIN_DP:PL 0/0:30:76:29:0,76,895 +20 10029720 . T . . END=10029729 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,971 +20 10029730 . A . . END=10029731 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,976 +20 10029732 . G . . END=10029734 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10029735 . C . . END=10029741 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10029742 . C . . END=10029746 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10029747 . G . . END=10029765 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1011 +20 10029766 . T . . END=10029769 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10029770 . A . . END=10029772 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10029773 . A . . END=10029775 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10029776 . T . . END=10029776 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1039 +20 10029777 . C . . END=10029778 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1107 +20 10029779 . A . . END=10029783 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10029784 . T . . END=10029784 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1028 +20 10029785 . A . . END=10029789 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10029790 . T . . END=10029791 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1073 +20 10029792 . C . . END=10029792 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,959 +20 10029793 . T . . END=10029797 GT:DP:GQ:MIN_DP:PL 0/0:35:92:34:0,92,1040 +20 10029798 . C . . END=10029798 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1067 +20 10029799 . T . . END=10029799 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1089 +20 10029800 . A . . END=10029810 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10029811 . T . . END=10029811 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1058 +20 10029812 . A . . END=10029812 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1172 +20 10029813 . A . . END=10029813 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1080 +20 10029814 . A . . END=10029815 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,949 +20 10029816 . G . . END=10029816 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,916 +20 10029817 . T . . END=10029828 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,102,1069 +20 10029829 . A . . END=10029829 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1227 +20 10029830 . A . . END=10029835 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,105,1062 +20 10029836 . C . . END=10029836 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1083 +20 10029837 . A . . END=10029847 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1122 +20 10029848 . C . . END=10029848 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1125 +20 10029849 . A . . END=10029850 GT:DP:GQ:MIN_DP:PL 0/0:40:96:38:0,96,1077 +20 10029851 . A . . END=10030033 GT:DP:GQ:MIN_DP:PL 0/0:46:99:35:0,99,1185 +20 10030034 . T . . END=10030036 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10030037 . G . . END=10030044 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10030045 . C . . END=10030046 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10030047 . T . . END=10030047 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10030048 . G . . END=10030049 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10030050 . A . . END=10030050 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10030051 . A . . END=10030051 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1350 +20 10030052 . T . . END=10030052 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10030053 . G . . END=10030053 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1350 +20 10030054 . G . . END=10030058 GT:DP:GQ:MIN_DP:PL 0/0:36:84:34:0,84,1013 +20 10030059 . A . . END=10030061 GT:DP:GQ:MIN_DP:PL 0/0:33:72:31:0,72,1080 +20 10030062 . T . . END=10030069 GT:DP:GQ:MIN_DP:PL 0/0:29:69:28:0,69,1035 +20 10030070 . A . . END=10030093 GT:DP:GQ:MIN_DP:PL 0/0:27:70:25:0,70,716 +20 10030094 . G . . END=10030095 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,800 +20 10030096 . A . . END=10030096 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10030097 . G . . END=10030097 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,838 +20 10030098 . G . . END=10030098 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,890 +20 10030099 . C . . END=10030099 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,806 +20 10030100 . G . . END=10030104 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,799 +20 10030105 . C . . END=10030105 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,916 +20 10030106 . A . . END=10030106 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10030107 . A . . END=10030107 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,971 +20 10030108 . A . . END=10030108 GT:DP:GQ:MIN_DP:PL 0/0:32:56:32:0,56,911 +20 10030109 . G . . END=10030114 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10030115 . A . . END=10030116 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1078 +20 10030117 . C . . END=10030127 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1064 +20 10030128 . G . . END=10030128 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,863 +20 10030129 . C . . END=10030139 GT:DP:GQ:MIN_DP:PL 0/0:33:84:31:0,84,1260 +20 10030140 . G . . END=10030140 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,939 +20 10030141 . A . . END=10030142 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,907 +20 10030143 . T . . END=10030143 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,977 +20 10030144 . C . . END=10030145 GT:DP:GQ:MIN_DP:PL 0/0:30:71:30:0,71,845 +20 10030146 . C . . END=10030146 GT:DP:GQ:MIN_DP:PL 0/0:31:65:31:0,65,939 +20 10030147 . T . . END=10030147 GT:DP:GQ:MIN_DP:PL 0/0:33:53:33:0,53,926 +20 10030148 . A . . END=10030148 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10030149 . A . . END=10030149 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,971 +20 10030150 . T . . END=10030151 GT:DP:GQ:MIN_DP:PL 0/0:35:72:34:0,72,1016 +20 10030152 . A . . END=10030153 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10030154 . C . . END=10030155 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1069 +20 10030156 . A . . END=10030156 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10030157 . G . . END=10030157 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1041 +20 10030158 . C . . END=10030159 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1073 +20 10030160 . A . . END=10030160 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1111 +20 10030161 . G . . END=10030161 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10030162 . G . . END=10030162 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1120 +20 10030163 . C . . END=10030163 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1097 +20 10030164 . C . . END=10030164 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10030165 . A . . END=10030166 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1154 +20 10030167 . G . . END=10030167 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1139 +20 10030168 . A . . END=10030168 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,103,1176 +20 10030169 . G . . END=10030169 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1185 +20 10030170 . C . . END=10030170 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1074 +20 10030171 . C . . END=10030171 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1102 +20 10030172 . A . . END=10030172 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10030173 . A . . END=10030174 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1153 +20 10030175 . A . . END=10030175 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1135 +20 10030176 . A . . END=10030176 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1094 +20 10030177 . T . . END=10030177 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1076 +20 10030178 . C . . END=10030180 GT:DP:GQ:MIN_DP:PL 0/0:37:77:36:0,77,1047 +20 10030181 . A . . END=10030181 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1108 +20 10030182 . A . . END=10030182 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10030183 . T . . END=10030183 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1000 +20 10030184 . C . . END=10030184 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1062 +20 10030185 . C . . END=10030185 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1094 +20 10030186 . A . . END=10030186 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1125 +20 10030187 . C . . END=10030187 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1025 +20 10030188 . T A, 385.77 . BaseQRankSum=1.357;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=115200,32;ReadPosRankSum=0.917 GT:AD:DP:GQ:PL:SB 0/1:16,15,0:31:99:414,0,398,461,443,905:9,7,10,5 +20 10030189 . G . . END=10030189 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1082 +20 10030190 . T . . END=10030192 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10030193 . G . . END=10030193 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1082 +20 10030194 . C . . END=10030197 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10030198 . T . . END=10030198 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,936 +20 10030199 . A . . END=10030205 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,946 +20 10030206 . A . . END=10030206 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,985 +20 10030207 . C . . END=10030216 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,942 +20 10030217 . G . . END=10030217 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,907 +20 10030218 . T . . END=10030225 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10030226 . G . . END=10030226 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,999 +20 10030227 . A . . END=10030227 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,996 +20 10030228 . G . . END=10030230 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10030231 . T . . END=10030231 GT:DP:GQ:MIN_DP:PL 0/0:32:70:32:0,70,939 +20 10030232 . T . . END=10030232 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,939 +20 10030233 . T . . END=10030233 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,933 +20 10030234 . C . . END=10030237 GT:DP:GQ:MIN_DP:PL 0/0:33:85:31:0,85,1014 +20 10030238 . C . . END=10030239 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10030240 . G . . END=10030255 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10030256 . T . . END=10030272 GT:DP:GQ:MIN_DP:PL 0/0:29:75:26:0,75,803 +20 10030273 . A . . END=10030275 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20 10030276 . C . . END=10030282 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,821 +20 10030283 . A . . END=10030285 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10030286 . A . . END=10030286 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,868 +20 10030287 . A . . END=10030289 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10030290 . A . . END=10030290 GT:DP:GQ:MIN_DP:PL 0/0:30:68:30:0,68,839 +20 10030291 . C . . END=10030302 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10030303 . G . . END=10030303 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10030304 . T . . END=10030304 GT:DP:GQ:MIN_DP:PL 0/0:30:61:30:0,61,852 +20 10030305 . T . . END=10030305 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,923 +20 10030306 . G . . END=10030308 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,923 +20 10030309 . G . . END=10030309 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,873 +20 10030310 . G . . END=10030316 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,952 +20 10030317 . A . . END=10030317 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,924 +20 10030318 . G . . END=10030318 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,883 +20 10030319 . G . . END=10030320 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10030321 . T . . END=10030321 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10030322 . T . . END=10030322 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10030323 . A . . END=10030323 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,948 +20 10030324 . T . . END=10030324 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,963 +20 10030325 . G . . END=10030329 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10030330 . C . . END=10030335 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1016 +20 10030336 . A . . END=10030336 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1045 +20 10030337 . C . . END=10030349 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1027 +20 10030350 . T . . END=10030352 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10030353 . C . . END=10030353 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,980 +20 10030354 . T . . END=10030372 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1112 +20 10030373 . C . . END=10030373 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1109 +20 10030374 . G . . END=10030446 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,105,1175 +20 10030447 . G . . END=10030447 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1094 +20 10030448 . T . . END=10030451 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,115,1265 +20 10030452 . G A, 739.77 . BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=-0.404 GT:AD:DP:GQ:PL:SB 0/1:12,28,0:40:99:768,0,241,804,325,1129:8,4,15,13 +20 10030453 . A . . END=10030477 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,102,1208 +20 10030478 . G . . END=10030478 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1197 +20 10030479 . G . . END=10030505 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,100,1192 +20 10030506 . T . . END=10030506 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1157 +20 10030507 . C . . END=10030510 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1190 +20 10030511 . C . . END=10030511 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1101 +20 10030512 . C . . END=10030530 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1138 +20 10030531 . T . . END=10030531 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1111 +20 10030532 . C . . END=10030806 GT:DP:GQ:MIN_DP:PL 0/0:48:99:35:0,100,1034 +20 10030807 . G . . END=10030807 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1192 +20 10030808 . A . . END=10030810 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,100,1109 +20 10030811 . G . . END=10030811 GT:DP:GQ:MIN_DP:PL 0/0:42:77:42:0,77,1172 +20 10030812 . C . . END=10030821 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,102,1136 +20 10030822 . T . . END=10030822 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1272 +20 10030823 . G . . END=10030830 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10030831 . A . . END=10030831 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1130 +20 10030832 . G . . END=10030832 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10030833 . A . . END=10030835 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1110 +20 10030836 . T . . END=10030837 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10030838 . G . . END=10030838 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10030839 . T . . END=10030845 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1211 +20 10030846 . T . . END=10030846 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10030847 . C . . END=10030856 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1153 +20 10030857 . A . . END=10030857 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1079 +20 10030858 . A . . END=10030858 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1142 +20 10030859 . G . . END=10030930 GT:DP:GQ:MIN_DP:PL 0/0:50:99:36:0,107,1094 +20 10030931 . C A, 542.77 . BaseQRankSum=3.725;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=190800,53;ReadPosRankSum=-0.263 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:571,0,659,662,725,1387:13,18,5,17 +20 10030932 . G . . END=10031065 GT:DP:GQ:MIN_DP:PL 0/0:55:99:37:0,99,1132 +20 10031066 . C . . END=10031066 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,978 +20 10031067 . T . . END=10031069 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1176 +20 10031070 . T . . END=10031070 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1148 +20 10031071 . T . . END=10031078 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10031079 . G . . END=10031080 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1127 +20 10031081 . C . . END=10031081 GT:DP:GQ:MIN_DP:PL 0/0:36:48:36:0,48,972 +20 10031082 . T . . END=10031082 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10031083 . T . . END=10031083 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10031084 . T . . END=10031087 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10031088 . A . . END=10031089 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10031090 . A . . END=10031090 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1125 +20 10031091 . G . . END=10031091 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10031092 . T . . END=10031092 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1081 +20 10031093 . C . . END=10031093 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10031094 . T . . END=10031094 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10031095 . A . . END=10031095 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1150 +20 10031096 . A . . END=10031098 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10031099 . A . . END=10031099 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1081 +20 10031100 . A . . END=10031100 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1049 +20 10031101 . T . . END=10031103 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10031104 . C . . END=10031104 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,869 +20 10031105 . C . . END=10031105 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10031106 . T . . END=10031106 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1023 +20 10031107 . A . . END=10031107 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10031108 . T . . END=10031108 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10031109 . A . . END=10031109 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1079 +20 10031110 . A . . END=10031110 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10031111 . A . . END=10031113 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10031114 . T . . END=10031115 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10031116 . T . . END=10031118 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10031119 . G . . END=10031119 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1132 +20 10031120 . T . . END=10031130 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1166 +20 10031131 . G . . END=10031136 GT:DP:GQ:MIN_DP:PL 0/0:37:96:34:0,96,1440 +20 10031137 . T . . END=10031139 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10031140 . G . . END=10031140 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10031141 . G . . END=10031145 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1015 +20 10031146 . A . . END=10031147 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1001 +20 10031148 . A . . END=10031148 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10031149 . A . . END=10031149 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1074 +20 10031150 . G . . END=10031164 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1037 +20 10031165 . G . . END=10031165 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1110 +20 10031166 . A . . END=10031167 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1169 +20 10031168 . T . . END=10031168 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1323 +20 10031169 . T . . END=10031174 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,102,1349 +20 10031175 . A . . END=10031175 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1319 +20 10031176 . T . . END=10031225 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,99,1288 +20 10031226 . T . . END=10031234 GT:DP:GQ:MIN_DP:PL 0/0:49:90:46:0,90,1350 +20 10031235 . T . . END=10031239 GT:DP:GQ:MIN_DP:PL 0/0:48:84:47:0,84,1260 +20 10031240 . G . . END=10031253 GT:DP:GQ:MIN_DP:PL 0/0:47:75:43:0,75,1125 +20 10031254 . A AT, 545.73 . BaseQRankSum=0.497;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=159700,44;ReadPosRankSum=0.278 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:583,0,725,653,782,1435:12,11,8,11 +20 10031255 . T . . END=10031255 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,216 +20 10031256 . G . . END=10031341 GT:DP:GQ:MIN_DP:PL 0/0:48:99:45:0,105,1321 +20 10031342 . G A, 591.77 . BaseQRankSum=3.427;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=162000,45;ReadPosRankSum=0.857 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:620,0,534,685,603,1288:12,10,10,13 +20 10031343 . A . . END=10031432 GT:DP:GQ:MIN_DP:PL 0/0:45:99:37:0,100,1121 +20 10031433 . T . . END=10031433 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1143 +20 10031434 . T . . END=10031451 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1089 +20 10031452 . T . . END=10031452 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1094 +20 10031453 . G . . END=10031457 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1090 +20 10031458 . T . . END=10031458 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1097 +20 10031459 . C . . END=10031459 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,104,1042 +20 10031460 . T . . END=10031462 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10031463 . A . . END=10031498 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1103 +20 10031499 . A . . END=10031499 GT:DP:GQ:MIN_DP:PL 0/0:41:77:41:0,77,1157 +20 10031500 . T . . END=10031500 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +20 10031501 . G . . END=10031501 GT:DP:GQ:MIN_DP:PL 0/0:39:79:39:0,79,1111 +20 10031502 . C . . END=10031506 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20 10031507 . G . . END=10031507 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1049 +20 10031508 . T . . END=10031510 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10031511 . C . . END=10031511 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1148 +20 10031512 . A . . END=10031521 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,101,1126 +20 10031522 . G . . END=10031522 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1122 +20 10031523 . C . . END=10031764 GT:DP:GQ:MIN_DP:PL 0/0:46:99:38:0,101,1152 +20 10031765 . G . . END=10031765 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1100 +20 10031766 . T . . END=10031769 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10031770 . A . . END=10031770 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1184 +20 10031771 . A . . END=10031772 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1213 +20 10031773 . A . . END=10031773 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1227 +20 10031774 . T . . END=10031794 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1153 +20 10031795 . G . . END=10031797 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10031798 . G A, 1027.77 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1056,102,0,1056,102,1056:0,0,15,19 +20 10031799 . T . . END=10031813 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1056 +20 10031814 . A . . END=10031818 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10031819 . G . . END=10031819 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10031820 . T . . END=10031822 GT:DP:GQ:MIN_DP:PL 0/0:34:87:32:0,87,1305 +20 10031823 . T . . END=10031825 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10031826 . T . . END=10031826 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,980 +20 10031827 . C T, 288.77 . BaseQRankSum=0.391;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=115200,32;ReadPosRankSum=-0.675 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:317,0,456,371,495,866:8,10,4,9 +20 10031828 . T . . END=10031832 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10031833 . A . . END=10031833 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10031834 . G . . END=10031834 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10031835 . T . . END=10031842 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10031843 . T . . END=10031843 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1081 +20 10031844 . G . . END=10031913 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1079 +20 10031914 . A . . END=10031915 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10031916 . T . . END=10031953 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1057 +20 10031954 . A . . END=10031960 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1037 +20 10031961 . T . . END=10031961 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1088 +20 10031962 . A . . END=10031969 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10031970 . A . . END=10031989 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1132 +20 10031990 . T . . END=10031990 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1146 +20 10031991 . G . . END=10032010 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1180 +20 10032011 . C . . END=10032011 GT:DP:GQ:MIN_DP:PL 0/0:40:76:40:0,76,1104 +20 10032012 . A . . END=10032093 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,101,1140 +20 10032094 . G A, 648.77 . BaseQRankSum=2.286;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=176400,49;ReadPosRankSum=0.092 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:677,0,458,740,539,1279:12,9,17,10 +20 10032095 . T . . END=10032168 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,102,1220 +20 10032169 . C . . END=10032169 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1152 +20 10032170 . A . . END=10032186 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,110,1209 +20 10032187 . A . . END=10032187 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1252 +20 10032188 . A . . END=10032199 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,100,1156 +20 10032200 . A . . END=10032200 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1190 +20 10032201 . G . . END=10032205 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1156 +20 10032206 . C . . END=10032206 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1115 +20 10032207 . A . . END=10032207 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10032208 . A . . END=10032208 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1205 +20 10032209 . T . . END=10032221 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,101,1150 +20 10032222 . T . . END=10032222 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1065 +20 10032223 . A . . END=10032232 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1029 +20 10032233 . G . . END=10032233 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1078 +20 10032234 . A . . END=10032243 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1150 +20 10032244 . T . . END=10032244 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1186 +20 10032245 . T . . END=10032412 GT:DP:GQ:MIN_DP:PL 0/0:50:99:40:0,104,1180 +20 10032413 . T G, 536.77 . BaseQRankSum=-2.742;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=180000,50;ReadPosRankSum=-0.111 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:565,0,554,634,631,1265:14,9,17,9 +20 10032414 . T . . END=10032599 GT:DP:GQ:MIN_DP:PL 0/0:54:99:42:0,120,1800 +20 10032600 . C . . END=10032600 GT:DP:GQ:MIN_DP:PL 0/0:45:97:45:0,97,1324 +20 10032601 . C . . END=10032646 GT:DP:GQ:MIN_DP:PL 0/0:47:99:44:0,104,1291 +20 10032647 . G . . END=10032647 GT:DP:GQ:MIN_DP:PL 0/0:46:82:46:0,82,1238 +20 10032648 . G . . END=10032824 GT:DP:GQ:MIN_DP:PL 0/0:48:99:35:0,99,1056 +20 10032825 . C . . END=10032825 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1066 +20 10032826 . A . . END=10032829 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,104,1203 +20 10032830 . C . . END=10032830 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,1097 +20 10032831 . T . . END=10032881 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,99,1172 +20 10032882 . A T, 1277.77 . BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=-0.460 GT:AD:DP:GQ:PL:SB 1/1:1,41,0:42:93:1306,93,0,1309,123,1340:1,0,21,20 +20 10032883 . A . . END=10032923 GT:DP:GQ:MIN_DP:PL 0/0:49:99:44:0,102,1380 +20 10032924 . G . . END=10032924 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1395 +20 10032925 . G . . END=10032925 GT:DP:GQ:MIN_DP:PL 0/0:48:84:48:0,84,1260 +20 10032926 . A . . END=10032926 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1125 +20 10032927 . T . . END=10032940 GT:DP:GQ:MIN_DP:PL 0/0:46:60:44:0,60,900 +20 10032941 . T . . END=10032943 GT:DP:GQ:MIN_DP:PL 0/0:44:57:44:0,57,855 +20 10032944 . G . . END=10032945 GT:DP:GQ:MIN_DP:PL 0/0:44:54:44:0,54,810 +20 10032946 . G . . END=10032946 GT:DP:GQ:MIN_DP:PL 0/0:44:51:44:0,51,765 +20 10032947 . G . . END=10032948 GT:DP:GQ:MIN_DP:PL 0/0:45:48:45:0,48,720 +20 10032949 . C . . END=10032949 GT:DP:GQ:MIN_DP:PL 0/0:45:45:45:0,45,675 +20 10032950 . T . . END=10032951 GT:DP:GQ:MIN_DP:PL 0/0:46:39:46:0,39,585 +20 10032952 . G . . END=10032952 GT:DP:GQ:MIN_DP:PL 0/0:45:36:45:0,36,540 +20 10032953 . C . . END=10032954 GT:DP:GQ:MIN_DP:PL 0/0:46:30:45:0,30,450 +20 10032955 . C . . END=10032955 GT:DP:GQ:MIN_DP:PL 0/0:44:27:44:0,27,405 +20 10032956 . C . . END=10032956 GT:DP:GQ:MIN_DP:PL 0/0:45:21:45:0,21,315 +20 10032957 . A . . END=10032957 GT:DP:GQ:MIN_DP:PL 0/0:45:18:45:0,18,270 +20 10032958 . G . . END=10032958 GT:DP:GQ:MIN_DP:PL 0/0:45:15:45:0,15,225 +20 10032959 . T . . END=10032961 GT:DP:GQ:MIN_DP:PL 0/0:45:12:45:0,12,180 +20 10032962 . G . . END=10032962 GT:DP:GQ:MIN_DP:PL 0/0:46:6:46:0,6,90 +20 10032963 . C . . END=10032971 GT:DP:GQ:MIN_DP:PL 0/0:45:0:44:0,0,0 +20 10032972 . C CAT, 1906.73 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=159700,44 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1944,132,0,1944,132,1944:0,0,21,22 +20 10032973 . T . . END=10032973 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,0 +20 10032974 . G . . END=10032974 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1179 +20 10032975 . A . . END=10033031 GT:DP:GQ:MIN_DP:PL 0/0:42:99:36:0,99,1093 +20 10033032 . G . . END=10033032 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,932 +20 10033033 . G . . END=10033033 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,995 +20 10033034 . T . . END=10033034 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10033035 . T . . END=10033036 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20 10033037 . C . . END=10033037 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1018 +20 10033038 . T . . END=10033045 GT:DP:GQ:MIN_DP:PL 0/0:37:90:33:0,90,1350 +20 10033046 . C . . END=10033047 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,966 +20 10033048 . G . . END=10033048 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10033049 . G . . END=10033049 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,952 +20 10033050 . A . . END=10033050 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10033051 . C . . END=10033051 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,1032 +20 10033052 . A . . END=10033052 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10033053 . A . . END=10033053 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10033054 . A . . END=10033054 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1108 +20 10033055 . G . . END=10033055 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1073 +20 10033056 . C . . END=10033056 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1053 +20 10033057 . A . . END=10033058 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10033059 . T . . END=10033059 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1047 +20 10033060 . T . . END=10033060 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1021 +20 10033061 . C . . END=10033061 GT:DP:GQ:MIN_DP:PL 0/0:38:70:38:0,70,1080 +20 10033062 . C . . END=10033063 GT:DP:GQ:MIN_DP:PL 0/0:37:92:36:0,92,1078 +20 10033064 . G . . END=10033064 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1021 +20 10033065 . A . . END=10033065 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10033066 . A . . END=10033066 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1098 +20 10033067 . T . . END=10033072 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1162 +20 10033073 . C . . END=10033073 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1128 +20 10033074 . T . . END=10033074 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,104,1212 +20 10033075 . T . . END=10033075 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1091 +20 10033076 . C . . END=10033077 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,100,1154 +20 10033078 . C . . END=10033078 GT:DP:GQ:MIN_DP:PL 0/0:42:86:42:0,86,1178 +20 10033079 . T . . END=10033084 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,103,1167 +20 10033085 . T . . END=10033085 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1170 +20 10033086 . A . . END=10033096 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,103,1170 +20 10033097 . A . . END=10033098 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1225 +20 10033099 . A . . END=10033105 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1160 +20 10033106 . A . . END=10033106 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1158 +20 10033107 . C . . END=10033341 GT:DP:GQ:MIN_DP:PL 0/0:47:99:37:0,99,1147 +20 10033342 . C . . END=10033342 GT:DP:GQ:MIN_DP:PL 0/0:47:93:47:0,93,1352 +20 10033343 . A . . END=10033473 GT:DP:GQ:MIN_DP:PL 0/0:54:99:45:0,120,1800 +20 10033474 . T . . END=10033474 GT:DP:GQ:MIN_DP:PL 0/0:46:91:46:0,91,1294 +20 10033475 . G . . END=10033513 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,100,1071 +20 10033514 . T . . END=10033515 GT:DP:GQ:MIN_DP:PL 0/0:40:84:40:0,84,1175 +20 10033516 . A . . END=10033558 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,105,1172 +20 10033559 . C . . END=10033559 GT:DP:GQ:MIN_DP:PL 0/0:41:73:41:0,73,1177 +20 10033560 . T . . END=10033588 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,111,1187 +20 10033589 . C . . END=10033589 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1053 +20 10033590 . G . . END=10033621 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,107,1160 +20 10033622 . C . . END=10033622 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1106 +20 10033623 . T . . END=10033652 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,108,1126 +20 10033653 . C . . END=10033653 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1292 +20 10033654 . A . . END=10033675 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,106,1224 +20 10033676 . A . . END=10033676 GT:DP:GQ:MIN_DP:PL 0/0:41:77:41:0,77,1201 +20 10033677 . G . . END=10033854 GT:DP:GQ:MIN_DP:PL 0/0:49:99:39:0,99,1370 +20 10033855 . A . . END=10033855 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1350 +20 10033856 . A . . END=10033905 GT:DP:GQ:MIN_DP:PL 0/0:47:99:44:0,101,1273 +20 10033906 . G . . END=10033906 GT:DP:GQ:MIN_DP:PL 0/0:47:75:47:0,75,1252 +20 10033907 . A . . END=10034010 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,99,1178 +20 10034011 . T . . END=10034011 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1179 +20 10034012 . A . . END=10034013 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10034014 . A . . END=10034014 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10034015 . C . . END=10034021 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10034022 . G . . END=10034022 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1040 +20 10034023 . G . . END=10034039 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1040 +20 10034040 . G . . END=10034055 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 +20 10034056 . A . . END=10034056 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10034057 . T . . END=10034069 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10034070 . C . . END=10034070 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,979 +20 10034071 . T . . END=10034071 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10034072 . T . . END=10034072 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,990 +20 10034073 . T . . END=10034074 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10034075 . A . . END=10034075 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,977 +20 10034076 . A . . END=10034082 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,931 +20 10034083 . A . . END=10034083 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,926 +20 10034084 . T . . END=10034084 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10034085 . C . . END=10034085 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,941 +20 10034086 . T . . END=10034087 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10034088 . A . . END=10034088 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,991 +20 10034089 . T . . END=10034091 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10034092 . A . . END=10034095 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10034096 . C . . END=10034096 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,952 +20 10034097 . T . . END=10034102 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10034103 . C . . END=10034108 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10034109 . A . . END=10034109 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,894 +20 10034110 . G . . END=10034112 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10034113 . T . . END=10034114 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10034115 . A . . END=10034120 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1003 +20 10034121 . A . . END=10034122 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10034123 . T . . END=10034124 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10034125 . A . . END=10034128 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,971 +20 10034129 . C . . END=10034129 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,938 +20 10034130 . A . . END=10034131 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10034132 . A . . END=10034132 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1075 +20 10034133 . G . . END=10034135 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1055 +20 10034136 . A . . END=10034138 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10034139 . C . . END=10034139 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,943 +20 10034140 . C . . END=10034140 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,975 +20 10034141 . A . . END=10034141 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10034142 . T . . END=10034142 GT:DP:GQ:MIN_DP:PL 0/0:35:83:35:0,83,1046 +20 10034143 . A . . END=10034143 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10034144 . C . . END=10034144 GT:DP:GQ:MIN_DP:PL 0/0:35:57:35:0,57,936 +20 10034145 . A . . END=10034152 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1103 +20 10034153 . A . . END=10034153 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1090 +20 10034154 . A . . END=10034158 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1104 +20 10034159 . T . . END=10034159 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1032 +20 10034160 . T . . END=10034171 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1142 +20 10034172 . A . . END=10034172 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1073 +20 10034173 . A . . END=10034177 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10034178 . A . . END=10034178 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1083 +20 10034179 . A . . END=10034179 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10034180 . T . . END=10034180 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1100 +20 10034181 . G . . END=10034182 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10034183 . T . . END=10034183 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10034184 . G . . END=10034184 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10034185 . A . . END=10034190 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10034191 . A . . END=10034195 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +20 10034196 . C . . END=10034196 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,933 +20 10034197 . A . . END=10034197 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10034198 . A . . END=10034198 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10034199 . A . . END=10034199 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,925 +20 10034200 . A . . END=10034201 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10034202 . T . . END=10034202 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,920 +20 10034203 . G . . END=10034214 GT:DP:GQ:MIN_DP:PL 0/0:32:82:30:0,82,910 +20 10034215 . G . . END=10034215 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,872 +20 10034216 . T . . END=10034226 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,879 +20 10034227 . T . . END=10034227 GT:DP:GQ:MIN_DP:PL 0/0:31:59:31:0,59,873 +20 10034228 . C . . END=10034229 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,990 +20 10034230 . T . . END=10034230 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10034231 . G . . END=10034233 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,966 +20 10034234 . T . . END=10034234 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10034235 . T . . END=10034235 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1027 +20 10034236 . A . . END=10034238 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10034239 . C . . END=10034239 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,949 +20 10034240 . A . . END=10034244 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1001 +20 10034245 . T . . END=10034251 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1037 +20 10034252 . A . . END=10034256 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10034257 . C . . END=10034257 GT:DP:GQ:MIN_DP:PL 0/0:38:74:38:0,74,1044 +20 10034258 . C . . END=10034272 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1074 +20 10034273 . A . . END=10034273 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1114 +20 10034274 . T . . END=10034276 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1147 +20 10034277 . A . . END=10034277 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1079 +20 10034278 . C . . END=10034279 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10034280 . C . . END=10034280 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1134 +20 10034281 . T . . END=10034288 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1133 +20 10034289 . A . . END=10034293 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1112 +20 10034294 . A . . END=10034299 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1090 +20 10034300 . G . . END=10034300 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,953 +20 10034301 . C . . END=10034303 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1071 +20 10034304 . G . . END=10034304 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1077 +20 10034305 . A . . END=10034305 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1090 +20 10034306 . T C, 457.77 . BaseQRankSum=-0.220;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=111600,31;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB 0/1:11,19,0:30:99:486,0,219,519,275,794:5,6,14,5 +20 10034307 . T . . END=10034309 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,103,1113 +20 10034310 . T . . END=10034310 GT:DP:GQ:MIN_DP:PL 0/0:37:65:37:0,65,1032 +20 10034311 . C . . END=10034311 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1099 +20 10034312 . T . . END=10034341 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1142 +20 10034342 . C . . END=10034342 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1233 +20 10034343 . T . . END=10034356 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1201 +20 10034357 . A . . END=10034357 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1130 +20 10034358 . C . . END=10034399 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1127 +20 10034400 . A . . END=10034413 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1027 +20 10034414 . A . . END=10034414 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,978 +20 10034415 . T . . END=10034416 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10034417 . C . . END=10034417 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10034418 . T . . END=10034424 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,960 +20 10034425 . C T, 531.77 . BaseQRankSum=1.758;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=115200,32;ReadPosRankSum=-0.895 GT:AD:DP:GQ:PL:SB 0/1:10,22,0:32:99:560,0,175,590,241,830:3,7,12,10 +20 10034426 . G . . END=10034429 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10034430 . C . . END=10034435 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,906 +20 10034436 . T . . END=10034436 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10034437 . C . . END=10034438 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,920 +20 10034439 . C . . END=10034447 GT:DP:GQ:MIN_DP:PL 0/0:33:81:31:0,81,1215 +20 10034448 . C . . END=10034449 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10034450 . T . . END=10034453 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10034454 . A . . END=10034458 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10034459 . G . . END=10034486 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10034487 . C . . END=10034487 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1158 +20 10034488 . C . . END=10034506 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,105,1045 +20 10034507 . T . . END=10034507 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1233 +20 10034508 . A . . END=10034542 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1162 +20 10034543 . G . . END=10034543 GT:DP:GQ:MIN_DP:PL 0/0:39:62:39:0,62,1108 +20 10034544 . A . . END=10034615 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,99,1157 +20 10034616 . T . . END=10034616 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10034617 . A . . END=10034617 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1106 +20 10034618 . A . . END=10034622 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1124 +20 10034623 . G . . END=10034623 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10034624 . C . . END=10034627 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10034628 . A . . END=10034635 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10034636 . T . . END=10034645 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10034646 . T . . END=10034646 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10034647 . G . . END=10034647 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1067 +20 10034648 . G . . END=10034648 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1051 +20 10034649 . C . . END=10034667 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1140 +20 10034668 . G . . END=10034668 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1117 +20 10034669 . A . . END=10034692 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10034693 . T . . END=10034693 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1121 +20 10034694 . G . . END=10034710 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1032 +20 10034711 . C . . END=10034711 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,994 +20 10034712 . A . . END=10034712 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1063 +20 10034713 . T . . END=10034722 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1053 +20 10034723 . G . . END=10034724 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10034725 . A . . END=10034726 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10034727 . G . . END=10034727 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1045 +20 10034728 . T . . END=10034732 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1064 +20 10034733 . G . . END=10034733 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,994 +20 10034734 . G . . END=10034737 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10034738 . T . . END=10034738 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,810 +20 10034739 . A . . END=10034739 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10034740 . G . . END=10034740 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,955 +20 10034741 . A . . END=10034742 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10034743 . A . . END=10034743 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1111 +20 10034744 . G . . END=10034760 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1056 +20 10034761 . A . . END=10034761 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1110 +20 10034762 . C . . END=10034784 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1117 +20 10034785 . G . . END=10034785 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1091 +20 10034786 . A . . END=10034789 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10034790 . T . . END=10034791 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10034792 . T . . END=10034802 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1062 +20 10034803 . A . . END=10034803 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,1010 +20 10034804 . A . . END=10034807 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10034808 . T . . END=10034808 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1084 +20 10034809 . G . . END=10034813 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1033 +20 10034814 . A . . END=10034814 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1009 +20 10034815 . G . . END=10034816 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10034817 . A . . END=10034817 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1010 +20 10034818 . T . . END=10034825 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,986 +20 10034826 . C . . END=10034837 GT:DP:GQ:MIN_DP:PL 0/0:31:80:30:0,80,1008 +20 10034838 . C . . END=10034838 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10034839 . A . . END=10034848 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10034849 . T . . END=10034849 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10034850 . A . . END=10034850 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10034851 . G . . END=10034853 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10034854 . G . . END=10034854 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,920 +20 10034855 . G . . END=10034855 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10034856 . C . . END=10034856 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,901 +20 10034857 . C . . END=10034857 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,966 +20 10034858 . A . . END=10034868 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10034869 . A . . END=10034869 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1029 +20 10034870 . T . . END=10034873 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,950 +20 10034874 . T . . END=10034878 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,995 +20 10034879 . C . . END=10034879 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10034880 . A . . END=10034880 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1002 +20 10034881 . A . . END=10034889 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10034890 . G . . END=10034890 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,955 +20 10034891 . T . . END=10034891 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10034892 . G . . END=10034901 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20 10034902 . C . . END=10035153 GT:DP:GQ:MIN_DP:PL 0/0:46:99:37:0,99,1159 +20 10035154 . A . . END=10035154 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1186 +20 10035155 . A . . END=10035167 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,114,1187 +20 10035168 . A . . END=10035168 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1233 +20 10035169 . G . . END=10035179 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1184 +20 10035180 . T . . END=10035180 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1179 +20 10035181 . T . . END=10035181 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1156 +20 10035182 . C . . END=10035334 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1113 +20 10035335 . A . . END=10035335 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1255 +20 10035336 . T . . END=10035343 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,111,1326 +20 10035344 . G . . END=10035344 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1113 +20 10035345 . T . . END=10035384 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,99,1131 +20 10035385 . A . . END=10035385 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1096 +20 10035386 . G . . END=10035388 GT:DP:GQ:MIN_DP:PL 0/0:38:93:36:0,93,1395 +20 10035389 . T . . END=10035396 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10035397 . T . . END=10035410 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10035411 . G . . END=10035413 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10035414 . C . . END=10035417 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10035418 . T . . END=10035418 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10035419 . G . . END=10035423 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10035424 . C . . END=10035427 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10035428 . C . . END=10035428 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,921 +20 10035429 . G . . END=10035429 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,930 +20 10035430 . G . . END=10035430 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,987 +20 10035431 . C . . END=10035441 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1067 +20 10035442 . C . . END=10035442 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1113 +20 10035443 . T . . END=10035446 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1153 +20 10035447 . T . . END=10035447 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1127 +20 10035448 . A . . END=10035448 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10035449 . T . . END=10035452 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10035453 . T . . END=10035453 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10035454 . A . . END=10035454 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1174 +20 10035455 . T . . END=10035615 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,102,1178 +20 10035616 . G . . END=10035616 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1200 +20 10035617 . T . . END=10035703 GT:DP:GQ:MIN_DP:PL 0/0:50:99:44:0,107,1304 +20 10035704 . T . . END=10035704 GT:DP:GQ:MIN_DP:PL 0/0:51:90:51:0,90,1305 +20 10035705 . T . . END=10036428 GT:DP:GQ:MIN_DP:PL 0/0:50:99:40:0,100,1200 +20 10036429 . T . . END=10036429 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1280 +20 10036430 . C . . END=10036633 GT:DP:GQ:MIN_DP:PL 0/0:52:99:38:0,104,1156 +20 10036634 . T . . END=10036634 GT:DP:GQ:MIN_DP:PL 0/0:55:93:55:0,93,1592 +20 10036635 . T . . END=10036663 GT:DP:GQ:MIN_DP:PL 0/0:56:99:52:0,119,1634 +20 10036664 . C . . END=10036664 GT:DP:GQ:MIN_DP:PL 0/0:54:98:54:0,98,1553 +20 10036665 . T . . END=10036875 GT:DP:GQ:MIN_DP:PL 0/0:53:99:39:0,99,1224 +20 10036876 . T . . END=10036876 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1184 +20 10036877 . A . . END=10036879 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10036880 . C . . END=10036880 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1099 +20 10036881 . T . . END=10036881 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10036882 . A . . END=10036889 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10036890 . T . . END=10036890 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1162 +20 10036891 . A . . END=10036896 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10036897 . C . . END=10036899 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10036900 . G . . END=10036910 GT:DP:GQ:MIN_DP:PL 0/0:34:81:29:0,81,1215 +20 10036911 . A . . END=10036911 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,862 +20 10036912 . C . . END=10036913 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10036914 . T . . END=10036914 GT:DP:GQ:MIN_DP:PL 0/0:29:59:29:0,59,842 +20 10036915 . T . . END=10036925 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +20 10036926 . A . . END=10036926 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10036927 . G . . END=10036929 GT:DP:GQ:MIN_DP:PL 0/0:29:78:27:0,78,1170 +20 10036930 . CGATAGCCCTAGCCCTAGATA C, 449.73 . BaseQRankSum=-0.709;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=129600,36;ReadPosRankSum=-0.254 GT:AD:DP:GQ:PL:SB 0/1:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036951 . G . . END=10036951 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,569 +20 10036952 . A . . END=10036956 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1059 +20 10036957 . C . . END=10036957 GT:DP:GQ:MIN_DP:PL 0/0:35:37:35:0,37,931 +20 10036958 . C . . END=10036958 GT:DP:GQ:MIN_DP:PL 0/0:35:39:35:0,39,926 +20 10036959 . T . . END=10036959 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1126 +20 10036960 . A . . END=10036960 GT:DP:GQ:MIN_DP:PL 0/0:36:41:36:0,41,1033 +20 10036961 . G . . END=10036961 GT:DP:GQ:MIN_DP:PL 0/0:33:34:33:0,34,944 +20 10036962 . C . . END=10036962 GT:DP:GQ:MIN_DP:PL 0/0:35:40:35:0,40,990 +20 10036963 . C . . END=10036963 GT:DP:GQ:MIN_DP:PL 0/0:36:44:36:0,44,951 +20 10036964 . C . . END=10036964 GT:DP:GQ:MIN_DP:PL 0/0:36:43:36:0,43,1033 +20 10036965 . T . . END=10036965 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10036966 . A . . END=10036966 GT:DP:GQ:MIN_DP:PL 0/0:36:42:36:0,42,1044 +20 10036967 . G . . END=10036967 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10036968 . A . . END=10036969 GT:DP:GQ:MIN_DP:PL 0/0:35:36:35:0,36,944 +20 10036970 . A . . END=10036970 GT:DP:GQ:MIN_DP:PL 0/0:35:38:35:0,38,991 +20 10036971 . G . . END=10036971 GT:DP:GQ:MIN_DP:PL 0/0:34:35:34:0,35,958 +20 10036972 . A . . END=10036972 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10036973 . T . . END=10036973 GT:DP:GQ:MIN_DP:PL 0/0:34:37:34:0,37,982 +20 10036974 . A . . END=10036990 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,901 +20 10036991 . A . . END=10036997 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1163 +20 10036998 . A . . END=10036998 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1068 +20 10036999 . T . . END=10037011 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1575 +20 10037012 . C . . END=10037012 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1111 +20 10037013 . A . . END=10037021 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1222 +20 10037022 . A . . END=10037022 GT:DP:GQ:MIN_DP:PL 0/0:39:61:39:0,61,1130 +20 10037023 . A . . END=10037023 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10037024 . T . . END=10037024 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10037025 . T . . END=10037025 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1220 +20 10037026 . G . . END=10037026 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10037027 . C . . END=10037027 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1204 +20 10037028 . A . . END=10037029 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10037030 . C . . END=10037030 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1133 +20 10037031 . A . . END=10037035 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10037036 . C . . END=10037036 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1104 +20 10037037 . C . . END=10037051 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10037052 . T . . END=10037054 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1000 +20 10037055 . A . . END=10037055 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10037056 . A . . END=10037056 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1030 +20 10037057 . C . . END=10037057 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,966 +20 10037058 . C . . END=10037058 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10037059 . T . . END=10037060 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10037061 . A . . END=10037072 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1080 +20 10037073 . C . . END=10037073 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10037074 . T . . END=10037076 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1485 +20 10037077 . C . . END=10037088 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1072 +20 10037089 . G . . END=10037090 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +20 10037091 . A . . END=10037094 GT:DP:GQ:MIN_DP:PL 0/0:37:75:36:0,75,1125 +20 10037095 . A . . END=10037100 GT:DP:GQ:MIN_DP:PL 0/0:38:60:35:0,60,900 +20 10037101 . A . . END=10037102 GT:DP:GQ:MIN_DP:PL 0/0:39:51:39:0,51,765 +20 10037103 . A . . END=10037103 GT:DP:GQ:MIN_DP:PL 0/0:40:48:40:0,48,720 +20 10037104 . T . . END=10037104 GT:DP:GQ:MIN_DP:PL 0/0:38:39:38:0,39,931 +20 10037105 . A . . END=10037106 GT:DP:GQ:MIN_DP:PL 0/0:39:42:38:0,42,630 +20 10037107 . A . . END=10037107 GT:DP:GQ:MIN_DP:PL 0/0:38:45:38:0,45,675 +20 10037108 . G . . END=10037109 GT:DP:GQ:MIN_DP:PL 0/0:39:33:38:0,33,495 +20 10037110 . T TGATA, 1653.73 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=131200,37 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1691,114,0,1691,114,1691:0,0,19,17 +20 10037111 . G . . END=10037111 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,0 +20 10037112 . A . . END=10037113 GT:DP:GQ:MIN_DP:PL 0/0:43:54:43:0,54,810 +20 10037114 . A . . END=10037116 GT:DP:GQ:MIN_DP:PL 0/0:45:57:44:0,57,855 +20 10037117 . T . . END=10037124 GT:DP:GQ:MIN_DP:PL 0/0:45:60:42:0,60,900 +20 10037125 . T . . END=10037125 GT:DP:GQ:MIN_DP:PL 0/0:44:54:44:0,54,810 +20 10037126 . G . . END=10037135 GT:DP:GQ:MIN_DP:PL 0/0:48:33:45:0,33,495 +20 10037136 . T . . END=10037137 GT:DP:GQ:MIN_DP:PL 0/0:47:27:47:0,27,405 +20 10037138 . G . . END=10037141 GT:DP:GQ:MIN_DP:PL 0/0:46:21:42:0,21,315 +20 10037142 . G . . END=10037142 GT:DP:GQ:MIN_DP:PL 0/0:42:18:42:0,18,270 +20 10037143 . A . . END=10037143 GT:DP:GQ:MIN_DP:PL 0/0:41:15:41:0,15,225 +20 10037144 . TGATA T,TGATAGATA, 1180.73 . DP=40;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=142000,40 GT:AD:DP:GQ:PL:SB 1/2:0,18,11,0:29:99:1218,461,407,756,0,724,1218,462,757,1218:0,0,13,16 +20 10037149 . G . . END=10037149 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,113 +20 10037150 . A . . END=10037154 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1060 +20 10037155 . T . . END=10037155 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1049 +20 10037156 . A . . END=10037159 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10037160 . A . . END=10037165 GT:DP:GQ:MIN_DP:PL 0/0:38:90:36:0,90,1350 +20 10037166 . A . . END=10037166 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1083 +20 10037167 . T . . END=10037177 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10037178 . A . . END=10037178 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1070 +20 10037179 . T . . END=10037179 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1065 +20 10037180 . A . . END=10037181 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10037182 . A . . END=10037182 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10037183 . T . . END=10037183 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1024 +20 10037184 . A . . END=10037184 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10037185 . G . . END=10037186 GT:DP:GQ:MIN_DP:PL 0/0:37:74:36:0,74,1017 +20 10037187 . G . . END=10037188 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10037189 . T . . END=10037189 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1114 +20 10037190 . T . . END=10037195 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10037196 . C . . END=10037196 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1098 +20 10037197 . A . . END=10037222 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1208 +20 10037223 . C . . END=10037223 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1043 +20 10037224 . C . . END=10037224 GT:DP:GQ:MIN_DP:PL 0/0:38:68:38:0,68,994 +20 10037225 . C . . END=10037225 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1049 +20 10037226 . C . . END=10037245 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,106,1081 +20 10037246 . T . . END=10037246 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1200 +20 10037247 . T . . END=10037251 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10037252 . G . . END=10037252 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1062 +20 10037253 . G . . END=10037294 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,109,1136 +20 10037295 . T . . END=10037295 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1152 +20 10037296 . C . . END=10037421 GT:DP:GQ:MIN_DP:PL 0/0:44:99:36:0,103,1035 +20 10037422 . T . . END=10037423 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1045 +20 10037424 . A . . END=10037429 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10037430 . T . . END=10037430 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1044 +20 10037431 . C . . END=10037446 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1157 +20 10037447 . G . . END=10037447 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,892 +20 10037448 . A . . END=10037452 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,999 +20 10037453 . T . . END=10037455 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10037456 . G . . END=10037456 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1083 +20 10037457 . A . . END=10037461 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1082 +20 10037462 . T . . END=10037462 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1019 +20 10037463 . T . . END=10037485 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,997 +20 10037486 . T . . END=10037486 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1050 +20 10037487 . C . . END=10037510 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1167 +20 10037511 . T . . END=10037511 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1245 +20 10037512 . G . . END=10037527 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,105,1162 +20 10037528 . T . . END=10037528 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1210 +20 10037529 . G . . END=10037588 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,104,1170 +20 10037589 . C . . END=10037589 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1108 +20 10037590 . A . . END=10037603 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1575 +20 10037604 . G . . END=10037604 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1063 +20 10037605 . A . . END=10037636 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1164 +20 10037637 . T . . END=10037637 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1081 +20 10037638 . C . . END=10037639 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10037640 . G . . END=10037647 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10037648 . A . . END=10037649 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 +20 10037650 . G . . END=10037650 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +20 10037651 . C . . END=10037652 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20 10037653 . A . . END=10037653 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 +20 10037654 . G . . END=10037660 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10037661 . C . . END=10037663 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10037664 . T . . END=10037666 GT:DP:GQ:MIN_DP:PL 0/0:32:81:28:0,81,1215 +20 10037667 . T . . END=10037667 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,902 +20 10037668 . C . . END=10037676 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10037677 . A . . END=10037678 GT:DP:GQ:MIN_DP:PL 0/0:29:64:28:0,64,806 +20 10037679 . A . . END=10037679 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,902 +20 10037680 . T . . END=10037688 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,887 +20 10037689 . T . . END=10037690 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,924 +20 10037691 . C . . END=10037691 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,907 +20 10037692 . C . . END=10037695 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,846 +20 10037696 . C . . END=10037699 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,982 +20 10037700 . A . . END=10037703 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,993 +20 10037704 . C . . END=10037704 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1033 +20 10037705 . C . . END=10037708 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1162 +20 10037709 . A T, 431.77 . BaseQRankSum=0.120;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=126000,35;ReadPosRankSum=1.150 GT:AD:DP:GQ:PL:SB 0/1:17,18,0:35:99:460,0,435,511,489,1000:6,11,4,14 +20 10037710 . A . . END=10037717 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1131 +20 10037718 . C . . END=10037718 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1024 +20 10037719 . G . . END=10037739 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1191 +20 10037740 . C A, 0 . BaseQRankSum=-2.504;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=129600,36;ReadPosRankSum=0.545 GT:AD:DP:GQ:PL:SB 0/0:34,2,0:36:88:0,88,1080,102,1085,1099:15,19,2,0 +20 10037741 . A . . END=10037948 GT:DP:GQ:MIN_DP:PL 0/0:46:99:34:0,99,1115 +20 10037949 . G . . END=10037949 GT:DP:GQ:MIN_DP:PL 0/0:50:95:50:0,95,1374 +20 10037950 . G . . END=10037992 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,100,1203 +20 10037993 . A . . END=10037993 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1159 +20 10037994 . C . . END=10038068 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1156 +20 10038069 . T . . END=10038069 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1157 +20 10038070 . T . . END=10038070 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10038071 . C . . END=10038083 GT:DP:GQ:MIN_DP:PL 0/0:37:90:33:0,90,1010 +20 10038084 . A . . END=10038145 GT:DP:GQ:MIN_DP:PL 0/0:40:99:33:0,99,1003 +20 10038146 . C . . END=10038146 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1115 +20 10038147 . C . . END=10038165 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,106,1137 +20 10038166 . A . . END=10038166 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1209 +20 10038167 . T . . END=10038187 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,102,1332 +20 10038188 . A . . END=10038188 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1228 +20 10038189 . T . . END=10038210 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1181 +20 10038211 . G . . END=10038211 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1142 +20 10038212 . T . . END=10038216 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1144 +20 10038217 . G . . END=10038217 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1001 +20 10038218 . A . . END=10038237 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,963 +20 10038238 . A . . END=10038238 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1117 +20 10038239 . A . . END=10038241 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10038242 . C . . END=10038244 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10038245 . G . . END=10038249 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10038250 . A . . END=10038253 GT:DP:GQ:MIN_DP:PL 0/0:36:94:34:0,94,1079 +20 10038254 . A . . END=10038254 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10038255 . T . . END=10038255 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1085 +20 10038256 . G . . END=10038264 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1058 +20 10038265 . C . . END=10038265 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1073 +20 10038266 . A . . END=10038273 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1160 +20 10038274 . T . . END=10038274 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1111 +20 10038275 . T . . END=10038275 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10038276 . T . . END=10038276 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1147 +20 10038277 . T . . END=10038287 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10038288 . T . . END=10038288 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1047 +20 10038289 . G . . END=10038289 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1016 +20 10038290 . T . . END=10038292 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1059 +20 10038293 . G . . END=10038293 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,934 +20 10038294 . T . . END=10038298 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10038299 . G . . END=10038299 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,992 +20 10038300 . A . . END=10038300 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10038301 . C . . END=10038304 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10038305 . A . . END=10038305 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,909 +20 10038306 . T . . END=10038306 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10038307 . G . . END=10038308 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20 10038309 . T . . END=10038314 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10038315 . T . . END=10038316 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10038317 . T . . END=10038317 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1071 +20 10038318 . T . . END=10038326 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10038327 . T . . END=10038327 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,982 +20 10038328 . A . . END=10038341 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,946 +20 10038342 . C . . END=10038344 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,761 +20 10038345 . T . . END=10038345 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10038346 . G . . END=10038346 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,850 +20 10038347 . T . . END=10038348 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10038349 . C . . END=10038349 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,902 +20 10038350 . T . . END=10038355 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10038356 . A . . END=10038360 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10038361 . A . . END=10038367 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1035 +20 10038368 . C . . END=10038369 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,942 +20 10038370 . A . . END=10038370 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10038371 . T . . END=10038371 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1028 +20 10038372 . T . . END=10038372 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10038373 . G . . END=10038373 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,913 +20 10038374 . G . . END=10038374 GT:DP:GQ:MIN_DP:PL 0/0:33:61:33:0,61,918 +20 10038375 . C . . END=10038379 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1038 +20 10038380 . T . . END=10038381 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10038382 . A . . END=10038382 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1048 +20 10038383 . G . . END=10038384 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10038385 . A . . END=10038388 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10038389 . T . . END=10038389 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1094 +20 10038390 . A . . END=10038390 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1051 +20 10038391 . A . . END=10038400 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,104,1056 +20 10038401 . G . . END=10038401 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1126 +20 10038402 . A . . END=10038407 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,114,1710 +20 10038408 . T . . END=10038408 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1280 +20 10038409 . T . . END=10038429 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1116 +20 10038430 . A . . END=10038430 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1122 +20 10038431 . T . . END=10038437 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1181 +20 10038438 . A . . END=10038438 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1195 +20 10038439 . T . . END=10038524 GT:DP:GQ:MIN_DP:PL 0/0:53:99:41:0,99,1277 +20 10038525 . C . . END=10038525 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1440 +20 10038526 . C . . END=10038526 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,99,1485 +20 10038527 . T . . END=10038533 GT:DP:GQ:MIN_DP:PL 0/0:60:90:60:0,90,1350 +20 10038534 . CTTGT C, 976.73 . BaseQRankSum=-1.936;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.962;RAW_MQandDP=213700,59;ReadPosRankSum=0.880 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038539 . T . . END=10038539 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,101 +20 10038540 . T . . END=10038639 GT:DP:GQ:MIN_DP:PL 0/0:50:99:44:0,114,1304 +20 10038640 . A C, 550.77 . BaseQRankSum=-0.163;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=162000,45;ReadPosRankSum=0.213 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:579,0,582,648,648,1296:9,14,18,4 +20 10038641 . A . . END=10038835 GT:DP:GQ:MIN_DP:PL 0/0:55:99:38:0,99,1194 +20 10038836 . A . . END=10038836 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1234 +20 10038837 . C . . END=10038849 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,111,1297 +20 10038850 . A . . END=10038850 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1268 +20 10038851 . T . . END=10038851 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,117,1755 +20 10038852 . A . . END=10038852 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1268 +20 10038853 . A . . END=10038853 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,109,1277 +20 10038854 . T . . END=10038854 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1272 +20 10038855 . T . . END=10038857 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,106,1260 +20 10038858 . A . . END=10038858 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1212 +20 10038859 . T . . END=10038859 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +20 10038860 . A . . END=10038860 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1251 +20 10038861 . G . . END=10038863 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10038864 . A . . END=10038864 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1102 +20 10038865 . C . . END=10038865 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1195 +20 10038866 . C . . END=10038866 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1140 +20 10038867 . T . . END=10038867 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20 10038868 . C . . END=10038868 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1113 +20 10038869 . C . . END=10038876 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1117 +20 10038877 . A . . END=10038877 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1073 +20 10038878 . T . . END=10038881 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1105 +20 10038882 . G . . END=10038882 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1005 +20 10038883 . T . . END=10038890 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10038891 . A . . END=10038891 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1114 +20 10038892 . A . . END=10038901 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1144 +20 10038902 . T . . END=10038922 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,961 +20 10038923 . C . . END=10038923 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,940 +20 10038924 . A . . END=10038925 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,999 +20 10038926 . A . . END=10038926 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10038927 . A . . END=10038930 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10038931 . C . . END=10038936 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1083 +20 10038937 . T . . END=10038937 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1000 +20 10038938 . T . . END=10038982 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,99,1019 +20 10038983 . C . . END=10038983 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,973 +20 10038984 . T . . END=10038993 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10038994 . C T, 495.77 . BaseQRankSum=2.963;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=-0.235 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:524,0,452,581,509,1090:14,5,9,10 +20 10038995 . A . . END=10039370 GT:DP:GQ:MIN_DP:PL 0/0:52:99:38:0,100,1150 +20 10039371 . T G, 382.77 . BaseQRankSum=-1.667;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=162000,45;ReadPosRankSum=-1.605 GT:AD:DP:GQ:PL:SB 0/1:28,17,0:45:99:411,0,777,495,828,1324:10,18,9,8 +20 10039372 . T . . END=10039503 GT:DP:GQ:MIN_DP:PL 0/0:48:99:43:0,107,1307 +20 10039504 . C . . END=10039504 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1239 +20 10039505 . A . . END=10039707 GT:DP:GQ:MIN_DP:PL 0/0:49:99:39:0,102,1236 +20 10039708 . T . . END=10039708 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1304 +20 10039709 . A . . END=10039832 GT:DP:GQ:MIN_DP:PL 0/0:49:99:41:0,104,1340 +20 10039833 . G . . END=10039833 GT:DP:GQ:MIN_DP:PL 0/0:53:97:53:0,97,1404 +20 10039834 . T . . END=10040087 GT:DP:GQ:MIN_DP:PL 0/0:50:99:40:0,100,1242 +20 10040088 . A . . END=10040088 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1393 +20 10040089 . T . . END=10040420 GT:DP:GQ:MIN_DP:PL 0/0:53:99:43:0,100,1261 +20 10040421 . A . . END=10040421 GT:DP:GQ:MIN_DP:PL 0/0:44:74:44:0,74,1237 +20 10040422 . A . . END=10040436 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1485 +20 10040437 . C . . END=10040437 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1200 +20 10040438 . A . . END=10040439 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1530 +20 10040440 . T . . END=10040440 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1162 +20 10040441 . T . . END=10040442 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 +20 10040443 . T . . END=10040443 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1121 +20 10040444 . A . . END=10040484 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,100,1044 +20 10040485 . T . . END=10040486 GT:DP:GQ:MIN_DP:PL 0/0:42:95:41:0,95,1232 +20 10040487 . C . . END=10040512 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1245 +20 10040513 . T . . END=10040513 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1240 +20 10040514 . T . . END=10040537 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1109 +20 10040538 . A . . END=10040538 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1161 +20 10040539 . T . . END=10040564 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1047 +20 10040565 . T . . END=10040565 GT:DP:GQ:MIN_DP:PL 0/0:41:86:41:0,86,1192 +20 10040566 . A . . END=10040566 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20 10040567 . A . . END=10040567 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1208 +20 10040568 . C . . END=10040578 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,99,1029 +20 10040579 . T . . END=10040579 GT:DP:GQ:MIN_DP:PL 0/0:46:95:46:0,95,1300 +20 10040580 . A . . END=10040634 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,111,1303 +20 10040635 . A . . END=10040635 GT:DP:GQ:MIN_DP:PL 0/0:45:87:45:0,87,1333 +20 10040636 . T . . END=10040647 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,119,1332 +20 10040648 . T . . END=10040648 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1294 +20 10040649 . A . . END=10040666 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,104,1286 +20 10040667 . G . . END=10040667 GT:DP:GQ:MIN_DP:PL 0/0:48:86:48:0,86,1339 +20 10040668 . C . . END=10040726 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,99,1271 +20 10040727 . G . . END=10040727 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1185 +20 10040728 . T . . END=10040735 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,99,1485 +20 10040736 . T . . END=10040739 GT:DP:GQ:MIN_DP:PL 0/0:39:90:36:0,90,1350 +20 10040740 . T . . END=10040742 GT:DP:GQ:MIN_DP:PL 0/0:41:84:40:0,84,1260 +20 10040743 . C . . END=10040743 GT:DP:GQ:MIN_DP:PL 0/0:43:78:43:0,78,1170 +20 10040744 . C . . END=10040762 GT:DP:GQ:MIN_DP:PL 0/0:42:60:36:0,60,900 +20 10040763 . T . . END=10040767 GT:DP:GQ:MIN_DP:PL 0/0:39:57:38:0,57,855 +20 10040768 . T . . END=10040771 GT:DP:GQ:MIN_DP:PL 0/0:40:54:39:0,54,810 +20 10040772 . C CTT, 602.73 . BaseQRankSum=0.374;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=-0.427 GT:AD:DP:GQ:PL:SB 0/1:17,20,0:37:99:640,0,563,692,626,1318:7,10,10,10 +20 10040773 . T . . END=10040773 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,240 +20 10040774 . T . . END=10040778 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1305 +20 10040779 . T . . END=10040780 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1350 +20 10040781 . A . . END=10040781 GT:DP:GQ:MIN_DP:PL 0/0:42:10:42:0,10,1085 +20 10040782 . C . . END=10040782 GT:DP:GQ:MIN_DP:PL 0/0:39:28:39:0,28,1031 +20 10040783 . A . . END=10040783 GT:DP:GQ:MIN_DP:PL 0/0:42:77:42:0,77,1191 +20 10040784 . A . . END=10040784 GT:DP:GQ:MIN_DP:PL 0/0:40:68:40:0,68,1127 +20 10040785 . T . . END=10040792 GT:DP:GQ:MIN_DP:PL 0/0:41:81:39:0,81,1215 +20 10040793 . T . . END=10040798 GT:DP:GQ:MIN_DP:PL 0/0:41:72:38:0,72,1080 +20 10040799 . T . . END=10040805 GT:DP:GQ:MIN_DP:PL 0/0:40:66:38:0,66,990 +20 10040806 . T . . END=10040810 GT:DP:GQ:MIN_DP:PL 0/0:39:57:38:0,57,855 +20 10040811 . A . . END=10040811 GT:DP:GQ:MIN_DP:PL 0/0:41:60:41:0,60,900 +20 10040812 . AT A, 329.73 . BaseQRankSum=0.905;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=0.031 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040814 . T . . END=10040814 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,275 +20 10040815 . T . . END=10040820 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10040821 . T C, 0 . BaseQRankSum=-0.879;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=-0.347 GT:AD:DP:GQ:PL:SB 0/0:39,1,0:40:90:0,90,1292,117,1295,1322:17,22,0,1 +20 10040822 . A . . END=10040945 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,108,1209 +20 10040946 . T . . END=10040946 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1140 +20 10040947 . T . . END=10040964 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1193 +20 10040965 . T . . END=10040965 GT:DP:GQ:MIN_DP:PL 0/0:42:86:42:0,86,1184 +20 10040966 . G . . END=10040999 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,105,1162 +20 10041000 . T . . END=10041000 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,978 +20 10041001 . G . . END=10041001 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,116,1109 +20 10041002 . A . . END=10041002 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1076 +20 10041003 . G . . END=10041133 GT:DP:GQ:MIN_DP:PL 0/0:41:99:34:0,99,1068 +20 10041134 . T . . END=10041134 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1086 +20 10041135 . C . . END=10041137 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10041138 . T . . END=10041138 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1098 +20 10041139 . G . . END=10041201 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,101,1028 +20 10041202 . A . . END=10041202 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1268 +20 10041203 . A . . END=10041213 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,103,1102 +20 10041214 . G . . END=10041214 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1136 +20 10041215 . G . . END=10041244 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,100,1099 +20 10041245 . G . . END=10041245 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1224 +20 10041246 . T . . END=10041246 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,118,1316 +20 10041247 . A . . END=10041247 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1191 +20 10041248 . A . . END=10041278 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,101,1215 +20 10041279 . T . . END=10041279 GT:DP:GQ:MIN_DP:PL 0/0:46:91:46:0,91,1306 +20 10041280 . G . . END=10041283 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,106,1272 +20 10041284 . T . . END=10041284 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1249 +20 10041285 . T . . END=10041289 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,108,1620 +20 10041290 . T . . END=10041290 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1138 +20 10041291 . T . . END=10041292 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +20 10041293 . A . . END=10041293 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1107 +20 10041294 . A . . END=10041303 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1530 +20 10041304 . C T, 362.77 . BaseQRankSum=3.219;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=122400,34;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL:SB 0/1:18,15,0:33:99:391,0,405,445,450,895:8,10,7,8 +20 10041305 . G . . END=10041308 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,109,1141 +20 10041309 . A . . END=10041309 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1146 +20 10041310 . A . . END=10041311 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10041312 . T . . END=10041312 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1109 +20 10041313 . G . . END=10041317 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1165 +20 10041318 . A . . END=10041318 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1136 +20 10041319 . G . . END=10041321 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10041322 . T . . END=10041324 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1121 +20 10041325 . G . . END=10041328 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1196 +20 10041329 . T . . END=10041329 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1177 +20 10041330 . T . . END=10041350 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1117 +20 10041351 . T . . END=10041351 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1109 +20 10041352 . G . . END=10041353 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1048 +20 10041354 . A . . END=10041354 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1085 +20 10041355 . T . . END=10041373 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1056 +20 10041374 . C . . END=10041374 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1029 +20 10041375 . T . . END=10041385 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1037 +20 10041386 . C . . END=10041386 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1064 +20 10041387 . C . . END=10041393 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1166 +20 10041394 . C . . END=10041394 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1077 +20 10041395 . C . . END=10041405 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1167 +20 10041406 . G . . END=10041407 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10041408 . T . . END=10041408 GT:DP:GQ:MIN_DP:PL 0/0:36:68:36:0,68,1006 +20 10041409 . A . . END=10041413 GT:DP:GQ:MIN_DP:PL 0/0:36:87:34:0,87,1305 +20 10041414 . G . . END=10041417 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,935 +20 10041418 . C . . END=10041418 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,935 +20 10041419 . A . . END=10041427 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,933 +20 10041428 . A . . END=10041428 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,927 +20 10041429 . A . . END=10041429 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,945 +20 10041430 . T . . END=10041431 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10041432 . T . . END=10041432 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1104 +20 10041433 . C . . END=10041433 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10041434 . A . . END=10041434 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1099 +20 10041435 . T . . END=10041435 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10041436 . C . . END=10041436 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1090 +20 10041437 . A . . END=10041443 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1141 +20 10041444 . A . . END=10041444 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10041445 . A . . END=10041449 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10041450 . G . . END=10041450 GT:DP:GQ:MIN_DP:PL 0/0:38:61:38:0,61,1101 +20 10041451 . G . . END=10041458 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1084 +20 10041459 . T . . END=10041459 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1111 +20 10041460 . A . . END=10041465 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1011 +20 10041466 . C . . END=10041467 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1098 +20 10041468 . C . . END=10041468 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10041469 . A . . END=10041473 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20 10041474 . A . . END=10041474 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1071 +20 10041475 . C . . END=10041488 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10041489 . T . . END=10041490 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1105 +20 10041491 . G . . END=10041497 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10041498 . A . . END=10041498 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1024 +20 10041499 . A . . END=10041504 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10041505 . T . . END=10041515 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10041516 . C . . END=10041516 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1049 +20 10041517 . A . . END=10041547 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,101,1051 +20 10041548 . A . . END=10041548 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1136 +20 10041549 . T . . END=10041574 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,102,1124 +20 10041575 . G . . END=10041575 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10041576 . T . . END=10041576 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1063 +20 10041577 . C . . END=10041577 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1073 +20 10041578 . T . . END=10041581 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10041582 . T . . END=10041582 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1173 +20 10041583 . C . . END=10041600 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1620 +20 10041601 . G . . END=10041601 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1196 +20 10041602 . A . . END=10041613 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10041614 . G . . END=10041614 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1125 +20 10041615 . G . . END=10041648 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1079 +20 10041649 . A . . END=10041649 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1098 +20 10041650 . A . . END=10041662 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10041663 . G . . END=10041675 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10041676 . C . . END=10041676 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10041677 . A . . END=10041685 GT:DP:GQ:MIN_DP:PL 0/0:33:72:32:0,72,1080 +20 10041686 . A . . END=10041692 GT:DP:GQ:MIN_DP:PL 0/0:31:60:30:0,60,900 +20 10041693 . T . . END=10041693 GT:DP:GQ:MIN_DP:PL 0/0:30:54:30:0,54,810 +20 10041694 . T . . END=10041695 GT:DP:GQ:MIN_DP:PL 0/0:30:48:29:0,48,720 +20 10041696 . A . . END=10041696 GT:DP:GQ:MIN_DP:PL 0/0:29:41:29:0,41,825 +20 10041697 . A . . END=10041697 GT:DP:GQ:MIN_DP:PL 0/0:29:42:29:0,42,630 +20 10041698 . C CAT, 0 . DP=26;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;RAW_MQandDP=96200,26 GT:AD:DP:GQ:PL:SB 0/0:23,0,0:23:69:0,69,825,69,825,825:12,11,0,0 +20 10041699 . A . . END=10041699 GT:DP:GQ:MIN_DP:PL 0/0:29:39:29:0,39,585 +20 10041700 . T . . END=10041700 GT:DP:GQ:MIN_DP:PL 0/0:28:36:28:0,36,540 +20 10041701 . A ATG,ATATG, 253.73 . BaseQRankSum=0.043;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00;MQRankSum=0.959;RAW_MQandDP=92600,25;ReadPosRankSum=1.116 GT:AD:DP:GQ:PL:SB 0/2:8,0,11,0:19:99:291,346,691,0,266,568,349,679,452,810:3,5,6,5 +20 10041702 . T . . END=10041702 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,182 +20 10041703 . G . . END=10041707 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +20 10041708 . T . . END=10041708 GT:DP:GQ:MIN_DP:PL 0/0:28:40:28:0,40,739 +20 10041709 . G . . END=10041710 GT:DP:GQ:MIN_DP:PL 0/0:29:73:28:0,73,834 +20 10041711 . G . . END=10041712 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10041713 . G . . END=10041713 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,870 +20 10041714 . T . . END=10041715 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10041716 . T . . END=10041716 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,839 +20 10041717 . G . . END=10041719 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10041720 . T . . END=10041730 GT:DP:GQ:MIN_DP:PL 0/0:32:72:28:0,72,1001 +20 10041731 . G . . END=10041731 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +20 10041732 . T . . END=10041739 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,823 +20 10041740 . C . . END=10041740 GT:DP:GQ:MIN_DP:PL 0/0:25:54:25:0,54,568 +20 10041741 . G . . END=10041741 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,724 +20 10041742 . T . . END=10041742 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,806 +20 10041743 . G . . END=10041743 GT:DP:GQ:MIN_DP:PL 0/0:26:58:26:0,58,766 +20 10041744 . T . . END=10041748 GT:DP:GQ:MIN_DP:PL 0/0:27:70:26:0,70,817 +20 10041749 . A . . END=10041749 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,807 +20 10041750 . T . . END=10041752 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +20 10041753 . A . . END=10041753 GT:DP:GQ:MIN_DP:PL 0/0:29:55:29:0,55,856 +20 10041754 . T . . END=10041761 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,871 +20 10041762 . T . . END=10041766 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,763 +20 10041767 . G . . END=10041767 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10041768 . A . . END=10041768 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,760 +20 10041769 . C . . END=10041780 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,727 +20 10041781 . G . . END=10041781 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,781 +20 10041782 . A . . END=10041784 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,806 +20 10041785 . G . . END=10041785 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,721 +20 10041786 . C . . END=10041793 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,850 +20 10041794 . T . . END=10041795 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20 10041796 . A . . END=10041796 GT:DP:GQ:MIN_DP:PL 0/0:28:58:28:0,58,815 +20 10041797 . T . . END=10041810 GT:DP:GQ:MIN_DP:PL 0/0:27:73:26:0,73,810 +20 10041811 . A . . END=10041811 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,794 +20 10041812 . A . . END=10041812 GT:DP:GQ:MIN_DP:PL 0/0:25:75:25:0,75,766 +20 10041813 . C . . END=10041815 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,842 +20 10041816 . C . . END=10041818 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20 10041819 . C . . END=10041821 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10041822 . C . . END=10041824 GT:DP:GQ:MIN_DP:PL 0/0:30:75:29:0,75,854 +20 10041825 . G . . END=10041825 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10041826 . G . . END=10041826 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,908 +20 10041827 . G . . END=10041833 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,893 +20 10041834 . A . . END=10041834 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,914 +20 10041835 . G . . END=10041837 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,917 +20 10041838 . T . . END=10041839 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,907 +20 10041840 . T . . END=10041845 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10041846 . C . . END=10041846 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,904 +20 10041847 . T . . END=10041849 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10041850 . G . . END=10041851 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10041852 . C . . END=10041853 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +20 10041854 . A . . END=10041854 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,913 +20 10041855 . C . . END=10041870 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,937 +20 10041871 . T . . END=10041871 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,912 +20 10041872 . T . . END=10041879 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,903 +20 10041880 . A . . END=10041882 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,924 +20 10041883 . G . . END=10041890 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,918 +20 10041891 . C . . END=10041896 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +20 10041897 . T . . END=10041901 GT:DP:GQ:MIN_DP:PL 0/0:27:66:25:0,66,780 +20 10041902 . A . . END=10041903 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10041904 . G . . END=10041904 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,796 +20 10041905 . C . . END=10041906 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20 10041907 . G . . END=10041907 GT:DP:GQ:MIN_DP:PL 0/0:26:56:26:0,56,754 +20 10041908 . G . . END=10041909 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,713 +20 10041910 . C . . END=10041914 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +20 10041915 . A . . END=10041915 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20 10041916 . C . . END=10041918 GT:DP:GQ:MIN_DP:PL 0/0:27:69:26:0,69,1035 +20 10041919 . C . . END=10041922 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +20 10041923 . C . . END=10041928 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,851 +20 10041929 . G . . END=10041929 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,911 +20 10041930 . T . . END=10041930 GT:DP:GQ:MIN_DP:PL 0/0:29:64:29:0,64,893 +20 10041931 . G . . END=10041931 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,897 +20 10041932 . A . . END=10041932 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,879 +20 10041933 . T . . END=10041935 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10041936 . T . . END=10041936 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,993 +20 10041937 . C . . END=10041937 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,930 +20 10041938 . C . . END=10041938 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10041939 . T . . END=10041939 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,981 +20 10041940 . G . . END=10041940 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10041941 . T . . END=10041942 GT:DP:GQ:MIN_DP:PL 0/0:31:70:31:0,70,914 +20 10041943 . T . . END=10041943 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10041944 . C . . END=10041945 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10041946 . G . . END=10041949 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10041950 . C . . END=10041950 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,930 +20 10041951 . C . . END=10041952 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,982 +20 10041953 . A . . END=10041953 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10041954 . A . . END=10041958 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1041 +20 10041959 . C . . END=10041959 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,960 +20 10041960 . T . . END=10041962 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10041963 . G . . END=10041964 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1033 +20 10041965 . T . . END=10041965 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1025 +20 10041966 . T . . END=10041966 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10041967 . A . . END=10041968 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,943 +20 10041969 . A . . END=10041970 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1059 +20 10041971 . G . . END=10041976 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10041977 . G . . END=10041977 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1044 +20 10041978 . C . . END=10041981 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1104 +20 10041982 . C . . END=10041982 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,968 +20 10041983 . G . . END=10041986 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,1007 +20 10041987 . C . . END=10041987 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1072 +20 10041988 . T . . END=10041988 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10041989 . G . . END=10041989 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1097 +20 10041990 . G . . END=10041992 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,1095 +20 10041993 . C . . END=10041993 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1023 +20 10041994 . T . . END=10041997 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10041998 . C . . END=10041998 GT:DP:GQ:MIN_DP:PL 0/0:39:79:39:0,79,1123 +20 10041999 . A . . END=10042006 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1164 +20 10042007 . A . . END=10042007 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1163 +20 10042008 . T . . END=10042008 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20 10042009 . T . . END=10042009 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1154 +20 10042010 . T . . END=10042147 GT:DP:GQ:MIN_DP:PL 0/0:48:99:39:0,105,1263 +20 10042148 . T . . END=10042148 GT:DP:GQ:MIN_DP:PL 0/0:49:73:49:0,73,1442 +20 10042149 . A . . END=10042174 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,120,1800 +20 10042175 . G . . END=10042175 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1419 +20 10042176 . A . . END=10042282 GT:DP:GQ:MIN_DP:PL 0/0:51:99:42:0,108,1271 +20 10042283 . C . . END=10042284 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1159 +20 10042285 . G . . END=10042318 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,114,1290 +20 10042319 . C T, 534.77 . BaseQRankSum=1.658;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=151200,42;ReadPosRankSum=-0.895 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:563,0,514,626,577,1203:8,13,12,9 +20 10042320 . C . . END=10042340 GT:DP:GQ:MIN_DP:PL 0/0:48:99:43:0,117,1755 +20 10042341 . T . . END=10042341 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1335 +20 10042342 . T . . END=10042611 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,103,1161 +20 10042612 . A . . END=10042612 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1165 +20 10042613 . T . . END=10042618 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,114,1216 +20 10042619 . G . . END=10042619 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1143 +20 10042620 . C . . END=10042760 GT:DP:GQ:MIN_DP:PL 0/0:48:99:40:0,114,1288 +20 10042761 . A G, 732.77 . BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=187200,52;ReadPosRankSum=-0.071 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:761,0,602,830,689,1519:13,10,14,15 +20 10042762 . G . . END=10042828 GT:DP:GQ:MIN_DP:PL 0/0:59:99:51:0,120,1800 +20 10042829 . A G, 751.77 . BaseQRankSum=-0.165;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=201600,56;ReadPosRankSum=-0.809 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:780,0,566,852,659,1511:14,10,17,14 +20 10042830 . C . . END=10042935 GT:DP:GQ:MIN_DP:PL 0/0:52:99:38:0,102,1111 +20 10042936 . C . . END=10042936 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1152 +20 10042937 . C . . END=10042942 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10042943 . A . . END=10042946 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1395 +20 10042947 . T . . END=10042948 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10042949 . G . . END=10042955 GT:DP:GQ:MIN_DP:PL 0/0:38:93:33:0,93,1395 +20 10042956 . A . . END=10042958 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10042959 . T . . END=10042962 GT:DP:GQ:MIN_DP:PL 0/0:35:94:32:0,94,1021 +20 10042963 . A . . END=10042966 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10042967 . A . . END=10042967 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1048 +20 10042968 . A . . END=10042980 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,108,1088 +20 10042981 . C . . END=10042981 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1172 +20 10042982 . C . . END=10043005 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,109,1146 +20 10043006 . C . . END=10043006 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1202 +20 10043007 . T . . END=10043164 GT:DP:GQ:MIN_DP:PL 0/0:52:99:41:0,102,1381 +20 10043165 . G . . END=10043165 GT:DP:GQ:MIN_DP:PL 0/0:42:78:42:0,78,1184 +20 10043166 . T . . END=10043185 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1133 +20 10043186 . C . . END=10043186 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1091 +20 10043187 . T . . END=10043190 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10043191 . G . . END=10043191 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1099 +20 10043192 . G . . END=10043199 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,106,1093 +20 10043200 . C . . END=10043200 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1093 +20 10043201 . A . . END=10043207 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10043208 . G . . END=10043208 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10043209 . G . . END=10043211 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10043212 . G . . END=10043212 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1116 +20 10043213 . A . . END=10043214 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10043215 . G . . END=10043220 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1099 +20 10043221 . T . . END=10043224 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10043225 . T . . END=10043225 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10043226 . G . . END=10043228 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10043229 . T . . END=10043229 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10043230 . A . . END=10043233 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10043234 . A . . END=10043239 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,904 +20 10043240 . C . . END=10043240 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,904 +20 10043241 . A . . END=10043243 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10043244 . T . . END=10043261 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,994 +20 10043262 . C . . END=10043262 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1063 +20 10043263 . T . . END=10043438 GT:DP:GQ:MIN_DP:PL 0/0:46:99:36:0,102,1190 +20 10043439 . G . . END=10043439 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1121 +20 10043440 . G . . END=10043471 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1129 +20 10043472 . T . . END=10043478 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10043479 . G . . END=10043479 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,968 +20 10043480 . G . . END=10043491 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1015 +20 10043492 . A . . END=10043498 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1076 +20 10043499 . G . . END=10043501 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1084 +20 10043502 . T . . END=10043503 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10043504 . A . . END=10043504 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1152 +20 10043505 . T . . END=10043513 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,111,1665 +20 10043514 . G . . END=10043514 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1301 +20 10043515 . G . . END=10043694 GT:DP:GQ:MIN_DP:PL 0/0:49:99:38:0,100,1170 +20 10043695 . G . . END=10043695 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1163 +20 10043696 . A . . END=10043698 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10043699 . T . . END=10043699 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1150 +20 10043700 . T . . END=10043702 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10043703 . C . . END=10043719 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1084 +20 10043720 . G . . END=10043724 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1039 +20 10043725 . A . . END=10043725 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10043726 . T . . END=10043728 GT:DP:GQ:MIN_DP:PL 0/0:34:87:32:0,87,1305 +20 10043729 . G . . END=10043729 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10043730 . T . . END=10043732 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,973 +20 10043733 . T . . END=10043740 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20 10043741 . T . . END=10043741 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,1003 +20 10043742 . C . . END=10043748 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10043749 . T . . END=10043751 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10043752 . C . . END=10043752 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1088 +20 10043753 . T . . END=10043757 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1043 +20 10043758 . C . . END=10043759 GT:DP:GQ:MIN_DP:PL 0/0:33:91:32:0,91,986 +20 10043760 . A . . END=10043760 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10043761 . A . . END=10043761 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1068 +20 10043762 . A . . END=10043763 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1065 +20 10043764 . C . . END=10043768 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1022 +20 10043769 . C . . END=10043791 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1035 +20 10043792 . A . . END=10043798 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1026 +20 10043799 . A . . END=10043808 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,941 +20 10043809 . A . . END=10043813 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10043814 . T . . END=10043814 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,995 +20 10043815 . G . . END=10043815 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10043816 . A . . END=10043838 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,800 +20 10043839 . T . . END=10043839 GT:DP:GQ:MIN_DP:PL 0/0:25:47:25:0,47,724 +20 10043840 . G . . END=10043844 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,784 +20 10043845 . T . . END=10043845 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,774 +20 10043846 . A . . END=10043847 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20 10043848 . C . . END=10043850 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10043851 . G . . END=10043851 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,884 +20 10043852 . G . . END=10043853 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,920 +20 10043854 . A . . END=10043855 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10043856 . A . . END=10043870 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,101,1086 +20 10043871 . A . . END=10043871 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1055 +20 10043872 . C . . END=10043879 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10043880 . A . . END=10043880 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1102 +20 10043881 . C . . END=10043892 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1189 +20 10043893 . A . . END=10043893 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1246 +20 10043894 . T . . END=10043916 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1257 +20 10043917 . A . . END=10043917 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1176 +20 10043918 . T . . END=10044038 GT:DP:GQ:MIN_DP:PL 0/0:46:99:38:0,102,1145 +20 10044039 . A . . END=10044039 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1300 +20 10044040 . A . . END=10044172 GT:DP:GQ:MIN_DP:PL 0/0:44:99:36:0,99,1058 +20 10044173 . A . . END=10044173 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1116 +20 10044174 . G . . END=10044248 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,102,1120 +20 10044249 . T . . END=10044249 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1079 +20 10044250 . C . . END=10044251 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10044252 . G . . END=10044252 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,998 +20 10044253 . T . . END=10044279 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,101,1028 +20 10044280 . T . . END=10044280 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1175 +20 10044281 . G . . END=10044282 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,106,1216 +20 10044283 . G . . END=10044283 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1113 +20 10044284 . G . . END=10044649 GT:DP:GQ:MIN_DP:PL 0/0:50:99:36:0,102,1126 +20 10044650 . A G, 623.77 . BaseQRankSum=-5.504;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=194400,54;ReadPosRankSum=0.426 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:652,0,625,724,714,1438:14,10,17,13 +20 10044651 . T . . END=10045351 GT:DP:GQ:MIN_DP:PL 0/0:48:99:39:0,105,1212 +20 10045352 . T . . END=10045352 GT:DP:GQ:MIN_DP:PL 0/0:45:87:45:0,87,1221 +20 10045353 . C . . END=10045495 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,105,1253 +20 10045496 . C . . END=10045496 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1238 +20 10045497 . G . . END=10045512 GT:DP:GQ:MIN_DP:PL 0/0:48:99:45:0,120,1800 +20 10045513 . A . . END=10045513 GT:DP:GQ:MIN_DP:PL 0/0:50:84:50:0,84,1420 +20 10045514 . T . . END=10045533 GT:DP:GQ:MIN_DP:PL 0/0:51:99:47:0,118,1535 +20 10045534 . C . . END=10045534 GT:DP:GQ:MIN_DP:PL 0/0:49:80:49:0,80,1383 +20 10045535 . C . . END=10045552 GT:DP:GQ:MIN_DP:PL 0/0:43:99:34:0,99,1462 +20 10045553 . C . . END=10045553 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1068 +20 10045554 . T . . END=10045555 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10045556 . A . . END=10045556 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1069 +20 10045557 . A . . END=10045558 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10045559 . A . . END=10045559 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1055 +20 10045560 . T . . END=10045560 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1079 +20 10045561 . C . . END=10045583 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,105,1120 +20 10045584 . T . . END=10045584 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1123 +20 10045585 . C . . END=10045606 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1139 +20 10045607 . C . . END=10045607 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1161 +20 10045608 . A . . END=10045611 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10045612 . A . . END=10045612 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1172 +20 10045613 . C . . END=10045624 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1575 +20 10045625 . T . . END=10045625 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1284 +20 10045626 . A . . END=10045628 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +20 10045629 . A . . END=10045629 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1218 +20 10045630 . C . . END=10045631 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,100,1233 +20 10045632 . T . . END=10045632 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1251 +20 10045633 . A . . END=10045634 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10045635 . A . . END=10045635 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1131 +20 10045636 . A . . END=10045637 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10045638 . A . . END=10045638 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1124 +20 10045639 . A . . END=10045640 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10045641 . A . . END=10045641 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1060 +20 10045642 . G C, 275.77 . BaseQRankSum=-0.485;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=111600,31;ReadPosRankSum=-0.338 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:304,0,478,358,518,875:9,9,2,11 +20 10045643 . A . . END=10045644 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1124 +20 10045645 . T . . END=10045645 GT:DP:GQ:MIN_DP:PL 0/0:39:63:39:0,63,1070 +20 10045646 . T . . END=10045646 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1104 +20 10045647 . C . . END=10045648 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1210 +20 10045649 . T . . END=10045649 GT:DP:GQ:MIN_DP:PL 0/0:40:48:40:0,48,1101 +20 10045650 . A . . END=10045650 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1176 +20 10045651 . A . . END=10045651 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,104,1280 +20 10045652 . T . . END=10045652 GT:DP:GQ:MIN_DP:PL 0/0:43:80:43:0,80,1264 +20 10045653 . A . . END=10045654 GT:DP:GQ:MIN_DP:PL 0/0:42:71:42:0,71,1162 +20 10045655 . A . . END=10045655 GT:DP:GQ:MIN_DP:PL 0/0:43:93:43:0,93,1256 +20 10045656 . G . . END=10045656 GT:DP:GQ:MIN_DP:PL 0/0:42:62:42:0,62,1091 +20 10045657 . A . . END=10045657 GT:DP:GQ:MIN_DP:PL 0/0:42:34:42:0,34,1066 +20 10045658 . A . . END=10045658 GT:DP:GQ:MIN_DP:PL 0/0:42:15:42:0,15,1044 +20 10045659 . T . . END=10045659 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1142 +20 10045660 . T . . END=10045660 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,115,1230 +20 10045661 . T . . END=10045662 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1198 +20 10045663 . A . . END=10045663 GT:DP:GQ:MIN_DP:PL 0/0:43:62:43:0,62,1193 +20 10045664 . A . . END=10045664 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,117,1755 +20 10045665 . G . . END=10045665 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1213 +20 10045666 . G . . END=10045666 GT:DP:GQ:MIN_DP:PL 0/0:41:71:41:0,71,1132 +20 10045667 . G . . END=10045667 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1206 +20 10045668 . G . . END=10045668 GT:DP:GQ:MIN_DP:PL 0/0:43:78:43:0,78,1247 +20 10045669 . T . . END=10045669 GT:DP:GQ:MIN_DP:PL 0/0:44:61:44:0,61,1212 +20 10045670 . G . . END=10045670 GT:DP:GQ:MIN_DP:PL 0/0:44:82:44:0,82,1255 +20 10045671 . G . . END=10045671 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1257 +20 10045672 . A . . END=10045672 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1286 +20 10045673 . T . . END=10045674 GT:DP:GQ:MIN_DP:PL 0/0:43:91:42:0,91,1269 +20 10045675 . G . . END=10045675 GT:DP:GQ:MIN_DP:PL 0/0:43:74:43:0,74,1224 +20 10045676 . A . . END=10045676 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1288 +20 10045677 . G . . END=10045678 GT:DP:GQ:MIN_DP:PL 0/0:41:74:40:0,74,1158 +20 10045679 . A . . END=10045679 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1230 +20 10045680 . A . . END=10045680 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1292 +20 10045681 . G . . END=10045681 GT:DP:GQ:MIN_DP:PL 0/0:43:69:43:0,69,1241 +20 10045682 . A . . END=10045683 GT:DP:GQ:MIN_DP:PL 0/0:44:94:43:0,94,1230 +20 10045684 . T . . END=10045684 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +20 10045685 . G . . END=10045685 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1260 +20 10045686 . G . . END=10045688 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,99,1300 +20 10045689 . G . . END=10045689 GT:DP:GQ:MIN_DP:PL 0/0:46:77:46:0,77,1332 +20 10045690 . C . . END=10045690 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,102,1390 +20 10045691 . A . . END=10045691 GT:DP:GQ:MIN_DP:PL 0/0:46:75:46:0,75,1303 +20 10045692 . A . . END=10045692 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1411 +20 10045693 . A . . END=10045693 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1325 +20 10045694 . A . . END=10045694 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +20 10045695 . C . . END=10045695 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1283 +20 10045696 . A . . END=10045696 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,102,1322 +20 10045697 . T . . END=10045697 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1285 +20 10045698 . C . . END=10045706 GT:DP:GQ:MIN_DP:PL 0/0:47:99:46:0,104,1330 +20 10045707 . A . . END=10045707 GT:DP:GQ:MIN_DP:PL 0/0:46:91:46:0,91,1309 +20 10045708 . A . . END=10045711 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,99,1267 +20 10045712 . A . . END=10045713 GT:DP:GQ:MIN_DP:PL 0/0:47:93:46:0,93,1343 +20 10045714 . T . . END=10045714 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1361 +20 10045715 . T . . END=10045718 GT:DP:GQ:MIN_DP:PL 0/0:44:95:43:0,95,1282 +20 10045719 . T . . END=10045719 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +20 10045720 . C . . END=10045720 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1324 +20 10045721 . T . . END=10045721 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1356 +20 10045722 . T . . END=10045726 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1249 +20 10045727 . G . . END=10045727 GT:DP:GQ:MIN_DP:PL 0/0:44:52:44:0,52,1204 +20 10045728 . C . . END=10045728 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1320 +20 10045729 . T . . END=10045730 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1385 +20 10045731 . G . . END=10045731 GT:DP:GQ:MIN_DP:PL 0/0:45:91:45:0,91,1359 +20 10045732 . C . . END=10045734 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,102,1331 +20 10045735 . A . . END=10045735 GT:DP:GQ:MIN_DP:PL 0/0:45:71:45:0,71,1278 +20 10045736 . C . . END=10045736 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1284 +20 10045737 . A . . END=10045737 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1331 +20 10045738 . T . . END=10045738 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,113,1296 +20 10045739 . T . . END=10045740 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1257 +20 10045741 . T . . END=10045742 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,120,1800 +20 10045743 . A . . END=10045744 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1229 +20 10045745 . T . . END=10045745 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +20 10045746 . G . . END=10045746 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1240 +20 10045747 . T . . END=10045747 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1214 +20 10045748 . C . . END=10045748 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1263 +20 10045749 . T . . END=10045749 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10045750 . G . . END=10045750 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1170 +20 10045751 . G . . END=10045752 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1185 +20 10045753 . T . . END=10045753 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10045754 . C . . END=10045755 GT:DP:GQ:MIN_DP:PL 0/0:40:67:39:0,67,1159 +20 10045756 . C . . END=10045756 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1187 +20 10045757 . T . . END=10045757 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1289 +20 10045758 . T . . END=10045758 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +20 10045759 . G . . END=10045759 GT:DP:GQ:MIN_DP:PL 0/0:40:76:40:0,76,1150 +20 10045760 . C . . END=10045767 GT:DP:GQ:MIN_DP:PL 0/0:40:83:39:0,83,1169 +20 10045768 . A . . END=10045768 GT:DP:GQ:MIN_DP:PL 0/0:38:64:38:0,64,1124 +20 10045769 . C . . END=10045769 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1129 +20 10045770 . T . . END=10045770 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10045771 . T . . END=10045773 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1155 +20 10045774 . C . . END=10045804 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,103,1167 +20 10045805 . G . . END=10045805 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1154 +20 10045806 . A . . END=10045882 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1167 +20 10045883 . C . . END=10045883 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1149 +20 10045884 . T . . END=10045890 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10045891 . G . . END=10045891 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1141 +20 10045892 . T . . END=10045921 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1120 +20 10045922 . G . . END=10045926 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10045927 . G . . END=10045936 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1023 +20 10045937 . T . . END=10045937 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,889 +20 10045938 . C . . END=10045939 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,905 +20 10045940 . T . . END=10045955 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,968 +20 10045956 . T . . END=10045956 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1003 +20 10045957 . T . . END=10045957 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10045958 . A . . END=10045959 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +20 10045960 . A . . END=10045960 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +20 10045961 . C . . END=10045968 GT:DP:GQ:MIN_DP:PL 0/0:35:81:31:0,81,1215 +20 10045969 . C . . END=10045969 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10045970 . A . . END=10045971 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10045972 . A . . END=10045973 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10045974 . G . . END=10045989 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10045990 . A . . END=10045990 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,998 +20 10045991 . T . . END=10045992 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10045993 . A . . END=10046011 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,961 +20 10046012 . C . . END=10046021 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10046022 . G . . END=10046042 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,982 +20 10046043 . G . . END=10046043 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,988 +20 10046044 . A . . END=10046121 GT:DP:GQ:MIN_DP:PL 0/0:45:99:34:0,99,1110 +20 10046122 . A . . END=10046122 GT:DP:GQ:MIN_DP:PL 0/0:45:91:45:0,91,1326 +20 10046123 . A . . END=10046126 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,120,1800 +20 10046127 . C . . END=10046127 GT:DP:GQ:MIN_DP:PL 0/0:45:90:45:0,90,1156 +20 10046128 . A . . END=10046146 GT:DP:GQ:MIN_DP:PL 0/0:47:99:44:0,102,1456 +20 10046147 . A . . END=10046147 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1395 +20 10046148 . G . . END=10046151 GT:DP:GQ:MIN_DP:PL 0/0:44:81:42:0,81,1215 +20 10046152 . A . . END=10046153 GT:DP:GQ:MIN_DP:PL 0/0:43:78:43:0,78,1170 +20 10046154 . G . . END=10046156 GT:DP:GQ:MIN_DP:PL 0/0:43:60:43:0,60,900 +20 10046157 . G . . END=10046162 GT:DP:GQ:MIN_DP:PL 0/0:46:54:41:0,54,810 +20 10046163 . G . . END=10046163 GT:DP:GQ:MIN_DP:PL 0/0:47:51:47:0,51,765 +20 10046164 . A . . END=10046167 GT:DP:GQ:MIN_DP:PL 0/0:47:45:46:0,45,675 +20 10046168 . A . . END=10046172 GT:DP:GQ:MIN_DP:PL 0/0:51:33:49:0,33,495 +20 10046173 . A . . END=10046174 GT:DP:GQ:MIN_DP:PL 0/0:50:27:50:0,27,405 +20 10046175 . A . . END=10046176 GT:DP:GQ:MIN_DP:PL 0/0:48:18:47:0,18,270 +20 10046177 . A . . END=10046177 GT:DP:GQ:MIN_DP:PL 0/0:50:15:50:0,15,225 +20 10046178 . AAGAAAGAAAG A, 1826.73 . DP=49;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=184200,49 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046189 . A . . END=10046189 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,0 +20 10046190 . G . . END=10046197 GT:DP:GQ:MIN_DP:PL 0/0:48:99:45:0,100,1308 +20 10046198 . G . . END=10046198 GT:DP:GQ:MIN_DP:PL 0/0:46:71:46:0,71,1310 +20 10046199 . A . . END=10046199 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1323 +20 10046200 . G . . END=10046200 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1211 +20 10046201 . A . . END=10046202 GT:DP:GQ:MIN_DP:PL 0/0:44:82:43:0,82,1212 +20 10046203 . A . . END=10046203 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1331 +20 10046204 . G . . END=10046204 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1209 +20 10046205 . A . . END=10046205 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1297 +20 10046206 . G . . END=10046206 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1237 +20 10046207 . A . . END=10046216 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,110,1221 +20 10046217 . G . . END=10046221 GT:DP:GQ:MIN_DP:PL 0/0:42:96:39:0,96,1440 +20 10046222 . A . . END=10046223 GT:DP:GQ:MIN_DP:PL 0/0:38:87:37:0,87,1305 +20 10046224 . A . . END=10046225 GT:DP:GQ:MIN_DP:PL 0/0:39:90:38:0,90,1350 +20 10046226 . A . . END=10046229 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10046230 . A . . END=10046232 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1132 +20 10046233 . A . . END=10046234 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10046235 . G . . END=10046235 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1099 +20 10046236 . A . . END=10046239 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10046240 . G . . END=10046240 GT:DP:GQ:MIN_DP:PL 0/0:36:69:36:0,69,861 +20 10046241 . G . . END=10046245 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10046246 . A . . END=10046246 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10046247 . G . . END=10046247 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1066 +20 10046248 . A . . END=10046250 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10046251 . G . . END=10046259 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1084 +20 10046260 . G . . END=10046260 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10046261 . G . . END=10046261 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10046262 . A . . END=10046264 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10046265 . G . . END=10046267 GT:DP:GQ:MIN_DP:PL 0/0:35:87:33:0,87,977 +20 10046268 . A . . END=10046269 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10046270 . A . . END=10046277 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1110 +20 10046278 . A . . END=10046278 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1260 +20 10046279 . G . . END=10046279 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,923 +20 10046280 . A . . END=10046286 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1072 +20 10046287 . G . . END=10046287 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10046288 . A . . END=10046294 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10046295 . G . . END=10046300 GT:DP:GQ:MIN_DP:PL 0/0:30:75:28:0,75,1125 +20 10046301 . A . . END=10046303 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10046304 . G . . END=10046304 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10046305 . A . . END=10046306 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10046307 . G . . END=10046307 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,762 +20 10046308 . G . . END=10046308 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,676 +20 10046309 . A . . END=10046310 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20 10046311 . G . . END=10046311 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,740 +20 10046312 . A . . END=10046312 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,981 +20 10046313 . A . . END=10046316 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,961 +20 10046317 . T . . END=10046317 GT:DP:GQ:MIN_DP:PL 0/0:30:37:30:0,37,675 +20 10046318 . G . . END=10046323 GT:DP:GQ:MIN_DP:PL 0/0:32:84:29:0,84,787 +20 10046324 . A . . END=10046326 GT:DP:GQ:MIN_DP:PL 0/0:30:70:29:0,70,700 +20 10046327 . A . . END=10046329 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10046330 . G . . END=10046330 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,790 +20 10046331 . A . . END=10046334 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10046335 . A . . END=10046336 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10046337 . G . . END=10046337 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,911 +20 10046338 . A . . END=10046340 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,864 +20 10046341 . C . . END=10046341 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,799 +20 10046342 . A . . END=10046342 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10046343 . G . . END=10046344 GT:DP:GQ:MIN_DP:PL 0/0:34:83:33:0,83,976 +20 10046345 . A . . END=10046346 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10046347 . G . . END=10046347 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,988 +20 10046348 . G . . END=10046393 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,100,1064 +20 10046394 . T . . END=10046394 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1082 +20 10046395 . A . . END=10046395 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20 10046396 . A . . END=10046396 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1197 +20 10046397 . A . . END=10046403 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10046404 . A . . END=10046404 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1168 +20 10046405 . G . . END=10046411 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10046412 . A . . END=10046420 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1053 +20 10046421 . A . . END=10046421 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10046422 . A . . END=10046422 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1036 +20 10046423 . A . . END=10046430 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10046431 . A . . END=10046431 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1054 +20 10046432 . A . . END=10046432 GT:DP:GQ:MIN_DP:PL 0/0:36:82:36:0,82,1046 +20 10046433 . A . . END=10046437 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1155 +20 10046438 . T . . END=10046438 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1184 +20 10046439 . G . . END=10046448 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1620 +20 10046449 . A . . END=10046449 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1145 +20 10046450 . C . . END=10046459 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10046460 . A . . END=10046460 GT:DP:GQ:MIN_DP:PL 0/0:39:76:39:0,76,1134 +20 10046461 . C . . END=10046475 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1128 +20 10046476 . A . . END=10046476 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1215 +20 10046477 . T . . END=10046500 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,108,1306 +20 10046501 . T . . END=10046501 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1181 +20 10046502 . T . . END=10046512 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,104,1121 +20 10046513 . T . . END=10046513 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1119 +20 10046514 . A . . END=10046516 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1023 +20 10046517 . A . . END=10046517 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1121 +20 10046518 . G . . END=10046530 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1575 +20 10046531 . A . . END=10046531 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1128 +20 10046532 . A . . END=10046547 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10046548 . C . . END=10046548 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10046549 . T . . END=10046549 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10046550 . C . . END=10046550 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1070 +20 10046551 . C . . END=10046557 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10046558 . T . . END=10046569 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10046570 . T . . END=10046575 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10046576 . C . . END=10046578 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10046579 . A . . END=10046590 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,910 +20 10046591 . T . . END=10046592 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10046593 . C . . END=10046598 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10046599 . A . . END=10046599 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,913 +20 10046600 . G . . END=10046600 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10046601 . C . . END=10046601 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,871 +20 10046602 . C . . END=10046620 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,852 +20 10046621 . T . . END=10046630 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10046631 . A . . END=10046632 GT:DP:GQ:MIN_DP:PL 0/0:29:71:28:0,71,858 +20 10046633 . C . . END=10046633 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,927 +20 10046634 . A . . END=10046635 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,972 +20 10046636 . T . . END=10046636 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,943 +20 10046637 . T . . END=10046639 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,952 +20 10046640 . T . . END=10046641 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,939 +20 10046642 . A . . END=10046643 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10046644 . T . . END=10046644 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10046645 . T . . END=10046646 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1051 +20 10046647 . A . . END=10046647 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10046648 . C . . END=10046652 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10046653 . G . . END=10046653 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,995 +20 10046654 . C . . END=10046656 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10046657 . C . . END=10046658 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1160 +20 10046659 . G . . END=10046672 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1185 +20 10046673 . C . . END=10046674 GT:DP:GQ:MIN_DP:PL 0/0:41:89:40:0,89,1179 +20 10046675 . C . . END=10046675 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,1157 +20 10046676 . A . . END=10046676 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1218 +20 10046677 . A . . END=10046677 GT:DP:GQ:MIN_DP:PL 0/0:39:52:39:0,52,1127 +20 10046678 . A . . END=10046678 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1196 +20 10046679 . T . . END=10046681 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1263 +20 10046682 . A . . END=10046682 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1222 +20 10046683 . A . . END=10046683 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20 10046684 . C . . END=10046685 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1116 +20 10046686 . T . . END=10046686 GT:DP:GQ:MIN_DP:PL 0/0:40:58:40:0,58,1166 +20 10046687 . T . . END=10046687 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1269 +20 10046688 . A . . END=10046688 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10046689 . G . . END=10046691 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1176 +20 10046692 . C . . END=10046692 GT:DP:GQ:MIN_DP:PL 0/0:40:71:40:0,71,1154 +20 10046693 . T . . END=10046693 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10046694 . C . . END=10046695 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1206 +20 10046696 . A . . END=10046696 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1141 +20 10046697 . C . . END=10046698 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1137 +20 10046699 . G . . END=10046699 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1195 +20 10046700 . C . . END=10046700 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1167 +20 10046701 . C . . END=10046762 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,105,1164 +20 10046763 . T . . END=10046764 GT:DP:GQ:MIN_DP:PL 0/0:41:96:40:0,96,1440 +20 10046765 . C . . END=10046819 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1128 +20 10046820 . C . . END=10046820 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1162 +20 10046821 . A . . END=10046826 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,103,1090 +20 10046827 . A . . END=10046827 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1026 +20 10046828 . T C, 964.77 . DP=32;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=115200,32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:993,96,0,993,96,993:0,0,17,15 +20 10046829 . T . . END=10046841 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1098 +20 10046842 . A . . END=10046842 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1067 +20 10046843 . T . . END=10046850 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1395 +20 10046851 . A . . END=10046852 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1126 +20 10046853 . T . . END=10046856 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10046857 . G . . END=10046858 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10046859 . G . . END=10046859 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1048 +20 10046860 . A . . END=10046862 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10046863 . C . . END=10046863 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10046864 . T . . END=10046874 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10046875 . A . . END=10046875 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,961 +20 10046876 . T . . END=10046880 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,961 +20 10046881 . A . . END=10046881 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,934 +20 10046882 . C . . END=10046882 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10046883 . C . . END=10046883 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,979 +20 10046884 . C . . END=10046907 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,953 +20 10046908 . A . . END=10046908 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1128 +20 10046909 . T . . END=10046911 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10046912 . T . . END=10046915 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10046916 . C . . END=10046917 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10046918 . G . . END=10046919 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1084 +20 10046920 . A . . END=10046920 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1033 +20 10046921 . A . . END=10046922 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1044 +20 10046923 . C . . END=10046946 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1123 +20 10046947 . C . . END=10046947 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1151 +20 10046948 . T . . END=10046989 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,100,1097 +20 10046990 . C . . END=10046990 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1185 +20 10046991 . A . . END=10047004 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10047005 . A . . END=10047011 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1002 +20 10047012 . A . . END=10047019 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,954 +20 10047020 . T . . END=10047020 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1042 +20 10047021 . T . . END=10047023 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10047024 . T . . END=10047024 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1076 +20 10047025 . T . . END=10047025 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10047026 . C . . END=10047027 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1066 +20 10047028 . G . . END=10047028 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,990 +20 10047029 . T . . END=10047037 GT:DP:GQ:MIN_DP:PL 0/0:35:92:34:0,92,1033 +20 10047038 . T C, 524.77 . BaseQRankSum=-1.461;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=0.254 GT:AD:DP:GQ:PL:SB 0/1:11,20,0:31:99:553,0,276,586,336,922:6,5,12,8 +20 10047039 . A . . END=10047039 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10047040 . C . . END=10047040 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10047041 . C . . END=10047041 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,999 +20 10047042 . A . . END=10047053 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10047054 . T . . END=10047062 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1075 +20 10047063 . A . . END=10047069 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +20 10047070 . G . . END=10047072 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10047073 . T . . END=10047077 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10047078 . T . . END=10047078 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1066 +20 10047079 . A . . END=10047079 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10047080 . A . . END=10047106 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1110 +20 10047107 . G . . END=10047107 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,934 +20 10047108 . G . . END=10047108 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,867 +20 10047109 . C . . END=10047109 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,901 +20 10047110 . C . . END=10047111 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10047112 . A . . END=10047112 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1027 +20 10047113 . T . . END=10047119 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,995 +20 10047120 . C . . END=10047120 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1029 +20 10047121 . T . . END=10047121 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1047 +20 10047122 . G . . END=10047122 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,914 +20 10047123 . A . . END=10047125 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10047126 . G . . END=10047126 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,900 +20 10047127 . G . . END=10047127 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,945 +20 10047128 . T . . END=10047132 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1002 +20 10047133 . G . . END=10047133 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1014 +20 10047134 . C . . END=10047136 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10047137 . A . . END=10047137 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1081 +20 10047138 . C . . END=10047139 GT:DP:GQ:MIN_DP:PL 0/0:34:91:32:0,91,983 +20 10047140 . T . . END=10047141 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1021 +20 10047142 . C . . END=10047142 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,951 +20 10047143 . T . . END=10047143 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1074 +20 10047144 . C . . END=10047144 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1046 +20 10047145 . C . . END=10047146 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1017 +20 10047147 . C . . END=10047147 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1033 +20 10047148 . C . . END=10047168 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1065 +20 10047169 . A . . END=10047169 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1083 +20 10047170 . C . . END=10047216 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1149 +20 10047217 . C . . END=10047217 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1236 +20 10047218 . T . . END=10047224 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,103,1232 +20 10047225 . A . . END=10047225 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1212 +20 10047226 . A . . END=10047266 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1127 +20 10047267 . T . . END=10047267 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1168 +20 10047268 . C . . END=10047274 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1665 +20 10047275 . C . . END=10047275 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1129 +20 10047276 . T . . END=10047286 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,101,1142 +20 10047287 . A . . END=10047287 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1127 +20 10047288 . C . . END=10047291 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10047292 . A . . END=10047292 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1146 +20 10047293 . T . . END=10047340 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,99,1294 +20 10047341 . G . . END=10047341 GT:DP:GQ:MIN_DP:PL 0/0:42:83:42:0,83,1157 +20 10047342 . T . . END=10047403 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,100,1185 +20 10047404 . T . . END=10047406 GT:DP:GQ:MIN_DP:PL 0/0:42:92:41:0,92,1255 +20 10047407 . C . . END=10047407 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1226 +20 10047408 . A . . END=10047408 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +20 10047409 . A . . END=10047414 GT:DP:GQ:MIN_DP:PL 0/0:40:82:39:0,82,1163 +20 10047415 . C . . END=10047415 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10047416 . T . . END=10047416 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1204 +20 10047417 . T . . END=10047422 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20 10047423 . A . . END=10047423 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1199 +20 10047424 . C . . END=10047434 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,103,1186 +20 10047435 . G A, 500.77 . BaseQRankSum=2.750;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=151200,42;ReadPosRankSum=-0.540 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:529,0,417,588,479,1067:13,7,9,12 +20 10047436 . C . . END=10048125 GT:DP:GQ:MIN_DP:PL 0/0:51:99:39:0,99,1200 +20 10048126 . C . . END=10048126 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1268 +20 10048127 . T . . END=10048134 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10048135 . C . . END=10048135 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1071 +20 10048136 . C . . END=10048153 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,100,1163 +20 10048154 . A . . END=10048154 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1138 +20 10048155 . A . . END=10048159 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1193 +20 10048160 . T . . END=10048169 GT:DP:GQ:MIN_DP:PL 0/0:37:91:35:0,91,1162 +20 10048170 . T . . END=10048170 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1085 +20 10048171 . A . . END=10048172 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10048173 . A . . END=10048174 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10048175 . T . . END=10048175 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1174 +20 10048176 . T . . END=10048187 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10048188 . A . . END=10048188 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1207 +20 10048189 . T . . END=10048191 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10048192 . A . . END=10048192 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1058 +20 10048193 . C . . END=10048223 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1194 +20 10048224 . G . . END=10048224 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1138 +20 10048225 . C . . END=10048301 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,101,1181 +20 10048302 . A . . END=10048302 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1203 +20 10048303 . A . . END=10048310 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1166 +20 10048311 . A . . END=10048311 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1213 +20 10048312 . G . . END=10048314 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +20 10048315 . G . . END=10048315 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1209 +20 10048316 . A . . END=10048327 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1485 +20 10048328 . C . . END=10048329 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1057 +20 10048330 . G . . END=10048331 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10048332 . T . . END=10048332 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1078 +20 10048333 . T . . END=10048334 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10048335 . G . . END=10048335 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1045 +20 10048336 . T . . END=10048392 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,99,1243 +20 10048393 . C G, 1580.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,43,0:43:99:0|1:10048393_C_G:1609,132,0,1609,132,1609:0,0,23,20 +20 10048394 . G . . END=10048399 GT:DP:GQ:MIN_DP:PL 0/0:49:99:47:0,120,1800 +20 10048400 . C T, 438.77 . BaseQRankSum=2.196;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=176400,49;ReadPosRankSum=1.705 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:24,21,0:45:99:0|1:10048393_C_G:467,0,468,537,530,1067:11,13,13,8 +20 10048401 . G . . END=10048541 GT:DP:GQ:MIN_DP:PL 0/0:49:99:38:0,102,1362 +20 10048542 . C . . END=10048555 GT:DP:GQ:MIN_DP:PL 0/0:38:93:35:0,93,1395 +20 10048556 . T . . END=10048558 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10048559 . A . . END=10048559 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10048560 . T . . END=10048560 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10048561 . G . . END=10048561 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1100 +20 10048562 . T . . END=10048577 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1181 +20 10048578 . A . . END=10048578 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1094 +20 10048579 . A . . END=10048594 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,100,1209 +20 10048595 . C . . END=10048595 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1207 +20 10048596 . T . . END=10048602 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,120,1800 +20 10048603 . T . . END=10048603 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1209 +20 10048604 . C . . END=10048607 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,120,1800 +20 10048608 . C . . END=10048608 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1276 +20 10048609 . T . . END=10048694 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,100,1169 +20 10048695 . T . . END=10048695 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1232 +20 10048696 . C . . END=10048699 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,102,1530 +20 10048700 . A . . END=10048701 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1440 +20 10048702 . T . . END=10048702 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1279 +20 10048703 . T . . END=10048707 GT:DP:GQ:MIN_DP:PL 0/0:39:93:38:0,93,1395 +20 10048708 . A . . END=10048711 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10048712 . A . . END=10048715 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10048716 . T . . END=10048717 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10048718 . A . . END=10048723 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1003 +20 10048724 . T . . END=10048725 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10048726 . A . . END=10048726 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10048727 . T . . END=10048729 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10048730 . A . . END=10048882 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,99,1043 +20 10048883 . T . . END=10048883 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1217 +20 10048884 . T . . END=10048958 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,99,1060 +20 10048959 . T . . END=10048959 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1064 +20 10048960 . G . . END=10048964 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10048965 . C . . END=10048965 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1078 +20 10048966 . T . . END=10048983 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,1009 +20 10048984 . A . . END=10048984 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1120 +20 10048985 . G . . END=10048987 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10048988 . G . . END=10048988 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1141 +20 10048989 . A . . END=10048994 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,103,1166 +20 10048995 . T . . END=10048995 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1171 +20 10048996 . C . . END=10048997 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10048998 . G . . END=10048998 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1130 +20 10048999 . A . . END=10049005 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1153 +20 10049006 . G . . END=10049006 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1114 +20 10049007 . G . . END=10049011 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1049 +20 10049012 . A . . END=10049012 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1103 +20 10049013 . A . . END=10049015 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1059 +20 10049016 . T . . END=10049016 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10049017 . G . . END=10049017 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10049018 . T . . END=10049018 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1041 +20 10049019 . T . . END=10049022 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10049023 . G . . END=10049024 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10049025 . C . . END=10049026 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +20 10049027 . G . . END=10049027 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1060 +20 10049028 . T . . END=10049030 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 +20 10049031 . T . . END=10049034 GT:DP:GQ:MIN_DP:PL 0/0:34:75:33:0,75,1125 +20 10049035 . C . . END=10049035 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10049036 . T . . END=10049053 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +20 10049054 . C . . END=10049058 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10049059 . T . . END=10049059 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,902 +20 10049060 . G . . END=10049066 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10049067 . T . . END=10049070 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1017 +20 10049071 . A . . END=10049071 GT:DP:GQ:MIN_DP:PL 0/0:30:64:30:0,64,960 +20 10049072 . A . . END=10049074 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10049075 . A . . END=10049075 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10049076 . A . . END=10049078 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10049079 . G . . END=10049079 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,945 +20 10049080 . A . . END=10049081 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10049082 . A . . END=10049082 GT:DP:GQ:MIN_DP:PL 0/0:30:70:30:0,70,948 +20 10049083 . T . . END=10049106 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10049107 . A . . END=10049107 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,972 +20 10049108 . C . . END=10049119 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10049120 . A G, 538.77 . BaseQRankSum=0.571;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=-1.548 GT:AD:DP:GQ:PL:SB 0/1:11,22,0:33:99:567,0,223,599,288,888:7,4,13,9 +20 10049121 . G . . END=10049123 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10049124 . C . . END=10049126 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,977 +20 10049127 . G . . END=10049128 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1028 +20 10049129 . G . . END=10049130 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10049131 . C . . END=10049131 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10049132 . T . . END=10049133 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1081 +20 10049134 . C . . END=10049137 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10049138 . T . . END=10049138 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1049 +20 10049139 . G . . END=10049167 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,102,1069 +20 10049168 . T . . END=10049168 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1145 +20 10049169 . G . . END=10049404 GT:DP:GQ:MIN_DP:PL 0/0:48:99:39:0,110,1306 +20 10049405 . T . . END=10049405 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1378 +20 10049406 . C . . END=10049516 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,100,1197 +20 10049517 . A . . END=10049517 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1275 +20 10049518 . A . . END=10049528 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1160 +20 10049529 . T . . END=10049529 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1242 +20 10049530 . G . . END=10049538 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,106,1219 +20 10049539 . G . . END=10049539 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1255 +20 10049540 . A . . END=10049541 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,109,1252 +20 10049542 . A . . END=10049542 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1220 +20 10049543 . T . . END=10049834 GT:DP:GQ:MIN_DP:PL 0/0:51:99:40:0,104,1115 +20 10049835 . T . . END=10049835 GT:DP:GQ:MIN_DP:PL 0/0:44:89:44:0,89,1278 +20 10049836 . A . . END=10050254 GT:DP:GQ:MIN_DP:PL 0/0:49:99:39:0,99,1204 +20 10050255 . A . . END=10050255 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1149 +20 10050256 . A . . END=10050261 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10050262 . C . . END=10050268 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1099 +20 10050269 . C . . END=10050269 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10050270 . A . . END=10050270 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10050271 . A . . END=10050275 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20 10050276 . G . . END=10050278 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10050279 . G . . END=10050298 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1062 +20 10050299 . T . . END=10050299 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10050300 . C . . END=10050308 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10050309 . C . . END=10050309 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,995 +20 10050310 . G . . END=10050321 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10050322 . A . . END=10050322 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1075 +20 10050323 . A . . END=10050325 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10050326 . A . . END=10050335 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1111 +20 10050336 . T . . END=10050340 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1039 +20 10050341 . C . . END=10050341 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1022 +20 10050342 . C . . END=10050342 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1045 +20 10050343 . A . . END=10050343 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1056 +20 10050344 . A . . END=10050344 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10050345 . G . . END=10050346 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10050347 . T . . END=10050347 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1046 +20 10050348 . C . . END=10050348 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10050349 . A . . END=10050349 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1091 +20 10050350 . A . . END=10050351 GT:DP:GQ:MIN_DP:PL 0/0:36:92:35:0,92,1081 +20 10050352 . T . . END=10050352 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1096 +20 10050353 . G . . END=10050353 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10050354 . G . . END=10050354 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1028 +20 10050355 . T . . END=10050356 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1093 +20 10050357 . T . . END=10050357 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1064 +20 10050358 . T . . END=10050358 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10050359 . C . . END=10050360 GT:DP:GQ:MIN_DP:PL 0/0:35:86:34:0,86,1041 +20 10050361 . C . . END=10050368 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10050369 . A . . END=10050369 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,962 +20 10050370 . T . . END=10050371 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1007 +20 10050372 . G . . END=10050372 GT:DP:GQ:MIN_DP:PL 0/0:30:89:30:0,89,885 +20 10050373 . C . . END=10050373 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,907 +20 10050374 . A . . END=10050374 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,987 +20 10050375 . T . . END=10050375 GT:DP:GQ:MIN_DP:PL 0/0:30:68:30:0,68,839 +20 10050376 . C . . END=10050379 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,951 +20 10050380 . C . . END=10050381 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10050382 . A . . END=10050383 GT:DP:GQ:MIN_DP:PL 0/0:32:73:31:0,73,902 +20 10050384 . T . . END=10050384 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10050385 . G . . END=10050385 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,899 +20 10050386 . A . . END=10050386 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10050387 . T . . END=10050387 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,946 +20 10050388 . T . . END=10050389 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1046 +20 10050390 . C . . END=10050394 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1059 +20 10050395 . C . . END=10050395 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1016 +20 10050396 . A . . END=10050396 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1089 +20 10050397 . C . . END=10050399 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10050400 . T . . END=10050400 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10050401 . G . . END=10050401 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1022 +20 10050402 . C . . END=10050403 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10050404 . C . . END=10050404 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1065 +20 10050405 . T . . END=10050409 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10050410 . C . . END=10050413 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1177 +20 10050414 . C . . END=10050417 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10050418 . A . . END=10050422 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1138 +20 10050423 . T . . END=10050423 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1100 +20 10050424 . C . . END=10050429 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1004 +20 10050430 . G . . END=10050430 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,901 +20 10050431 . A . . END=10050432 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10050433 . C . . END=10050433 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,899 +20 10050434 . T . . END=10050434 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10050435 . C . . END=10050435 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,968 +20 10050436 . C . . END=10050436 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10050437 . T . . END=10050459 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1046 +20 10050460 . G . . END=10050460 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,1035 +20 10050461 . G . . END=10050461 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10050462 . A . . END=10050462 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1053 +20 10050463 . C . . END=10050627 GT:DP:GQ:MIN_DP:PL 0/0:41:99:34:0,99,1079 +20 10050628 . A . . END=10050628 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1221 +20 10050629 . T . . END=10050666 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,102,1264 +20 10050667 . C T, 1156.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1185,114,0,1185,114,1185:0,0,20,18 +20 10050668 . C . . END=10050672 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,108,1620 +20 10050673 . T . . END=10050673 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1146 +20 10050674 . T . . END=10050704 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,101,1124 +20 10050705 . T . . END=10050705 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1206 +20 10050706 . T . . END=10050713 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10050714 . T . . END=10050714 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1250 +20 10050715 . T . . END=10050735 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,100,1161 +20 10050736 . A . . END=10050736 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1193 +20 10050737 . C . . END=10050817 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,104,1173 +20 10050818 . T . . END=10050818 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1094 +20 10050819 . C . . END=10050827 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1162 +20 10050828 . T C, 1126.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1155,108,0,1155,108,1155:0,0,18,18 +20 10050829 . T . . END=10050888 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1182 +20 10050889 . G . . END=10050889 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1145 +20 10050890 . A . . END=10050926 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1112 +20 10050927 . T . . END=10050927 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1104 +20 10050928 . T . . END=10050950 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,104,1177 +20 10050951 . T . . END=10050951 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1145 +20 10050952 . T . . END=10051015 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1144 +20 10051016 . G . . END=10051016 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1118 +20 10051017 . G . . END=10051022 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10051023 . T . . END=10051023 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1075 +20 10051024 . G . . END=10051038 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10051039 . G . . END=10051039 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1025 +20 10051040 . T . . END=10051040 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10051041 . T . . END=10051042 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 +20 10051043 . C . . END=10051044 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10051045 . C . . END=10051045 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10051046 . A . . END=10051055 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10051056 . A . . END=10051056 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,999 +20 10051057 . T . . END=10051057 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,986 +20 10051058 . G . . END=10051059 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,976 +20 10051060 . T . . END=10051060 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,966 +20 10051061 . G . . END=10051062 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,972 +20 10051063 . G . . END=10051063 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10051064 . T . . END=10051064 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10051065 . T . . END=10051071 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10051072 . A . . END=10051075 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10051076 . G . . END=10051082 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10051083 . T . . END=10051091 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10051092 . G . . END=10051093 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10051094 . C . . END=10051094 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,906 +20 10051095 . C . . END=10051097 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,942 +20 10051098 . C . . END=10051098 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,960 +20 10051099 . C . . END=10051099 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,928 +20 10051100 . T . . END=10051106 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20 10051107 . C . . END=10051107 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1023 +20 10051108 . A . . END=10051111 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10051112 . T . . END=10051112 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1062 +20 10051113 . T . . END=10051113 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10051114 . A . . END=10051117 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1023 +20 10051118 . C . . END=10051118 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1013 +20 10051119 . A . . END=10051121 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10051122 . G . . END=10051122 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10051123 . G . . END=10051134 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1042 +20 10051135 . A . . END=10051135 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1130 +20 10051136 . A . . END=10051157 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1188 +20 10051158 . A . . END=10051158 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1274 +20 10051159 . C . . END=10051198 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,100,1086 +20 10051199 . A . . END=10051199 GT:DP:GQ:MIN_DP:PL 0/0:42:64:42:0,64,1173 +20 10051200 . A . . END=10051212 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,113,1298 +20 10051213 . G . . END=10051213 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1284 +20 10051214 . G . . END=10051330 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,106,1095 +20 10051331 . T . . END=10051331 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1086 +20 10051332 . A . . END=10051366 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,102,1062 +20 10051367 . T . . END=10051367 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1137 +20 10051368 . T . . END=10051375 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1118 +20 10051376 . A G, 485.77 . BaseQRankSum=-0.358;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=-1.189 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:514,0,430,567,490,1057:9,9,7,13 +20 10051377 . C . . END=10051378 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10051379 . A . . END=10051392 GT:DP:GQ:MIN_DP:PL 0/0:35:93:32:0,93,1395 +20 10051393 . T . . END=10051394 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,930 +20 10051395 . C . . END=10051401 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,972 +20 10051402 . T . . END=10051413 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10051414 . A . . END=10051414 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10051415 . G . . END=10051418 GT:DP:GQ:MIN_DP:PL 0/0:34:84:32:0,84,1260 +20 10051419 . C . . END=10051420 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10051421 . G . . END=10051432 GT:DP:GQ:MIN_DP:PL 0/0:32:87:30:0,87,1305 +20 10051433 . C . . END=10051433 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,968 +20 10051434 . C . . END=10051438 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10051439 . A . . END=10051439 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,887 +20 10051440 . C . . END=10051442 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10051443 . T . . END=10051445 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10051446 . C . . END=10051447 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10051448 . T C, 961.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:990,93,0,990,93,990:0,0,19,12 +20 10051449 . T . . END=10051452 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10051453 . C . . END=10051453 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,949 +20 10051454 . C . . END=10051459 GT:DP:GQ:MIN_DP:PL 0/0:32:84:28:0,84,879 +20 10051460 . T . . END=10051463 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,858 +20 10051464 . C . . END=10051465 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10051466 . C . . END=10051466 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10051467 . A . . END=10051477 GT:DP:GQ:MIN_DP:PL 0/0:31:80:30:0,80,956 +20 10051478 . G . . END=10051479 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10051480 . C . . END=10051480 GT:DP:GQ:MIN_DP:PL 0/0:33:30:33:0,30,880 +20 10051481 . C . . END=10051483 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10051484 . T . . END=10051484 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,965 +20 10051485 . T . . END=10051486 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10051487 . T . . END=10051487 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,986 +20 10051488 . C . . END=10051488 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,959 +20 10051489 . C . . END=10051489 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,980 +20 10051490 . A . . END=10051490 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10051491 . A . . END=10051492 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10051493 . A . . END=10051505 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1047 +20 10051506 . T . . END=10051506 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,956 +20 10051507 . G . . END=10051510 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,951 +20 10051511 . T . . END=10051511 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,979 +20 10051512 . G . . END=10051518 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,970 +20 10051519 . G . . END=10051519 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1016 +20 10051520 . A . . END=10051520 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1010 +20 10051521 . C . . END=10051521 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,940 +20 10051522 . A . . END=10051594 GT:DP:GQ:MIN_DP:PL 0/0:43:99:34:0,100,1078 +20 10051595 . A . . END=10051595 GT:DP:GQ:MIN_DP:PL 0/0:44:88:44:0,88,1279 +20 10051596 . C . . END=10051694 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,120,1307 +20 10051695 . G A, 638.77 . BaseQRankSum=3.951;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=165600,46;ReadPosRankSum=-0.298 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:667,0,425,729,500,1229:8,13,14,11 +20 10051696 . T . . END=10051744 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,105,1299 +20 10051745 . C . . END=10051745 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1018 +20 10051746 . C . . END=10051750 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10051751 . G . . END=10051751 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1035 +20 10051752 . A . . END=10051760 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10051761 . C . . END=10051761 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10051762 . C . . END=10051762 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,949 +20 10051763 . C . . END=10051765 GT:DP:GQ:MIN_DP:PL 0/0:37:93:33:0,93,1395 +20 10051766 . A . . END=10051982 GT:DP:GQ:MIN_DP:PL 0/0:47:99:36:0,99,1156 +20 10051983 . T . . END=10051983 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1079 +20 10051984 . T . . END=10052271 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,100,1147 +20 10052272 . C . . END=10052275 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10052276 . T . . END=10052277 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10052278 . A . . END=10052283 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10052284 . A . . END=10052434 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,99,1147 +20 10052435 . C . . END=10052435 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1177 +20 10052436 . C . . END=10052449 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1209 +20 10052450 . A . . END=10052454 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1076 +20 10052455 . A . . END=10052456 GT:DP:GQ:MIN_DP:PL 0/0:36:87:35:0,87,1077 +20 10052457 . C . . END=10052460 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10052461 . A . . END=10052461 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1064 +20 10052462 . A . . END=10052464 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10052465 . A . . END=10052465 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1043 +20 10052466 . T . . END=10052475 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10052476 . A . . END=10052491 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1053 +20 10052492 . A . . END=10052492 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1074 +20 10052493 . T . . END=10052512 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1099 +20 10052513 . G . . END=10052513 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1091 +20 10052514 . G . . END=10052514 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1091 +20 10052515 . T . . END=10052522 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1620 +20 10052523 . T . . END=10052523 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1218 +20 10052524 . T . . END=10052532 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1131 +20 10052533 . A . . END=10052533 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1192 +20 10052534 . A . . END=10052547 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1214 +20 10052548 . A . . END=10052548 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1211 +20 10052549 . T . . END=10052551 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10052552 . C . . END=10052553 GT:DP:GQ:MIN_DP:PL 0/0:38:95:37:0,95,1109 +20 10052554 . T . . END=10052571 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1244 +20 10052572 . A . . END=10052572 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1179 +20 10052573 . C . . END=10052573 GT:DP:GQ:MIN_DP:PL 0/0:39:70:39:0,70,1057 +20 10052574 . T . . END=10052624 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,102,1151 +20 10052625 . G . . END=10052625 GT:DP:GQ:MIN_DP:PL 0/0:45:75:45:0,75,1200 +20 10052626 . A . . END=10052678 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,101,1173 +20 10052679 . G . . END=10052679 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1154 +20 10052680 . A . . END=10052680 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10052681 . A . . END=10052681 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1221 +20 10052682 . A . . END=10052714 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,102,1246 +20 10052715 . C . . END=10052715 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1106 +20 10052716 . T . . END=10052717 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10052718 . G . . END=10052718 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1022 +20 10052719 . T . . END=10052729 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10052730 . T . . END=10052742 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10052743 . C . . END=10052746 GT:DP:GQ:MIN_DP:PL 0/0:34:85:32:0,85,1000 +20 10052747 . G . . END=10052748 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10052749 . G . . END=10052749 GT:DP:GQ:MIN_DP:PL 0/0:31:55:31:0,55,818 +20 10052750 . G . . END=10052757 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,957 +20 10052758 . G . . END=10052758 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,866 +20 10052759 . A . . END=10052768 GT:DP:GQ:MIN_DP:PL 0/0:31:80:29:0,80,969 +20 10052769 . A . . END=10052776 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,961 +20 10052777 . C . . END=10052780 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10052781 . T . . END=10052785 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10052786 . A . . END=10052786 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1065 +20 10052787 . A . . END=10052790 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10052791 . T . . END=10052792 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1025 +20 10052793 . G . . END=10052794 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10052795 . G . . END=10052795 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,967 +20 10052796 . T . . END=10052801 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20 10052802 . T . . END=10052802 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,922 +20 10052803 . A . . END=10052807 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10052808 . T . . END=10052808 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1008 +20 10052809 . G . . END=10052809 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10052810 . C . . END=10052810 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,984 +20 10052811 . A . . END=10052814 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1036 +20 10052815 . T . . END=10052815 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,983 +20 10052816 . A . . END=10052821 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1120 +20 10052822 . T . . END=10052822 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1163 +20 10052823 . T . . END=10052826 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10052827 . T . . END=10052830 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10052831 . A . . END=10052843 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,102,1117 +20 10052844 . A . . END=10052846 GT:DP:GQ:MIN_DP:PL 0/0:38:94:37:0,94,1079 +20 10052847 . A . . END=10052850 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,102,1530 +20 10052851 . A . . END=10052851 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1128 +20 10052852 . G . . END=10052857 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10052858 . A . . END=10052858 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1126 +20 10052859 . A . . END=10052874 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1011 +20 10052875 . A . . END=10052875 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1003 +20 10052876 . A . . END=10052879 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,983 +20 10052880 . A . . END=10052881 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10052882 . C . . END=10052882 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,973 +20 10052883 . A . . END=10052884 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10052885 . A . . END=10052885 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,993 +20 10052886 . G . . END=10052886 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,944 +20 10052887 . A . . END=10052887 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,959 +20 10052888 . T . . END=10052889 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1006 +20 10052890 . G . . END=10052890 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,975 +20 10052891 . T . . END=10052891 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1027 +20 10052892 . C . . END=10052892 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1000 +20 10052893 . A . . END=10052893 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1021 +20 10052894 . T . . END=10052894 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,976 +20 10052895 . T . . END=10052895 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1050 +20 10052896 . A . . END=10052896 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1070 +20 10052897 . T . . END=10052897 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1044 +20 10052898 . T . . END=10052898 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10052899 . C . . END=10052899 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1041 +20 10052900 . A . . END=10052904 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1079 +20 10052905 . T . . END=10052908 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10052909 . T . . END=10052909 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10052910 . G . . END=10052914 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10052915 . C . . END=10052915 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10052916 . C . . END=10052916 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1068 +20 10052917 . C . . END=10052918 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10052919 . A . . END=10052919 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1119 +20 10052920 . A . . END=10052922 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10052923 . G . . END=10052923 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,996 +20 10052924 . C . . END=10052926 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10052927 . C . . END=10052927 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1035 +20 10052928 . C . . END=10052929 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10052930 . T . . END=10052931 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,996 +20 10052932 . A . . END=10052933 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10052934 . T . . END=10052934 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1024 +20 10052935 . T . . END=10052937 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1052 +20 10052938 . C . . END=10052940 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1056 +20 10052941 . C . . END=10052943 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10052944 . T . . END=10052947 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10052948 . A . . END=10052955 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10052956 . A . . END=10052959 GT:DP:GQ:MIN_DP:PL 0/0:33:81:31:0,81,1215 +20 10052960 . G . . END=10052960 GT:DP:GQ:MIN_DP:PL 0/0:31:65:31:0,65,968 +20 10052961 . G . . END=10052961 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10052962 . T . . END=10052963 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10052964 . T . . END=10052964 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10052965 . A . . END=10052991 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,807 +20 10052992 . A . . END=10052993 GT:DP:GQ:MIN_DP:PL 0/0:28:66:27:0,66,845 +20 10052994 . T . . END=10052995 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10052996 . G . . END=10053010 GT:DP:GQ:MIN_DP:PL 0/0:28:72:25:0,72,760 +20 10053011 . C . . END=10053011 GT:DP:GQ:MIN_DP:PL 0/0:25:48:25:0,48,756 +20 10053012 . C . . END=10053020 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,750 +20 10053021 . A . . END=10053022 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,850 +20 10053023 . T G, 390.77 . BaseQRankSum=-1.451;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=100800,28;ReadPosRankSum=-1.276 GT:AD:DP:GQ:PL:SB 0/1:10,17,0:27:99:419,0,247,449,298,746:7,3,8,9 +20 10053024 . C . . END=10053025 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10053026 . C . . END=10053029 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10053030 . T . . END=10053030 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,894 +20 10053031 . G . . END=10053039 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,908 +20 10053040 . C . . END=10053041 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,982 +20 10053042 . C . . END=10053042 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10053043 . C . . END=10053044 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,962 +20 10053045 . A . . END=10053049 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10053050 . C . . END=10053051 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,887 +20 10053052 . T . . END=10053059 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10053060 . T . . END=10053060 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1044 +20 10053061 . T . . END=10053063 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10053064 . A . . END=10053082 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1020 +20 10053083 . G . . END=10053083 GT:DP:GQ:MIN_DP:PL 0/0:38:76:38:0,76,961 +20 10053084 . T . . END=10053084 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1089 +20 10053085 . G . . END=10053086 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10053087 . T . . END=10053087 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1107 +20 10053088 . A . . END=10053089 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10053090 . A . . END=10053090 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1109 +20 10053091 . C . . END=10053093 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10053094 . T . . END=10053094 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,1043 +20 10053095 . G . . END=10053095 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1029 +20 10053096 . G . . END=10053096 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,981 +20 10053097 . T . . END=10053097 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1056 +20 10053098 . A . . END=10053098 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1052 +20 10053099 . T . . END=10053099 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1071 +20 10053100 . T . . END=10053100 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1071 +20 10053101 . A . . END=10053101 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,985 +20 10053102 . T . . END=10053102 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1013 +20 10053103 . C . . END=10053107 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,995 +20 10053108 . A . . END=10053110 GT:DP:GQ:MIN_DP:PL 0/0:35:94:34:0,94,1042 +20 10053111 . T . . END=10053113 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,100,1102 +20 10053114 . A . . END=10053114 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1112 +20 10053115 . A . . END=10053117 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1086 +20 10053118 . T . . END=10053118 GT:DP:GQ:MIN_DP:PL 0/0:35:60:35:0,60,1023 +20 10053119 . A . . END=10053119 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1098 +20 10053120 . G . . END=10053120 GT:DP:GQ:MIN_DP:PL 0/0:34:73:34:0,73,1027 +20 10053121 . C . . END=10053122 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10053123 . T . . END=10053124 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1010 +20 10053125 . T . . END=10053126 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1041 +20 10053127 . C . . END=10053127 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10053128 . T . . END=10053128 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1071 +20 10053129 . C . . END=10053129 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10053130 . T . . END=10053130 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1012 +20 10053131 . C . . END=10053132 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10053133 . A . . END=10053134 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1060 +20 10053135 . G . . END=10053135 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10053136 . A . . END=10053136 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10053137 . G . . END=10053137 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1117 +20 10053138 . C . . END=10053138 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10053139 . T . . END=10053139 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1056 +20 10053140 . C . . END=10053141 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1097 +20 10053142 . A . . END=10053142 GT:DP:GQ:MIN_DP:PL 0/0:38:62:38:0,62,1077 +20 10053143 . G . . END=10053143 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1106 +20 10053144 . G . . END=10053144 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1104 +20 10053145 . T . . END=10053145 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1072 +20 10053146 . C . . END=10053146 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20 10053147 . T . . END=10053148 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1111 +20 10053149 . A . . END=10053149 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1168 +20 10053150 . G . . END=10053150 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20 10053151 . G . . END=10053151 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1136 +20 10053152 . A . . END=10053152 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1116 +20 10053153 . G . . END=10053153 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1119 +20 10053154 . G . . END=10053154 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1062 +20 10053155 . A . . END=10053156 GT:DP:GQ:MIN_DP:PL 0/0:39:92:38:0,92,1109 +20 10053157 . G . . END=10053157 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1112 +20 10053158 . T . . END=10053158 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1141 +20 10053159 . A . . END=10053160 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1085 +20 10053161 . A . . END=10053162 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1083 +20 10053163 . T . . END=10053163 GT:DP:GQ:MIN_DP:PL 0/0:39:74:39:0,74,1116 +20 10053164 . A . . END=10053164 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20 10053165 . G . . END=10053165 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1087 +20 10053166 . G . . END=10053166 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1109 +20 10053167 . A . . END=10053167 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1045 +20 10053168 . A . . END=10053171 GT:DP:GQ:MIN_DP:PL 0/0:38:93:36:0,93,1395 +20 10053172 . A . . END=10053172 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1035 +20 10053173 . T . . END=10053173 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1016 +20 10053174 . T . . END=10053174 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1054 +20 10053175 . A . . END=10053175 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1081 +20 10053176 . T . . END=10053183 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1017 +20 10053184 . A . . END=10053184 GT:DP:GQ:MIN_DP:PL 0/0:32:62:32:0,62,904 +20 10053185 . G . . END=10053190 GT:DP:GQ:MIN_DP:PL 0/0:31:82:30:0,82,909 +20 10053191 . A . . END=10053201 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,961 +20 10053202 . T . . END=10053202 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10053203 . T . . END=10053206 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10053207 . A . . END=10053207 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,975 +20 10053208 . T . . END=10053213 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10053214 . C . . END=10053216 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1058 +20 10053217 . G . . END=10053217 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,997 +20 10053218 . A . . END=10053218 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,984 +20 10053219 . T . . END=10053220 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10053221 . C . . END=10053221 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10053222 . C . . END=10053222 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1003 +20 10053223 . A . . END=10053226 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10053227 . C . . END=10053229 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10053230 . T . . END=10053233 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10053234 . A . . END=10053234 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10053235 . T . . END=10053235 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1022 +20 10053236 . G . . END=10053243 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1009 +20 10053244 . A . . END=10053244 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,983 +20 10053245 . A . . END=10053251 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,969 +20 10053252 . C . . END=10053252 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10053253 . T . . END=10053261 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10053262 . A . . END=10053262 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10053263 . G . . END=10053263 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1072 +20 10053264 . A . . END=10053264 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10053265 . A . . END=10053265 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1098 +20 10053266 . G . . END=10053266 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10053267 . G A, 354.77 . BaseQRankSum=0.321;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=129600,36;ReadPosRankSum=0.409 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:383,0,480,440,527,968:10,9,9,7 +20 10053268 . T . . END=10053275 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1077 +20 10053276 . A . . END=10053277 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10053278 . A . . END=10053280 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +20 10053281 . A . . END=10053288 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1019 +20 10053289 . C . . END=10053349 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,1008 +20 10053350 . T . . END=10053350 GT:DP:GQ:MIN_DP:PL 0/0:43:92:43:0,92,1223 +20 10053351 . C . . END=10053366 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,117,1755 +20 10053367 . C . . END=10053367 GT:DP:GQ:MIN_DP:PL 0/0:45:70:45:0,70,1249 +20 10053368 . A . . END=10053394 GT:DP:GQ:MIN_DP:PL 0/0:48:99:45:0,120,1800 +20 10053395 . G C, 1540.77 . DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=212400,59 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1569,169,0,1569,169,1569:0,0,30,27 +20 10053396 . G . . END=10053463 GT:DP:GQ:MIN_DP:PL 0/0:58:99:49:0,120,1800 +20 10053464 . T . . END=10053464 GT:DP:GQ:MIN_DP:PL 0/0:50:94:50:0,94,1435 +20 10053465 . A . . END=10053708 GT:DP:GQ:MIN_DP:PL 0/0:50:99:39:0,103,1226 +20 10053709 . C . . END=10053709 GT:DP:GQ:MIN_DP:PL 0/0:47:91:47:0,91,1335 +20 10053710 . C . . END=10053890 GT:DP:GQ:MIN_DP:PL 0/0:52:99:45:0,110,1450 +20 10053891 . C G, 1404.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=169200,47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1433,140,0,1433,140,1433:0,0,27,20 +20 10053892 . T . . END=10054050 GT:DP:GQ:MIN_DP:PL 0/0:50:99:42:0,99,1313 +20 10054051 . T . . END=10054051 GT:DP:GQ:MIN_DP:PL 0/0:50:56:50:0,56,1394 +20 10054052 . A . . END=10054116 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,111,1239 +20 10054117 . T . . END=10054117 GT:DP:GQ:MIN_DP:PL 0/0:45:50:45:0,50,1211 +20 10054118 . A . . END=10054156 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,99,1278 +20 10054157 . T . . END=10054158 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10054159 . T . . END=10054181 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1051 +20 10054182 . A . . END=10054182 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1027 +20 10054183 . T . . END=10054185 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1036 +20 10054186 . G . . END=10054186 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1034 +20 10054187 . G . . END=10054200 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1077 +20 10054201 . C . . END=10054201 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1087 +20 10054202 . A . . END=10054204 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10054205 . T . . END=10054206 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1164 +20 10054207 . G . . END=10054210 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10054211 . G . . END=10054211 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1010 +20 10054212 . G . . END=10054213 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1042 +20 10054214 . A . . END=10054214 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1111 +20 10054215 . C . . END=10054219 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1123 +20 10054220 . A . . END=10054220 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1108 +20 10054221 . G . . END=10054222 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10054223 . C . . END=10054223 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1123 +20 10054224 . T . . END=10054225 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10054226 . A . . END=10054226 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10054227 . A . . END=10054229 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10054230 . T . . END=10054233 GT:DP:GQ:MIN_DP:PL 0/0:39:93:38:0,93,1395 +20 10054234 . T . . END=10054238 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10054239 . T . . END=10054239 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10054240 . G . . END=10054241 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10054242 . T . . END=10054247 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1072 +20 10054248 . C . . END=10054248 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1057 +20 10054249 . A . . END=10054256 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10054257 . T . . END=10054257 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,955 +20 10054258 . G . . END=10054258 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,915 +20 10054259 . C . . END=10054259 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,886 +20 10054260 . T . . END=10054272 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10054273 . T . . END=10054273 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,935 +20 10054274 . T . . END=10054280 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10054281 . T . . END=10054281 GT:DP:GQ:MIN_DP:PL 0/0:29:65:29:0,65,881 +20 10054282 . T . . END=10054283 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10054284 . T . . END=10054284 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10054285 . T . . END=10054288 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,886 +20 10054289 . C . . END=10054292 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10054293 . G . . END=10054293 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,929 +20 10054294 . T . . END=10054297 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10054298 . T . . END=10054298 GT:DP:GQ:MIN_DP:PL 0/0:31:65:31:0,65,936 +20 10054299 . G . . END=10054299 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,961 +20 10054300 . A . . END=10054300 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10054301 . C . . END=10054303 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,983 +20 10054304 . A . . END=10054312 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10054313 . C . . END=10054470 GT:DP:GQ:MIN_DP:PL 0/0:45:99:33:0,99,1039 +20 10054471 . C . . END=10054471 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1200 +20 10054472 . T . . END=10054503 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,100,1182 +20 10054504 . A . . END=10054504 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1156 +20 10054505 . A . . END=10054510 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,103,1188 +20 10054511 . C . . END=10054511 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1239 +20 10054512 . A . . END=10054552 GT:DP:GQ:MIN_DP:PL 0/0:42:99:34:0,99,973 +20 10054553 . T . . END=10054553 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1236 +20 10054554 . T . . END=10054561 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,101,1254 +20 10054562 . G . . END=10054562 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1101 +20 10054563 . T . . END=10054574 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,100,1023 +20 10054575 . G . . END=10054575 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,948 +20 10054576 . A . . END=10054578 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10054579 . A . . END=10054579 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1126 +20 10054580 . T . . END=10054585 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1175 +20 10054586 . T . . END=10054586 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1239 +20 10054587 . A . . END=10054597 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,100,1240 +20 10054598 . G . . END=10054598 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1227 +20 10054599 . T . . END=10054603 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,101,1286 +20 10054604 . C . . END=10054604 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1232 +20 10054605 . T . . END=10054615 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,117,1303 +20 10054616 . G . . END=10054616 GT:DP:GQ:MIN_DP:PL 0/0:44:94:44:0,94,1232 +20 10054617 . T . . END=10054697 GT:DP:GQ:MIN_DP:PL 0/0:48:99:43:0,99,1238 +20 10054698 . A . . END=10054698 GT:DP:GQ:MIN_DP:PL 0/0:48:83:48:0,83,1358 +20 10054699 . T . . END=10055045 GT:DP:GQ:MIN_DP:PL 0/0:49:99:42:0,99,1279 +20 10055046 . A G, 501.77 . BaseQRankSum=-0.525;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=1.496 GT:AD:DP:GQ:PL:SB 0/1:18,21,0:39:99:530,0,438,584,501,1085:11,7,8,13 +20 10055047 . C . . END=10055130 GT:DP:GQ:MIN_DP:PL 0/0:48:99:40:0,100,1238 +20 10055131 . C . . END=10055131 GT:DP:GQ:MIN_DP:PL 0/0:44:81:44:0,81,1224 +20 10055132 . A . . END=10055216 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,102,1149 +20 10055217 . A . . END=10055217 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1313 +20 10055218 . T . . END=10055685 GT:DP:GQ:MIN_DP:PL 0/0:52:99:41:0,102,1271 +20 10055686 . G . . END=10055686 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1339 +20 10055687 . C . . END=10055803 GT:DP:GQ:MIN_DP:PL 0/0:45:99:37:0,99,1170 +20 10055804 . A . . END=10055808 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10055809 . A . . END=10055809 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10055810 . A . . END=10055813 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10055814 . T . . END=10055814 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10055815 . A . . END=10055816 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10055817 . C . . END=10055817 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,983 +20 10055818 . A . . END=10055818 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,1019 +20 10055819 . A . . END=10055822 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10055823 . G . . END=10055825 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10055826 . A . . END=10055828 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10055829 . T C, 317.77 . BaseQRankSum=-2.257;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=0.424 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:346,0,466,397,511,908:7,10,9,6 +20 10055830 . T . . END=10055839 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10055840 . T . . END=10055840 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,1052 +20 10055841 . T . . END=10055843 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10055844 . G . . END=10055848 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10055849 . A . . END=10055849 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1158 +20 10055850 . G . . END=10055854 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10055855 . C . . END=10055855 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1164 +20 10055856 . T . . END=10055860 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1073 +20 10055861 . A . . END=10055861 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1100 +20 10055862 . C . . END=10055862 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10055863 . A . . END=10055863 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1094 +20 10055864 . A . . END=10055870 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1082 +20 10055871 . T . . END=10055871 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1116 +20 10055872 . C . . END=10055877 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1144 +20 10055878 . G . . END=10055878 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1124 +20 10055879 . A . . END=10055884 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10055885 . T . . END=10055885 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1172 +20 10055886 . G . . END=10055886 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20 10055887 . A . . END=10055887 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1104 +20 10055888 . T . . END=10055889 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,114,1710 +20 10055890 . G . . END=10055890 GT:DP:GQ:MIN_DP:PL 0/0:40:76:40:0,76,1165 +20 10055891 . C . . END=10055939 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,110,1331 +20 10055940 . G . . END=10055940 GT:DP:GQ:MIN_DP:PL 0/0:45:85:45:0,85,1288 +20 10055941 . C . . END=10055963 GT:DP:GQ:MIN_DP:PL 0/0:47:99:44:0,114,1439 +20 10055964 . G . . END=10055964 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1287 +20 10055965 . C . . END=10055979 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,101,1204 +20 10055980 . G . . END=10055980 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1195 +20 10055981 . T . . END=10056003 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,101,1140 +20 10056004 . C . . END=10056004 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1064 +20 10056005 . A . . END=10056025 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,105,1234 +20 10056026 . C G, 435.77 . BaseQRankSum=1.777;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=-0.753 GT:AD:DP:GQ:PL:SB 0/1:18,19,0:37:99:464,0,405,518,461,980:5,13,10,9 +20 10056027 . G . . END=10056032 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1575 +20 10056033 . G . . END=10056034 GT:DP:GQ:MIN_DP:PL 0/0:40:96:39:0,96,1440 +20 10056035 . A . . END=10056043 GT:DP:GQ:MIN_DP:PL 0/0:37:81:34:0,81,1215 +20 10056044 . A . . END=10056049 GT:DP:GQ:MIN_DP:PL 0/0:30:75:28:0,75,1125 +20 10056050 . A . . END=10056050 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,847 +20 10056051 . A . . END=10056054 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20 10056055 . A . . END=10056055 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,801 +20 10056056 . T . . END=10056062 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20 10056063 . A . . END=10056064 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10056065 . A . . END=10056065 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10056066 . A . . END=10056066 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10056067 . A . . END=10056067 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10056068 . T . . END=10056071 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10056072 . T . . END=10056073 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10056074 . G . . END=10056074 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10056075 . G . . END=10056075 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10056076 . C . . END=10056076 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1018 +20 10056077 . A . . END=10056097 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,943 +20 10056098 . A . . END=10056098 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,913 +20 10056099 . C . . END=10056102 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,949 +20 10056103 . C . . END=10056103 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,927 +20 10056104 . C . . END=10056104 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,986 +20 10056105 . C . . END=10056105 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1016 +20 10056106 . C . . END=10056107 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1057 +20 10056108 . C . . END=10056108 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,927 +20 10056109 . G . . END=10056109 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,832 +20 10056110 . C . . END=10056111 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1099 +20 10056112 . G . . END=10056112 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1022 +20 10056113 . T . . END=10056113 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,117,1171 +20 10056114 . T . . END=10056114 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1095 +20 10056115 . C . . END=10056124 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1133 +20 10056125 . G . . END=10056125 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1071 +20 10056126 . G . . END=10056130 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1117 +20 10056131 . T . . END=10056131 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1068 +20 10056132 . C . . END=10056133 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1108 +20 10056134 . C . . END=10056134 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1091 +20 10056135 . A . . END=10056139 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10056140 . C . . END=10056140 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1117 +20 10056141 . C . . END=10056149 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10056150 . A . . END=10056154 GT:DP:GQ:MIN_DP:PL 0/0:38:93:36:0,93,1112 +20 10056155 . A . . END=10056162 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,1043 +20 10056163 . A . . END=10056167 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10056168 . T . . END=10056172 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10056173 . A . . END=10056173 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1106 +20 10056174 . T . . END=10056192 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1140 +20 10056193 . A . . END=10056193 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1190 +20 10056194 . G . . END=10056196 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,106,1167 +20 10056197 . A . . END=10056197 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1164 +20 10056198 . T . . END=10056198 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10056199 . T . . END=10056199 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1151 +20 10056200 . T . . END=10056201 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,108,1620 +20 10056202 . A . . END=10056202 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1146 +20 10056203 . T . . END=10056207 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,111,1665 +20 10056208 . A . . END=10056208 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1205 +20 10056209 . A . . END=10056210 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10056211 . T . . END=10056211 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1217 +20 10056212 . T . . END=10056213 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10056214 . A . . END=10056225 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1051 +20 10056226 . A . . END=10056226 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10056227 . C . . END=10056227 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10056228 . A . . END=10056231 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10056232 . A . . END=10056232 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1119 +20 10056233 . A . . END=10056243 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,996 +20 10056244 . T . . END=10056244 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1083 +20 10056245 . G . . END=10056247 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10056248 . T . . END=10056248 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1140 +20 10056249 . T . . END=10056264 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1133 +20 10056265 . T . . END=10056265 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1181 +20 10056266 . A . . END=10056330 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,108,1167 +20 10056331 . C . . END=10056331 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1181 +20 10056332 . C . . END=10056362 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,103,1172 +20 10056363 . T . . END=10056363 GT:DP:GQ:MIN_DP:PL 0/0:44:85:44:0,85,1243 +20 10056364 . C . . END=10056572 GT:DP:GQ:MIN_DP:PL 0/0:49:99:37:0,99,1191 +20 10056573 . G . . END=10056577 GT:DP:GQ:MIN_DP:PL 0/0:38:94:37:0,94,1146 +20 10056578 . T . . END=10056579 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10056580 . C . . END=10056581 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10056582 . G . . END=10056583 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10056584 . A . . END=10056584 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1159 +20 10056585 . A . . END=10056586 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10056587 . G . . END=10056587 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,971 +20 10056588 . T . . END=10056589 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10056590 . T . . END=10056590 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1141 +20 10056591 . C . . END=10056592 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1140 +20 10056593 . C . . END=10056593 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1127 +20 10056594 . T . . END=10056606 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1101 +20 10056607 . G . . END=10056607 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,975 +20 10056608 . G . . END=10056612 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10056613 . A . . END=10056615 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10056616 . C . . END=10056628 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1018 +20 10056629 . A . . END=10056629 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1011 +20 10056630 . G . . END=10056634 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1009 +20 10056635 . A . . END=10056635 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1036 +20 10056636 . A . . END=10056640 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1011 +20 10056641 . G . . END=10056645 GT:DP:GQ:MIN_DP:PL 0/0:34:91:31:0,91,957 +20 10056646 . T . . END=10056647 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10056648 . A . . END=10056648 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1112 +20 10056649 . G . . END=10056711 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1142 +20 10056712 . C . . END=10056712 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1173 +20 10056713 . T . . END=10056781 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,99,1150 +20 10056782 . A C, 633.77 . BaseQRankSum=-1.811;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=2.507 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:26,17,0:43:99:0|1:10056782_A_C:662,0,1496,740,1550,2290:16,10,7,10 +20 10056783 . C . . END=10056783 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +20 10056784 . A C, 633.77 . BaseQRankSum=-0.910;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=2.145 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:25,18,0:43:99:0|1:10056782_A_C:662,0,1496,740,1550,2290:15,10,8,10 +20 10056785 . A . . END=10056845 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,99,1146 +20 10056846 . C . . END=10056846 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1144 +20 10056847 . A . . END=10056852 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,111,1665 +20 10056853 . G . . END=10056853 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1136 +20 10056854 . A . . END=10056858 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1122 +20 10056859 . T . . END=10056859 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1081 +20 10056860 . G . . END=10056884 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,102,1181 +20 10056885 . T . . END=10056885 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1322 +20 10056886 . T . . END=10056912 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,99,1219 +20 10056913 . C . . END=10056913 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1292 +20 10056914 . A . . END=10057222 GT:DP:GQ:MIN_DP:PL 0/0:49:99:36:0,102,1288 +20 10057223 . G . . END=10057223 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1070 +20 10057224 . A . . END=10057585 GT:DP:GQ:MIN_DP:PL 0/0:54:99:36:0,105,1038 +20 10057586 . C . . END=10057586 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1161 +20 10057587 . T . . END=10057675 GT:DP:GQ:MIN_DP:PL 0/0:42:99:36:0,99,1146 +20 10057676 . T . . END=10057676 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1261 +20 10057677 . G . . END=10057918 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,101,1192 +20 10057919 . C . . END=10057919 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1200 +20 10057920 . A . . END=10057921 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,105,1575 +20 10057922 . G . . END=10057922 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1235 +20 10057923 . C . . END=10057933 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1530 +20 10057934 . T . . END=10057934 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1065 +20 10057935 . G . . END=10057936 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10057937 . T . . END=10057937 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1102 +20 10057938 . C . . END=10057940 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10057941 . A . . END=10057941 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1048 +20 10057942 . A . . END=10057945 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1035 +20 10057946 . A . . END=10057946 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1051 +20 10057947 . C . . END=10057953 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10057954 . C . . END=10057955 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10057956 . T . . END=10057957 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1001 +20 10057958 . A . . END=10057958 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,1028 +20 10057959 . C . . END=10057959 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10057960 . T . . END=10057974 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10057975 . G . . END=10057977 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10057978 . C . . END=10057993 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1044 +20 10057994 . T . . END=10057994 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1031 +20 10057995 . T . . END=10057995 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10057996 . T . . END=10057996 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1017 +20 10057997 . A . . END=10057999 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10058000 . G . . END=10058003 GT:DP:GQ:MIN_DP:PL 0/0:34:84:31:0,84,1014 +20 10058004 . C . . END=10058004 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +20 10058005 . T . . END=10058018 GT:DP:GQ:MIN_DP:PL 0/0:31:81:28:0,81,905 +20 10058019 . T . . END=10058028 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10058029 . C . . END=10058029 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,982 +20 10058030 . T . . END=10058030 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,991 +20 10058031 . T . . END=10058031 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10058032 . G . . END=10058032 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,909 +20 10058033 . C . . END=10058035 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10058036 . A . . END=10058036 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1027 +20 10058037 . C . . END=10058039 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1038 +20 10058040 . T . . END=10058040 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,971 +20 10058041 . T . . END=10058041 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,946 +20 10058042 . C . . END=10058049 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,977 +20 10058050 . T . . END=10058051 GT:DP:GQ:MIN_DP:PL 0/0:33:82:32:0,82,991 +20 10058052 . G . . END=10058053 GT:DP:GQ:MIN_DP:PL 0/0:32:95:32:0,95,965 +20 10058054 . T . . END=10058054 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1044 +20 10058055 . T . . END=10058055 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,961 +20 10058056 . A . . END=10058056 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1082 +20 10058057 . T . . END=10058060 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10058061 . G . . END=10058062 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1062 +20 10058063 . T . . END=10058063 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10058064 . C . . END=10058064 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,977 +20 10058065 . A . . END=10058085 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,103,1086 +20 10058086 . T . . END=10058086 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1134 +20 10058087 . A . . END=10058161 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,101,1175 +20 10058162 . G . . END=10058162 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1129 +20 10058163 . G . . END=10058178 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,108,1127 +20 10058179 . T . . END=10058179 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1088 +20 10058180 . C . . END=10058181 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10058182 . A . . END=10058182 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1108 +20 10058183 . A . . END=10058184 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20 10058185 . T . . END=10058185 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1130 +20 10058186 . A . . END=10058189 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1100 +20 10058190 . T . . END=10058190 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1023 +20 10058191 . G . . END=10058193 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1072 +20 10058194 . T . . END=10058194 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1021 +20 10058195 . G . . END=10058206 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1530 +20 10058207 . G . . END=10058207 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1068 +20 10058208 . A . . END=10058210 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10058211 . A . . END=10058211 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,978 +20 10058212 . C . . END=10058212 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1000 +20 10058213 . T . . END=10058236 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1120 +20 10058237 . G . . END=10058239 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10058240 . C . . END=10058240 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10058241 . T . . END=10058243 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20 10058244 . G . . END=10058245 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10058246 . G . . END=10058247 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20 10058248 . G A, 869.77 . BaseQRankSum=1.766;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=111600,31;ReadPosRankSum=-0.606 GT:AD:DP:GQ:PL:SB 1/1:1,30,0:31:82:898,82,0,900,89,907:1,0,15,15 +20 10058249 . A . . END=10058251 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1020 +20 10058252 . C . . END=10058252 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,880 +20 10058253 . G . . END=10058253 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10058254 . C . . END=10058257 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +20 10058258 . T . . END=10058258 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,882 +20 10058259 . C . . END=10058260 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10058261 . C . . END=10058261 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,997 +20 10058262 . C . . END=10058263 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10058264 . T . . END=10058265 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10058266 . A . . END=10058266 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,928 +20 10058267 . C . . END=10058271 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10058272 . T . . END=10058272 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,968 +20 10058273 . A . . END=10058273 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10058274 . G . . END=10058274 GT:DP:GQ:MIN_DP:PL 0/0:28:58:28:0,58,838 +20 10058275 . G . . END=10058286 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10058287 . T . . END=10058287 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,881 +20 10058288 . C . . END=10058290 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,926 +20 10058291 . T . . END=10058295 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,929 +20 10058296 . T . . END=10058303 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10058304 . T . . END=10058307 GT:DP:GQ:MIN_DP:PL 0/0:30:78:28:0,78,1170 +20 10058308 . C . . END=10058310 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10058311 . T . . END=10058311 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,848 +20 10058312 . T . . END=10058314 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,828 +20 10058315 . A . . END=10058315 GT:DP:GQ:MIN_DP:PL 0/0:27:70:27:0,70,782 +20 10058316 . C . . END=10058328 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,781 +20 10058329 . G . . END=10058329 GT:DP:GQ:MIN_DP:PL 0/0:29:55:29:0,55,866 +20 10058330 . C . . END=10058330 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,865 +20 10058331 . T . . END=10058335 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10058336 . T . . END=10058336 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10058337 . C . . END=10058338 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10058339 . C . . END=10058339 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,943 +20 10058340 . A . . END=10058343 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,918 +20 10058344 . T . . END=10058347 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10058348 . T . . END=10058348 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10058349 . A . . END=10058349 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10058350 . T . . END=10058351 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,955 +20 10058352 . A . . END=10058352 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,881 +20 10058353 . T . . END=10058355 GT:DP:GQ:MIN_DP:PL 0/0:33:84:31:0,84,1260 +20 10058356 . T . . END=10058356 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 +20 10058357 . T . . END=10058357 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,939 +20 10058358 . T . . END=10058359 GT:DP:GQ:MIN_DP:PL 0/0:32:78:30:0,78,1170 +20 10058360 . C . . END=10058360 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10058361 . T . . END=10058361 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,883 +20 10058362 . C . . END=10058364 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10058365 . A . . END=10058367 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,859 +20 10058368 . T . . END=10058368 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10058369 . A . . END=10058373 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10058374 . G . . END=10058375 GT:DP:GQ:MIN_DP:PL 0/0:31:76:30:0,76,871 +20 10058376 . T . . END=10058376 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10058377 . T . . END=10058383 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10058384 . G . . END=10058384 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10058385 . A . . END=10058385 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,900 +20 10058386 . C . . END=10058387 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10058388 . G . . END=10058388 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,847 +20 10058389 . T . . END=10058389 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10058390 . G . . END=10058390 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,984 +20 10058391 . G . . END=10058391 GT:DP:GQ:MIN_DP:PL 0/0:33:77:33:0,77,918 +20 10058392 . C . . END=10058397 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1049 +20 10058398 . A . . END=10058400 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10058401 . G . . END=10058401 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,994 +20 10058402 . C . . END=10058406 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1182 +20 10058407 . A . . END=10058407 GT:DP:GQ:MIN_DP:PL 0/0:38:68:38:0,68,1096 +20 10058408 . A . . END=10058412 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10058413 . T . . END=10058413 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1056 +20 10058414 . T . . END=10058430 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1100 +20 10058431 . G . . END=10058431 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1044 +20 10058432 . A . . END=10058440 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1153 +20 10058441 . A . . END=10058441 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1110 +20 10058442 . T . . END=10058455 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1149 +20 10058456 . T . . END=10058456 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1086 +20 10058457 . C . . END=10058562 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,105,1178 +20 10058563 . G . . END=10058563 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1158 +20 10058564 . A . . END=10058571 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,117,1755 +20 10058572 . T . . END=10058572 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1096 +20 10058573 . C . . END=10058644 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,99,1167 +20 10058645 . A . . END=10058645 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1209 +20 10058646 . C . . END=10058679 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,100,1193 +20 10058680 . C . . END=10058680 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1181 +20 10058681 . A . . END=10058740 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,112,1413 +20 10058741 . C . . END=10058741 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1318 +20 10058742 . A . . END=10058823 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,105,1214 +20 10058824 . G . . END=10058824 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1062 +20 10058825 . T . . END=10058826 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,114,1710 +20 10058827 . G . . END=10058827 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1239 +20 10058828 . G . . END=10058902 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,105,1231 +20 10058903 . A . . END=10058903 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1222 +20 10058904 . A . . END=10058908 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1138 +20 10058909 . T . . END=10058910 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10058911 . A . . END=10058911 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +20 10058912 . A . . END=10058912 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 +20 10058913 . T . . END=10058913 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10058914 . C . . END=10058914 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1174 +20 10058915 . A . . END=10058924 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,108,1195 +20 10058925 . T . . END=10058925 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1151 +20 10058926 . T . . END=10058931 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1174 +20 10058932 . A . . END=10058932 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1195 +20 10058933 . T . . END=10058937 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,103,1241 +20 10058938 . C . . END=10058938 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1175 +20 10058939 . C . . END=10058956 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,101,1225 +20 10058957 . C . . END=10058957 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1142 +20 10058958 . C . . END=10058974 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,103,1194 +20 10058975 . C . . END=10058975 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1141 +20 10058976 . T . . END=10058980 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10058981 . G . . END=10058981 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1090 +20 10058982 . A . . END=10058987 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,93,1395 +20 10058988 . T . . END=10058990 GT:DP:GQ:MIN_DP:PL 0/0:33:82:31:0,82,971 +20 10058991 . C . . END=10058991 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,962 +20 10058992 . T . . END=10058992 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20 10058993 . C . . END=10058993 GT:DP:GQ:MIN_DP:PL 0/0:33:62:33:0,62,920 +20 10058994 . C . . END=10058995 GT:DP:GQ:MIN_DP:PL 0/0:32:78:31:0,78,1170 +20 10058996 . A . . END=10058996 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,925 +20 10058997 . A . . END=10059001 GT:DP:GQ:MIN_DP:PL 0/0:31:78:29:0,78,1170 +20 10059002 . G . . END=10059002 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10059003 . G . . END=10059008 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20 10059009 . C . . END=10059009 GT:DP:GQ:MIN_DP:PL 0/0:27:58:27:0,58,763 +20 10059010 . C . . END=10059010 GT:DP:GQ:MIN_DP:PL 0/0:30:59:30:0,59,811 +20 10059011 . A . . END=10059014 GT:DP:GQ:MIN_DP:PL 0/0:30:81:27:0,81,833 +20 10059015 . C . . END=10059015 GT:DP:GQ:MIN_DP:PL 0/0:27:50:27:0,50,797 +20 10059016 . T . . END=10059016 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,863 +20 10059017 . C . . END=10059017 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,834 +20 10059018 . C . . END=10059024 GT:DP:GQ:MIN_DP:PL 0/0:30:81:27:0,81,848 +20 10059025 . T . . END=10059025 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10059026 . T . . END=10059026 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,943 +20 10059027 . C . . END=10059027 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,895 +20 10059028 . T . . END=10059029 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10059030 . T . . END=10059030 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1010 +20 10059031 . T . . END=10059031 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,985 +20 10059032 . T . . END=10059032 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10059033 . C . . END=10059033 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,948 +20 10059034 . A . . END=10059034 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1017 +20 10059035 . C . . END=10059040 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10059041 . T . . END=10059041 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1053 +20 10059042 . C . . END=10059050 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1068 +20 10059051 . C . . END=10059051 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,965 +20 10059052 . G . . END=10059055 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1031 +20 10059056 . C . . END=10059056 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1075 +20 10059057 . T . . END=10059065 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10059066 . A . . END=10059066 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1036 +20 10059067 . G . . END=10059067 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,976 +20 10059068 . C . . END=10059076 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10059077 . C . . END=10059078 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10059079 . T . . END=10059080 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10059081 . G . . END=10059081 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10059082 . C . . END=10059087 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10059088 . C . . END=10059089 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10059090 . C . . END=10059092 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10059093 . T . . END=10059093 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,973 +20 10059094 . A . . END=10059095 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10059096 . T . . END=10059096 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,950 +20 10059097 . G . . END=10059099 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,981 +20 10059100 . C . . END=10059100 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,916 +20 10059101 . T . . END=10059105 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,975 +20 10059106 . G . . END=10059106 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,941 +20 10059107 . A . . END=10059107 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10059108 . A . . END=10059110 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10059111 . A . . END=10059111 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1096 +20 10059112 . G . . END=10059112 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10059113 . A . . END=10059113 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1016 +20 10059114 . T . . END=10059116 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10059117 . A . . END=10059117 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1021 +20 10059118 . G . . END=10059121 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10059122 . T . . END=10059134 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10059135 . A . . END=10059135 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1131 +20 10059136 . T . . END=10059142 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10059143 . G . . END=10059143 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1107 +20 10059144 . C . . END=10059147 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1105 +20 10059148 . A . . END=10059148 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1118 +20 10059149 . A . . END=10059151 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10059152 . A . . END=10059158 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10059159 . G . . END=10059159 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10059160 . G . . END=10059160 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1079 +20 10059161 . A . . END=10059161 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10059162 . T . . END=10059163 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10059164 . A . . END=10059164 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10059165 . G . . END=10059170 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1055 +20 10059171 . T . . END=10059171 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10059172 . T . . END=10059174 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1004 +20 10059175 . G . . END=10059176 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10059177 . A . . END=10059177 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10059178 . C . . END=10059178 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10059179 . T . . END=10059185 GT:DP:GQ:MIN_DP:PL 0/0:36:90:32:0,90,1350 +20 10059186 . C . . END=10059186 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,940 +20 10059187 . C . . END=10059188 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10059189 . T . . END=10059190 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,908 +20 10059191 . G . . END=10059196 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,952 +20 10059197 . A . . END=10059197 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,978 +20 10059198 . C . . END=10059200 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1046 +20 10059201 . C . . END=10059201 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1003 +20 10059202 . T . . END=10059212 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,974 +20 10059213 . C . . END=10059213 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,984 +20 10059214 . T . . END=10059216 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10059217 . T . . END=10059217 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1020 +20 10059218 . T . . END=10059218 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10059219 . C . . END=10059219 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,991 +20 10059220 . C . . END=10059226 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10059227 . A . . END=10059236 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,957 +20 10059237 . A . . END=10059246 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,872 +20 10059247 . C . . END=10059247 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10059248 . T . . END=10059248 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10059249 . T . . END=10059258 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,936 +20 10059259 . G . . END=10059264 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,855 +20 10059265 . T . . END=10059265 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,817 +20 10059266 . C . . END=10059268 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +20 10059269 . A . . END=10059271 GT:DP:GQ:MIN_DP:PL 0/0:31:69:26:0,69,1035 +20 10059272 . C . . END=10059273 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +20 10059274 . G . . END=10059275 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,786 +20 10059276 . A . . END=10059281 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20 10059282 . C . . END=10059286 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,852 +20 10059287 . C . . END=10059296 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20 10059297 . G . . END=10059297 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,877 +20 10059298 . C . . END=10059299 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20 10059300 . T . . END=10059306 GT:DP:GQ:MIN_DP:PL 0/0:30:82:29:0,82,907 +20 10059307 . C . . END=10059317 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,917 +20 10059318 . G . . END=10059333 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10059334 . G . . END=10059334 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,894 +20 10059335 . C . . END=10059339 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10059340 . C . . END=10059345 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,832 +20 10059346 . T . . END=10059348 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10059349 . G . . END=10059353 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20 10059354 . T . . END=10059354 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10059355 . G . . END=10059365 GT:DP:GQ:MIN_DP:PL 0/0:29:75:26:0,75,819 +20 10059366 . C . . END=10059376 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,827 +20 10059377 . C . . END=10059377 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10059378 . A . . END=10059379 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10059380 . C . . END=10059380 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10059381 . C . . END=10059387 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10059388 . G . . END=10059395 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10059396 . A . . END=10059396 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1051 +20 10059397 . G . . END=10059397 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10059398 . A . . END=10059400 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10059401 . T . . END=10059401 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1030 +20 10059402 . G . . END=10059412 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1048 +20 10059413 . G . . END=10059413 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1061 +20 10059414 . T . . END=10059428 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,933 +20 10059429 . G . . END=10059429 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,926 +20 10059430 . C . . END=10059435 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1051 +20 10059436 . T . . END=10059436 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1079 +20 10059437 . C . . END=10059442 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1075 +20 10059443 . T . . END=10059449 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10059450 . G . . END=10059454 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1071 +20 10059455 . C . . END=10059455 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,945 +20 10059456 . C . . END=10059461 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,998 +20 10059462 . A . . END=10059462 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1086 +20 10059463 . G . . END=10059477 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,105,1076 +20 10059478 . C . . END=10059478 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1071 +20 10059479 . T . . END=10059484 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,111,1134 +20 10059485 . A . . END=10059485 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1050 +20 10059486 . T . . END=10059490 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1110 +20 10059491 . C . . END=10059491 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1054 +20 10059492 . G . . END=10059497 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,103,1113 +20 10059498 . A . . END=10059498 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1157 +20 10059499 . A . . END=10059507 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,109,1135 +20 10059508 . C . . END=10059508 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1167 +20 10059509 . A . . END=10059542 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1133 +20 10059543 . A . . END=10059557 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10059558 . G . . END=10059560 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10059561 . G . . END=10059563 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,985 +20 10059564 . G . . END=10059568 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1070 +20 10059569 . C . . END=10059573 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1032 +20 10059574 . G . . END=10059574 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,976 +20 10059575 . C . . END=10059582 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10059583 . C . . END=10059583 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10059584 . A . . END=10059584 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1098 +20 10059585 . C . . END=10059603 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1043 +20 10059604 . G . . END=10059604 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1023 +20 10059605 . C . . END=10059644 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1135 +20 10059645 . T . . END=10059646 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10059647 . C . . END=10059652 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10059653 . G . . END=10059655 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10059656 . T . . END=10059656 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1012 +20 10059657 . G . . END=10059672 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1010 +20 10059673 . T . . END=10059693 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,908 +20 10059694 . A . . END=10059694 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,931 +20 10059695 . G . . END=10059696 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10059697 . A . . END=10059700 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10059701 . T . . END=10059708 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10059709 . G . . END=10059709 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10059710 . G . . END=10059712 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10059713 . C . . END=10059724 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1034 +20 10059725 . G . . END=10059736 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +20 10059737 . G . . END=10059739 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10059740 . T . . END=10059740 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10059741 . T . . END=10059741 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,992 +20 10059742 . T . . END=10059745 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10059746 . A . . END=10059748 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10059749 . C . . END=10059754 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20 10059755 . G . . END=10059756 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10059757 . T . . END=10059774 GT:DP:GQ:MIN_DP:PL 0/0:28:75:25:0,75,810 +20 10059775 . T . . END=10059776 GT:DP:GQ:MIN_DP:PL 0/0:27:62:27:0,62,810 +20 10059777 . G . . END=10059778 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20 10059779 . G . . END=10059782 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10059783 . T . . END=10059786 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10059787 . C . . END=10059787 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,967 +20 10059788 . A . . END=10059798 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1012 +20 10059799 . C . . END=10059814 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,999 +20 10059815 . G . . END=10059815 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1019 +20 10059816 . C . . END=10059843 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,103,1085 +20 10059844 . A . . END=10059844 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1170 +20 10059845 . A . . END=10059853 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10059854 . A . . END=10059854 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1087 +20 10059855 . G . . END=10059856 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10059857 . T . . END=10059859 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1090 +20 10059860 . C . . END=10059876 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1117 +20 10059877 . C . . END=10059877 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1048 +20 10059878 . C . . END=10059880 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10059881 . C . . END=10059881 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10059882 . T . . END=10059899 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1131 +20 10059900 . G . . END=10059900 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1169 +20 10059901 . G . . END=10059917 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1113 +20 10059918 . T . . END=10059918 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1182 +20 10059919 . A . . END=10060111 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,99,1097 +20 10060112 . A . . END=10060113 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10060114 . C . . END=10060127 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20 10060128 . A . . END=10060128 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,1045 +20 10060129 . T . . END=10060130 GT:DP:GQ:MIN_DP:PL 0/0:34:94:33:0,94,934 +20 10060131 . T . . END=10060137 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1042 +20 10060138 . A . . END=10060138 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1060 +20 10060139 . A . . END=10060149 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1043 +20 10060150 . A . . END=10060150 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1138 +20 10060151 . A . . END=10060151 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1085 +20 10060152 . G . . END=10060222 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,99,1079 +20 10060223 . C . . END=10060223 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1264 +20 10060224 . A . . END=10060410 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,102,1272 +20 10060411 . T . . END=10060411 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1033 +20 10060412 . G . . END=10060422 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10060423 . T . . END=10060423 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1083 +20 10060424 . A . . END=10060438 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10060439 . C . . END=10060439 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1185 +20 10060440 . C . . END=10060448 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,111,1665 +20 10060449 . C . . END=10060449 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1236 +20 10060450 . A . . END=10060453 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +20 10060454 . C . . END=10060454 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,1148 +20 10060455 . C . . END=10060461 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,111,1174 +20 10060462 . C . . END=10060462 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1142 +20 10060463 . T . . END=10060468 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,105,1170 +20 10060469 . T . . END=10060469 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1136 +20 10060470 . T . . END=10060868 GT:DP:GQ:MIN_DP:PL 0/0:51:99:39:0,105,1177 +20 10060869 . A . . END=10060869 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1347 +20 10060870 . A . . END=10061081 GT:DP:GQ:MIN_DP:PL 0/0:55:99:44:0,117,1715 +20 10061082 . A . . END=10061082 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1314 +20 10061083 . A . . END=10061095 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,99,1485 +20 10061096 . T . . END=10061096 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 +20 10061097 . C . . END=10061100 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1485 +20 10061101 . G . . END=10061103 GT:DP:GQ:MIN_DP:PL 0/0:37:95:36:0,95,1085 +20 10061104 . A . . END=10061104 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1125 +20 10061105 . G . . END=10061105 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10061106 . C . . END=10061106 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1070 +20 10061107 . A . . END=10061110 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1133 +20 10061111 . T . . END=10061111 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1130 +20 10061112 . A . . END=10061125 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1161 +20 10061126 . A . . END=10061126 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1193 +20 10061127 . C . . END=10061191 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,99,1289 +20 10061192 . A . . END=10061192 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1441 +20 10061193 . A . . END=10061246 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,105,1357 +20 10061247 . T . . END=10061247 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1160 +20 10061248 . C . . END=10061251 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10061252 . A . . END=10061257 GT:DP:GQ:MIN_DP:PL 0/0:39:96:37:0,96,1440 +20 10061258 . A . . END=10061258 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1059 +20 10061259 . T . . END=10061262 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10061263 . A . . END=10061274 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,954 +20 10061275 . C . . END=10061275 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,946 +20 10061276 . T . . END=10061276 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10061277 . A . . END=10061286 GT:DP:GQ:MIN_DP:PL 0/0:33:81:31:0,81,1215 +20 10061287 . A . . END=10061288 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,967 +20 10061289 . A . . END=10061289 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,907 +20 10061290 . C . . END=10061290 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10061291 . C . . END=10061293 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10061294 . C . . END=10061297 GT:DP:GQ:MIN_DP:PL 0/0:36:92:35:0,92,1112 +20 10061298 . T . . END=10061300 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10061301 . A . . END=10061301 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1103 +20 10061302 . T . . END=10061302 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1140 +20 10061303 . A . . END=10061303 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10061304 . T . . END=10061304 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1163 +20 10061305 . G . . END=10061306 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10061307 . A . . END=10061307 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1090 +20 10061308 . A . . END=10061308 GT:DP:GQ:MIN_DP:PL 0/0:38:77:38:0,77,1077 +20 10061309 . A . . END=10061504 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,100,1071 +20 10061505 . T . . END=10061506 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10061507 . T . . END=10061511 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1485 +20 10061512 . G . . END=10061527 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 +20 10061528 . C . . END=10061528 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,930 +20 10061529 . C . . END=10061534 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10061535 . C . . END=10061545 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1056 +20 10061546 . C . . END=10061546 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1119 +20 10061547 . C . . END=10061556 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10061557 . T . . END=10061557 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1106 +20 10061558 . C . . END=10061569 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10061570 . A . . END=10061570 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10061571 . A . . END=10061572 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10061573 . A . . END=10061578 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10061579 . T C, 362.77 . BaseQRankSum=0.610;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=0.844 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:391,0,454,442,499,942:7,10,7,8 +20 10061580 . C . . END=10061590 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10061591 . T . . END=10061591 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,1004 +20 10061592 . G . . END=10061594 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,945 +20 10061595 . G . . END=10061595 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,915 +20 10061596 . C . . END=10061599 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10061600 . C . . END=10061603 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10061604 . C . . END=10061607 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10061608 . G . . END=10061609 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1029 +20 10061610 . A . . END=10061610 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1011 +20 10061611 . C . . END=10061616 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1078 +20 10061617 . C . . END=10061617 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1016 +20 10061618 . A . . END=10061621 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1065 +20 10061622 . G . . END=10061622 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1061 +20 10061623 . G . . END=10061625 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10061626 . G . . END=10061626 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10061627 . G . . END=10061627 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1080 +20 10061628 . T . . END=10061628 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10061629 . C . . END=10061629 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1035 +20 10061630 . C . . END=10061631 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10061632 . C T, 1077.77 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1106,102,0,1106,102,1106:0,0,18,16 +20 10061633 . T . . END=10061633 GT:DP:GQ:MIN_DP:PL 0/0:35:48:35:0,48,999 +20 10061634 . G . . END=10061634 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10061635 . A . . END=10061635 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1076 +20 10061636 . G . . END=10061637 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10061638 . C . . END=10061638 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1030 +20 10061639 . T . . END=10061644 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10061645 . A . . END=10061659 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,992 +20 10061660 . C . . END=10061660 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,898 +20 10061661 . A . . END=10061665 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10061666 . C . . END=10061667 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10061668 . T . . END=10061673 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10061674 . A . . END=10061684 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10061685 . A . . END=10061691 GT:DP:GQ:MIN_DP:PL 0/0:34:84:32:0,84,1260 +20 10061692 . C . . END=10061694 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10061695 . T . . END=10061699 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,997 +20 10061700 . T . . END=10061700 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10061701 . T . . END=10061701 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10061702 . C . . END=10061703 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10061704 . G . . END=10061704 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10061705 . A . . END=10061710 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10061711 . A . . END=10061711 GT:DP:GQ:MIN_DP:PL 0/0:32:65:32:0,65,906 +20 10061712 . A . . END=10061722 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,942 +20 10061723 . A . . END=10061723 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,987 +20 10061724 . C . . END=10061724 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,942 +20 10061725 . T . . END=10061725 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,982 +20 10061726 . G . . END=10061728 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10061729 . A . . END=10061729 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1031 +20 10061730 . G . . END=10061730 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10061731 . G . . END=10061739 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1047 +20 10061740 . T . . END=10061740 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,920 +20 10061741 . G . . END=10061750 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,914 +20 10061751 . A . . END=10061751 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,1007 +20 10061752 . A . . END=10061759 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10061760 . A . . END=10061767 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10061768 . C . . END=10061768 GT:DP:GQ:MIN_DP:PL 0/0:35:69:35:0,69,1030 +20 10061769 . A . . END=10061769 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,1060 +20 10061770 . A . . END=10061770 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10061771 . A . . END=10061782 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1085 +20 10061783 . T . . END=10061783 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1097 +20 10061784 . C . . END=10061793 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,100,1051 +20 10061794 . C . . END=10061794 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1155 +20 10061795 . A . . END=10061801 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,106,1171 +20 10061802 . T . . END=10061802 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1247 +20 10061803 . T . . END=10061838 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,104,1122 +20 10061839 . T . . END=10061839 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1187 +20 10061840 . G . . END=10061840 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1124 +20 10061841 . G . . END=10061849 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1174 +20 10061850 . G . . END=10061850 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1114 +20 10061851 . C . . END=10061976 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,100,1133 +20 10061977 . G . . END=10061977 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1140 +20 10061978 . A . . END=10061981 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1299 +20 10061982 . G . . END=10061982 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1236 +20 10061983 . C . . END=10061992 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,106,1218 +20 10061993 . G . . END=10061993 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1130 +20 10061994 . T . . END=10062011 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,116,1309 +20 10062012 . A . . END=10062013 GT:DP:GQ:MIN_DP:PL 0/0:42:96:41:0,96,1252 +20 10062014 . T . . END=10062022 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,114,1268 +20 10062023 . T . . END=10062023 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1280 +20 10062024 . C . . END=10062150 GT:DP:GQ:MIN_DP:PL 0/0:54:99:42:0,99,1255 +20 10062151 . A G, 377.77 . BaseQRankSum=-1.656;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=212400,59;ReadPosRankSum=-0.613 GT:AD:DP:GQ:PL:SB 0/1:38,19,0:57:99:406,0,1012,520,1069,1588:18,20,9,10 +20 10062152 . T . . END=10062272 GT:DP:GQ:MIN_DP:PL 0/0:57:99:48:0,120,1800 +20 10062273 . C . . END=10062273 GT:DP:GQ:MIN_DP:PL 0/0:49:96:49:0,96,1419 +20 10062274 . C . . END=10062328 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,101,1340 +20 10062329 . T C, 591.77 . BaseQRankSum=-2.037;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=0.337 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:620,0,364,665,438,1103:4,11,13,12 +20 10062330 . T . . END=10062400 GT:DP:GQ:MIN_DP:PL 0/0:46:99:39:0,107,1300 +20 10062401 . T . . END=10062401 GT:DP:GQ:MIN_DP:PL 0/0:44:95:44:0,95,1333 +20 10062402 . C . . END=10062440 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,100,1278 +20 10062441 . C . . END=10062441 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1236 +20 10062442 . C . . END=10062530 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,104,1224 +20 10062531 . A G, 284.77 . BaseQRankSum=-0.252;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=0.447 GT:AD:DP:GQ:PL:SB 0/1:29,15,0:44:99:313,0,725,400,770,1169:12,17,4,11 +20 10062532 . T . . END=10062695 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,111,1297 +20 10062696 . T C, 639.77 . BaseQRankSum=0.953;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=169200,47;ReadPosRankSum=-1.579 GT:AD:DP:GQ:PL:SB 0/1:18,27,0:45:99:668,0,404,722,484,1205:11,7,16,11 +20 10062697 . C . . END=10062772 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,102,1482 +20 10062773 . A . . END=10062773 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1197 +20 10062774 . C . . END=10062873 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1206 +20 10062874 . T . . END=10062874 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1199 +20 10062875 . T . . END=10062884 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10062885 . C . . END=10062885 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1060 +20 10062886 . A . . END=10062901 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1043 +20 10062902 . A . . END=10062907 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10062908 . G . . END=10062911 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +20 10062912 . A . . END=10062920 GT:DP:GQ:MIN_DP:PL 0/0:33:72:31:0,72,1080 +20 10062921 . G . . END=10062921 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,1035 +20 10062922 . T C, 888.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:92:917,92,0,917,92,917:0,0,18,13 +20 10062923 . G . . END=10062924 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,990 +20 10062925 . G . . END=10062925 GT:DP:GQ:MIN_DP:PL 0/0:31:57:31:0,57,855 +20 10062926 . A . . END=10062928 GT:DP:GQ:MIN_DP:PL 0/0:31:51:31:0,51,765 +20 10062929 . C . . END=10062929 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,720 +20 10062930 . T . . END=10062931 GT:DP:GQ:MIN_DP:PL 0/0:31:45:30:0,45,675 +20 10062932 . T . . END=10062932 GT:DP:GQ:MIN_DP:PL 0/0:30:36:30:0,36,540 +20 10062933 . C . . END=10062934 GT:DP:GQ:MIN_DP:PL 0/0:31:33:30:0,33,495 +20 10062935 . CA C, 100.73 . BaseQRankSum=-0.218;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.714;RAW_MQandDP=117800,32;ReadPosRankSum=-0.089 GT:AD:DP:GQ:PL:SB 0/1:13,10,0:23:99:138,0,197,177,227,404:7,6,8,2 +20 10062937 . A . . END=10062937 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,653 +20 10062938 . A . . END=10062954 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1272 +20 10062955 . A . . END=10062955 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1208 +20 10062956 . T . . END=10062991 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1052 +20 10062992 . T . . END=10062992 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1170 +20 10062993 . G . . END=10062999 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,101,1176 +20 10063000 . A . . END=10063000 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1199 +20 10063001 . T . . END=10063018 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,106,1217 +20 10063019 . T . . END=10063019 GT:DP:GQ:MIN_DP:PL 0/0:44:80:44:0,80,1244 +20 10063020 . C . . END=10063087 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,102,1234 +20 10063088 . G . . END=10063088 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1115 +20 10063089 . T . . END=10063090 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1147 +20 10063091 . C . . END=10063101 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1080 +20 10063102 . T . . END=10063104 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +20 10063105 . G . . END=10063105 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,979 +20 10063106 . A . . END=10063113 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10063114 . T . . END=10063116 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10063117 . T . . END=10063117 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1021 +20 10063118 . C . . END=10063119 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10063120 . C . . END=10063122 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10063123 . T . . END=10063125 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10063126 . T . . END=10063126 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1095 +20 10063127 . T . . END=10063127 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10063128 . A . . END=10063130 GT:DP:GQ:MIN_DP:PL 0/0:36:87:34:0,87,1305 +20 10063131 . C . . END=10063132 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10063133 . G . . END=10063146 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,969 +20 10063147 . A . . END=10063163 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,982 +20 10063164 . T . . END=10063164 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10063165 . G . . END=10063168 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10063169 . G . . END=10063170 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1025 +20 10063171 . G . . END=10063171 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1008 +20 10063172 . G . . END=10063174 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1064 +20 10063175 . T . . END=10063175 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1073 +20 10063176 . C . . END=10063179 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1061 +20 10063180 . A . . END=10063180 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1076 +20 10063181 . A . . END=10063182 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1104 +20 10063183 . G . . END=10063183 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1078 +20 10063184 . A . . END=10063199 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10063200 . A . . END=10063200 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1126 +20 10063201 . A . . END=10063201 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1177 +20 10063202 . G . . END=10063202 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1153 +20 10063203 . G . . END=10063203 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10063204 . A . . END=10063204 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1088 +20 10063205 . A . . END=10063206 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +20 10063207 . G . . END=10063207 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1137 +20 10063208 . G . . END=10063269 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,99,1151 +20 10063270 . C . . END=10063270 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1139 +20 10063271 . T . . END=10063299 GT:DP:GQ:MIN_DP:PL 0/0:39:99:33:0,99,1012 +20 10063300 . A . . END=10063300 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,994 +20 10063301 . A . . END=10063301 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1033 +20 10063302 . C . . END=10063302 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1008 +20 10063303 . A . . END=10063309 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1065 +20 10063310 . C . . END=10063310 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10063311 . C . . END=10063351 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1114 +20 10063352 . T . . END=10063352 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1230 +20 10063353 . T . . END=10063357 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10063358 . C . . END=10063358 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1062 +20 10063359 . T . . END=10063360 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10063361 . G . . END=10063366 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10063367 . T . . END=10063369 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1010 +20 10063370 . T . . END=10063370 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1011 +20 10063371 . T . . END=10063374 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +20 10063375 . A . . END=10063376 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1062 +20 10063377 . T . . END=10063390 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,952 +20 10063391 . T . . END=10063391 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,870 +20 10063392 . T . . END=10063394 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,858 +20 10063395 . A . . END=10063397 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10063398 . T . . END=10063398 GT:DP:GQ:MIN_DP:PL 0/0:30:70:30:0,70,858 +20 10063399 . G . . END=10063401 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10063402 . T . . END=10063403 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10063404 . T . . END=10063404 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,959 +20 10063405 . G . . END=10063407 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10063408 . A . . END=10063408 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,982 +20 10063409 . A . . END=10063409 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10063410 . T . . END=10063410 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,998 +20 10063411 . G . . END=10063417 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10063418 . C . . END=10063418 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,918 +20 10063419 . T . . END=10063419 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10063420 . C . . END=10063422 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10063423 . T . . END=10063423 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1063 +20 10063424 . C . . END=10063425 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10063426 . A . . END=10063426 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1044 +20 10063427 . T . . END=10063427 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,981 +20 10063428 . T . . END=10063432 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10063433 . T . . END=10063435 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,942 +20 10063436 . A . . END=10063436 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,995 +20 10063437 . T . . END=10063442 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,939 +20 10063443 . A . . END=10063444 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10063445 . C . . END=10063452 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,957 +20 10063453 . T . . END=10063453 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10063454 . C . . END=10063454 GT:DP:GQ:MIN_DP:PL 0/0:35:57:35:0,57,993 +20 10063455 . T . . END=10063457 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10063458 . A . . END=10063458 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1079 +20 10063459 . G . . END=10063459 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10063460 . T . . END=10063463 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1072 +20 10063464 . A . . END=10063465 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10063466 . G . . END=10063466 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10063467 . C . . END=10063471 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10063472 . G . . END=10063472 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10063473 . C . . END=10063480 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10063481 . A . . END=10063494 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,981 +20 10063495 . A . . END=10063500 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1048 +20 10063501 . G . . END=10063501 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1014 +20 10063502 . T . . END=10063513 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1112 +20 10063514 . T . . END=10063514 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1242 +20 10063515 . A . . END=10063525 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,100,1227 +20 10063526 . T . . END=10063527 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1209 +20 10063528 . T . . END=10063549 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,110,1259 +20 10063550 . T . . END=10063550 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1167 +20 10063551 . T . . END=10063584 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,108,1125 +20 10063585 . A . . END=10063585 GT:DP:GQ:MIN_DP:PL 0/0:42:79:42:0,79,1193 +20 10063586 . A . . END=10063666 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1136 +20 10063667 . G . . END=10063667 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1086 +20 10063668 . C . . END=10063671 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10063672 . T . . END=10063674 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10063675 . C . . END=10063676 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10063677 . T . . END=10063677 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1066 +20 10063678 . G . . END=10063679 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10063680 . G . . END=10063680 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1061 +20 10063681 . C . . END=10063723 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,101,1079 +20 10063724 . A . . END=10063724 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1244 +20 10063725 . A . . END=10063730 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,105,1575 +20 10063731 . T . . END=10063731 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1091 +20 10063732 . C . . END=10063737 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10063738 . C . . END=10063741 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10063742 . G . . END=10063742 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1032 +20 10063743 . T . . END=10063743 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10063744 . G . . END=10063745 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10063746 . A . . END=10063755 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10063756 . T . . END=10063756 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10063757 . T . . END=10063757 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,955 +20 10063758 . T . . END=10063759 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10063760 . G . . END=10063763 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10063764 . T . . END=10063768 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10063769 . G . . END=10063789 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,773 +20 10063790 . C . . END=10063792 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10063793 . C . . END=10063794 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,843 +20 10063795 . T . . END=10063797 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10063798 . A . . END=10063800 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1057 +20 10063801 . A . . END=10063803 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10063804 . A . . END=10063804 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,944 +20 10063805 . A . . END=10063808 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1040 +20 10063809 . G . . END=10063809 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,989 +20 10063810 . A . . END=10063810 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10063811 . G . . END=10063823 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1485 +20 10063824 . T . . END=10063824 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1243 +20 10063825 . T . . END=10064065 GT:DP:GQ:MIN_DP:PL 0/0:47:99:36:0,99,1122 +20 10064066 . T . . END=10064066 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1204 +20 10064067 . G . . END=10064067 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1119 +20 10064068 . A . . END=10064090 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1179 +20 10064091 . G . . END=10064091 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1137 +20 10064092 . A . . END=10064096 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1665 +20 10064097 . G . . END=10064097 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1182 +20 10064098 . A . . END=10064100 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10064101 . T . . END=10064101 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1226 +20 10064102 . T . . END=10064103 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,111,1167 +20 10064104 . C . . END=10064104 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1157 +20 10064105 . A . . END=10064106 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,109,1180 +20 10064107 . C . . END=10064107 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1132 +20 10064108 . T . . END=10064114 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,101,1300 +20 10064115 . T . . END=10064115 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1226 +20 10064116 . G . . END=10064135 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1123 +20 10064136 . C . . END=10064136 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1042 +20 10064137 . C . . END=10064260 GT:DP:GQ:MIN_DP:PL 0/0:49:99:39:0,114,1203 +20 10064261 . T G, 543.77 . BaseQRankSum=0.993;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=172800,48;ReadPosRankSum=-1.260 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:572,0,499,638,568,1205:13,9,15,8 +20 10064262 . A . . END=10064305 GT:DP:GQ:MIN_DP:PL 0/0:52:99:49:0,120,1800 +20 10064306 . T A, 1482.77 . DP=48;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=172800,48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1511,144,0,1511,144,1511:0,0,27,21 +20 10064307 . A . . END=10064450 GT:DP:GQ:MIN_DP:PL 0/0:50:99:46:0,120,1800 +20 10064451 . G . . END=10064451 GT:DP:GQ:MIN_DP:PL 0/0:48:98:48:0,98,1355 +20 10064452 . T . . END=10064528 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,108,1310 +20 10064529 . A G, 1020.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1049,115,0,1049,115,1049:0,0,22,17 +20 10064530 . G . . END=10064770 GT:DP:GQ:MIN_DP:PL 0/0:50:99:38:0,99,1209 +20 10064771 . C . . END=10064781 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10064782 . A . . END=10064782 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10064783 . A . . END=10064800 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,911 +20 10064801 . C . . END=10064802 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,982 +20 10064803 . A . . END=10064806 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10064807 . C . . END=10064810 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10064811 . G . . END=10064811 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1106 +20 10064812 . G . . END=10065310 GT:DP:GQ:MIN_DP:PL 0/0:47:99:35:0,99,1101 +20 10065311 . A . . END=10065311 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1185 +20 10065312 . T . . END=10065323 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1117 +20 10065324 . A . . END=10065324 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1074 +20 10065325 . G . . END=10065325 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1106 +20 10065326 . G . . END=10065326 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1136 +20 10065327 . A . . END=10065328 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10065329 . G . . END=10065329 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1136 +20 10065330 . T . . END=10065332 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1162 +20 10065333 . T . . END=10065333 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1126 +20 10065334 . G . . END=10065336 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,101,1055 +20 10065337 . C . . END=10065337 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1060 +20 10065338 . T . . END=10065338 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,100,1130 +20 10065339 . G . . END=10065339 GT:DP:GQ:MIN_DP:PL 0/0:37:65:37:0,65,1000 +20 10065340 . A . . END=10065340 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1001 +20 10065341 . C . . END=10065341 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10065342 . C . . END=10065342 GT:DP:GQ:MIN_DP:PL 0/0:37:65:37:0,65,1021 +20 10065343 . C . . END=10065343 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10065344 . T . . END=10065344 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1084 +20 10065345 . A . . END=10065345 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10065346 . C . . END=10065349 GT:DP:GQ:MIN_DP:PL 0/0:35:73:33:0,73,956 +20 10065350 . C . . END=10065350 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10065351 . A . . END=10065353 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,993 +20 10065354 . G . . END=10065354 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10065355 . A . . END=10065355 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,984 +20 10065356 . A . . END=10065358 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,942 +20 10065359 . G . . END=10065359 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,952 +20 10065360 . C . . END=10065361 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10065362 . A . . END=10065362 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,1002 +20 10065363 . T . . END=10065363 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,960 +20 10065364 . C . . END=10065364 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1008 +20 10065365 . C . . END=10065365 GT:DP:GQ:MIN_DP:PL 0/0:33:47:33:0,47,920 +20 10065366 . C . . END=10065366 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,983 +20 10065367 . T . . END=10065372 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10065373 . C . . END=10065382 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1010 +20 10065383 . T G, 313.77 . BaseQRankSum=-4.436;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=122400,34;ReadPosRankSum=-0.766 GT:AD:DP:GQ:PL:SB 0/1:15,16,0:31:99:342,0,417,387,464,851:9,6,9,7 +20 10065384 . T . . END=10065393 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10065394 . C . . END=10065400 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1044 +20 10065401 . T . . END=10065433 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1132 +20 10065434 . A . . END=10065434 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1060 +20 10065435 . A . . END=10065455 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,103,1081 +20 10065456 . A . . END=10065456 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1228 +20 10065457 . G . . END=10065459 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10065460 . A . . END=10065460 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1132 +20 10065461 . C . . END=10065470 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10065471 . G . . END=10065471 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1063 +20 10065472 . T . . END=10065480 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1151 +20 10065481 . A . . END=10065481 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1132 +20 10065482 . T . . END=10065483 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1153 +20 10065484 . C . . END=10065484 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1141 +20 10065485 . T . . END=10065486 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1163 +20 10065487 . A . . END=10065487 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1147 +20 10065488 . T . . END=10065490 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,107,1099 +20 10065491 . T . . END=10065491 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1126 +20 10065492 . T . . END=10065492 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10065493 . A . . END=10065493 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1078 +20 10065494 . A . . END=10065494 GT:DP:GQ:MIN_DP:PL 0/0:35:32:35:0,32,925 +20 10065495 . A . . END=10065495 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1035 +20 10065496 . C . . END=10065502 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1141 +20 10065503 . G . . END=10065503 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20 10065504 . A . . END=10065505 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1059 +20 10065506 . A . . END=10065506 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10065507 . T . . END=10065509 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 +20 10065510 . G . . END=10065510 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1016 +20 10065511 . G . . END=10065514 GT:DP:GQ:MIN_DP:PL 0/0:34:84:31:0,84,1260 +20 10065515 . G . . END=10065515 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,893 +20 10065516 . G . . END=10065516 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10065517 . T C, 244.77 . BaseQRankSum=0.690;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=111600,31;ReadPosRankSum=-1.828 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:18,12,0:30:99:0|1:10065517_T_C:273,0,706,327,741,1068:9,9,4,8 +20 10065518 . T . . END=10065520 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10065521 . T . . END=10065521 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1010 +20 10065522 . T . . END=10065524 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10065525 . G A, 452.77 . BaseQRankSum=0.814;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=100800,28;ReadPosRankSum=0.551 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:10,17,0:27:99:1|0:10065517_T_C:481,0,391,514,442,956:4,6,9,8 +20 10065526 . C . . END=10065526 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10065527 . A . . END=10065533 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10065534 . C . . END=10065543 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,1080 +20 10065544 . A . . END=10065547 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10065548 . G . . END=10065548 GT:DP:GQ:MIN_DP:PL 0/0:28:65:28:0,65,775 +20 10065549 . A . . END=10065549 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,805 +20 10065550 . C . . END=10065550 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,855 +20 10065551 . T . . END=10065562 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10065563 . T . . END=10065564 GT:DP:GQ:MIN_DP:PL 0/0:29:71:28:0,71,865 +20 10065565 . T . . END=10065572 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,875 +20 10065573 . A . . END=10065575 GT:DP:GQ:MIN_DP:PL 0/0:31:78:29:0,78,1170 +20 10065576 . C . . END=10065580 GT:DP:GQ:MIN_DP:PL 0/0:34:84:32:0,84,1260 +20 10065581 . A . . END=10065584 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10065585 . G . . END=10065585 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,882 +20 10065586 . C . . END=10065604 GT:DP:GQ:MIN_DP:PL 0/0:32:82:29:0,82,948 +20 10065605 . A . . END=10065614 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,951 +20 10065615 . G . . END=10065617 GT:DP:GQ:MIN_DP:PL 0/0:32:61:31:0,61,902 +20 10065618 . T . . END=10065619 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10065620 . C . . END=10065620 GT:DP:GQ:MIN_DP:PL 0/0:32:46:32:0,46,875 +20 10065621 . T . . END=10065623 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,978 +20 10065624 . A . . END=10065624 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,937 +20 10065625 . A . . END=10065626 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,958 +20 10065627 . A . . END=10065627 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,926 +20 10065628 . C . . END=10065628 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,972 +20 10065629 . A . . END=10065629 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,898 +20 10065630 . A . . END=10065635 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,948 +20 10065636 . A . . END=10065637 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1035 +20 10065638 . T . . END=10065644 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10065645 . C . . END=10065645 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,993 +20 10065646 . C . . END=10065652 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10065653 . G . . END=10065653 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,901 +20 10065654 . T . . END=10065654 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10065655 . A . . END=10065663 GT:DP:GQ:MIN_DP:PL 0/0:32:84:29:0,84,932 +20 10065664 . C . . END=10065669 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,990 +20 10065670 . C . . END=10065670 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,965 +20 10065671 . T . . END=10065676 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10065677 . C . . END=10065677 GT:DP:GQ:MIN_DP:PL 0/0:32:70:32:0,70,930 +20 10065678 . T . . END=10065683 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,912 +20 10065684 . T . . END=10065686 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10065687 . A . . END=10065687 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10065688 . T . . END=10065694 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1017 +20 10065695 . A . . END=10065695 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10065696 . G . . END=10065698 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10065699 . T . . END=10065708 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,836 +20 10065709 . G . . END=10065709 GT:DP:GQ:MIN_DP:PL 0/0:26:61:26:0,61,769 +20 10065710 . A . . END=10065710 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10065711 . A . . END=10065715 GT:DP:GQ:MIN_DP:PL 0/0:25:64:24:0,64,792 +20 10065716 . T . . END=10065716 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20 10065717 . C . . END=10065722 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,66,779 +20 10065723 . C . . END=10065723 GT:DP:GQ:MIN_DP:PL 0/0:26:46:26:0,46,780 +20 10065724 . C . . END=10065727 GT:DP:GQ:MIN_DP:PL 0/0:26:66:24:0,66,990 +20 10065728 . A . . END=10065728 GT:DP:GQ:MIN_DP:PL 0/0:24:26:24:0,26,583 +20 10065729 . T . . END=10065737 GT:DP:GQ:MIN_DP:PL 0/0:24:61:21:0,61,641 +20 10065738 . G . . END=10065739 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,665 +20 10065740 . T . . END=10065740 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +20 10065741 . A . . END=10065741 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,735 +20 10065742 . G . . END=10065742 GT:DP:GQ:MIN_DP:PL 0/0:24:39:24:0,39,649 +20 10065743 . G . . END=10065743 GT:DP:GQ:MIN_DP:PL 0/0:23:66:23:0,66,990 +20 10065744 . G . . END=10065744 GT:DP:GQ:MIN_DP:PL 0/0:23:52:23:0,52,661 +20 10065745 . T . . END=10065745 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 +20 10065746 . G . . END=10065746 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,675 +20 10065747 . G . . END=10065748 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,855 +20 10065749 . C . . END=10065749 GT:DP:GQ:MIN_DP:PL 0/0:22:51:22:0,51,635 +20 10065750 . A . . END=10065750 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,900 +20 10065751 . T . . END=10065751 GT:DP:GQ:MIN_DP:PL 0/0:23:58:23:0,58,668 +20 10065752 . A . . END=10065752 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +20 10065753 . T . . END=10065753 GT:DP:GQ:MIN_DP:PL 0/0:23:58:23:0,58,687 +20 10065754 . G . . END=10065754 GT:DP:GQ:MIN_DP:PL 0/0:22:49:22:0,49,624 +20 10065755 . A . . END=10065755 GT:DP:GQ:MIN_DP:PL 0/0:22:16:22:0,16,531 +20 10065756 . T . . END=10065758 GT:DP:GQ:MIN_DP:PL 0/0:22:60:20:0,60,637 +20 10065759 . A . . END=10065759 GT:DP:GQ:MIN_DP:PL 0/0:23:52:23:0,52,677 +20 10065760 . T . . END=10065761 GT:DP:GQ:MIN_DP:PL 0/0:23:66:23:0,66,990 +20 10065762 . T . . END=10065772 GT:DP:GQ:MIN_DP:PL 0/0:28:70:24:0,70,754 +20 10065773 . A . . END=10065774 GT:DP:GQ:MIN_DP:PL 0/0:32:60:31:0,60,900 +20 10065775 . A . . END=10065775 GT:DP:GQ:MIN_DP:PL 0/0:32:54:32:0,54,810 +20 10065776 . C . . END=10065776 GT:DP:GQ:MIN_DP:PL 0/0:34:32:34:0,32,849 +20 10065777 . A . . END=10065777 GT:DP:GQ:MIN_DP:PL 0/0:35:39:35:0,39,585 +20 10065778 . T . . END=10065778 GT:DP:GQ:MIN_DP:PL 0/0:42:42:42:0,42,630 +20 10065779 . G GTT,GTTT, 649.73 . DP=26;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;RAW_MQandDP=91481,26 GT:AD:DP:GQ:PL:SB 1/2:0,7,6,0:13:50:687,131,50,154,0,87,494,126,151,432:0,0,7,6 +20 10065780 . T . . END=10065780 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,893 +20 10065781 . T . . END=10065802 GT:DP:GQ:MIN_DP:PL 0/0:45:60:44:0,60,900 +20 10065803 . G . . END=10065807 GT:DP:GQ:MIN_DP:PL 0/0:30:0:28:0,0,0 +20 10065808 . G . . END=10065808 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,735 +20 10065809 . G . . END=10065809 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,945 +20 10065810 . A . . END=10065812 GT:DP:GQ:MIN_DP:PL 0/0:26:0:24:0,0,278 +20 10065813 . C . . END=10065813 GT:DP:GQ:MIN_DP:PL 0/0:22:4:22:0,4,493 +20 10065814 . C . . END=10065814 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,528 +20 10065815 . T . . END=10065815 GT:DP:GQ:MIN_DP:PL 0/0:24:14:24:0,14,587 +20 10065816 . G . . END=10065817 GT:DP:GQ:MIN_DP:PL 0/0:26:0:25:0,0,483 +20 10065818 . A . . END=10065818 GT:DP:GQ:MIN_DP:PL 0/0:22:19:22:0,19,562 +20 10065819 . A . . END=10065819 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,585 +20 10065820 . A . . END=10065820 GT:DP:GQ:MIN_DP:PL 0/0:24:38:24:0,38,676 +20 10065821 . T . . END=10065821 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,547 +20 10065822 . A . . END=10065822 GT:DP:GQ:MIN_DP:PL 0/0:24:38:24:0,38,657 +20 10065823 . C . . END=10065823 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,568 +20 10065824 . T . . END=10065824 GT:DP:GQ:MIN_DP:PL 0/0:26:47:26:0,47,733 +20 10065825 . T . . END=10065825 GT:DP:GQ:MIN_DP:PL 0/0:25:42:25:0,42,725 +20 10065826 . T . . END=10065826 GT:DP:GQ:MIN_DP:PL 0/0:25:54:25:0,54,810 +20 10065827 . T . . END=10065827 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,814 +20 10065828 . G . . END=10065832 GT:DP:GQ:MIN_DP:PL 0/0:23:0:22:0,0,417 +20 10065833 . C . . END=10065833 GT:DP:GQ:MIN_DP:PL 0/0:24:25:24:0,25,632 +20 10065834 . A . . END=10065834 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,636 +20 10065835 . T . . END=10065835 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,900 +20 10065836 . G . . END=10065836 GT:DP:GQ:MIN_DP:PL 0/0:27:25:27:0,25,715 +20 10065837 . A . . END=10065837 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,654 +20 10065838 . A . . END=10065838 GT:DP:GQ:MIN_DP:PL 0/0:27:38:27:0,38,732 +20 10065839 . A . . END=10065839 GT:DP:GQ:MIN_DP:PL 0/0:27:41:27:0,41,732 +20 10065840 . A . . END=10065840 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,877 +20 10065841 . A . . END=10065841 GT:DP:GQ:MIN_DP:PL 0/0:30:44:30:0,44,854 +20 10065842 . A . . END=10065842 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,880 +20 10065843 . G . . END=10065844 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,605 +20 10065845 . A . . END=10065845 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,818 +20 10065846 . G . . END=10065846 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,623 +20 10065847 . A . . END=10065847 GT:DP:GQ:MIN_DP:PL 0/0:27:21:27:0,21,696 +20 10065848 . C . . END=10065848 GT:DP:GQ:MIN_DP:PL 0/0:29:46:29:0,46,765 +20 10065849 . T . . END=10065849 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,691 +20 10065850 . T . . END=10065850 GT:DP:GQ:MIN_DP:PL 0/0:28:2:28:0,2,706 +20 10065851 . T . . END=10065851 GT:DP:GQ:MIN_DP:PL 0/0:28:51:28:0,51,813 +20 10065852 . T . . END=10065852 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,823 +20 10065853 . G . . END=10065853 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,643 +20 10065854 . T . . END=10065854 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,828 +20 10065855 . T . . END=10065855 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20 10065856 . A . . END=10065857 GT:DP:GQ:MIN_DP:PL 0/0:30:0:29:0,0,670 +20 10065858 . T . . END=10065858 GT:DP:GQ:MIN_DP:PL 0/0:29:43:29:0,43,832 +20 10065859 . G . . END=10065859 GT:DP:GQ:MIN_DP:PL 0/0:31:18:31:0,18,833 +20 10065860 . C . . END=10065860 GT:DP:GQ:MIN_DP:PL 0/0:32:33:32:0,33,907 +20 10065861 . T . . END=10065863 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,920 +20 10065864 . T . . END=10065864 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10065865 . C . . END=10065870 GT:DP:GQ:MIN_DP:PL 0/0:32:60:31:0,60,943 +20 10065871 . T . . END=10065872 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10065873 . T . . END=10065874 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,966 +20 10065875 . C . . END=10065877 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10065878 . G . . END=10065878 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,1034 +20 10065879 . C . . END=10065879 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1034 +20 10065880 . C . . END=10065880 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10065881 . T . . END=10065882 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1137 +20 10065883 . G . . END=10065883 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10065884 . A . . END=10065884 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1146 +20 10065885 . A . . END=10065887 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1145 +20 10065888 . C . . END=10065905 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10065906 . C . . END=10065906 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1021 +20 10065907 . T . . END=10066020 GT:DP:GQ:MIN_DP:PL 0/0:45:99:36:0,101,1201 +20 10066021 . G . . END=10066021 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1245 +20 10066022 . T . . END=10066106 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,100,1147 +20 10066107 . T . . END=10066107 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1159 +20 10066108 . G . . END=10066123 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1151 +20 10066124 . G . . END=10066124 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1121 +20 10066125 . A . . END=10066152 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1102 +20 10066153 . G . . END=10066153 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1083 +20 10066154 . A . . END=10066162 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1016 +20 10066163 . A . . END=10066163 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1033 +20 10066164 . T . . END=10066164 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1017 +20 10066165 . T . . END=10066168 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10066169 . A . . END=10066169 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1038 +20 10066170 . G . . END=10066170 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,997 +20 10066171 . T . . END=10066173 GT:DP:GQ:MIN_DP:PL 0/0:34:91:32:0,91,970 +20 10066174 . G . . END=10066174 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,920 +20 10066175 . G . . END=10066175 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10066176 . C . . END=10066176 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1050 +20 10066177 . T . . END=10066178 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10066179 . G . . END=10066179 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1021 +20 10066180 . G . . END=10066183 GT:DP:GQ:MIN_DP:PL 0/0:36:90:30:0,90,940 +20 10066184 . T . . END=10066184 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1015 +20 10066185 . G . . END=10066192 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10066193 . C . . END=10066193 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,953 +20 10066194 . T . . END=10066205 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,916 +20 10066206 . A . . END=10066206 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,973 +20 10066207 . A . . END=10066207 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,893 +20 10066208 . A . . END=10066211 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,954 +20 10066212 . G . . END=10066212 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,977 +20 10066213 . G . . END=10066213 GT:DP:GQ:MIN_DP:PL 0/0:34:64:34:0,64,901 +20 10066214 . C . . END=10066234 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,986 +20 10066235 . T . . END=10066251 GT:DP:GQ:MIN_DP:PL 0/0:31:72:25:0,72,848 +20 10066252 . G . . END=10066265 GT:DP:GQ:MIN_DP:PL 0/0:26:63:25:0,63,945 +20 10066266 . G . . END=10066272 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,780 +20 10066273 . G . . END=10066275 GT:DP:GQ:MIN_DP:PL 0/0:27:80:27:0,80,831 +20 10066276 . C . . END=10066276 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,800 +20 10066277 . T . . END=10066281 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,881 +20 10066282 . A . . END=10066282 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,919 +20 10066283 . G . . END=10066285 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,929 +20 10066286 . C . . END=10066286 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,894 +20 10066287 . A . . END=10066287 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10066288 . G . . END=10066290 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,944 +20 10066291 . G . . END=10066296 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10066297 . G . . END=10066297 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,986 +20 10066298 . A . . END=10066298 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,953 +20 10066299 . G . . END=10066307 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,887 +20 10066308 . A . . END=10066308 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,948 +20 10066309 . G . . END=10066309 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,930 +20 10066310 . C . . END=10066310 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,930 +20 10066311 . A . . END=10066311 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10066312 . G . . END=10066313 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,884 +20 10066314 . A . . END=10066317 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,963 +20 10066318 . T . . END=10066318 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,967 +20 10066319 . C . . END=10066340 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,967 +20 10066341 . G . . END=10066341 GT:DP:GQ:MIN_DP:PL 0/0:31:71:31:0,71,872 +20 10066342 . T . . END=10066344 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10066345 . C . . END=10066345 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,950 +20 10066346 . C . . END=10066350 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10066351 . A . . END=10066362 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,879 +20 10066363 . G . . END=10066363 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,780 +20 10066364 . A . . END=10066365 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10066366 . G . . END=10066366 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,865 +20 10066367 . A . . END=10066374 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20 10066375 . C . . END=10066380 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,961 +20 10066381 . T . . END=10066381 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,999 +20 10066382 . C . . END=10066382 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,956 +20 10066383 . T . . END=10066394 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1024 +20 10066395 . T . . END=10066395 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1077 +20 10066396 . G . . END=10066398 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10066399 . C . . END=10066399 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1066 +20 10066400 . T . . END=10066404 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1072 +20 10066405 . A . . END=10066412 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10066413 . A . . END=10066413 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10066414 . A . . END=10066414 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,899 +20 10066415 . A . . END=10066416 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20 10066417 . C . . END=10066417 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10066418 . C . . END=10066428 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10066429 . T . . END=10066429 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10066430 . T . . END=10066435 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10066436 . C . . END=10066442 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10066443 . C . . END=10066443 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,947 +20 10066444 . A . . END=10066444 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10066445 . T . . END=10066448 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1041 +20 10066449 . G . . END=10066449 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,984 +20 10066450 . C . . END=10066450 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,957 +20 10066451 . T . . END=10066451 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,998 +20 10066452 . T . . END=10066458 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10066459 . A . . END=10066459 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,993 +20 10066460 . A . . END=10066462 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20 10066463 . C . . END=10066475 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10066476 . C . . END=10066476 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1151 +20 10066477 . C . . END=10066496 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1119 +20 10066497 . T . . END=10066497 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1230 +20 10066498 . A . . END=10066511 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,103,1139 +20 10066512 . G . . END=10066512 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1249 +20 10066513 . T . . END=10066516 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,114,1710 +20 10066517 . G . . END=10066517 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1169 +20 10066518 . A . . END=10066533 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10066534 . C . . END=10066534 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1224 +20 10066535 . A . . END=10066583 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,107,1313 +20 10066584 . C . . END=10066584 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1219 +20 10066585 . T . . END=10066592 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10066593 . C . . END=10066594 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1104 +20 10066595 . T . . END=10066605 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1171 +20 10066606 . C . . END=10066615 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1091 +20 10066616 . T . . END=10066618 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10066619 . G . . END=10066620 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10066621 . A . . END=10066621 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1078 +20 10066622 . G . . END=10066624 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10066625 . T . . END=10066625 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10066626 . C . . END=10066627 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10066628 . C . . END=10066628 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10066629 . C . . END=10066629 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,979 +20 10066630 . T . . END=10066630 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10066631 . G . . END=10066633 GT:DP:GQ:MIN_DP:PL 0/0:32:78:31:0,78,916 +20 10066634 . G . . END=10066634 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10066635 . A . . END=10066648 GT:DP:GQ:MIN_DP:PL 0/0:30:75:28:0,75,815 +20 10066649 . G . . END=10066649 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10066650 . C . . END=10066650 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,911 +20 10066651 . A . . END=10066652 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10066653 . C . . END=10066653 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,781 +20 10066654 . A . . END=10066657 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10066658 . A . . END=10066670 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10066671 . T . . END=10066672 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10066673 . A . . END=10066682 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10066683 . A . . END=10066683 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10066684 . C . . END=10066687 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10066688 . T . . END=10066688 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,956 +20 10066689 . A . . END=10066689 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,918 +20 10066690 . A . . END=10066690 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10066691 . T . . END=10066691 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10066692 . T . . END=10066692 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1067 +20 10066693 . A . . END=10066708 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1060 +20 10066709 . A . . END=10066709 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1178 +20 10066710 . A . . END=10066710 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +20 10066711 . C . . END=10066711 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1105 +20 10066712 . T . . END=10066726 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1136 +20 10066727 . C . . END=10066727 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1141 +20 10066728 . C . . END=10066731 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1161 +20 10066732 . C . . END=10066732 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1197 +20 10066733 . A . . END=10066737 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1152 +20 10066738 . A . . END=10066738 GT:DP:GQ:MIN_DP:PL 0/0:43:92:43:0,92,1204 +20 10066739 . C . . END=10066740 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,113,1279 +20 10066741 . T . . END=10066741 GT:DP:GQ:MIN_DP:PL 0/0:42:84:42:0,84,1204 +20 10066742 . C . . END=10066852 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,99,1245 +20 10066853 . A . . END=10066853 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1254 +20 10066854 . G . . END=10066884 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1122 +20 10066885 . C . . END=10066885 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1007 +20 10066886 . C . . END=10066916 GT:DP:GQ:MIN_DP:PL 0/0:46:99:37:0,99,1131 +20 10066917 . A . . END=10066917 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1407 +20 10066918 . T . . END=10066961 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1260 +20 10066962 . A . . END=10066962 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1180 +20 10066963 . G . . END=10066963 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10066964 . T . . END=10066964 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1136 +20 10066965 . T . . END=10066968 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10066969 . A . . END=10066969 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1137 +20 10066970 . A . . END=10066972 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10066973 . T . . END=10066973 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10066974 . G . . END=10066978 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10066979 . C . . END=10066981 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1440 +20 10066982 . T . . END=10066989 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10066990 . T . . END=10066993 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1090 +20 10066994 . C . . END=10066994 GT:DP:GQ:MIN_DP:PL 0/0:33:62:33:0,62,949 +20 10066995 . A . . END=10067002 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1005 +20 10067003 . T . . END=10067003 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,1014 +20 10067004 . T . . END=10067007 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10067008 . A . . END=10067011 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1038 +20 10067012 . A . . END=10067015 GT:DP:GQ:MIN_DP:PL 0/0:35:78:33:0,78,1170 +20 10067016 . T . . END=10067016 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1215 +20 10067017 . G . . END=10067017 GT:DP:GQ:MIN_DP:PL 0/0:35:62:35:0,62,981 +20 10067018 . A . . END=10067028 GT:DP:GQ:MIN_DP:PL 0/0:34:80:33:0,80,1011 +20 10067029 . C . . END=10067031 GT:DP:GQ:MIN_DP:PL 0/0:36:78:33:0,78,1170 +20 10067032 . T . . END=10067036 GT:DP:GQ:MIN_DP:PL 0/0:38:60:34:0,60,900 +20 10067037 . C . . END=10067037 GT:DP:GQ:MIN_DP:PL 0/0:37:57:37:0,57,855 +20 10067038 . T . . END=10067038 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,810 +20 10067039 . T . . END=10067040 GT:DP:GQ:MIN_DP:PL 0/0:36:45:35:0,45,675 +20 10067041 . C . . END=10067041 GT:DP:GQ:MIN_DP:PL 0/0:36:42:36:0,42,630 +20 10067042 . A . . END=10067043 GT:DP:GQ:MIN_DP:PL 0/0:33:39:33:0,39,585 +20 10067044 . T . . END=10067044 GT:DP:GQ:MIN_DP:PL 0/0:32:36:32:0,36,540 +20 10067045 . T . . END=10067045 GT:DP:GQ:MIN_DP:PL 0/0:33:33:33:0,33,495 +20 10067046 . T . . END=10067046 GT:DP:GQ:MIN_DP:PL 0/0:33:30:33:0,30,450 +20 10067047 . A . . END=10067048 GT:DP:GQ:MIN_DP:PL 0/0:32:24:30:0,24,360 +20 10067049 . TAAAAAAA T,TAAAA, 533.73 . BaseQRankSum=-0.194;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;MQRankSum=0.000;RAW_MQandDP=106000,30 GT:AD:DP:GQ:PL:SB 1/2:1,8,9,0:18:99:571,324,502,248,0,237,593,443,276,696:0,1,9,8 +20 10067057 . A . . END=10067057 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,485 +20 10067058 . A . . END=10067060 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +20 10067061 . A . . END=10067066 GT:DP:GQ:MIN_DP:PL 0/0:36:81:34:0,81,1215 +20 10067067 . A . . END=10067067 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10067068 . A . . END=10067068 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,1002 +20 10067069 . A . . END=10067071 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10067072 . A . . END=10067072 GT:DP:GQ:MIN_DP:PL 0/0:37:47:37:0,47,1098 +20 10067073 . A . . END=10067073 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1091 +20 10067074 . A . . END=10067074 GT:DP:GQ:MIN_DP:PL 0/0:38:63:38:0,63,1092 +20 10067075 . G . . END=10067075 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10067076 . A . . END=10067076 GT:DP:GQ:MIN_DP:PL 0/0:37:69:37:0,69,1056 +20 10067077 . G . . END=10067077 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1096 +20 10067078 . G . . END=10067079 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10067080 . A . . END=10067080 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1059 +20 10067081 . A . . END=10067082 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10067083 . G . . END=10067083 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1022 +20 10067084 . T . . END=10067089 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10067090 . C A, 940.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:90:969,90,0,969,90,969:0,0,15,15 +20 10067091 . T . . END=10067095 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1063 +20 10067096 . A . . END=10067097 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1036 +20 10067098 . T . . END=10067099 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,993 +20 10067100 . C . . END=10067100 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1013 +20 10067101 . T . . END=10067101 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1016 +20 10067102 . A . . END=10067105 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1072 +20 10067106 . C . . END=10067106 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1085 +20 10067107 . T . . END=10067109 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10067110 . T . . END=10067110 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1082 +20 10067111 . A . . END=10067112 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10067113 . T . . END=10067114 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1078 +20 10067115 . A . . END=10067120 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10067121 . G . . END=10067122 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1049 +20 10067123 . G . . END=10067128 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10067129 . T . . END=10067130 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,897 +20 10067131 . T . . END=10067131 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1018 +20 10067132 . T . . END=10067132 GT:DP:GQ:MIN_DP:PL 0/0:34:43:34:0,43,910 +20 10067133 . A . . END=10067133 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10067134 . C . . END=10067134 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,922 +20 10067135 . A . . END=10067135 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10067136 . C . . END=10067136 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,929 +20 10067137 . T . . END=10067137 GT:DP:GQ:MIN_DP:PL 0/0:34:57:34:0,57,953 +20 10067138 . G . . END=10067141 GT:DP:GQ:MIN_DP:PL 0/0:36:72:35:0,72,965 +20 10067142 . C . . END=10067145 GT:DP:GQ:MIN_DP:PL 0/0:39:80:38:0,80,1032 +20 10067146 . A . . END=10067170 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1066 +20 10067171 . T . . END=10067171 GT:DP:GQ:MIN_DP:PL 0/0:37:68:37:0,68,1035 +20 10067172 . G . . END=10067175 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1111 +20 10067176 . C . . END=10067176 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1089 +20 10067177 . C . . END=10067183 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1148 +20 10067184 . T . . END=10067184 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1089 +20 10067185 . T . . END=10067187 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1164 +20 10067188 . T . . END=10067188 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1102 +20 10067189 . T . . END=10067196 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1133 +20 10067197 . T . . END=10067197 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1144 +20 10067198 . G . . END=10067198 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10067199 . A . . END=10067199 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1165 +20 10067200 . C . . END=10067200 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10067201 . C . . END=10067201 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1140 +20 10067202 . C . . END=10067207 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10067208 . A . . END=10067210 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1068 +20 10067211 . A . . END=10067216 GT:DP:GQ:MIN_DP:PL 0/0:36:84:34:0,84,1260 +20 10067217 . G . . END=10067220 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10067221 . A . . END=10067221 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,923 +20 10067222 . A . . END=10067222 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1007 +20 10067223 . T . . END=10067223 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1006 +20 10067224 . G . . END=10067238 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10067239 . T . . END=10067243 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1010 +20 10067244 . G . . END=10067244 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10067245 . A . . END=10067246 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10067247 . A . . END=10067256 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10067257 . C . . END=10067257 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,974 +20 10067258 . A . . END=10067261 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1020 +20 10067262 . G . . END=10067263 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10067264 . G A, 290.77 . BaseQRankSum=0.369;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=-0.493 GT:AD:DP:GQ:PL:SB 0/1:20,13,0:33:99:319,0,534,379,573,952:8,12,7,6 +20 10067265 . C . . END=10067280 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10067281 . A . . END=10067281 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,985 +20 10067282 . T . . END=10067282 GT:DP:GQ:MIN_DP:PL 0/0:31:59:31:0,59,932 +20 10067283 . T . . END=10067283 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,991 +20 10067284 . G . . END=10067284 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1047 +20 10067285 . G . . END=10067286 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1018 +20 10067287 . A . . END=10067287 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10067288 . A . . END=10067297 GT:DP:GQ:MIN_DP:PL 0/0:33:80:32:0,80,986 +20 10067298 . A . . END=10067299 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,877 +20 10067300 . G . . END=10067300 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,842 +20 10067301 . G . . END=10067304 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10067305 . G . . END=10067309 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10067310 . A . . END=10067310 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1056 +20 10067311 . T . . END=10067318 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1042 +20 10067319 . A . . END=10067319 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1111 +20 10067320 . C . . END=10067320 GT:DP:GQ:MIN_DP:PL 0/0:36:50:36:0,50,969 +20 10067321 . A . . END=10067323 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1116 +20 10067324 . T . . END=10067324 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10067325 . C . . END=10067325 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1059 +20 10067326 . C . . END=10067328 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10067329 . A . . END=10067329 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1077 +20 10067330 . T . . END=10067334 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1060 +20 10067335 . C . . END=10067335 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1040 +20 10067336 . C . . END=10067337 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10067338 . C . . END=10067338 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1066 +20 10067339 . A . . END=10067447 GT:DP:GQ:MIN_DP:PL 0/0:45:99:37:0,102,1107 +20 10067448 . A . . END=10067448 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1399 +20 10067449 . G . . END=10067545 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,100,1191 +20 10067546 . T . . END=10067546 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1105 +20 10067547 . C . . END=10067549 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10067550 . G . . END=10067557 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1081 +20 10067558 . T . . END=10067558 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1040 +20 10067559 . A . . END=10067566 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1111 +20 10067567 . A . . END=10067586 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10067587 . G . . END=10067587 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1053 +20 10067588 . G . . END=10067600 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1485 +20 10067601 . A . . END=10067601 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1182 +20 10067602 . G . . END=10067624 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1165 +20 10067625 . C . . END=10067625 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1169 +20 10067626 . A . . END=10067640 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1485 +20 10067641 . C . . END=10067641 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10067642 . C . . END=10067642 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10067643 . A . . END=10067656 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1045 +20 10067657 . G . . END=10067658 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10067659 . C . . END=10067659 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,941 +20 10067660 . T . . END=10067674 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1049 +20 10067675 . A . . END=10067675 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1064 +20 10067676 . G . . END=10067716 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1083 +20 10067717 . C . . END=10067719 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10067720 . C . . END=10067721 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10067722 . A C, 1156.77 . DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1185,114,0,1185,114,1185:0,0,19,19 +20 10067723 . C . . END=10067728 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10067729 . A . . END=10067730 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10067731 . C . . END=10067752 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20 10067753 . A . . END=10067753 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1106 +20 10067754 . T . . END=10067756 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10067757 . C . . END=10067757 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1125 +20 10067758 . T . . END=10067764 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1117 +20 10067765 . T . . END=10067765 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1086 +20 10067766 . C . . END=10067770 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10067771 . G . . END=10067772 GT:DP:GQ:MIN_DP:PL 0/0:38:92:37:0,92,1052 +20 10067773 . G . . END=10067773 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1035 +20 10067774 . C . . END=10067774 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1052 +20 10067775 . C . . END=10067814 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,102,1044 +20 10067815 . G . . END=10067815 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1201 +20 10067816 . A . . END=10067832 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,106,1099 +20 10067833 . A . . END=10067833 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1234 +20 10067834 . T . . END=10067882 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,111,1301 +20 10067883 . T . . END=10067883 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1282 +20 10067884 . A . . END=10067953 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1132 +20 10067954 . T . . END=10067955 GT:DP:GQ:MIN_DP:PL 0/0:39:90:38:0,90,1124 +20 10067956 . G . . END=10067956 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10067957 . T . . END=10067957 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1107 +20 10067958 . A . . END=10067983 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1120 +20 10067984 . T . . END=10067987 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,974 +20 10067988 . G . . END=10067988 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1041 +20 10067989 . A . . END=10067991 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20 10067992 . C . . END=10067994 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,970 +20 10067995 . T . . END=10067998 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10067999 . G . . END=10067999 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,968 +20 10068000 . G . . END=10068002 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10068003 . G . . END=10068003 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,931 +20 10068004 . A . . END=10068017 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10068018 . T . . END=10068020 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10068021 . A . . END=10068021 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10068022 . A . . END=10068022 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10068023 . A . . END=10068025 GT:DP:GQ:MIN_DP:PL 0/0:34:82:33:0,82,976 +20 10068026 . T . . END=10068026 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1090 +20 10068027 . T . . END=10068028 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1139 +20 10068029 . T . . END=10068029 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1041 +20 10068030 . G . . END=10068033 GT:DP:GQ:MIN_DP:PL 0/0:37:96:35:0,96,1440 +20 10068034 . G . . END=10068034 GT:DP:GQ:MIN_DP:PL 0/0:35:12:35:0,12,845 +20 10068035 . G . . END=10068036 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10068037 . G . . END=10068037 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,988 +20 10068038 . G . . END=10068041 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,953 +20 10068042 . T . . END=10068042 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,900 +20 10068043 . G . . END=10068045 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,935 +20 10068046 . G . . END=10068046 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,907 +20 10068047 . T . . END=10068047 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10068048 . T . . END=10068048 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,919 +20 10068049 . A . . END=10068049 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,968 +20 10068050 . C . . END=10068050 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,917 +20 10068051 . T . . END=10068055 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,990 +20 10068056 . T . . END=10068056 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,908 +20 10068057 . C . . END=10068060 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,959 +20 10068061 . T . . END=10068063 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10068064 . C . . END=10068065 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10068066 . T . . END=10068066 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1066 +20 10068067 . A . . END=10068068 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10068069 . A . . END=10068071 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10068072 . T . . END=10068077 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10068078 . A . . END=10068078 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,965 +20 10068079 . A . . END=10068080 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,948 +20 10068081 . T . . END=10068084 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10068085 . C . . END=10068085 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,866 +20 10068086 . C . . END=10068090 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10068091 . T . . END=10068091 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,938 +20 10068092 . T . . END=10068092 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10068093 . C . . END=10068101 GT:DP:GQ:MIN_DP:PL 0/0:29:70:28:0,70,839 +20 10068102 . C . . END=10068102 GT:DP:GQ:MIN_DP:PL 0/0:29:55:29:0,55,789 +20 10068103 . A . . END=10068105 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,807 +20 10068106 . T . . END=10068106 GT:DP:GQ:MIN_DP:PL 0/0:27:53:27:0,53,807 +20 10068107 . A . . END=10068108 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,872 +20 10068109 . T . . END=10068118 GT:DP:GQ:MIN_DP:PL 0/0:30:72:27:0,72,1080 +20 10068119 . T . . END=10068120 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10068121 . T . . END=10068124 GT:DP:GQ:MIN_DP:PL 0/0:30:76:29:0,76,943 +20 10068125 . G . . END=10068125 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,786 +20 10068126 . A . . END=10068128 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +20 10068129 . T . . END=10068149 GT:DP:GQ:MIN_DP:PL 0/0:30:60:28:0,60,900 +20 10068150 . A . . END=10068154 GT:DP:GQ:MIN_DP:PL 0/0:31:57:30:0,57,855 +20 10068155 . A . . END=10068155 GT:DP:GQ:MIN_DP:PL 0/0:30:47:30:0,47,863 +20 10068156 . A . . END=10068157 GT:DP:GQ:MIN_DP:PL 0/0:34:51:33:0,51,765 +20 10068158 . G . . END=10068158 GT:DP:GQ:MIN_DP:PL 0/0:31:54:31:0,54,810 +20 10068159 . T . . END=10068160 GT:DP:GQ:MIN_DP:PL 0/0:33:45:32:0,45,675 +20 10068161 . T . . END=10068165 GT:DP:GQ:MIN_DP:PL 0/0:32:6:31:0,6,90 +20 10068166 . ATATATG A, 180.76 . BaseQRankSum=-0.980;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=88000,25;ReadPosRankSum=-0.660 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:2,9,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273:2,0,3,6 +20 10068168 . ATATG A, 0.13 . BaseQRankSum=0.447;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=88000,25;ReadPosRankSum=0.660 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068173 . T . . END=10068173 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,115 +20 10068174 . A . . END=10068175 GT:DP:GQ:MIN_DP:PL 0/0:29:39:29:0,39,585 +20 10068176 . A . . END=10068176 GT:DP:GQ:MIN_DP:PL 0/0:30:42:30:0,42,630 +20 10068177 . T . . END=10068184 GT:DP:GQ:MIN_DP:PL 0/0:30:48:29:0,48,720 +20 10068185 . T . . END=10068187 GT:DP:GQ:MIN_DP:PL 0/0:30:51:30:0,51,765 +20 10068188 . A . . END=10068192 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,810 +20 10068193 . T . . END=10068194 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,855 +20 10068195 . T . . END=10068198 GT:DP:GQ:MIN_DP:PL 0/0:31:63:30:0,63,945 +20 10068199 . T . . END=10068199 GT:DP:GQ:MIN_DP:PL 0/0:27:37:27:0,37,739 +20 10068200 . A . . END=10068200 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20 10068201 . T . . END=10068201 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,784 +20 10068202 . A . . END=10068203 GT:DP:GQ:MIN_DP:PL 0/0:28:73:27:0,73,837 +20 10068204 . A . . END=10068204 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10068205 . G . . END=10068205 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20 10068206 . C . . END=10068206 GT:DP:GQ:MIN_DP:PL 0/0:26:61:26:0,61,780 +20 10068207 . C . . END=10068208 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20 10068209 . C . . END=10068209 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,869 +20 10068210 . T . . END=10068210 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,852 +20 10068211 . C . . END=10068219 GT:DP:GQ:MIN_DP:PL 0/0:30:80:30:0,80,955 +20 10068220 . C . . END=10068220 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,884 +20 10068221 . A . . END=10068223 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10068224 . G . . END=10068224 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,911 +20 10068225 . G . . END=10068227 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,903 +20 10068228 . C . . END=10068228 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,892 +20 10068229 . T . . END=10068229 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,978 +20 10068230 . G . . END=10068230 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,869 +20 10068231 . C . . END=10068231 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,960 +20 10068232 . A . . END=10068232 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,962 +20 10068233 . A . . END=10068242 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,992 +20 10068243 . C . . END=10068243 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1052 +20 10068244 . C . . END=10068370 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,100,1082 +20 10068371 . G . . END=10068371 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1091 +20 10068372 . A . . END=10068372 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1127 +20 10068373 . A . . END=10068400 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1162 +20 10068401 . G . . END=10068401 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1146 +20 10068402 . A . . END=10068405 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,103,1213 +20 10068406 . A . . END=10068406 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1187 +20 10068407 . T . . END=10068412 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10068413 . A . . END=10068413 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1270 +20 10068414 . G . . END=10068414 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1144 +20 10068415 . T . . END=10068415 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1290 +20 10068416 . G . . END=10068416 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +20 10068417 . T . . END=10068417 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1289 +20 10068418 . A . . END=10068420 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1214 +20 10068421 . C . . END=10068421 GT:DP:GQ:MIN_DP:PL 0/0:38:65:38:0,65,1064 +20 10068422 . C . . END=10068422 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1223 +20 10068423 . A . . END=10068423 GT:DP:GQ:MIN_DP:PL 0/0:40:76:40:0,76,1217 +20 10068424 . G . . END=10068425 GT:DP:GQ:MIN_DP:PL 0/0:40:83:39:0,83,1176 +20 10068426 . C . . END=10068426 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10068427 . A . . END=10068427 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1176 +20 10068428 . C . . END=10068428 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10068429 . T . . END=10068429 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1093 +20 10068430 . A . . END=10068432 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1163 +20 10068433 . T . . END=10068436 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10068437 . A . . END=10068438 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1098 +20 10068439 . C . . END=10068442 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10068443 . T . . END=10068443 GT:DP:GQ:MIN_DP:PL 0/0:38:72:38:0,72,1086 +20 10068444 . A . . END=10068454 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,101,1048 +20 10068455 . C . . END=10068455 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1051 +20 10068456 . C . . END=10068456 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10068457 . C . . END=10068459 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10068460 . A . . END=10068466 GT:DP:GQ:MIN_DP:PL 0/0:36:81:34:0,81,1049 +20 10068467 . G . . END=10068467 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,881 +20 10068468 . A . . END=10068470 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10068471 . T . . END=10068473 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,955 +20 10068474 . G . . END=10068474 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1024 +20 10068475 . T . . END=10068477 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1013 +20 10068478 . T . . END=10068483 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1084 +20 10068484 . C . . END=10068484 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1101 +20 10068485 . A . . END=10068486 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10068487 . A . . END=10068487 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1139 +20 10068488 . T . . END=10068493 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1132 +20 10068494 . A . . END=10068494 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1128 +20 10068495 . A . . END=10068499 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1183 +20 10068500 . T . . END=10068500 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1162 +20 10068501 . C . . END=10068521 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1134 +20 10068522 . C . . END=10068522 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1134 +20 10068523 . A . . END=10068523 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1162 +20 10068524 . G . . END=10068533 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1100 +20 10068534 . C . . END=10068534 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1062 +20 10068535 . T . . END=10068545 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1139 +20 10068546 . G . . END=10068546 GT:DP:GQ:MIN_DP:PL 0/0:40:82:40:0,82,1117 +20 10068547 . A . . END=10068556 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1265 +20 10068557 . A . . END=10068557 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1188 +20 10068558 . G . . END=10068560 GT:DP:GQ:MIN_DP:PL 0/0:43:91:42:0,91,1262 +20 10068561 . G . . END=10068561 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1304 +20 10068562 . A . . END=10068563 GT:DP:GQ:MIN_DP:PL 0/0:43:92:42:0,92,1261 +20 10068564 . T . . END=10068564 GT:DP:GQ:MIN_DP:PL 0/0:42:73:42:0,73,1248 +20 10068565 . T . . END=10068566 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,120,1800 +20 10068567 . G . . END=10068568 GT:DP:GQ:MIN_DP:PL 0/0:42:84:41:0,84,1197 +20 10068569 . T . . END=10068569 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1265 +20 10068570 . C . . END=10068570 GT:DP:GQ:MIN_DP:PL 0/0:44:84:44:0,84,1255 +20 10068571 . T . . END=10068572 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1316 +20 10068573 . A . . END=10068573 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +20 10068574 . T . . END=10068575 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1311 +20 10068576 . G . . END=10068576 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1355 +20 10068577 . G . . END=10068577 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1288 +20 10068578 . T . . END=10068579 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,102,1323 +20 10068580 . G . . END=10068581 GT:DP:GQ:MIN_DP:PL 0/0:43:92:42:0,92,1207 +20 10068582 . G . . END=10068582 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +20 10068583 . C . . END=10068584 GT:DP:GQ:MIN_DP:PL 0/0:43:92:42:0,92,1193 +20 10068585 . G . . END=10068586 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1180 +20 10068587 . C . . END=10068588 GT:DP:GQ:MIN_DP:PL 0/0:42:90:41:0,90,1154 +20 10068589 . T . . END=10068591 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,120,1280 +20 10068592 . G . . END=10068592 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1194 +20 10068593 . G . . END=10068594 GT:DP:GQ:MIN_DP:PL 0/0:41:75:40:0,75,1169 +20 10068595 . A . . END=10068595 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,107,1244 +20 10068596 . G . . END=10068596 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1269 +20 10068597 . T . . END=10068601 GT:DP:GQ:MIN_DP:PL 0/0:45:99:44:0,99,1312 +20 10068602 . G . . END=10068602 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1234 +20 10068603 . T . . END=10068603 GT:DP:GQ:MIN_DP:PL 0/0:45:92:45:0,92,1221 +20 10068604 . C . . END=10068606 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1296 +20 10068607 . C . . END=10068608 GT:DP:GQ:MIN_DP:PL 0/0:44:94:43:0,94,1240 +20 10068609 . T . . END=10068617 GT:DP:GQ:MIN_DP:PL 0/0:46:99:45:0,102,1261 +20 10068618 . A . . END=10068618 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1337 +20 10068619 . A . . END=10068624 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,99,1259 +20 10068625 . C . . END=10068626 GT:DP:GQ:MIN_DP:PL 0/0:44:96:43:0,96,1209 +20 10068627 . T . . END=10068628 GT:DP:GQ:MIN_DP:PL 0/0:45:99:44:0,99,1285 +20 10068629 . G . . END=10068629 GT:DP:GQ:MIN_DP:PL 0/0:43:76:43:0,76,1163 +20 10068630 . A . . END=10068630 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1203 +20 10068631 . A . . END=10068632 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1189 +20 10068633 . T . . END=10068633 GT:DP:GQ:MIN_DP:PL 0/0:40:77:40:0,77,1127 +20 10068634 . T . . END=10068636 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1146 +20 10068637 . C . . END=10068638 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10068639 . A . . END=10068639 GT:DP:GQ:MIN_DP:PL 0/0:40:68:40:0,68,1135 +20 10068640 . G . . END=10068641 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1107 +20 10068642 . C . . END=10068642 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1085 +20 10068643 . A . . END=10068643 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1139 +20 10068644 . A . . END=10068644 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10068645 . A . . END=10068645 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1015 +20 10068646 . T . . END=10068646 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,965 +20 10068647 . G . . END=10068648 GT:DP:GQ:MIN_DP:PL 0/0:35:70:34:0,70,933 +20 10068649 . T . . END=10068649 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10068650 . A . . END=10068650 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10068651 . A . . END=10068651 GT:DP:GQ:MIN_DP:PL 0/0:36:56:36:0,56,975 +20 10068652 . T . . END=10068652 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1022 +20 10068653 . T . . END=10068653 GT:DP:GQ:MIN_DP:PL 0/0:37:60:37:0,60,1005 +20 10068654 . G . . END=10068654 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1112 +20 10068655 . G . . END=10068655 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10068656 . G . . END=10068656 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1136 +20 10068657 . C . . END=10068657 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10068658 . T . . END=10068659 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1109 +20 10068660 . C . . END=10068660 GT:DP:GQ:MIN_DP:PL 0/0:40:76:40:0,76,1107 +20 10068661 . T . . END=10068661 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1154 +20 10068662 . A . . END=10068662 GT:DP:GQ:MIN_DP:PL 0/0:39:62:39:0,62,1075 +20 10068663 . A . . END=10068664 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1110 +20 10068665 . G . . END=10068665 GT:DP:GQ:MIN_DP:PL 0/0:40:70:40:0,70,1086 +20 10068666 . T . . END=10068667 GT:DP:GQ:MIN_DP:PL 0/0:39:81:38:0,81,1109 +20 10068668 . T . . END=10068668 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20 10068669 . G . . END=10068670 GT:DP:GQ:MIN_DP:PL 0/0:39:80:38:0,80,1097 +20 10068671 . A . . END=10068671 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1165 +20 10068672 . A . . END=10068672 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1205 +20 10068673 . G . . END=10068674 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10068675 . G . . END=10068676 GT:DP:GQ:MIN_DP:PL 0/0:38:84:36:0,84,1039 +20 10068677 . T . . END=10068686 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10068687 . G . . END=10068690 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10068691 . T . . END=10068694 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10068695 . G . . END=10068696 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10068697 . G . . END=10068697 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10068698 . A . . END=10068710 GT:DP:GQ:MIN_DP:PL 0/0:32:81:28:0,81,989 +20 10068711 . T . . END=10068711 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,807 +20 10068712 . C . . END=10068718 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10068719 . G . . END=10068719 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10068720 . A . . END=10068727 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,943 +20 10068728 . A . . END=10068732 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10068733 . A . . END=10068733 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,932 +20 10068734 . T . . END=10068734 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10068735 . T . . END=10068735 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,973 +20 10068736 . G . . END=10068737 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10068738 . C . . END=10068741 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10068742 . C . . END=10068747 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10068748 . T . . END=10068748 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,996 +20 10068749 . C . . END=10068749 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10068750 . A . . END=10068759 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10068760 . A . . END=10068760 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,923 +20 10068761 . A . . END=10068763 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10068764 . A . . END=10068764 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,931 +20 10068765 . A . . END=10068773 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10068774 . T . . END=10068774 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,908 +20 10068775 . C . . END=10068781 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,880 +20 10068782 . G . . END=10068789 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,908 +20 10068790 . A . . END=10068790 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10068791 . T . . END=10068808 GT:DP:GQ:MIN_DP:PL 0/0:29:72:25:0,72,773 +20 10068809 . A . . END=10068813 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,874 +20 10068814 . A . . END=10068814 GT:DP:GQ:MIN_DP:PL 0/0:28:73:28:0,73,861 +20 10068815 . A . . END=10068818 GT:DP:GQ:MIN_DP:PL 0/0:29:82:28:0,82,862 +20 10068819 . C . . END=10068819 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10068820 . A . . END=10068820 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10068821 . A . . END=10068822 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10068823 . G . . END=10068823 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10068824 . G . . END=10068824 GT:DP:GQ:MIN_DP:PL 0/0:35:67:35:0,67,963 +20 10068825 . A . . END=10068863 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1153 +20 10068864 . C . . END=10068864 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1086 +20 10068865 . C . . END=10068866 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10068867 . G . . END=10068867 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1147 +20 10068868 . A . . END=10068875 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,104,1156 +20 10068876 . T . . END=10068876 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1191 +20 10068877 . A . . END=10068879 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1121 +20 10068880 . T . . END=10068880 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1066 +20 10068881 . T . . END=10068881 GT:DP:GQ:MIN_DP:PL 0/0:39:63:39:0,63,1072 +20 10068882 . A . . END=10068886 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10068887 . C . . END=10068887 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1070 +20 10068888 . A . . END=10068889 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10068890 . T . . END=10068890 GT:DP:GQ:MIN_DP:PL 0/0:36:59:36:0,59,1000 +20 10068891 . T . . END=10068892 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,998 +20 10068893 . T . . END=10068893 GT:DP:GQ:MIN_DP:PL 0/0:34:59:34:0,59,961 +20 10068894 . T . . END=10068896 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10068897 . T . . END=10068897 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,900 +20 10068898 . C . . END=10068899 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10068900 . G . . END=10068901 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,993 +20 10068902 . C . . END=10068906 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1015 +20 10068907 . G . . END=10068907 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,987 +20 10068908 . G . . END=10068908 GT:DP:GQ:MIN_DP:PL 0/0:35:64:35:0,64,972 +20 10068909 . A . . END=10068912 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10068913 . G . . END=10068914 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,998 +20 10068915 . T . . END=10068915 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,983 +20 10068916 . T . . END=10068925 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1009 +20 10068926 . G . . END=10068926 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10068927 . G . . END=10068927 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,976 +20 10068928 . G . . END=10068932 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10068933 . T . . END=10068933 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,951 +20 10068934 . G . . END=10068934 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10068935 . C . . END=10068935 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1020 +20 10068936 . A . . END=10068936 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10068937 . T . . END=10068938 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10068939 . A . . END=10068940 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10068941 . C . . END=10068941 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,936 +20 10068942 . A . . END=10068945 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10068946 . G . . END=10068949 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10068950 . A . . END=10068958 GT:DP:GQ:MIN_DP:PL 0/0:31:75:29:0,75,1125 +20 10068959 . A . . END=10068973 GT:DP:GQ:MIN_DP:PL 0/0:26:60:24:0,60,900 +20 10068974 . T . . END=10068974 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 +20 10068975 . A . . END=10068980 GT:DP:GQ:MIN_DP:PL 0/0:26:60:25:0,60,766 +20 10068981 . G A, 816.77 . DP=26;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=93600,26 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:845,78,0,845,78,845:0,0,14,12 +20 10068982 . A . . END=10068983 GT:DP:GQ:MIN_DP:PL 0/0:26:69:25:0,69,1035 +20 10068984 . A . . END=10068991 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,772 +20 10068992 . G . . END=10068992 GT:DP:GQ:MIN_DP:PL 0/0:26:62:26:0,62,774 +20 10068993 . A . . END=10069002 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,793 +20 10069003 . A . . END=10069006 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,827 +20 10069007 . A . . END=10069007 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,830 +20 10069008 . A . . END=10069008 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20 10069009 . A . . END=10069009 GT:DP:GQ:MIN_DP:PL 0/0:27:53:27:0,53,829 +20 10069010 . C . . END=10069024 GT:DP:GQ:MIN_DP:PL 0/0:28:72:25:0,72,802 +20 10069025 . C . . END=10069028 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,812 +20 10069029 . C . . END=10069029 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,813 +20 10069030 . C . . END=10069031 GT:DP:GQ:MIN_DP:PL 0/0:26:62:25:0,62,700 +20 10069032 . A . . END=10069038 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,786 +20 10069039 . C . . END=10069039 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,759 +20 10069040 . C . . END=10069040 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10069041 . C . . END=10069044 GT:DP:GQ:MIN_DP:PL 0/0:26:62:26:0,62,739 +20 10069045 . G . . END=10069062 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,812 +20 10069063 . C . . END=10069069 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,847 +20 10069070 . G . . END=10069070 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,825 +20 10069071 . A . . END=10069078 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10069079 . C . . END=10069079 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,865 +20 10069080 . T . . END=10069082 GT:DP:GQ:MIN_DP:PL 0/0:32:84:29:0,84,1260 +20 10069083 . G . . END=10069083 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,909 +20 10069084 . C . . END=10069089 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,856 +20 10069090 . C . . END=10069090 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10069091 . A . . END=10069092 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10069093 . A . . END=10069099 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10069100 . A . . END=10069115 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,989 +20 10069116 . A . . END=10069119 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1440 +20 10069120 . T . . END=10069120 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1003 +20 10069121 . A . . END=10069122 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10069123 . G . . END=10069124 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10069125 . G . . END=10069128 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10069129 . A . . END=10069131 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1007 +20 10069132 . G . . END=10069135 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,986 +20 10069136 . G . . END=10069144 GT:DP:GQ:MIN_DP:PL 0/0:32:84:29:0,84,1260 +20 10069145 . A . . END=10069167 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,955 +20 10069168 . T . . END=10069168 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,1015 +20 10069169 . G . . END=10069174 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10069175 . T . . END=10069175 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,1016 +20 10069176 . G . . END=10069180 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10069181 . T . . END=10069183 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10069184 . T . . END=10069188 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10069189 . G . . END=10069189 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10069190 . T . . END=10069211 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1117 +20 10069212 . A . . END=10069217 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10069218 . G . . END=10069219 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10069220 . T . . END=10069220 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1026 +20 10069221 . G . . END=10069230 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1065 +20 10069231 . T . . END=10069231 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1039 +20 10069232 . G . . END=10069233 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10069234 . G . . END=10069234 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1005 +20 10069235 . C . . END=10069239 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10069240 . C . . END=10069245 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +20 10069246 . A . . END=10069250 GT:DP:GQ:MIN_DP:PL 0/0:32:78:30:0,78,1170 +20 10069251 . T . . END=10069254 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10069255 . C . . END=10069255 GT:DP:GQ:MIN_DP:PL 0/0:27:49:27:0,49,768 +20 10069256 . A . . END=10069256 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10069257 . A . . END=10069257 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,832 +20 10069258 . T . . END=10069259 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,847 +20 10069260 . C . . END=10069260 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20 10069261 . C . . END=10069261 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,859 +20 10069262 . T . . END=10069284 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,804 +20 10069285 . T . . END=10069287 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,807 +20 10069288 . A . . END=10069297 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20 10069298 . G . . END=10069298 GT:DP:GQ:MIN_DP:PL 0/0:25:41:25:0,41,719 +20 10069299 . G . . END=10069303 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10069304 . A . . END=10069304 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,734 +20 10069305 . T . . END=10069327 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,726 +20 10069328 . T . . END=10069330 GT:DP:GQ:MIN_DP:PL 0/0:25:69:23:0,69,722 +20 10069331 . A . . END=10069331 GT:DP:GQ:MIN_DP:PL 0/0:24:46:24:0,46,694 +20 10069332 . T . . END=10069343 GT:DP:GQ:MIN_DP:PL 0/0:26:60:24:0,60,900 +20 10069344 . T . . END=10069344 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,855 +20 10069345 . G . . END=10069349 GT:DP:GQ:MIN_DP:PL 0/0:26:60:24:0,60,900 +20 10069350 . G . . END=10069351 GT:DP:GQ:MIN_DP:PL 0/0:26:48:25:0,48,707 +20 10069352 . G . . END=10069353 GT:DP:GQ:MIN_DP:PL 0/0:24:63:22:0,63,945 +20 10069354 . G . . END=10069354 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,621 +20 10069355 . T . . END=10069357 GT:DP:GQ:MIN_DP:PL 0/0:24:63:23:0,63,945 +20 10069358 . C . . END=10069358 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,669 +20 10069359 . T . . END=10069364 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,757 +20 10069365 . T . . END=10069372 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,790 +20 10069373 . C . . END=10069373 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,869 +20 10069374 . A . . END=10069375 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10069376 . T . . END=10069376 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,876 +20 10069377 . A . . END=10069385 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20 10069386 . C . . END=10069386 GT:DP:GQ:MIN_DP:PL 0/0:30:71:30:0,71,848 +20 10069387 . T . . END=10069403 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,902 +20 10069404 . A . . END=10069404 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,810 +20 10069405 . T . . END=10069411 GT:DP:GQ:MIN_DP:PL 0/0:28:70:26:0,70,807 +20 10069412 . A . . END=10069418 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,827 +20 10069419 . T . . END=10069419 GT:DP:GQ:MIN_DP:PL 0/0:29:59:29:0,59,837 +20 10069420 . C . . END=10069421 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,910 +20 10069422 . C . . END=10069422 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,880 +20 10069423 . A . . END=10069423 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,909 +20 10069424 . T . . END=10069427 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,946 +20 10069428 . T . . END=10069428 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10069429 . C . . END=10069430 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10069431 . C . . END=10069431 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10069432 . T . . END=10069443 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10069444 . G . . END=10069444 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,903 +20 10069445 . G . . END=10069453 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,940 +20 10069454 . A . . END=10069454 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1001 +20 10069455 . T . . END=10069457 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10069458 . T . . END=10069465 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1004 +20 10069466 . G . . END=10069466 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,967 +20 10069467 . T . . END=10069485 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,102,1090 +20 10069486 . G . . END=10069486 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1150 +20 10069487 . G . . END=10069493 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20 10069494 . T . . END=10069494 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1216 +20 10069495 . G . . END=10069495 GT:DP:GQ:MIN_DP:PL 0/0:41:77:41:0,77,1152 +20 10069496 . G . . END=10069509 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10069510 . C . . END=10069510 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1009 +20 10069511 . T . . END=10069517 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1112 +20 10069518 . C . . END=10069518 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1101 +20 10069519 . C . . END=10069524 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,1114 +20 10069525 . A . . END=10069525 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1141 +20 10069526 . T . . END=10069537 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,104,1165 +20 10069538 . G . . END=10069539 GT:DP:GQ:MIN_DP:PL 0/0:44:92:43:0,92,1207 +20 10069540 . A . . END=10070051 GT:DP:GQ:MIN_DP:PL 0/0:47:99:37:0,99,1163 +20 10070052 . G . . END=10070057 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,93,1395 +20 10070058 . G . . END=10070058 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10070059 . T . . END=10070059 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1128 +20 10070060 . T . . END=10070060 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10070061 . T . . END=10070063 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10070064 . A . . END=10070064 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10070065 . A . . END=10070068 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20 10070069 . G . . END=10070069 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1078 +20 10070070 . C . . END=10070070 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10070071 . T . . END=10070073 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10070074 . G . . END=10070074 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,953 +20 10070075 . T . . END=10070077 GT:DP:GQ:MIN_DP:PL 0/0:36:93:32:0,93,1395 +20 10070078 . G . . END=10070079 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10070080 . C . . END=10070080 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1068 +20 10070081 . A . . END=10070081 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10070082 . T . . END=10070082 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1081 +20 10070083 . T . . END=10070098 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,956 +20 10070099 . G . . END=10070099 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1081 +20 10070100 . T . . END=10070105 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10070106 . C . . END=10070106 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1037 +20 10070107 . C . . END=10070155 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1165 +20 10070156 . G . . END=10070156 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1056 +20 10070157 . G . . END=10070162 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1000 +20 10070163 . C . . END=10070163 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10070164 . C . . END=10070171 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1002 +20 10070172 . T . . END=10070172 GT:DP:GQ:MIN_DP:PL 0/0:34:76:34:0,76,965 +20 10070173 . C . . END=10070192 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,102,1232 +20 10070193 . G . . END=10070193 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1117 +20 10070194 . G . . END=10070233 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,101,1123 +20 10070234 . A . . END=10070234 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1151 +20 10070235 . G . . END=10070259 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1090 +20 10070260 . A . . END=10070260 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1207 +20 10070261 . A . . END=10070263 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10070264 . A . . END=10070265 GT:DP:GQ:MIN_DP:PL 0/0:36:92:35:0,92,1023 +20 10070266 . A . . END=10070266 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1039 +20 10070267 . T . . END=10070272 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10070273 . T . . END=10070273 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10070274 . A . . END=10070279 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1033 +20 10070280 . G . . END=10070287 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10070288 . T . . END=10070288 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1055 +20 10070289 . C . . END=10070314 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,103,1113 +20 10070315 . T . . END=10070315 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1170 +20 10070316 . T . . END=10070328 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1530 +20 10070329 . T . . END=10070329 GT:DP:GQ:MIN_DP:PL 0/0:38:67:38:0,67,1133 +20 10070330 . T . . END=10070335 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10070336 . A . . END=10070336 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1127 +20 10070337 . C . . END=10070356 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1083 +20 10070357 . A . . END=10070357 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1175 +20 10070358 . A . . END=10070366 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10070367 . A . . END=10070367 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1172 +20 10070368 . A . . END=10070371 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1131 +20 10070372 . C . . END=10070372 GT:DP:GQ:MIN_DP:PL 0/0:37:66:37:0,66,992 +20 10070373 . C . . END=10070412 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1153 +20 10070413 . A . . END=10070413 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1190 +20 10070414 . C . . END=10070421 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 +20 10070422 . G . . END=10070422 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10070423 . C . . END=10070425 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10070426 . G . . END=10070435 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1071 +20 10070436 . A . . END=10070441 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10070442 . C . . END=10070443 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1101 +20 10070444 . C . . END=10070493 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,101,1088 +20 10070494 . C . . END=10070494 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1182 +20 10070495 . C . . END=10070520 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,100,1111 +20 10070521 . G . . END=10070521 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1074 +20 10070522 . G . . END=10070533 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1129 +20 10070534 . T . . END=10070543 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10070544 . T . . END=10070545 GT:DP:GQ:MIN_DP:PL 0/0:34:86:33:0,86,1014 +20 10070546 . T . . END=10070553 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10070554 . T . . END=10070554 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,989 +20 10070555 . G . . END=10070564 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10070565 . G . . END=10070601 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,105,1144 +20 10070602 . T C, 446.77 . BaseQRankSum=-3.081;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=-0.689 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:475,0,592,538,649,1187:13,8,8,11 +20 10070603 . A . . END=10070632 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,104,1138 +20 10070633 . A . . END=10070633 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1277 +20 10070634 . G . . END=10070651 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,120,1800 +20 10070652 . C . . END=10070652 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1334 +20 10070653 . T . . END=10070893 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,99,1230 +20 10070894 . C . . END=10070896 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1395 +20 10070897 . G . . END=10070911 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1215 +20 10070912 . A . . END=10070914 GT:DP:GQ:MIN_DP:PL 0/0:39:78:38:0,78,1170 +20 10070915 . A . . END=10070917 GT:DP:GQ:MIN_DP:PL 0/0:40:81:39:0,81,1215 +20 10070918 . C . . END=10070918 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1125 +20 10070919 . T . . END=10070928 GT:DP:GQ:MIN_DP:PL 0/0:40:60:38:0,60,900 +20 10070929 . A . . END=10070932 GT:DP:GQ:MIN_DP:PL 0/0:42:57:41:0,57,855 +20 10070933 . C . . END=10070935 GT:DP:GQ:MIN_DP:PL 0/0:43:62:43:0,62,945 +20 10070936 . T A, 696.77 . BaseQRankSum=-1.071;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=147600,41;ReadPosRankSum=0.014 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:21,19,0:40:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,12,7,12 +20 10070937 . A . . END=10070937 GT:DP:GQ:MIN_DP:PL 0/0:43:63:43:0,63,945 +20 10070938 . G GA, 687.73 . BaseQRankSum=-0.802;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=-0.540 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,19,0:38:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,10,7,12 +20 10070939 . A . . END=10070939 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,113 +20 10070940 . G . . END=10070940 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,120,1240 +20 10070941 . T . . END=10070941 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1235 +20 10070942 . T . . END=10070958 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,108,1250 +20 10070959 . A . . END=10070959 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1303 +20 10070960 . G . . END=10070969 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1530 +20 10070970 . C . . END=10070970 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1109 +20 10070971 . T . . END=10070971 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10070972 . A . . END=10070977 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20 10070978 . C . . END=10070982 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10070983 . G . . END=10070983 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1055 +20 10070984 . G . . END=10070984 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,962 +20 10070985 . G . . END=10070989 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10070990 . G . . END=10070992 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10070993 . T . . END=10070993 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10070994 . T . . END=10070994 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10070995 . G . . END=10070995 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1078 +20 10070996 . A . . END=10070996 GT:DP:GQ:MIN_DP:PL 0/0:35:60:35:0,60,991 +20 10070997 . A . . END=10070998 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10070999 . C . . END=10070999 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1014 +20 10071000 . T . . END=10071003 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1028 +20 10071004 . T . . END=10071009 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10071010 . T . . END=10071010 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1048 +20 10071011 . A . . END=10071011 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10071012 . G . . END=10071012 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1031 +20 10071013 . C . . END=10071013 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10071014 . A . . END=10071014 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10071015 . C . . END=10071015 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10071016 . A . . END=10071019 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10071020 . G . . END=10071134 GT:DP:GQ:MIN_DP:PL 0/0:47:99:35:0,102,1106 +20 10071135 . C T, 1452.77 . BaseQRankSum=1.772;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=180000,50;ReadPosRankSum=2.251 GT:AD:DP:GQ:PL:SB 1/1:1,48,0:49:99:1481,137,0,1483,144,1490:0,1,21,27 +20 10071136 . T . . END=10071186 GT:DP:GQ:MIN_DP:PL 0/0:51:99:45:0,115,1316 +20 10071187 . G A, 590.77 . BaseQRankSum=2.967;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=165600,46;ReadPosRankSum=-0.208 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:619,0,444,681,516,1197:13,8,10,14 +20 10071188 . G . . END=10071301 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,105,1229 +20 10071302 . T . . END=10071302 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1193 +20 10071303 . T . . END=10071337 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,105,1151 +20 10071338 . G . . END=10071340 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10071341 . C . . END=10071380 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1189 +20 10071381 . A . . END=10071381 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1187 +20 10071382 . T . . END=10071705 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,104,1209 +20 10071706 . C . . END=10071706 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1325 +20 10071707 . A . . END=10071780 GT:DP:GQ:MIN_DP:PL 0/0:49:99:45:0,120,1800 +20 10071781 . C . . END=10071781 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1292 +20 10071782 . C . . END=10071863 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,99,1153 +20 10071864 . G . . END=10071864 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1010 +20 10071865 . C . . END=10071883 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1158 +20 10071884 . T . . END=10071884 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1187 +20 10071885 . C . . END=10071889 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,102,1207 +20 10071890 . T C, 459.77 . BaseQRankSum=-4.435;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=0.584 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:488,0,521,548,590,1138:10,10,9,14 +20 10071891 . G . . END=10072038 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,101,1226 +20 10072039 . C . . END=10072039 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1189 +20 10072040 . A . . END=10072092 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,101,1113 +20 10072093 . T . . END=10072093 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1264 +20 10072094 . G . . END=10072488 GT:DP:GQ:MIN_DP:PL 0/0:52:99:38:0,99,1218 +20 10072489 . A . . END=10072489 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1120 +20 10072490 . C . . END=10072499 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,101,1149 +20 10072500 . A . . END=10072500 GT:DP:GQ:MIN_DP:PL 0/0:41:86:41:0,86,1135 +20 10072501 . A . . END=10072504 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,120,1800 +20 10072505 . A G, 454.77 . BaseQRankSum=-1.080;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=0.816 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:483,0,448,539,508,1047:8,11,10,10 +20 10072506 . C . . END=10072589 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,104,1218 +20 10072590 . G . . END=10072590 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1228 +20 10072591 . T . . END=10072628 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1255 +20 10072629 . A . . END=10072629 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10072630 . C . . END=10072631 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10072632 . T . . END=10072634 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10072635 . G . . END=10072642 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10072643 . A . . END=10072643 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1004 +20 10072644 . C . . END=10072654 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10072655 . T . . END=10072655 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1078 +20 10072656 . C . . END=10072664 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1575 +20 10072665 . A . . END=10072665 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1226 +20 10072666 . A . . END=10072682 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1249 +20 10072683 . A . . END=10072683 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1225 +20 10072684 . G . . END=10072684 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10072685 . A . . END=10072685 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1115 +20 10072686 . G . . END=10072688 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10072689 . T . . END=10072689 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1146 +20 10072690 . T . . END=10072710 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1031 +20 10072711 . A . . END=10072711 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1023 +20 10072712 . A . . END=10072729 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1089 +20 10072730 . G . . END=10072731 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1066 +20 10072732 . T . . END=10072734 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10072735 . G . . END=10072738 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10072739 . C . . END=10072745 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1485 +20 10072746 . G . . END=10072746 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1083 +20 10072747 . A . . END=10072750 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,111,1107 +20 10072751 . G . . END=10072751 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1100 +20 10072752 . T . . END=10072774 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1070 +20 10072775 . A . . END=10072775 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1074 +20 10072776 . C . . END=10072804 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,100,1067 +20 10072805 . A . . END=10072809 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10072810 . C . . END=10072810 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10072811 . C . . END=10072811 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10072812 . A . . END=10072830 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1101 +20 10072831 . A . . END=10072831 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1146 +20 10072832 . G . . END=10072838 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10072839 . T . . END=10072839 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1143 +20 10072840 . C . . END=10072871 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,102,1158 +20 10072872 . C . . END=10072872 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1118 +20 10072873 . T . . END=10072883 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1222 +20 10072884 . A . . END=10072890 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20 10072891 . G . . END=10072891 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1038 +20 10072892 . G . . END=10072892 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10072893 . C . . END=10072897 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1054 +20 10072898 . G . . END=10072898 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1046 +20 10072899 . A . . END=10072909 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1126 +20 10072910 . G . . END=10072910 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,1006 +20 10072911 . G . . END=10072913 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10072914 . G . . END=10072915 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,997 +20 10072916 . G . . END=10072916 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10072917 . C . . END=10072917 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10072918 . T . . END=10072929 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1119 +20 10072930 . T . . END=10072930 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1062 +20 10072931 . C . . END=10072932 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10072933 . T . . END=10072933 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,999 +20 10072934 . C . . END=10072935 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,904 +20 10072936 . G . . END=10072937 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1002 +20 10072938 . C . . END=10072946 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1095 +20 10072947 . G . . END=10072951 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10072952 . T . . END=10072964 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10072965 . A . . END=10072965 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1131 +20 10072966 . G . . END=10072966 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10072967 . C . . END=10072967 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1119 +20 10072968 . C . . END=10072990 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1142 +20 10072991 . A . . END=10072996 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10072997 . G . . END=10073091 GT:DP:GQ:MIN_DP:PL 0/0:41:99:34:0,99,1059 +20 10073092 . G . . END=10073092 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1073 +20 10073093 . T . . END=10073096 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1190 +20 10073097 . C . . END=10073097 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1147 +20 10073098 . C . . END=10073129 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,114,1244 +20 10073130 . A . . END=10073130 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1349 +20 10073131 . G . . END=10073157 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,102,1292 +20 10073158 . C . . END=10073158 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1302 +20 10073159 . A . . END=10073175 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,111,1665 +20 10073176 . T . . END=10073176 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1349 +20 10073177 . T . . END=10073177 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,102,1375 +20 10073178 . A . . END=10073180 GT:DP:GQ:MIN_DP:PL 0/0:43:92:42:0,92,1280 +20 10073181 . T . . END=10073181 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,101,1309 +20 10073182 . A . . END=10073182 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1239 +20 10073183 . T . . END=10073263 GT:DP:GQ:MIN_DP:PL 0/0:46:99:39:0,100,1247 +20 10073264 . A . . END=10073264 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1135 +20 10073265 . G . . END=10073265 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20 10073266 . T . . END=10073266 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1070 +20 10073267 . G . . END=10073276 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,104,1165 +20 10073277 . A . . END=10073277 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1177 +20 10073278 . A . . END=10073279 GT:DP:GQ:MIN_DP:PL 0/0:40:94:39:0,94,1122 +20 10073280 . T . . END=10073337 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1166 +20 10073338 . T . . END=10073338 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1156 +20 10073339 . T . . END=10073344 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1116 +20 10073345 . A . . END=10073348 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1007 +20 10073349 . G . . END=10073350 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1073 +20 10073351 . G . . END=10073351 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,1017 +20 10073352 . G . . END=10073352 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1082 +20 10073353 . C . . END=10073353 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1083 +20 10073354 . A . . END=10073360 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1055 +20 10073361 . T . . END=10073364 GT:DP:GQ:MIN_DP:PL 0/0:34:96:32:0,96,1019 +20 10073365 . T . . END=10073365 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1023 +20 10073366 . C . . END=10073366 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,943 +20 10073367 . G . . END=10073367 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,931 +20 10073368 . A . . END=10073369 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1070 +20 10073370 . G . . END=10073371 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10073372 . C . . END=10073377 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1089 +20 10073378 . T . . END=10073378 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1044 +20 10073379 . T . . END=10073390 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1140 +20 10073391 . T . . END=10073391 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1126 +20 10073392 . G . . END=10073420 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1149 +20 10073421 . A . . END=10073425 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1350 +20 10073426 . T . . END=10073434 GT:DP:GQ:MIN_DP:PL 0/0:36:84:34:0,84,1260 +20 10073435 . A . . END=10073435 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,937 +20 10073436 . T . . END=10073436 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20 10073437 . T . . END=10073443 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10073444 . G . . END=10073448 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10073449 . G . . END=10073450 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10073451 . G . . END=10073451 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1017 +20 10073452 . G . . END=10073462 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1080 +20 10073463 . T . . END=10073463 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1071 +20 10073464 . T . . END=10073472 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1097 +20 10073473 . T . . END=10073473 GT:DP:GQ:MIN_DP:PL 0/0:39:71:39:0,71,1136 +20 10073474 . A . . END=10073489 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,102,1087 +20 10073490 . C . . END=10073490 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1177 +20 10073491 . C . . END=10073494 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10073495 . A . . END=10073498 GT:DP:GQ:MIN_DP:PL 0/0:38:92:36:0,92,1129 +20 10073499 . G . . END=10073500 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10073501 . G . . END=10073501 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1098 +20 10073502 . A . . END=10073510 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1017 +20 10073511 . G . . END=10073512 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10073513 . T . . END=10073551 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1013 +20 10073552 . G . . END=10073552 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,978 +20 10073553 . C . . END=10073553 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,936 +20 10073554 . G . . END=10073560 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,963 +20 10073561 . C . . END=10073564 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1029 +20 10073565 . T . . END=10073565 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1000 +20 10073566 . T . . END=10073567 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10073568 . A . . END=10073569 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10073570 . G . . END=10073570 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,969 +20 10073571 . G . . END=10073571 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1003 +20 10073572 . A . . END=10073572 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,947 +20 10073573 . C . . END=10073573 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10073574 . C . . END=10073574 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1007 +20 10073575 . C . . END=10073584 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1069 +20 10073585 . A . . END=10073600 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,986 +20 10073601 . T . . END=10073601 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1027 +20 10073602 . A . . END=10073610 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,965 +20 10073611 . T . . END=10073611 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,992 +20 10073612 . C . . END=10073614 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1034 +20 10073615 . C . . END=10073699 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,105,1029 +20 10073700 . G . . END=10073700 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1053 +20 10073701 . A . . END=10073722 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,106,1219 +20 10073723 . T . . END=10073723 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1160 +20 10073724 . G . . END=10073758 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1160 +20 10073759 . T . . END=10073768 GT:DP:GQ:MIN_DP:PL 0/0:39:93:34:0,93,1395 +20 10073769 . A . . END=10073769 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1023 +20 10073770 . C . . END=10073771 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10073772 . A . . END=10073775 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10073776 . G . . END=10073776 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10073777 . C . . END=10073777 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,970 +20 10073778 . C . . END=10073778 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10073779 . A . . END=10073779 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10073780 . A . . END=10073787 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10073788 . A . . END=10073788 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1030 +20 10073789 . G . . END=10073789 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10073790 . T . . END=10073807 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1150 +20 10073808 . A . . END=10073808 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1124 +20 10073809 . C . . END=10073818 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,114,1295 +20 10073819 . T . . END=10073819 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1213 +20 10073820 . T . . END=10073822 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10073823 . A . . END=10073823 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1216 +20 10073824 . T . . END=10073829 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1154 +20 10073830 . T . . END=10073830 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1215 +20 10073831 . T . . END=10073836 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,112,1269 +20 10073837 . G . . END=10073837 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1115 +20 10073838 . C . . END=10073838 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10073839 . A . . END=10073839 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1218 +20 10073840 . T . . END=10073847 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,108,1620 +20 10073848 . G . . END=10073849 GT:DP:GQ:MIN_DP:PL 0/0:41:93:40:0,93,1150 +20 10073850 . T . . END=10073854 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1123 +20 10073855 . A . . END=10073855 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1159 +20 10073856 . G . . END=10073868 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1132 +20 10073869 . C . . END=10073869 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1137 +20 10073870 . C . . END=10073890 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,103,1209 +20 10073891 . A . . END=10073891 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1204 +20 10073892 . T . . END=10073897 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10073898 . G . . END=10073898 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1037 +20 10073899 . T . . END=10073900 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1132 +20 10073901 . A . . END=10073901 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1036 +20 10073902 . G . . END=10073906 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10073907 . C . . END=10073908 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10073909 . A . . END=10073909 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1085 +20 10073910 . T . . END=10073928 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1121 +20 10073929 . T . . END=10073929 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1094 +20 10073930 . G . . END=10073930 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10073931 . C . . END=10073932 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10073933 . A . . END=10073933 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10073934 . G . . END=10073934 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10073935 . A . . END=10073935 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1075 +20 10073936 . A . . END=10073943 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1042 +20 10073944 . C . . END=10073945 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10073946 . G . . END=10073954 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1037 +20 10073955 . G . . END=10073955 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10073956 . T . . END=10073956 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1142 +20 10073957 . C . . END=10073967 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1029 +20 10073968 . T . . END=10073968 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1051 +20 10073969 . C . . END=10073976 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10073977 . C . . END=10073977 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,945 +20 10073978 . G . . END=10073982 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10073983 . G . . END=10073983 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1043 +20 10073984 . G . . END=10074121 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,100,1126 +20 10074122 . G . . END=10074122 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1154 +20 10074123 . G . . END=10074125 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10074126 . T . . END=10074126 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1091 +20 10074127 . A . . END=10074129 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1229 +20 10074130 . C . . END=10074130 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1163 +20 10074131 . C . . END=10074186 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,108,1121 +20 10074187 . A G, 665.77 . BaseQRankSum=-0.636;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=2.417 GT:AD:DP:GQ:PL:SB 0/1:17,26,0:43:99:694,0,403,745,481,1226:10,7,16,10 +20 10074188 . T . . END=10074239 GT:DP:GQ:MIN_DP:PL 0/0:49:99:44:0,113,1271 +20 10074240 . T C, 564.77 . BaseQRankSum=-3.298;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=180000,50;ReadPosRankSum=-1.192 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:593,0,646,665,721,1386:13,11,14,11 +20 10074241 . A . . END=10074667 GT:DP:GQ:MIN_DP:PL 0/0:51:99:39:0,102,1161 +20 10074668 . C . . END=10074668 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1071 +20 10074669 . A . . END=10074671 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20 10074672 . G . . END=10074674 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10074675 . A . . END=10074676 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10074677 . G . . END=10074677 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1085 +20 10074678 . C . . END=10074695 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10074696 . G . . END=10074696 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10074697 . C . . END=10074697 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1035 +20 10074698 . A . . END=10074698 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10074699 . A . . END=10074699 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1061 +20 10074700 . A . . END=10074703 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1040 +20 10074704 . A . . END=10074704 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1038 +20 10074705 . A . . END=10074715 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,952 +20 10074716 . G A, 979.77 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1008,99,0,1008,99,1008:0,0,11,22 +20 10074717 . C . . END=10074718 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10074719 . C . . END=10074720 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10074721 . G . . END=10074721 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10074722 . G . . END=10074723 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10074724 . C . . END=10074724 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10074725 . A . . END=10074728 GT:DP:GQ:MIN_DP:PL 0/0:40:96:38:0,96,1440 +20 10074729 . G . . END=10074740 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10074741 . C . . END=10074755 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10074756 . G . . END=10074763 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1048 +20 10074764 . T . . END=10074764 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1048 +20 10074765 . G . . END=10074765 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1060 +20 10074766 . C . . END=10074766 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10074767 . A . . END=10074767 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10074768 . G . . END=10074768 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10074769 . G . . END=10074769 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1073 +20 10074770 . A . . END=10074771 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10074772 . A . . END=10074772 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10074773 . C . . END=10074774 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10074775 . G . . END=10074776 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10074777 . C . . END=10074777 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1051 +20 10074778 . C . . END=10074792 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1015 +20 10074793 . C . . END=10074793 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1012 +20 10074794 . C . . END=10074796 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10074797 . A . . END=10074797 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1017 +20 10074798 . A . . END=10074805 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1103 +20 10074806 . G A, 584.77 . BaseQRankSum=2.322;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=-0.100 GT:AD:DP:GQ:PL:SB 0/1:14,23,0:37:99:613,0,307,655,375,1031:8,6,8,15 +20 10074807 . C . . END=10075042 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,100,1070 +20 10075043 . T C, 1148.77 . DP=40;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=144000,40 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1177,116,0,1177,116,1177:0,0,25,14 +20 10075044 . C . . END=10075145 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1187 +20 10075146 . C . . END=10075146 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1143 +20 10075147 . C . . END=10075167 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1530 +20 10075168 . C T, 1002.77 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=118800,33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1031,99,0,1031,99,1031:0,0,18,15 +20 10075169 . G . . END=10075173 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1124 +20 10075174 . A . . END=10075182 GT:DP:GQ:MIN_DP:PL 0/0:36:92:35:0,92,1048 +20 10075183 . C . . END=10075188 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1119 +20 10075189 . A . . END=10075189 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1107 +20 10075190 . A . . END=10075202 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1083 +20 10075203 . A . . END=10075203 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1134 +20 10075204 . C . . END=10075205 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10075206 . A . . END=10075206 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1236 +20 10075207 . A . . END=10075209 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10075210 . A . . END=10075210 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1211 +20 10075211 . C . . END=10075462 GT:DP:GQ:MIN_DP:PL 0/0:48:99:37:0,101,1025 +20 10075463 . G A, 507.77 . BaseQRankSum=0.247;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=151200,42;ReadPosRankSum=-2.174 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:536,0,436,593,503,1096:10,9,8,15 +20 10075464 . G . . END=10075471 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,99,1485 +20 10075472 . C . . END=10075476 GT:DP:GQ:MIN_DP:PL 0/0:45:93:43:0,93,1395 +20 10075477 . A . . END=10075478 GT:DP:GQ:MIN_DP:PL 0/0:44:84:42:0,84,1260 +20 10075479 . A G, 1436.77 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1465,120,0,1465,120,1465:0,0,17,22 +20 10075480 . T . . END=10075484 GT:DP:GQ:MIN_DP:PL 0/0:45:81:44:0,81,1215 +20 10075485 . T . . END=10075489 GT:DP:GQ:MIN_DP:PL 0/0:43:72:39:0,72,1080 +20 10075490 . T . . END=10075490 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,990 +20 10075491 . G . . END=10075491 GT:DP:GQ:MIN_DP:PL 0/0:39:57:39:0,57,855 +20 10075492 . T . . END=10075496 GT:DP:GQ:MIN_DP:PL 0/0:40:54:38:0,54,810 +20 10075497 . G . . END=10075497 GT:DP:GQ:MIN_DP:PL 0/0:39:51:39:0,51,765 +20 10075498 . T . . END=10075499 GT:DP:GQ:MIN_DP:PL 0/0:39:48:39:0,48,720 +20 10075500 . A . . END=10075501 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,630 +20 10075502 . T . . END=10075502 GT:DP:GQ:MIN_DP:PL 0/0:34:48:34:0,48,720 +20 10075503 . A . . END=10075506 GT:DP:GQ:MIN_DP:PL 0/0:36:45:35:0,45,675 +20 10075507 . A . . END=10075507 GT:DP:GQ:MIN_DP:PL 0/0:36:39:36:0,39,585 +20 10075508 . GAA G, 319.73 . BaseQRankSum=-0.127;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=100800,28;ReadPosRankSum=2.470 GT:AD:DP:GQ:PL:SB 0/1:12,11,0:23:99:357,0,371,393,405,798:5,7,5,6 +20 10075511 . A . . END=10075511 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,66 +20 10075512 . A . . END=10075513 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20 10075514 . A . . END=10075516 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10075517 . A . . END=10075517 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1019 +20 10075518 . A . . END=10075518 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10075519 . A . . END=10075519 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,998 +20 10075520 . C . . END=10075522 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10075523 . A . . END=10075523 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1030 +20 10075524 . A . . END=10075526 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10075527 . T . . END=10075530 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1038 +20 10075531 . G . . END=10075531 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1017 +20 10075532 . A . . END=10075532 GT:DP:GQ:MIN_DP:PL 0/0:35:64:35:0,64,980 +20 10075533 . T . . END=10075533 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1062 +20 10075534 . T . . END=10075534 GT:DP:GQ:MIN_DP:PL 0/0:32:70:32:0,70,951 +20 10075535 . T . . END=10075536 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1079 +20 10075537 . T . . END=10075537 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10075538 . G . . END=10075538 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1007 +20 10075539 . T . . END=10075539 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10075540 . T . . END=10075540 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1089 +20 10075541 . A . . END=10075545 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1107 +20 10075546 . A . . END=10075546 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1110 +20 10075547 . G . . END=10075555 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,108,1132 +20 10075556 . T . . END=10075557 GT:DP:GQ:MIN_DP:PL 0/0:40:96:39:0,96,1440 +20 10075558 . T . . END=10075575 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,99,1097 +20 10075576 . A . . END=10075580 GT:DP:GQ:MIN_DP:PL 0/0:37:92:36:0,92,980 +20 10075581 . T . . END=10075582 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10075583 . A . . END=10075583 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1244 +20 10075584 . C . . END=10075587 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,111,1665 +20 10075588 . A . . END=10075588 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1177 +20 10075589 . T . . END=10075593 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1088 +20 10075594 . G . . END=10075594 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,995 +20 10075595 . A . . END=10075595 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10075596 . T . . END=10075596 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1103 +20 10075597 . G . . END=10075603 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1059 +20 10075604 . C . . END=10075604 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1068 +20 10075605 . A . . END=10075624 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,105,1025 +20 10075625 . T . . END=10075628 GT:DP:GQ:MIN_DP:PL 0/0:43:90:42:0,90,1350 +20 10075629 . A . . END=10075632 GT:DP:GQ:MIN_DP:PL 0/0:41:81:39:0,81,1215 +20 10075633 . C . . END=10075636 GT:DP:GQ:MIN_DP:PL 0/0:41:72:40:0,72,1080 +20 10075637 . A . . END=10075646 GT:DP:GQ:MIN_DP:PL 0/0:41:60:39:0,60,900 +20 10075647 . A . . END=10075647 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,855 +20 10075648 . T . . END=10075648 GT:DP:GQ:MIN_DP:PL 0/0:39:54:39:0,54,810 +20 10075649 . T . . END=10075649 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,765 +20 10075650 . A . . END=10075652 GT:DP:GQ:MIN_DP:PL 0/0:40:48:38:0,48,720 +20 10075653 . T . . END=10075654 GT:DP:GQ:MIN_DP:PL 0/0:39:42:38:0,42,630 +20 10075655 . G . . END=10075658 GT:DP:GQ:MIN_DP:PL 0/0:39:39:37:0,39,585 +20 10075659 . T . . END=10075659 GT:DP:GQ:MIN_DP:PL 0/0:38:36:38:0,36,540 +20 10075660 . A . . END=10075660 GT:DP:GQ:MIN_DP:PL 0/0:39:27:39:0,27,405 +20 10075661 . T . . END=10075662 GT:DP:GQ:MIN_DP:PL 0/0:39:24:38:0,24,360 +20 10075663 . G . . END=10075663 GT:DP:GQ:MIN_DP:PL 0/0:37:21:37:0,21,315 +20 10075664 . C . . END=10075664 GT:DP:GQ:MIN_DP:PL 0/0:38:18:38:0,18,270 +20 10075665 . T . . END=10075666 GT:DP:GQ:MIN_DP:PL 0/0:37:9:37:0,9,135 +20 10075667 . A . . END=10075668 GT:DP:GQ:MIN_DP:PL 0/0:37:3:37:0,3,45 +20 10075669 . GA G, 779.73 . DP=32;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=116500,32 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:817,87,0,817,87,817:0,0,15,14 +20 10075671 . A . . END=10075671 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,0 +20 10075672 . A . . END=10075675 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1041 +20 10075676 . A . . END=10075676 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1084 +20 10075677 . A . . END=10075678 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1088 +20 10075679 . A . . END=10075679 GT:DP:GQ:MIN_DP:PL 0/0:36:68:36:0,68,1003 +20 10075680 . A . . END=10075680 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1260 +20 10075681 . T . . END=10075681 GT:DP:GQ:MIN_DP:PL 0/0:35:58:35:0,58,941 +20 10075682 . G . . END=10075682 GT:DP:GQ:MIN_DP:PL 0/0:35:68:35:0,68,952 +20 10075683 . C . . END=10075689 GT:DP:GQ:MIN_DP:PL 0/0:35:80:32:0,80,940 +20 10075690 . A . . END=10075693 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10075694 . T . . END=10075694 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10075695 . C . . END=10075695 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,898 +20 10075696 . C . . END=10075700 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10075701 . T . . END=10075703 GT:DP:GQ:MIN_DP:PL 0/0:31:71:31:0,71,933 +20 10075704 . C . . END=10075708 GT:DP:GQ:MIN_DP:PL 0/0:31:81:28:0,81,851 +20 10075709 . G . . END=10075709 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,842 +20 10075710 . A . . END=10075712 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10075713 . T . . END=10075713 GT:DP:GQ:MIN_DP:PL 0/0:28:55:28:0,55,814 +20 10075714 . T . . END=10075719 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10075720 . T . . END=10075720 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,939 +20 10075721 . T . . END=10075726 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1099 +20 10075727 . C . . END=10075766 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1085 +20 10075767 . A . . END=10075767 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1241 +20 10075768 . T . . END=10075781 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,111,1195 +20 10075782 . T . . END=10075782 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1193 +20 10075783 . C . . END=10075926 GT:DP:GQ:MIN_DP:PL 0/0:52:99:39:0,101,1196 +20 10075927 . T C, 550.77 . BaseQRankSum=-1.298;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=180000,50;ReadPosRankSum=-1.755 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:579,0,718,660,787,1448:16,11,12,11 +20 10075928 . A . . END=10076188 GT:DP:GQ:MIN_DP:PL 0/0:54:99:46:0,108,1340 +20 10076189 . T . . END=10076189 GT:DP:GQ:MIN_DP:PL 0/0:46:95:46:0,95,1312 +20 10076190 . G . . END=10076195 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,106,1307 +20 10076196 . A . . END=10076196 GT:DP:GQ:MIN_DP:PL 0/0:45:93:45:0,93,1301 +20 10076197 . A . . END=10076249 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,104,1086 +20 10076250 . A G, 1198.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1227,129,0,1227,129,1227:0,0,25,18 +20 10076251 . A . . END=10076275 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,111,1665 +20 10076276 . C . . END=10076276 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1144 +20 10076277 . A . . END=10076287 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,104,1189 +20 10076288 . A . . END=10076288 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1213 +20 10076289 . C . . END=10076289 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1115 +20 10076290 . C . . END=10076292 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,106,1300 +20 10076293 . G . . END=10076293 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1126 +20 10076294 . C . . END=10076301 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,107,1181 +20 10076302 . C . . END=10076302 GT:DP:GQ:MIN_DP:PL 0/0:45:73:45:0,73,1206 +20 10076303 . A . . END=10076338 GT:DP:GQ:MIN_DP:PL 0/0:49:99:45:0,99,1185 +20 10076339 . A G, 1568.77 . DP=55;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=198000,55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1597,164,0,1597,164,1597:0,0,18,37 +20 10076340 . A . . END=10076398 GT:DP:GQ:MIN_DP:PL 0/0:57:99:47:0,110,1369 +20 10076399 . G A, 1324.77 . DP=45;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=162000,45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1353,133,0,1353,133,1353:0,0,16,29 +20 10076400 . G . . END=10076410 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,115,1400 +20 10076411 . A . . END=10076411 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1198 +20 10076412 . G . . END=10076412 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,117,1174 +20 10076413 . G . . END=10076413 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1153 +20 10076414 . G . . END=10076418 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,104,1121 +20 10076419 . A . . END=10076419 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1224 +20 10076420 . G . . END=10076444 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1220 +20 10076445 . T . . END=10076445 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1216 +20 10076446 . T . . END=10076446 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1106 +20 10076447 . T . . END=10076447 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +20 10076448 . T . . END=10076448 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1226 +20 10076449 . A . . END=10076451 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,101,1053 +20 10076452 . C . . END=10076452 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,947 +20 10076453 . A . . END=10076453 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1063 +20 10076454 . A . . END=10076454 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1093 +20 10076455 . G . . END=10076455 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10076456 . T . . END=10076456 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10076457 . G . . END=10076457 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1031 +20 10076458 . A . . END=10076458 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10076459 . G . . END=10076459 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1031 +20 10076460 . A . . END=10076461 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20 10076462 . A . . END=10076462 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10076463 . A . . END=10076467 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,964 +20 10076468 . T . . END=10076469 GT:DP:GQ:MIN_DP:PL 0/0:34:68:33:0,68,882 +20 10076470 . A . . END=10076470 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,972 +20 10076471 . A . . END=10076471 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10076472 . C . . END=10076479 GT:DP:GQ:MIN_DP:PL 0/0:32:71:29:0,71,844 +20 10076480 . A . . END=10076480 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,1035 +20 10076481 . A . . END=10076481 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,819 +20 10076482 . T . . END=10076483 GT:DP:GQ:MIN_DP:PL 0/0:30:69:29:0,69,815 +20 10076484 . C . . END=10076488 GT:DP:GQ:MIN_DP:PL 0/0:27:70:26:0,70,821 +20 10076489 . T . . END=10076489 GT:DP:GQ:MIN_DP:PL 0/0:27:52:27:0,52,712 +20 10076490 . A . . END=10076492 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,848 +20 10076493 . G . . END=10076494 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,707 +20 10076495 . A . . END=10076495 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,771 +20 10076496 . T . . END=10076496 GT:DP:GQ:MIN_DP:PL 0/0:27:48:27:0,48,732 +20 10076497 . A . . END=10076504 GT:DP:GQ:MIN_DP:PL 0/0:27:64:26:0,64,769 +20 10076505 . G . . END=10076505 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10076506 . A . . END=10076507 GT:DP:GQ:MIN_DP:PL 0/0:26:69:25:0,69,1035 +20 10076508 . G . . END=10076509 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10076510 . C . . END=10076510 GT:DP:GQ:MIN_DP:PL 0/0:25:64:25:0,64,678 +20 10076511 . A . . END=10076512 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,766 +20 10076513 . C . . END=10076513 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,775 +20 10076514 . T . . END=10076521 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20 10076522 . T . . END=10076527 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,836 +20 10076528 . T . . END=10076536 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,897 +20 10076537 . A . . END=10076538 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10076539 . A . . END=10076539 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10076540 . A . . END=10076544 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1034 +20 10076545 . A . . END=10076546 GT:DP:GQ:MIN_DP:PL 0/0:37:76:36:0,76,1000 +20 10076547 . A . . END=10076557 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1089 +20 10076558 . T . . END=10076569 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10076570 . G . . END=10076575 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10076576 . A . . END=10076579 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10076580 . A . . END=10076580 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,918 +20 10076581 . G . . END=10076599 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,949 +20 10076600 . G . . END=10076645 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1081 +20 10076646 . T . . END=10076646 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1184 +20 10076647 . T . . END=10076685 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1151 +20 10076686 . A . . END=10076690 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10076691 . A . . END=10076691 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10076692 . G . . END=10076692 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1022 +20 10076693 . T . . END=10076696 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1052 +20 10076697 . G . . END=10076697 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1046 +20 10076698 . A . . END=10076706 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1056 +20 10076707 . A . . END=10076708 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10076709 . T . . END=10076748 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1142 +20 10076749 . G A, 1238.77 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1267,114,0,1267,114,1267:0,0,24,14 +20 10076750 . C . . END=10076760 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1172 +20 10076761 . G . . END=10076761 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1066 +20 10076762 . T . . END=10076762 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1087 +20 10076763 . G . . END=10076790 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,100,1069 +20 10076791 . C . . END=10076791 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1136 +20 10076792 . T . . END=10076792 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20 10076793 . C . . END=10076793 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1122 +20 10076794 . A . . END=10076795 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10076796 . A G, 1135.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1164,111,0,1164,111,1164:0,0,21,16 +20 10076797 . A . . END=10076799 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20 10076800 . T . . END=10076800 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1207 +20 10076801 . G . . END=10076817 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1238 +20 10076818 . C . . END=10076818 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1108 +20 10076819 . C . . END=10076819 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1158 +20 10076820 . T . . END=10076820 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1108 +20 10076821 . C . . END=10076859 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,108,1171 +20 10076860 . A C, 1198.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154800,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1227,129,0,1227,129,1227:0,0,19,24 +20 10076861 . G . . END=10076893 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,107,1241 +20 10076894 . T . . END=10076894 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1220 +20 10076895 . T . . END=10076899 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,106,1236 +20 10076900 . G . . END=10076900 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1189 +20 10076901 . G . . END=10076903 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,108,1620 +20 10076904 . G . . END=10076904 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1141 +20 10076905 . T . . END=10076908 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10076909 . G . . END=10076912 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20 10076913 . T . . END=10076918 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10076919 . G . . END=10076919 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1180 +20 10076920 . A . . END=10076922 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10076923 . C . . END=10076923 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1057 +20 10076924 . A . . END=10076924 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10076925 . G . . END=10076925 GT:DP:GQ:MIN_DP:PL 0/0:37:66:37:0,66,1018 +20 10076926 . A . . END=10076931 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10076932 . C . . END=10076933 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1070 +20 10076934 . T . . END=10076934 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1037 +20 10076935 . A . . END=10076936 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10076937 . A . . END=10076937 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10076938 . T . . END=10076938 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1050 +20 10076939 . A . . END=10076941 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +20 10076942 . G . . END=10076942 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,997 +20 10076943 . C . . END=10076944 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20 10076945 . T . . END=10076945 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,999 +20 10076946 . C . . END=10076946 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +20 10076947 . A . . END=10076947 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,1035 +20 10076948 . T . . END=10076948 GT:DP:GQ:MIN_DP:PL 0/0:31:31:31:0,31,815 +20 10076949 . C . . END=10076951 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,912 +20 10076952 . G . . END=10076952 GT:DP:GQ:MIN_DP:PL 0/0:31:37:31:0,37,829 +20 10076953 . A . . END=10076959 GT:DP:GQ:MIN_DP:PL 0/0:29:66:28:0,66,793 +20 10076960 . T . . END=10076960 GT:DP:GQ:MIN_DP:PL 0/0:28:52:28:0,52,776 +20 10076961 . C . . END=10076974 GT:DP:GQ:MIN_DP:PL 0/0:30:60:29:0,60,900 +20 10076975 . A . . END=10076976 GT:DP:GQ:MIN_DP:PL 0/0:29:54:27:0,54,810 +20 10076977 . T . . END=10076978 GT:DP:GQ:MIN_DP:PL 0/0:29:51:28:0,51,765 +20 10076979 . G . . END=10076979 GT:DP:GQ:MIN_DP:PL 0/0:30:42:30:0,42,779 +20 10076980 . A . . END=10076980 GT:DP:GQ:MIN_DP:PL 0/0:32:48:32:0,48,720 +20 10076981 . C . . END=10076981 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,730 +20 10076982 . C . . END=10076982 GT:DP:GQ:MIN_DP:PL 0/0:30:41:30:0,41,751 +20 10076983 . T . . END=10076984 GT:DP:GQ:MIN_DP:PL 0/0:32:0:29:0,0,619 +20 10076985 . A . . END=10076985 GT:DP:GQ:MIN_DP:PL 0/0:37:48:37:0,48,720 +20 10076986 . G . . END=10076986 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,321 +20 10076987 . A . . END=10076987 GT:DP:GQ:MIN_DP:PL 0/0:39:54:39:0,54,810 +20 10076988 . C . . END=10076988 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,377 +20 10076989 . C CAAAA, 926.73 . BaseQRankSum=-0.176;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=-0.167;RAW_MQandDP=93200,27;ReadPosRankSum=0.087 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:1,19,0:20:62:0|1:10076989_C_CAAAA:964,62,0,967,69,975:1,0,12,7 +20 10076990 . A . . END=10076990 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,382 +20 10076991 . A . . END=10076995 GT:DP:GQ:MIN_DP:PL 0/0:37:75:36:0,75,1125 +20 10076996 . A . . END=10076998 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1215 +20 10076999 . A . . END=10077000 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1125 +20 10077001 . A . . END=10077007 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1215 +20 10077008 . T A, 0 . BaseQRankSum=-1.748;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.725;RAW_MQandDP=94800,28;ReadPosRankSum=-0.603 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:23,3,0:26:7:0|1:10076989_C_CAAAA:0,7,855,69,864,926:11,12,3,0 +20 10077009 . A . . END=10077009 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1170 +20 10077010 . G A, 0 . BaseQRankSum=-2.200;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.558;RAW_MQandDP=86000,25;ReadPosRankSum=-0.172 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:21,2,0:23:7:0|1:10076989_C_CAAAA:0,7,855,69,864,925:10,11,2,0 +20 10077011 . A . . END=10077012 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 +20 10077013 . A . . END=10077013 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20 10077014 . A . . END=10077014 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,971 +20 10077015 . T A, 0 . BaseQRankSum=-1.628;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.442;RAW_MQandDP=86000,25;ReadPosRankSum=1.180 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:24,1,0:25:18:0|1:10076989_C_CAAAA:0,18,932,72,938,993:13,11,1,0 +20 10077016 . A . . END=10077016 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10077017 . G . . END=10077018 GT:DP:GQ:MIN_DP:PL 0/0:31:57:31:0,57,863 +20 10077019 . T . . END=10077025 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,952 +20 10077026 . A . . END=10077029 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,991 +20 10077030 . T . . END=10077030 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,972 +20 10077031 . G . . END=10077035 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,992 +20 10077036 . A . . END=10077038 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1055 +20 10077039 . A . . END=10077039 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1026 +20 10077040 . G . . END=10077042 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1007 +20 10077043 . A . . END=10077059 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10077060 . A . . END=10077060 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10077061 . A . . END=10077071 GT:DP:GQ:MIN_DP:PL 0/0:35:82:33:0,82,1011 +20 10077072 . A . . END=10077074 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,958 +20 10077075 . T . . END=10077075 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10077076 . T . . END=10077079 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,987 +20 10077080 . A . . END=10077087 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1050 +20 10077088 . T . . END=10077088 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,993 +20 10077089 . T . . END=10077099 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1056 +20 10077100 . C . . END=10077100 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1131 +20 10077101 . C . . END=10077105 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1078 +20 10077106 . G . . END=10077106 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1073 +20 10077107 . C . . END=10077112 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10077113 . A . . END=10077113 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1106 +20 10077114 . A . . END=10077174 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1127 +20 10077175 . T . . END=10077175 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1144 +20 10077176 . G . . END=10077197 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1207 +20 10077198 . T . . END=10077198 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1270 +20 10077199 . T . . END=10077244 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,103,1163 +20 10077245 . G . . END=10077245 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1092 +20 10077246 . G . . END=10077258 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,108,1125 +20 10077259 . C . . END=10077259 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1151 +20 10077260 . C . . END=10077266 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,111,1665 +20 10077267 . A T, 1687.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,39,0:39:99:0|1:10077267_A_T:1716,117,0,1716,117,1716:0,0,22,17 +20 10077268 . G . . END=10077274 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +20 10077275 . A G, 1690.77 . DP=40;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=144000,40 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,38,0:38:99:0|1:10077267_A_T:1719,117,0,1719,117,1719:0,0,20,18 +20 10077276 . A . . END=10077279 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1530 +20 10077280 . T . . END=10077280 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1146 +20 10077281 . A . . END=10077296 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,104,1178 +20 10077297 . C . . END=10077297 GT:DP:GQ:MIN_DP:PL 0/0:44:84:44:0,84,1233 +20 10077298 . A . . END=10077306 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,111,1318 +20 10077307 . G . . END=10077307 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1201 +20 10077308 . A . . END=10077614 GT:DP:GQ:MIN_DP:PL 0/0:48:99:39:0,99,1193 +20 10077615 . C . . END=10077615 GT:DP:GQ:MIN_DP:PL 0/0:42:61:42:0,61,1247 +20 10077616 . A . . END=10077620 GT:DP:GQ:MIN_DP:PL 0/0:43:92:42:0,92,1088 +20 10077621 . C . . END=10077621 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1198 +20 10077622 . G . . END=10077767 GT:DP:GQ:MIN_DP:PL 0/0:53:99:44:0,99,1170 +20 10077768 . A . . END=10077768 GT:DP:GQ:MIN_DP:PL 0/0:47:91:47:0,91,1379 +20 10077769 . G . . END=10077781 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,99,1211 +20 10077782 . T . . END=10077785 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1350 +20 10077786 . C . . END=10077788 GT:DP:GQ:MIN_DP:PL 0/0:43:84:43:0,84,1260 +20 10077789 . A . . END=10077794 GT:DP:GQ:MIN_DP:PL 0/0:42:72:40:0,72,1080 +20 10077795 . G . . END=10077797 GT:DP:GQ:MIN_DP:PL 0/0:42:60:42:0,60,900 +20 10077798 . A . . END=10077799 GT:DP:GQ:MIN_DP:PL 0/0:42:57:41:0,57,855 +20 10077800 . C . . END=10077800 GT:DP:GQ:MIN_DP:PL 0/0:39:54:39:0,54,810 +20 10077801 . T . . END=10077801 GT:DP:GQ:MIN_DP:PL 0/0:40:45:40:0,45,675 +20 10077802 . A . . END=10077802 GT:DP:GQ:MIN_DP:PL 0/0:40:42:40:0,42,630 +20 10077803 . A . . END=10077803 GT:DP:GQ:MIN_DP:PL 0/0:39:39:39:0,39,585 +20 10077804 . T . . END=10077804 GT:DP:GQ:MIN_DP:PL 0/0:40:33:40:0,33,495 +20 10077805 . T . . END=10077805 GT:DP:GQ:MIN_DP:PL 0/0:38:21:38:0,21,315 +20 10077806 . A . . END=10077806 GT:DP:GQ:MIN_DP:PL 0/0:37:18:37:0,18,270 +20 10077807 . T . . END=10077814 GT:DP:GQ:MIN_DP:PL 0/0:38:3:37:0,3,45 +20 10077815 . T . . END=10077819 GT:DP:GQ:MIN_DP:PL 0/0:39:0:38:0,0,0 +20 10077820 . TC T, 1238.73 . DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=126000,35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1276,105,0,1276,105,1276:0,0,18,17 +20 10077822 . T . . END=10077822 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,0 +20 10077823 . T . . END=10077823 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1170 +20 10077824 . T . . END=10077826 GT:DP:GQ:MIN_DP:PL 0/0:40:81:38:0,81,1215 +20 10077827 . T . . END=10077828 GT:DP:GQ:MIN_DP:PL 0/0:38:78:37:0,78,1170 +20 10077829 . T . . END=10077838 GT:DP:GQ:MIN_DP:PL 0/0:33:84:29:0,84,1260 +20 10077839 . A . . END=10077839 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,834 +20 10077840 . G . . END=10077843 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10077844 . G . . END=10077844 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,827 +20 10077845 . G . . END=10077848 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10077849 . G . . END=10077849 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10077850 . A . . END=10077851 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,840 +20 10077852 . C . . END=10077852 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,797 +20 10077853 . A . . END=10077853 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10077854 . G . . END=10077854 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10077855 . G . . END=10077858 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10077859 . T . . END=10077859 GT:DP:GQ:MIN_DP:PL 0/0:34:73:34:0,73,945 +20 10077860 . A . . END=10077862 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10077863 . T . . END=10077863 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1017 +20 10077864 . G . . END=10077865 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10077866 . T . . END=10077866 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,960 +20 10077867 . T . . END=10077867 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10077868 . A . . END=10077868 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1030 +20 10077869 . C . . END=10077869 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,923 +20 10077870 . A . . END=10077871 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10077872 . G . . END=10077873 GT:DP:GQ:MIN_DP:PL 0/0:35:83:35:0,83,1006 +20 10077874 . A . . END=10077877 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10077878 . G . . END=10077879 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1073 +20 10077880 . T . . END=10077989 GT:DP:GQ:MIN_DP:PL 0/0:44:99:35:0,102,1120 +20 10077990 . A . . END=10077990 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1155 +20 10077991 . C . . END=10077997 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1130 +20 10077998 . G . . END=10077998 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1026 +20 10077999 . C . . END=10078002 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,101,1183 +20 10078003 . C . . END=10078003 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1164 +20 10078004 . T . . END=10078005 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10078006 . A . . END=10078006 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1168 +20 10078007 . T . . END=10078012 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20 10078013 . A . . END=10078014 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1089 +20 10078015 . C . . END=10078017 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10078018 . C . . END=10078018 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1078 +20 10078019 . C . . END=10078028 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10078029 . T . . END=10078029 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1149 +20 10078030 . G . . END=10078033 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10078034 . A . . END=10078038 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10078039 . T . . END=10078040 GT:DP:GQ:MIN_DP:PL 0/0:36:87:35:0,87,1305 +20 10078041 . A . . END=10078041 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10078042 . G . . END=10078049 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +20 10078050 . T . . END=10078055 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +20 10078056 . T . . END=10078057 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,940 +20 10078058 . C . . END=10078064 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10078065 . T . . END=10078065 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10078066 . A . . END=10078066 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,963 +20 10078067 . C . . END=10078071 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1059 +20 10078072 . C . . END=10078072 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1010 +20 10078073 . T . . END=10078084 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1073 +20 10078085 . G . . END=10078086 GT:DP:GQ:MIN_DP:PL 0/0:38:95:37:0,95,1098 +20 10078087 . T . . END=10078090 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,101,1082 +20 10078091 . A . . END=10078091 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1091 +20 10078092 . C . . END=10078107 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1076 +20 10078108 . G . . END=10078108 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1121 +20 10078109 . T . . END=10078115 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10078116 . C . . END=10078116 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1096 +20 10078117 . A . . END=10078119 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10078120 . A . . END=10078120 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1183 +20 10078121 . T . . END=10078128 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,100,1114 +20 10078129 . C . . END=10078129 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1097 +20 10078130 . T . . END=10078137 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10078138 . G . . END=10078138 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1116 +20 10078139 . C . . END=10078145 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,104,1130 +20 10078146 . G . . END=10078146 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1164 +20 10078147 . T . . END=10078147 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20 10078148 . A . . END=10078148 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1202 +20 10078149 . T . . END=10078161 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1218 +20 10078162 . A . . END=10078162 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1251 +20 10078163 . T . . END=10078206 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,103,1236 +20 10078207 . G . . END=10078207 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1177 +20 10078208 . G . . END=10078314 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,104,1208 +20 10078315 . T . . END=10078315 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1128 +20 10078316 . C . . END=10078344 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,100,1217 +20 10078345 . A . . END=10078345 GT:DP:GQ:MIN_DP:PL 0/0:39:71:39:0,71,1101 +20 10078346 . G . . END=10078389 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,104,1168 +20 10078390 . A . . END=10078390 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1266 +20 10078391 . G . . END=10078403 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,102,1226 +20 10078404 . T . . END=10078404 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1294 +20 10078405 . T . . END=10078418 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,104,1300 +20 10078419 . G . . END=10078419 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1280 +20 10078420 . C . . END=10078451 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,104,1198 +20 10078452 . A . . END=10078452 GT:DP:GQ:MIN_DP:PL 0/0:41:77:41:0,77,1201 +20 10078453 . T . . END=10078469 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1113 +20 10078470 . A . . END=10078470 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1111 +20 10078471 . T . . END=10078493 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,101,1134 +20 10078494 . A . . END=10078494 GT:DP:GQ:MIN_DP:PL 0/0:39:73:39:0,73,1094 +20 10078495 . T . . END=10078495 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +20 10078496 . A . . END=10078504 GT:DP:GQ:MIN_DP:PL 0/0:40:93:37:0,93,1182 +20 10078505 . G A, 1147.77 . DP=37;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1176,105,0,1176,105,1176:0,0,17,18 +20 10078506 . G . . END=10078512 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20 10078513 . G . . END=10078514 GT:DP:GQ:MIN_DP:PL 0/0:34:77:33:0,77,1003 +20 10078515 . G . . END=10078515 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1013 +20 10078516 . T . . END=10078516 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10078517 . A . . END=10078517 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,943 +20 10078518 . T . . END=10078519 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1012 +20 10078520 . T . . END=10078527 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1142 +20 10078528 . A . . END=10078528 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10078529 . G . . END=10078529 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1006 +20 10078530 . A . . END=10078530 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,964 +20 10078531 . A . . END=10078542 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1049 +20 10078543 . T . . END=10078545 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10078546 . C . . END=10078551 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10078552 . C . . END=10078552 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,976 +20 10078553 . C . . END=10078554 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10078555 . A . . END=10078556 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +20 10078557 . T . . END=10078562 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,960 +20 10078563 . A . . END=10078563 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,906 +20 10078564 . T . . END=10078565 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10078566 . G . . END=10078566 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1068 +20 10078567 . G . . END=10078570 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,103,1134 +20 10078571 . A . . END=10078571 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1081 +20 10078572 . T . . END=10078601 GT:DP:GQ:MIN_DP:PL 0/0:46:99:38:0,104,1286 +20 10078602 . C . . END=10078602 GT:DP:GQ:MIN_DP:PL 0/0:48:98:48:0,98,1349 +20 10078603 . C . . END=10078615 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,108,1260 +20 10078616 . G . . END=10078616 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1192 +20 10078617 . A . . END=10078855 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,99,1194 +20 10078856 . A . . END=10078857 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1350 +20 10078858 . G . . END=10078859 GT:DP:GQ:MIN_DP:PL 0/0:43:81:43:0,81,1215 +20 10078860 . T . . END=10078863 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1080 +20 10078864 . A . . END=10078869 GT:DP:GQ:MIN_DP:PL 0/0:45:69:44:0,69,1035 +20 10078870 . G . . END=10078871 GT:DP:GQ:MIN_DP:PL 0/0:44:57:42:0,57,855 +20 10078872 . C . . END=10078873 GT:DP:GQ:MIN_DP:PL 0/0:45:54:45:0,54,810 +20 10078874 . T . . END=10078879 GT:DP:GQ:MIN_DP:PL 0/0:46:48:45:0,48,720 +20 10078880 . C . . END=10078882 GT:DP:GQ:MIN_DP:PL 0/0:41:45:41:0,45,675 +20 10078883 . A . . END=10078885 GT:DP:GQ:MIN_DP:PL 0/0:42:42:40:0,42,630 +20 10078886 . A . . END=10078886 GT:DP:GQ:MIN_DP:PL 0/0:43:36:43:0,36,540 +20 10078887 . T . . END=10078887 GT:DP:GQ:MIN_DP:PL 0/0:43:33:43:0,33,495 +20 10078888 . G . . END=10078889 GT:DP:GQ:MIN_DP:PL 0/0:43:27:42:0,27,405 +20 10078890 . C . . END=10078891 GT:DP:GQ:MIN_DP:PL 0/0:42:18:42:0,18,270 +20 10078892 . A . . END=10078892 GT:DP:GQ:MIN_DP:PL 0/0:42:15:42:0,15,225 +20 10078893 . A . . END=10078894 GT:DP:GQ:MIN_DP:PL 0/0:44:12:43:0,12,180 +20 10078895 . T . . END=10078896 GT:DP:GQ:MIN_DP:PL 0/0:45:6:45:0,6,90 +20 10078897 . T TA, 1181.73 . DP=42;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=151200,42 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1219,129,0,1219,129,1219:0,0,19,21 +20 10078898 . A . . END=10078898 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +20 10078899 . A . . END=10078907 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,111,1322 +20 10078908 . T . . END=10078908 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1279 +20 10078909 . A . . END=10079064 GT:DP:GQ:MIN_DP:PL 0/0:51:99:43:0,101,1354 +20 10079065 . T C, 1093.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1122,116,0,1122,116,1122:0,0,18,21 +20 10079066 . G . . END=10079103 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,101,1171 +20 10079104 . G . . END=10079104 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1160 +20 10079105 . A . . END=10079110 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1150 +20 10079111 . G . . END=10079113 GT:DP:GQ:MIN_DP:PL 0/0:37:92:36:0,92,1028 +20 10079114 . C . . END=10079114 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1044 +20 10079115 . A . . END=10079115 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10079116 . C . . END=10079116 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1040 +20 10079117 . T . . END=10079118 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10079119 . C . . END=10079119 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1037 +20 10079120 . T . . END=10079122 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10079123 . G . . END=10079123 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1009 +20 10079124 . T . . END=10079133 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10079134 . A . . END=10079136 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1260 +20 10079137 . A . . END=10079140 GT:DP:GQ:MIN_DP:PL 0/0:39:90:37:0,90,1350 +20 10079141 . A . . END=10079142 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10079143 . T . . END=10079143 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1119 +20 10079144 . A . . END=10079145 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10079146 . A . . END=10079146 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1083 +20 10079147 . T . . END=10079151 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10079152 . T . . END=10079154 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10079155 . T . . END=10079180 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1159 +20 10079181 . A . . END=10079181 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1251 +20 10079182 . T . . END=10079187 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,117,1302 +20 10079188 . C . . END=10079188 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1161 +20 10079189 . A . . END=10079216 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,106,1231 +20 10079217 . G . . END=10079217 GT:DP:GQ:MIN_DP:PL 0/0:45:98:45:0,98,1252 +20 10079218 . T . . END=10079237 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,113,1352 +20 10079238 . G . . END=10079238 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1298 +20 10079239 . A . . END=10079246 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,113,1301 +20 10079247 . G . . END=10079247 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1246 +20 10079248 . T . . END=10079253 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,111,1209 +20 10079254 . A . . END=10079254 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1341 +20 10079255 . A . . END=10079395 GT:DP:GQ:MIN_DP:PL 0/0:49:99:42:0,101,1241 +20 10079396 . A G, 1404.77 . DP=51;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=183600,51 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1433,150,0,1433,150,1433:0,0,26,24 +20 10079397 . C . . END=10079451 GT:DP:GQ:MIN_DP:PL 0/0:52:99:39:0,105,1172 +20 10079452 . A . . END=10079452 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1105 +20 10079453 . A . . END=10079454 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10079455 . A . . END=10079461 GT:DP:GQ:MIN_DP:PL 0/0:39:90:37:0,90,1350 +20 10079462 . T . . END=10079462 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10079463 . T . . END=10079466 GT:DP:GQ:MIN_DP:PL 0/0:40:90:39:0,90,1350 +20 10079467 . A . . END=10079468 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1485 +20 10079469 . A . . END=10079469 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1395 +20 10079470 . G . . END=10079470 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1124 +20 10079471 . G . . END=10079475 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 +20 10079476 . T . . END=10079476 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1012 +20 10079477 . A . . END=10079477 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10079478 . A . . END=10079481 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10079482 . A . . END=10079482 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1087 +20 10079483 . A . . END=10079490 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1067 +20 10079491 . G . . END=10079491 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1102 +20 10079492 . G . . END=10079494 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10079495 . G . . END=10079495 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1127 +20 10079496 . A . . END=10079496 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10079497 . A . . END=10079497 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1157 +20 10079498 . A . . END=10079498 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10079499 . T . . END=10079499 GT:DP:GQ:MIN_DP:PL 0/0:36:63:36:0,63,1020 +20 10079500 . A . . END=10079503 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10079504 . A . . END=10079504 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1120 +20 10079505 . G . . END=10079508 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1065 +20 10079509 . T . . END=10079509 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1057 +20 10079510 . T . . END=10079519 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,100,1115 +20 10079520 . A . . END=10079520 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1225 +20 10079521 . T . . END=10079566 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,110,1253 +20 10079567 . G . . END=10079567 GT:DP:GQ:MIN_DP:PL 0/0:44:81:44:0,81,1289 +20 10079568 . C . . END=10079575 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,120,1800 +20 10079576 . G . . END=10079576 GT:DP:GQ:MIN_DP:PL 0/0:42:85:42:0,85,1240 +20 10079577 . G . . END=10079693 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,100,1193 +20 10079694 . T . . END=10079695 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1275 +20 10079696 . G . . END=10079696 GT:DP:GQ:MIN_DP:PL 0/0:41:71:41:0,71,1166 +20 10079697 . A . . END=10079699 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,99,1485 +20 10079700 . A . . END=10079704 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1350 +20 10079705 . A . . END=10079710 GT:DP:GQ:MIN_DP:PL 0/0:39:84:37:0,84,1260 +20 10079711 . T . . END=10079718 GT:DP:GQ:MIN_DP:PL 0/0:36:72:34:0,72,1080 +20 10079719 . T . . END=10079725 GT:DP:GQ:MIN_DP:PL 0/0:35:63:33:0,63,945 +20 10079726 . A . . END=10079729 GT:DP:GQ:MIN_DP:PL 0/0:36:54:35:0,54,810 +20 10079730 . C . . END=10079730 GT:DP:GQ:MIN_DP:PL 0/0:38:51:38:0,51,765 +20 10079731 . A . . END=10079731 GT:DP:GQ:MIN_DP:PL 0/0:38:42:38:0,42,630 +20 10079732 . T . . END=10079737 GT:DP:GQ:MIN_DP:PL 0/0:39:39:39:0,39,585 +20 10079738 . A . . END=10079738 GT:DP:GQ:MIN_DP:PL 0/0:39:36:39:0,36,540 +20 10079739 . C . . END=10079739 GT:DP:GQ:MIN_DP:PL 0/0:38:33:38:0,33,495 +20 10079740 . T . . END=10079742 GT:DP:GQ:MIN_DP:PL 0/0:38:24:38:0,24,360 +20 10079743 . A . . END=10079744 GT:DP:GQ:MIN_DP:PL 0/0:38:18:38:0,18,270 +20 10079745 . A . . END=10079747 GT:DP:GQ:MIN_DP:PL 0/0:39:15:39:0,15,225 +20 10079748 . T . . END=10079751 GT:DP:GQ:MIN_DP:PL 0/0:39:12:38:0,12,180 +20 10079752 . T . . END=10079752 GT:DP:GQ:MIN_DP:PL 0/0:39:9:39:0,9,135 +20 10079753 . A . . END=10079758 GT:DP:GQ:MIN_DP:PL 0/0:40:3:39:0,3,45 +20 10079759 . A . . END=10079759 GT:DP:GQ:MIN_DP:PL 0/0:43:6:43:0,6,90 +20 10079760 . T . . END=10079760 GT:DP:GQ:MIN_DP:PL 0/0:42:9:42:0,9,135 +20 10079761 . T TAA, 1826.73 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1864,126,0,1864,126,1864:0,0,22,19 +20 10079762 . G . . END=10079762 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,0 +20 10079763 . T . . END=10079763 GT:DP:GQ:MIN_DP:PL 0/0:43:28:43:0,28,1126 +20 10079764 . G . . END=10079765 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,114,1710 +20 10079766 . C . . END=10079766 GT:DP:GQ:MIN_DP:PL 0/0:42:67:42:0,67,1172 +20 10079767 . A . . END=10079790 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,103,1194 +20 10079791 . C . . END=10079791 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1176 +20 10079792 . T . . END=10079798 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10079799 . G . . END=10079799 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1091 +20 10079800 . T . . END=10079805 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20 10079806 . G . . END=10079806 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1135 +20 10079807 . A . . END=10079814 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10079815 . G . . END=10079815 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1032 +20 10079816 . T . . END=10079820 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,101,1220 +20 10079821 . C G, 1130.77 . DP=36;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1159,108,0,1159,108,1159:0,0,19,17 +20 10079822 . A . . END=10079993 GT:DP:GQ:MIN_DP:PL 0/0:50:99:39:0,108,1281 +20 10079994 . C . . END=10079994 GT:DP:GQ:MIN_DP:PL 0/0:44:80:44:0,80,1196 +20 10079995 . A . . END=10080024 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,101,1133 +20 10080025 . C . . END=10080025 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1155 +20 10080026 . A . . END=10080054 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,105,1069 +20 10080055 . T . . END=10080055 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1125 +20 10080056 . G . . END=10080070 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1083 +20 10080071 . T . . END=10080071 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1033 +20 10080072 . G . . END=10080078 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10080079 . C . . END=10080079 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,877 +20 10080080 . A . . END=10080083 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10080084 . A . . END=10080084 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1001 +20 10080085 . A . . END=10080094 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1009 +20 10080095 . A . . END=10080095 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1117 +20 10080096 . A . . END=10080096 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1122 +20 10080097 . C . . END=10080135 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1101 +20 10080136 . T . . END=10080137 GT:DP:GQ:MIN_DP:PL 0/0:40:82:40:0,82,1106 +20 10080138 . A . . END=10080138 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +20 10080139 . A . . END=10080139 GT:DP:GQ:MIN_DP:PL 0/0:42:76:42:0,76,1214 +20 10080140 . C . . END=10080168 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,101,1206 +20 10080169 . T . . END=10080169 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1265 +20 10080170 . T . . END=10080175 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,112,1279 +20 10080176 . G . . END=10080176 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1172 +20 10080177 . T . . END=10080180 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,119,1224 +20 10080181 . A . . END=10080181 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1259 +20 10080182 . C . . END=10080282 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,101,1253 +20 10080283 . C . . END=10080283 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1193 +20 10080284 . T . . END=10080285 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +20 10080286 . T . . END=10080286 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1182 +20 10080287 . T . . END=10080291 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,111,1210 +20 10080292 . T . . END=10080292 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1269 +20 10080293 . G . . END=10080549 GT:DP:GQ:MIN_DP:PL 0/0:53:99:38:0,105,1180 +20 10080550 . G . . END=10080550 GT:DP:GQ:MIN_DP:PL 0/0:60:25:60:0,25,1367 +20 10080551 . A . . END=10080551 GT:DP:GQ:MIN_DP:PL 0/0:62:50:62:0,50,1706 +20 10080552 . A . . END=10080561 GT:DP:GQ:MIN_DP:PL 0/0:64:99:61:0,120,1800 +20 10080562 . C . . END=10080562 GT:DP:GQ:MIN_DP:PL 0/0:59:83:59:0,83,1562 +20 10080563 . A . . END=10080566 GT:DP:GQ:MIN_DP:PL 0/0:60:99:53:0,120,1800 +20 10080567 . G . . END=10080567 GT:DP:GQ:MIN_DP:PL 0/0:59:69:59:0,69,1401 +20 10080568 . A . . END=10080601 GT:DP:GQ:MIN_DP:PL 0/0:55:99:44:0,101,1258 +20 10080602 . T . . END=10080602 GT:DP:GQ:MIN_DP:PL 0/0:43:77:43:0,77,1116 +20 10080603 . T . . END=10080743 GT:DP:GQ:MIN_DP:PL 0/0:54:99:46:0,106,1259 +20 10080744 . C . . END=10080744 GT:DP:GQ:MIN_DP:PL 0/0:53:89:53:0,89,1446 +20 10080745 . A . . END=10080769 GT:DP:GQ:MIN_DP:PL 0/0:49:99:43:0,119,1435 +20 10080770 . T . . END=10080770 GT:DP:GQ:MIN_DP:PL 0/0:48:94:48:0,94,1393 +20 10080771 . A . . END=10080825 GT:DP:GQ:MIN_DP:PL 0/0:50:99:44:0,117,1447 +20 10080826 . T . . END=10080826 GT:DP:GQ:MIN_DP:PL 0/0:50:90:50:0,90,1439 +20 10080827 . A . . END=10080857 GT:DP:GQ:MIN_DP:PL 0/0:51:99:46:0,109,1317 +20 10080858 . G . . END=10080858 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1316 +20 10080859 . T . . END=10080862 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1363 +20 10080863 . A . . END=10080863 GT:DP:GQ:MIN_DP:PL 0/0:45:94:45:0,94,1365 +20 10080864 . T . . END=10080882 GT:DP:GQ:MIN_DP:PL 0/0:49:99:46:0,120,1800 +20 10080883 . T . . END=10080883 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1343 +20 10080884 . A . . END=10081241 GT:DP:GQ:MIN_DP:PL 0/0:50:99:41:0,102,1294 +20 10081242 . T . . END=10081242 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1256 +20 10081243 . A . . END=10081245 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10081246 . T . . END=10081246 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1230 +20 10081247 . T . . END=10081247 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20 10081248 . A . . END=10081248 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1183 +20 10081249 . A . . END=10081255 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10081256 . G . . END=10081261 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20 10081262 . G . . END=10081264 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1305 +20 10081265 . G . . END=10081270 GT:DP:GQ:MIN_DP:PL 0/0:37:90:34:0,90,1350 +20 10081271 . T . . END=10081283 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10081284 . A . . END=10081284 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,884 +20 10081285 . C . . END=10081292 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10081293 . G . . END=10081293 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10081294 . C . . END=10081294 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,925 +20 10081295 . T . . END=10081296 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10081297 . A . . END=10081299 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1076 +20 10081300 . C . . END=10081300 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1005 +20 10081301 . A . . END=10081304 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10081305 . G . . END=10081308 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10081309 . C . . END=10081309 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,974 +20 10081310 . G . . END=10081313 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1042 +20 10081314 . G . . END=10081316 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1072 +20 10081317 . C . . END=10081318 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10081319 . T . . END=10081319 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1119 +20 10081320 . G . . END=10081325 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1096 +20 10081326 . T . . END=10081326 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,997 +20 10081327 . G . . END=10081327 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10081328 . G . . END=10081328 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1090 +20 10081329 . A . . END=10081330 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10081331 . G . . END=10081331 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1095 +20 10081332 . T . . END=10081332 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10081333 . T . . END=10081333 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1093 +20 10081334 . G . . END=10081347 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10081348 . T . . END=10081348 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1090 +20 10081349 . C . . END=10081350 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10081351 . T . . END=10081351 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1055 +20 10081352 . G . . END=10081352 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10081353 . C . . END=10081353 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,1016 +20 10081354 . C . . END=10081354 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10081355 . A . . END=10081355 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1059 +20 10081356 . C . . END=10081358 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1009 +20 10081359 . C . . END=10081359 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,997 +20 10081360 . A . . END=10081361 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10081362 . T . . END=10081362 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,941 +20 10081363 . C . . END=10081363 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,910 +20 10081364 . C . . END=10081364 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10081365 . A . . END=10081365 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1086 +20 10081366 . G . . END=10081369 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10081370 . G . . END=10081370 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1114 +20 10081371 . G . . END=10081374 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1575 +20 10081375 . A . . END=10081375 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1094 +20 10081376 . C . . END=10081378 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1070 +20 10081379 . T . . END=10081379 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1113 +20 10081380 . G . . END=10081381 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10081382 . G . . END=10081382 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1157 +20 10081383 . A . . END=10081384 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10081385 . A . . END=10081391 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1440 +20 10081392 . C . . END=10081392 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1037 +20 10081393 . T . . END=10081394 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10081395 . A . . END=10081395 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10081396 . A . . END=10081405 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10081406 . A . . END=10081406 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1209 +20 10081407 . A . . END=10081414 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1620 +20 10081415 . A . . END=10081415 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1186 +20 10081416 . C . . END=10081422 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,104,1189 +20 10081423 . T . . END=10081423 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1216 +20 10081424 . A . . END=10081437 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1212 +20 10081438 . G . . END=10081438 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1164 +20 10081439 . C . . END=10081448 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1575 +20 10081449 . C . . END=10081449 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1153 +20 10081450 . A . . END=10081576 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,102,1154 +20 10081577 . A . . END=10081577 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1122 +20 10081578 . C . . END=10081589 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1067 +20 10081590 . T . . END=10081590 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1111 +20 10081591 . A . . END=10081618 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1163 +20 10081619 . G . . END=10081619 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1119 +20 10081620 . G . . END=10081620 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1071 +20 10081621 . A . . END=10081623 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10081624 . G . . END=10081625 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1067 +20 10081626 . G . . END=10081626 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,100,1101 +20 10081627 . T . . END=10081627 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1028 +20 10081628 . T . . END=10081629 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10081630 . T . . END=10081630 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1141 +20 10081631 . T . . END=10081640 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10081641 . A . . END=10081643 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10081644 . A . . END=10081650 GT:DP:GQ:MIN_DP:PL 0/0:35:87:34:0,87,1305 +20 10081651 . A . . END=10081654 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10081655 . A . . END=10081659 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,923 +20 10081660 . C . . END=10081661 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10081662 . G . . END=10081662 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1071 +20 10081663 . G . . END=10081666 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10081667 . T . . END=10081677 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10081678 . G . . END=10081678 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,967 +20 10081679 . A . . END=10081680 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10081681 . A . . END=10081681 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10081682 . A . . END=10081692 GT:DP:GQ:MIN_DP:PL 0/0:33:91:32:0,91,1061 +20 10081693 . T . . END=10081695 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10081696 . C . . END=10081696 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10081697 . C . . END=10081697 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,953 +20 10081698 . G . . END=10081698 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10081699 . A . . END=10081710 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10081711 . G . . END=10081711 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,972 +20 10081712 . A . . END=10081732 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1145 +20 10081733 . A . . END=10081733 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1136 +20 10081734 . T . . END=10081743 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10081744 . G . . END=10081744 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1169 +20 10081745 . A . . END=10081749 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1116 +20 10081750 . C . . END=10081750 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1088 +20 10081751 . T . . END=10081774 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1072 +20 10081775 . T . . END=10081775 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1048 +20 10081776 . A . . END=10081787 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1193 +20 10081788 . T . . END=10081788 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1156 +20 10081789 . T . . END=10081852 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1143 +20 10081853 . T . . END=10081854 GT:DP:GQ:MIN_DP:PL 0/0:39:94:38:0,94,1123 +20 10081855 . T . . END=10081967 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,111,1224 +20 10081968 . C . . END=10081968 GT:DP:GQ:MIN_DP:PL 0/0:46:97:46:0,97,1329 +20 10081969 . A . . END=10082042 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,102,1297 +20 10082043 . G . . END=10082043 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1079 +20 10082044 . T . . END=10082044 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10082045 . T . . END=10082047 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10082048 . G . . END=10082048 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1163 +20 10082049 . G . . END=10082049 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10082050 . C . . END=10082056 GT:DP:GQ:MIN_DP:PL 0/0:35:92:34:0,92,1097 +20 10082057 . G . . END=10082057 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,949 +20 10082058 . A . . END=10082061 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10082062 . T . . END=10082062 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10082063 . C . . END=10082063 GT:DP:GQ:MIN_DP:PL 0/0:33:56:33:0,56,904 +20 10082064 . A . . END=10082067 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10082068 . A . . END=10082068 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10082069 . T . . END=10082069 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20 10082070 . G . . END=10082073 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10082074 . G . . END=10082075 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10082076 . G . . END=10082076 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,914 +20 10082077 . G . . END=10082078 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10082079 . C . . END=10082080 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10082081 . A . . END=10082082 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,945 +20 10082083 . T . . END=10082083 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10082084 . G . . END=10082084 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,972 +20 10082085 . G . . END=10082085 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,890 +20 10082086 . A . . END=10082086 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,927 +20 10082087 . G . . END=10082087 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,898 +20 10082088 . A . . END=10082090 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,972 +20 10082091 . T . . END=10082092 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1024 +20 10082093 . A . . END=10082093 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,993 +20 10082094 . T . . END=10082094 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1032 +20 10082095 . T . . END=10082095 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,988 +20 10082096 . G . . END=10082096 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,978 +20 10082097 . G . . END=10082097 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10082098 . A . . END=10082098 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1056 +20 10082099 . A . . END=10082105 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1052 +20 10082106 . C . . END=10082107 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10082108 . G . . END=10082108 GT:DP:GQ:MIN_DP:PL 0/0:36:69:36:0,69,1022 +20 10082109 . G . . END=10082110 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10082111 . C . . END=10082111 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10082112 . G . . END=10082112 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1106 +20 10082113 . T . . END=10082119 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,103,1068 +20 10082120 . A . . END=10082121 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1067 +20 10082122 . G . . END=10082126 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,103,1098 +20 10082127 . T . . END=10082127 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1069 +20 10082128 . T . . END=10082131 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10082132 . T . . END=10082132 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1138 +20 10082133 . T . . END=10082133 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20 10082134 . C . . END=10082134 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1033 +20 10082135 . A . . END=10082137 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10082138 . T . . END=10082138 GT:DP:GQ:MIN_DP:PL 0/0:36:67:36:0,67,1014 +20 10082139 . T . . END=10082140 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10082141 . T . . END=10082141 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1093 +20 10082142 . G . . END=10082148 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,108,1620 +20 10082149 . T . . END=10082149 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1110 +20 10082150 . C . . END=10082156 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10082157 . A . . END=10082157 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1197 +20 10082158 . G . . END=10082162 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +20 10082163 . T . . END=10082163 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1276 +20 10082164 . A . . END=10082318 GT:DP:GQ:MIN_DP:PL 0/0:49:99:38:0,99,1147 +20 10082319 . G . . END=10082319 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1319 +20 10082320 . C . . END=10082372 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,101,1299 +20 10082373 . T . . END=10082373 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1260 +20 10082374 . A . . END=10082447 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,108,1180 +20 10082448 . G . . END=10082448 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1180 +20 10082449 . A . . END=10082475 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,112,1170 +20 10082476 . A G, 523.77 . BaseQRankSum=1.251;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=-0.543 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:552,0,487,609,549,1158:10,9,13,8 +20 10082477 . C . . END=10082540 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,104,1252 +20 10082541 . C . . END=10082541 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1352 +20 10082542 . T . . END=10082636 GT:DP:GQ:MIN_DP:PL 0/0:52:99:45:0,104,1432 +20 10082637 . C . . END=10082637 GT:DP:GQ:MIN_DP:PL 0/0:48:96:48:0,96,1317 +20 10082638 . T . . END=10082803 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,99,1211 +20 10082804 . T . . END=10082804 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1286 +20 10082805 . T . . END=10082807 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20 10082808 . G . . END=10082808 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1217 +20 10082809 . A . . END=10082877 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1146 +20 10082878 . T . . END=10082878 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20 10082879 . A . . END=10082884 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1192 +20 10082885 . A . . END=10082885 GT:DP:GQ:MIN_DP:PL 0/0:38:77:38:0,77,1130 +20 10082886 . C . . END=10082891 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10082892 . C T, 938.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:967,93,0,967,93,967:0,0,17,14 +20 10082893 . C . . END=10082893 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1072 +20 10082894 . T . . END=10082894 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1085 +20 10082895 . C . . END=10082895 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1087 +20 10082896 . T . . END=10082896 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1100 +20 10082897 . T . . END=10082897 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1155 +20 10082898 . G . . END=10082898 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1054 +20 10082899 . C . . END=10082899 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1086 +20 10082900 . C . . END=10082913 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1102 +20 10082914 . C . . END=10082914 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1121 +20 10082915 . C . . END=10082938 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1017 +20 10082939 . C . . END=10082939 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1136 +20 10082940 . C . . END=10082942 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10082943 . G . . END=10082953 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,980 +20 10082954 . A . . END=10082954 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,983 +20 10082955 . C . . END=10082958 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20 10082959 . C . . END=10082959 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1018 +20 10082960 . C . . END=10082960 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10082961 . C . . END=10082961 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10082962 . C . . END=10082962 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10082963 . T . . END=10082963 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1084 +20 10082964 . C . . END=10082967 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10082968 . T . . END=10082971 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1115 +20 10082972 . T . . END=10082973 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10082974 . C . . END=10082975 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1124 +20 10082976 . C . . END=10082976 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10082977 . A . . END=10082983 GT:DP:GQ:MIN_DP:PL 0/0:37:93:33:0,93,1084 +20 10082984 . T . . END=10082984 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1052 +20 10082985 . C . . END=10082986 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10082987 . A . . END=10082987 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1133 +20 10082988 . A . . END=10082990 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20 10082991 . G . . END=10082998 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1130 +20 10082999 . G . . END=10082999 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,984 +20 10083000 . A . . END=10083000 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1067 +20 10083001 . T . . END=10083001 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10083002 . G . . END=10083002 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1024 +20 10083003 . A . . END=10083006 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10083007 . C . . END=10083007 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1032 +20 10083008 . C . . END=10083014 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1061 +20 10083015 . A . . END=10083016 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,933 +20 10083017 . G . . END=10083018 GT:DP:GQ:MIN_DP:PL 0/0:32:95:32:0,95,893 +20 10083019 . T . . END=10083019 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,960 +20 10083020 . T . . END=10083022 GT:DP:GQ:MIN_DP:PL 0/0:33:92:31:0,92,936 +20 10083023 . C . . END=10083028 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1041 +20 10083029 . A . . END=10083029 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1065 +20 10083030 . A . . END=10083046 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1026 +20 10083047 . T . . END=10083058 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10083059 . T . . END=10083059 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,972 +20 10083060 . T . . END=10083060 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10083061 . C . . END=10083062 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,918 +20 10083063 . T . . END=10083065 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10083066 . T . . END=10083066 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,895 +20 10083067 . C . . END=10083068 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10083069 . C . . END=10083069 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,894 +20 10083070 . T . . END=10083072 GT:DP:GQ:MIN_DP:PL 0/0:32:92:31:0,92,926 +20 10083073 . G . . END=10083073 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,847 +20 10083074 . T . . END=10083076 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,977 +20 10083077 . C . . END=10083077 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,862 +20 10083078 . T . . END=10083078 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1025 +20 10083079 . T . . END=10083079 GT:DP:GQ:MIN_DP:PL 0/0:34:63:34:0,63,991 +20 10083080 . T . . END=10083081 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1085 +20 10083082 . G . . END=10083082 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,999 +20 10083083 . A . . END=10083083 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10083084 . A . . END=10083084 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1057 +20 10083085 . T . . END=10083096 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1088 +20 10083097 . A . . END=10083097 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1273 +20 10083098 . G . . END=10083098 GT:DP:GQ:MIN_DP:PL 0/0:42:78:42:0,78,1162 +20 10083099 . A . . END=10083139 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1340 +20 10083140 . T . . END=10083142 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10083143 . T . . END=10083149 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10083150 . T . . END=10083150 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,978 +20 10083151 . T . . END=10083167 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1040 +20 10083168 . C . . END=10083168 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1180 +20 10083169 . T . . END=10083175 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1220 +20 10083176 . C . . END=10083176 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1132 +20 10083177 . C . . END=10083190 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,108,1141 +20 10083191 . A T, 483.77 . BaseQRankSum=-1.131;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=-0.680 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:512,0,452,566,512,1078:11,7,10,10 +20 10083192 . C . . END=10083211 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,109,1223 +20 10083212 . T . . END=10083212 GT:DP:GQ:MIN_DP:PL 0/0:43:83:43:0,83,1119 +20 10083213 . C . . END=10083230 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,108,1262 +20 10083231 . T . . END=10083231 GT:DP:GQ:MIN_DP:PL 0/0:44:74:44:0,74,1206 +20 10083232 . T . . END=10083238 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1620 +20 10083239 . G . . END=10083239 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1148 +20 10083240 . C . . END=10083277 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1101 +20 10083278 . G . . END=10083278 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1074 +20 10083279 . G . . END=10083279 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10083280 . G . . END=10083280 GT:DP:GQ:MIN_DP:PL 0/0:35:53:35:0,53,919 +20 10083281 . T . . END=10083282 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1090 +20 10083283 . A . . END=10083283 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1118 +20 10083284 . A . . END=10083291 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1150 +20 10083292 . G . . END=10083293 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1086 +20 10083294 . G . . END=10083294 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1043 +20 10083295 . A . . END=10083309 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20 10083310 . T . . END=10083310 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1097 +20 10083311 . T . . END=10083312 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1120 +20 10083313 . A . . END=10083313 GT:DP:GQ:MIN_DP:PL 0/0:37:71:37:0,71,1016 +20 10083314 . C . . END=10083341 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,105,1075 +20 10083342 . T . . END=10083342 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1205 +20 10083343 . G . . END=10083343 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,104,1211 +20 10083344 . G . . END=10083344 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1140 +20 10083345 . C . . END=10083349 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 +20 10083350 . T . . END=10083350 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1193 +20 10083351 . A . . END=10083384 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,105,1155 +20 10083385 . A . . END=10083385 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1160 +20 10083386 . A . . END=10083387 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10083388 . T . . END=10083388 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1155 +20 10083389 . T . . END=10083395 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20 10083396 . A . . END=10083396 GT:DP:GQ:MIN_DP:PL 0/0:41:67:41:0,67,1215 +20 10083397 . G . . END=10083454 GT:DP:GQ:MIN_DP:PL 0/0:47:99:42:0,106,1414 +20 10083455 . G . . END=10083455 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1236 +20 10083456 . T . . END=10083566 GT:DP:GQ:MIN_DP:PL 0/0:48:99:40:0,105,1312 +20 10083567 . G . . END=10083567 GT:DP:GQ:MIN_DP:PL 0/0:45:92:45:0,92,1279 +20 10083568 . T . . END=10083655 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,103,1143 +20 10083656 . T . . END=10083656 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1192 +20 10083657 . A . . END=10083663 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,112,1072 +20 10083664 . A . . END=10083664 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1165 +20 10083665 . A . . END=10083675 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1197 +20 10083676 . G . . END=10083676 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1207 +20 10083677 . G . . END=10083700 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1135 +20 10083701 . A . . END=10083705 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1150 +20 10083706 . G . . END=10083706 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +20 10083707 . A . . END=10083711 GT:DP:GQ:MIN_DP:PL 0/0:38:91:36:0,91,1073 +20 10083712 . C . . END=10083712 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,991 +20 10083713 . T . . END=10083714 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10083715 . C . . END=10083724 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1013 +20 10083725 . G . . END=10083725 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1014 +20 10083726 . G . . END=10083737 GT:DP:GQ:MIN_DP:PL 0/0:34:91:33:0,91,1009 +20 10083738 . A . . END=10083738 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,989 +20 10083739 . G . . END=10083739 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10083740 . T . . END=10083740 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,949 +20 10083741 . C . . END=10083741 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,984 +20 10083742 . A . . END=10083753 GT:DP:GQ:MIN_DP:PL 0/0:31:70:29:0,70,849 +20 10083754 . T . . END=10083754 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10083755 . G . . END=10083756 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10083757 . A . . END=10083757 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,920 +20 10083758 . G . . END=10083758 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10083759 . A . . END=10083759 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,913 +20 10083760 . C . . END=10083771 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,974 +20 10083772 . A . . END=10083772 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,862 +20 10083773 . C . . END=10083775 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10083776 . A . . END=10083776 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,896 +20 10083777 . A . . END=10083783 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20 10083784 . T . . END=10083784 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,813 +20 10083785 . T . . END=10083787 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,838 +20 10083788 . A . . END=10083789 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10083790 . T . . END=10083790 GT:DP:GQ:MIN_DP:PL 0/0:33:55:33:0,55,948 +20 10083791 . A . . END=10083797 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10083798 . A . . END=10083801 GT:DP:GQ:MIN_DP:PL 0/0:33:84:31:0,84,1260 +20 10083802 . C . . END=10083807 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1025 +20 10083808 . T . . END=10083808 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,944 +20 10083809 . T . . END=10083812 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10083813 . A . . END=10083823 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1056 +20 10083824 . A . . END=10083824 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1075 +20 10083825 . G . . END=10083849 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1128 +20 10083850 . A . . END=10083851 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20 10083852 . C . . END=10084120 GT:DP:GQ:MIN_DP:PL 0/0:51:99:36:0,99,1185 +20 10084121 . C T, 1457.77 . BaseQRankSum=-1.401;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=169200,47;ReadPosRankSum=-0.429 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:99:1486,107,0,1489,138,1521:0,1,17,29 +20 10084122 . T . . END=10084188 GT:DP:GQ:MIN_DP:PL 0/0:50:99:40:0,108,1299 +20 10084189 . C . . END=10084189 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1186 +20 10084190 . A . . END=10084209 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1069 +20 10084210 . T . . END=10084210 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1174 +20 10084211 . T . . END=10084238 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,102,1178 +20 10084239 . G . . END=10084239 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1046 +20 10084240 . T . . END=10084255 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,100,1099 +20 10084256 . A . . END=10084256 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1258 +20 10084257 . T . . END=10084268 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,111,1332 +20 10084269 . T . . END=10084269 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1303 +20 10084270 . T . . END=10084457 GT:DP:GQ:MIN_DP:PL 0/0:49:99:41:0,102,1277 +20 10084458 . G . . END=10084458 GT:DP:GQ:MIN_DP:PL 0/0:53:97:53:0,97,1503 +20 10084459 . T . . END=10084574 GT:DP:GQ:MIN_DP:PL 0/0:50:99:38:0,99,1175 +20 10084575 . T . . END=10084575 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1201 +20 10084576 . T . . END=10084599 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,103,1215 +20 10084600 . A . . END=10084600 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1312 +20 10084601 . G . . END=10084625 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1153 +20 10084626 . T . . END=10084626 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1124 +20 10084627 . A . . END=10084631 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1044 +20 10084632 . T . . END=10084632 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1023 +20 10084633 . T . . END=10084633 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1091 +20 10084634 . G . . END=10084634 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1096 +20 10084635 . A . . END=10084637 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,107,1043 +20 10084638 . T . . END=10084638 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1055 +20 10084639 . A . . END=10084639 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1213 +20 10084640 . G . . END=10084651 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,109,1178 +20 10084652 . C . . END=10084652 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1078 +20 10084653 . T . . END=10084672 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,104,1153 +20 10084673 . C . . END=10084673 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1042 +20 10084674 . T . . END=10084760 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,105,1159 +20 10084761 . T . . END=10084761 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1170 +20 10084762 . G . . END=10084780 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,103,1193 +20 10084781 . A . . END=10084781 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1172 +20 10084782 . C . . END=10084818 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1169 +20 10084819 . C . . END=10084827 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20 10084828 . A . . END=10084828 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10084829 . C . . END=10084833 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10084834 . C . . END=10084838 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,1011 +20 10084839 . T . . END=10084840 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +20 10084841 . T . . END=10084848 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10084849 . A . . END=10084849 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,878 +20 10084850 . A . . END=10084850 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10084851 . A . . END=10084851 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10084852 . T . . END=10084853 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,984 +20 10084854 . T . . END=10084863 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10084864 . A . . END=10084871 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,980 +20 10084872 . A . . END=10084872 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1009 +20 10084873 . A . . END=10084873 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10084874 . C . . END=10084874 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10084875 . A . . END=10084883 GT:DP:GQ:MIN_DP:PL 0/0:31:82:30:0,82,1011 +20 10084884 . T . . END=10084896 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,874 +20 10084897 . A . . END=10084897 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1003 +20 10084898 . C . . END=10084902 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10084903 . C . . END=10084905 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10084906 . C . . END=10084915 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10084916 . G . . END=10084921 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10084922 . A . . END=10084922 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1146 +20 10084923 . G . . END=10085053 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,99,1192 +20 10085054 . A G, 1207.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1236,123,0,1236,123,1236:0,0,22,19 +20 10085055 . A . . END=10085162 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,105,1230 +20 10085163 . G . . END=10085163 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1221 +20 10085164 . A . . END=10085205 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,99,1207 +20 10085206 . C . . END=10085215 GT:DP:GQ:MIN_DP:PL 0/0:39:90:38:0,90,1350 +20 10085216 . A . . END=10085216 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1149 +20 10085217 . T . . END=10085221 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1440 +20 10085222 . G . . END=10085228 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10085229 . T . . END=10085229 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10085230 . T . . END=10085246 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1041 +20 10085247 . T . . END=10085247 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1164 +20 10085248 . T . . END=10085319 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,104,1188 +20 10085320 . C T, 1240.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=147600,41 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1269,120,0,1269,120,1269:0,0,22,18 +20 10085321 . A . . END=10085401 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1185 +20 10085402 . T . . END=10085402 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1103 +20 10085403 . G . . END=10085422 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1158 +20 10085423 . T . . END=10085428 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10085429 . A . . END=10085431 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10085432 . A . . END=10085432 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10085433 . T . . END=10085433 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1073 +20 10085434 . C . . END=10085434 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10085435 . T . . END=10085494 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1184 +20 10085495 . C . . END=10085495 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1266 +20 10085496 . A . . END=10085496 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,100,1366 +20 10085497 . G . . END=10085497 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1288 +20 10085498 . G . . END=10085499 GT:DP:GQ:MIN_DP:PL 0/0:42:84:41:0,84,1223 +20 10085500 . A . . END=10085500 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1287 +20 10085501 . C . . END=10085502 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,116,1143 +20 10085503 . T . . END=10085503 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1202 +20 10085504 . A . . END=10085506 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,107,1191 +20 10085507 . G . . END=10085507 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1251 +20 10085508 . A . . END=10085510 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,112,1230 +20 10085511 . G . . END=10085511 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1211 +20 10085512 . G . . END=10085514 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10085515 . G . . END=10085515 GT:DP:GQ:MIN_DP:PL 0/0:38:77:38:0,77,1122 +20 10085516 . T . . END=10085516 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1153 +20 10085517 . T . . END=10085517 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +20 10085518 . G . . END=10085519 GT:DP:GQ:MIN_DP:PL 0/0:41:90:40:0,90,1171 +20 10085520 . C . . END=10085859 GT:DP:GQ:MIN_DP:PL 0/0:49:99:37:0,99,1160 +20 10085860 . A . . END=10085860 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1155 +20 10085861 . T . . END=10085871 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10085872 . C . . END=10085872 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1155 +20 10085873 . A . . END=10085879 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1129 +20 10085880 . T . . END=10085884 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10085885 . T . . END=10085895 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1064 +20 10085896 . A . . END=10085905 GT:DP:GQ:MIN_DP:PL 0/0:35:92:34:0,92,1075 +20 10085906 . G . . END=10085906 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10085907 . C . . END=10085907 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1053 +20 10085908 . C . . END=10085917 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1075 +20 10085918 . A . . END=10085921 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10085922 . T . . END=10085923 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10085924 . A . . END=10085924 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10085925 . A . . END=10085925 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1104 +20 10085926 . A . . END=10085955 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10085956 . T . . END=10085956 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1094 +20 10085957 . A . . END=10085957 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10085958 . G . . END=10085958 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1066 +20 10085959 . G . . END=10085960 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10085961 . G . . END=10085961 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1095 +20 10085962 . G . . END=10086002 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,108,1119 +20 10086003 . T . . END=10086003 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1167 +20 10086004 . C . . END=10086063 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1155 +20 10086064 . A . . END=10086064 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1152 +20 10086065 . C . . END=10086068 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1183 +20 10086069 . A . . END=10086070 GT:DP:GQ:MIN_DP:PL 0/0:40:96:39:0,96,1440 +20 10086071 . A . . END=10086071 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10086072 . A . . END=10086074 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10086075 . G . . END=10086075 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10086076 . A . . END=10086080 GT:DP:GQ:MIN_DP:PL 0/0:37:96:35:0,96,1440 +20 10086081 . T . . END=10086082 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10086083 . C . . END=10086083 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,1007 +20 10086084 . T . . END=10086084 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1076 +20 10086085 . T . . END=10086085 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10086086 . A . . END=10086086 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1049 +20 10086087 . A . . END=10086087 GT:DP:GQ:MIN_DP:PL 0/0:36:64:36:0,64,1029 +20 10086088 . A . . END=10086091 GT:DP:GQ:MIN_DP:PL 0/0:36:72:35:0,72,1005 +20 10086092 . T . . END=10086092 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10086093 . G . . END=10086093 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1008 +20 10086094 . A . . END=10086094 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,992 +20 10086095 . A . . END=10086101 GT:DP:GQ:MIN_DP:PL 0/0:36:72:35:0,72,971 +20 10086102 . T . . END=10086102 GT:DP:GQ:MIN_DP:PL 0/0:35:53:35:0,53,923 +20 10086103 . A . . END=10086103 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,984 +20 10086104 . A . . END=10086105 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1215 +20 10086106 . T . . END=10086106 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,997 +20 10086107 . T . . END=10086107 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,1016 +20 10086108 . A . . END=10086109 GT:DP:GQ:MIN_DP:PL 0/0:33:60:31:0,60,925 +20 10086110 . G A, 839.77 . DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=97200,27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:81:868,81,0,868,81,868:0,0,14,13 +20 10086111 . C . . END=10086114 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,899 +20 10086115 . A . . END=10086117 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20 10086118 . A . . END=10086120 GT:DP:GQ:MIN_DP:PL 0/0:33:63:31:0,63,924 +20 10086121 . G . . END=10086121 GT:DP:GQ:MIN_DP:PL 0/0:31:27:31:0,27,784 +20 10086122 . A . . END=10086123 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10086124 . A . . END=10086124 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,873 +20 10086125 . A . . END=10086132 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20 10086133 . G . . END=10086141 GT:DP:GQ:MIN_DP:PL 0/0:29:76:28:0,76,879 +20 10086142 . G . . END=10086142 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10086143 . A . . END=10086143 GT:DP:GQ:MIN_DP:PL 0/0:28:73:28:0,73,837 +20 10086144 . G . . END=10086144 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,791 +20 10086145 . G . . END=10086145 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20 10086146 . C . . END=10086147 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10086148 . A . . END=10086149 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10086150 . G . . END=10086150 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,937 +20 10086151 . A . . END=10086154 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10086155 . C . . END=10086155 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,991 +20 10086156 . A . . END=10086160 GT:DP:GQ:MIN_DP:PL 0/0:35:91:33:0,91,1054 +20 10086161 . A . . END=10086162 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10086163 . A . . END=10086170 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10086171 . A . . END=10086171 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,926 +20 10086172 . A . . END=10086172 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,901 +20 10086173 . T . . END=10086173 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,946 +20 10086174 . C . . END=10086177 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,899 +20 10086178 . A . . END=10086181 GT:DP:GQ:MIN_DP:PL 0/0:30:85:30:0,85,929 +20 10086182 . G . . END=10086190 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,884 +20 10086191 . T . . END=10086191 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,968 +20 10086192 . A . . END=10086192 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,974 +20 10086193 . G . . END=10086196 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10086197 . C . . END=10086197 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,915 +20 10086198 . T . . END=10086201 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10086202 . T . . END=10086202 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,991 +20 10086203 . T . . END=10086204 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1027 +20 10086205 . A . . END=10086205 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1001 +20 10086206 . C . . END=10086207 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1010 +20 10086208 . A . . END=10086208 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1036 +20 10086209 . T . . END=10086210 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10086211 . A . . END=10086211 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1048 +20 10086212 . T . . END=10086232 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,102,1043 +20 10086233 . G . . END=10086233 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1083 +20 10086234 . C . . END=10086260 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1084 +20 10086261 . T . . END=10086261 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1105 +20 10086262 . T . . END=10086269 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,998 +20 10086270 . C . . END=10086270 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,893 +20 10086271 . A . . END=10086282 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1102 +20 10086283 . G T, 1067.77 . BaseQRankSum=1.794;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=140400,39;ReadPosRankSum=1.551 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:99:1096,104,0,1098,111,1105:1,0,20,17 +20 10086284 . G . . END=10086293 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1082 +20 10086294 . G . . END=10086294 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1125 +20 10086295 . A . . END=10086295 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10086296 . G . . END=10086296 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1106 +20 10086297 . A . . END=10086303 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10086304 . A . . END=10086306 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10086307 . A . . END=10086307 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10086308 . T . . END=10086309 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10086310 . C . . END=10086310 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,954 +20 10086311 . A . . END=10086317 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10086318 . T . . END=10086323 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1026 +20 10086324 . A . . END=10086324 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1103 +20 10086325 . A . . END=10086337 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1235 +20 10086338 . T . . END=10086338 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1225 +20 10086339 . T . . END=10086369 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,108,1268 +20 10086370 . G . . END=10086370 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1176 +20 10086371 . G . . END=10086846 GT:DP:GQ:MIN_DP:PL 0/0:48:99:36:0,99,1127 +20 10086847 . G T, 0 . BaseQRankSum=-2.161;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=129600,36;ReadPosRankSum=0.993 GT:AD:DP:GQ:PGT:PID:PL:SB 0/0:33,2,0:35:84:0|1:10086847_G_T:0,84,922,98,927,941:16,17,2,0 +20 10086848 . T . . END=10086848 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10086849 . G . . END=10086849 GT:DP:GQ:MIN_DP:PL 0/0:36:60:36:0,60,975 +20 10086850 . A . . END=10086852 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20 10086853 . G A, 1023.77 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=118800,33 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,33,0:33:99:0|1:10086847_G_T:1052,99,0,1052,99,1052:0,0,17,16 +20 10086854 . T . . END=10086857 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1010 +20 10086858 . T . . END=10086864 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10086865 . A . . END=10086865 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,988 +20 10086866 . A . . END=10086884 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1032 +20 10086885 . T . . END=10086885 GT:DP:GQ:MIN_DP:PL 0/0:40:82:40:0,82,1109 +20 10086886 . T . . END=10086886 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10086887 . C . . END=10086887 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1028 +20 10086888 . G . . END=10086925 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,104,1121 +20 10086926 . A . . END=10086926 GT:DP:GQ:MIN_DP:PL 0/0:38:77:38:0,77,978 +20 10086927 . C . . END=10086931 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20 10086932 . C . . END=10086932 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1055 +20 10086933 . A . . END=10086933 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10086934 . T . . END=10086945 GT:DP:GQ:MIN_DP:PL 0/0:37:93:33:0,93,976 +20 10086946 . G . . END=10086946 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1025 +20 10086947 . G . . END=10086950 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,909 +20 10086951 . T . . END=10086951 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10086952 . G . . END=10086952 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,991 +20 10086953 . C . . END=10086953 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10086954 . G A, 890.77 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=118800,33 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:92:919,92,0,919,92,919:0,0,10,21 +20 10086955 . C . . END=10086956 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10086957 . G . . END=10086957 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1044 +20 10086958 . G . . END=10086989 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,102,1144 +20 10086990 . A . . END=10086991 GT:DP:GQ:MIN_DP:PL 0/0:38:85:37:0,85,1057 +20 10086992 . T . . END=10086992 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10086993 . C . . END=10086993 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1148 +20 10086994 . T . . END=10086999 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10087000 . C . . END=10087011 GT:DP:GQ:MIN_DP:PL 0/0:35:90:31:0,90,1350 +20 10087012 . A . . END=10087016 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10087017 . T . . END=10087017 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10087018 . G . . END=10087021 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10087022 . G . . END=10087022 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,910 +20 10087023 . T . . END=10087039 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10087040 . T . . END=10087053 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,932 +20 10087054 . T . . END=10087054 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,936 +20 10087055 . C . . END=10087055 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,944 +20 10087056 . A . . END=10087063 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,970 +20 10087064 . C . . END=10087064 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1062 +20 10087065 . T . . END=10087066 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10087067 . T . . END=10087067 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,978 +20 10087068 . C . . END=10087068 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10087069 . A . . END=10087069 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,945 +20 10087070 . A . . END=10087077 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1014 +20 10087078 . A . . END=10087078 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10087079 . A . . END=10087079 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1035 +20 10087080 . C . . END=10087080 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,967 +20 10087081 . A . . END=10087092 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10087093 . A . . END=10087094 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20 10087095 . C . . END=10087106 GT:DP:GQ:MIN_DP:PL 0/0:32:75:30:0,75,895 +20 10087107 . G . . END=10087107 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,880 +20 10087108 . A . . END=10087110 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,1080 +20 10087111 . C . . END=10087111 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20 10087112 . C . . END=10087119 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,838 +20 10087120 . C . . END=10087120 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,760 +20 10087121 . T . . END=10087121 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20 10087122 . A . . END=10087122 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,748 +20 10087123 . T . . END=10087131 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,737 +20 10087132 . T . . END=10087135 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,848 +20 10087136 . C . . END=10087136 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,865 +20 10087137 . T . . END=10087138 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20 10087139 . C . . END=10087140 GT:DP:GQ:MIN_DP:PL 0/0:29:62:28:0,62,852 +20 10087141 . T . . END=10087142 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10087143 . C . . END=10087143 GT:DP:GQ:MIN_DP:PL 0/0:29:61:29:0,61,879 +20 10087144 . A . . END=10087155 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,846 +20 10087156 . A . . END=10087156 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,933 +20 10087157 . G . . END=10087157 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,964 +20 10087158 . T . . END=10087164 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20 10087165 . G . . END=10087168 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10087169 . A . . END=10087173 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10087174 . A . . END=10087175 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10087176 . C . . END=10087179 GT:DP:GQ:MIN_DP:PL 0/0:34:83:31:0,83,1014 +20 10087180 . C . . END=10087186 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,940 +20 10087187 . A . . END=10087194 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,921 +20 10087195 . G . . END=10087196 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10087197 . A . . END=10087201 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,968 +20 10087202 . T . . END=10087210 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10087211 . T . . END=10087211 GT:DP:GQ:MIN_DP:PL 0/0:32:70:32:0,70,999 +20 10087212 . T . . END=10087216 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10087217 . A . . END=10087217 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10087218 . C . . END=10087219 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1002 +20 10087220 . G . . END=10087220 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1057 +20 10087221 . C . . END=10087222 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1128 +20 10087223 . G . . END=10087223 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1080 +20 10087224 . T . . END=10087225 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10087226 . C . . END=10087226 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1133 +20 10087227 . T . . END=10087229 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10087230 . A G, 928.77 . BaseQRankSum=-1.427;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=122400,34;ReadPosRankSum=-0.657 GT:AD:DP:GQ:PL:SB 1/1:1,33,0:34:66:957,66,0,960,97,992:1,0,17,16 +20 10087231 . C . . END=10087438 GT:DP:GQ:MIN_DP:PL 0/0:46:99:38:0,99,1150 +20 10087439 . C . . END=10087439 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1266 +20 10087440 . T . . END=10087450 GT:DP:GQ:MIN_DP:PL 0/0:47:99:44:0,106,1300 +20 10087451 . A . . END=10087451 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1335 +20 10087452 . A . . END=10087572 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,101,1289 +20 10087573 . C . . END=10087573 GT:DP:GQ:MIN_DP:PL 0/0:47:91:47:0,91,1238 +20 10087574 . G . . END=10087627 GT:DP:GQ:MIN_DP:PL 0/0:46:99:40:0,111,1665 +20 10087628 . C . . END=10087628 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1220 +20 10087629 . C . . END=10087662 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1187 +20 10087663 . A . . END=10087663 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1129 +20 10087664 . A . . END=10087664 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10087665 . T . . END=10087665 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1143 +20 10087666 . G . . END=10087673 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,968 +20 10087674 . A . . END=10087674 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1049 +20 10087675 . C . . END=10087679 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10087680 . A . . END=10087683 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1215 +20 10087684 . C . . END=10087684 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,1032 +20 10087685 . A . . END=10087689 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 +20 10087690 . A . . END=10087690 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1007 +20 10087691 . T . . END=10087691 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10087692 . T . . END=10087701 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,761 +20 10087702 . T . . END=10087709 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10087710 . C . . END=10087712 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10087713 . A . . END=10087714 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10087715 . A . . END=10087715 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,964 +20 10087716 . T . . END=10087725 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10087726 . T . . END=10087726 GT:DP:GQ:MIN_DP:PL 0/0:30:71:30:0,71,869 +20 10087727 . T . . END=10087731 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10087732 . A . . END=10087732 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +20 10087733 . C . . END=10087733 GT:DP:GQ:MIN_DP:PL 0/0:29:49:29:0,49,772 +20 10087734 . T . . END=10087742 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20 10087743 . T . . END=10087743 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,763 +20 10087744 . T . . END=10087744 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20 10087745 . G . . END=10087750 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,822 +20 10087751 . T . . END=10087751 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,872 +20 10087752 . G . . END=10087753 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,856 +20 10087754 . T . . END=10087757 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10087758 . A . . END=10087758 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10087759 . G . . END=10087759 GT:DP:GQ:MIN_DP:PL 0/0:34:56:34:0,56,951 +20 10087760 . A . . END=10087760 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10087761 . A . . END=10087762 GT:DP:GQ:MIN_DP:PL 0/0:37:76:36:0,76,988 +20 10087763 . A . . END=10087764 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10087765 . A . . END=10087765 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10087766 . T . . END=10087766 GT:DP:GQ:MIN_DP:PL 0/0:37:67:37:0,67,982 +20 10087767 . T . . END=10087767 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20 10087768 . A . . END=10087768 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10087769 . A . . END=10087776 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 +20 10087777 . T . . END=10087781 GT:DP:GQ:MIN_DP:PL 0/0:38:81:36:0,81,1114 +20 10087782 . A . . END=10087783 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1080 +20 10087784 . G . . END=10087791 GT:DP:GQ:MIN_DP:PL 0/0:39:60:36:0,60,900 +20 10087792 . G . . END=10087792 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,855 +20 10087793 . A . . END=10087793 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,810 +20 10087794 . C . . END=10087797 GT:DP:GQ:MIN_DP:PL 0/0:38:51:37:0,51,765 +20 10087798 . A . . END=10087799 GT:DP:GQ:MIN_DP:PL 0/0:37:48:37:0,48,720 +20 10087800 . A . . END=10087800 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,630 +20 10087801 . T . . END=10087801 GT:DP:GQ:MIN_DP:PL 0/0:37:39:37:0,39,585 +20 10087802 . G . . END=10087803 GT:DP:GQ:MIN_DP:PL 0/0:36:36:35:0,36,540 +20 10087804 . C T, 853.77 . DP=32;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=121700,32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:94:882,94,0,882,94,882:0,0,23,9 +20 10087805 . G . . END=10087805 GT:DP:GQ:MIN_DP:PL 0/0:36:33:36:0,33,495 +20 10087806 . G . . END=10087810 GT:DP:GQ:MIN_DP:PL 0/0:36:24:36:0,24,360 +20 10087811 . A . . END=10087814 GT:DP:GQ:MIN_DP:PL 0/0:36:12:36:0,12,180 +20 10087815 . A . . END=10087819 GT:DP:GQ:MIN_DP:PL 0/0:37:3:37:0,3,45 +20 10087820 . C CAGAG, 1390.73 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=130200,34 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1428,96,0,1428,96,1428:0,0,21,11 +20 10087821 . A . . END=10087821 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,0 +20 10087822 . G . . END=10087823 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,995 +20 10087824 . G . . END=10087824 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10087825 . A . . END=10087826 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1027 +20 10087827 . A . . END=10087832 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10087833 . A . . END=10087834 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10087835 . A . . END=10087836 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1046 +20 10087837 . A . . END=10087840 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10087841 . A . . END=10087841 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10087842 . A . . END=10087842 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1055 +20 10087843 . A . . END=10087846 GT:DP:GQ:MIN_DP:PL 0/0:37:87:36:0,87,1305 +20 10087847 . A . . END=10087860 GT:DP:GQ:MIN_DP:PL 0/0:38:90:34:0,90,1350 +20 10087861 . C . . END=10087865 GT:DP:GQ:MIN_DP:PL 0/0:33:83:32:0,83,871 +20 10087866 . C . . END=10087869 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10087870 . A . . END=10087871 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10087872 . T . . END=10087872 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1036 +20 10087873 . A . . END=10087877 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,965 +20 10087878 . T . . END=10087879 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,860 +20 10087880 . C . . END=10087886 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,108,1620 +20 10087887 . C . . END=10087887 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1114 +20 10087888 . A . . END=10087888 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,106,1200 +20 10087889 . T . . END=10087889 GT:DP:GQ:MIN_DP:PL 0/0:39:60:39:0,60,932 +20 10087890 . A . . END=10087899 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,101,1079 +20 10087900 . T . . END=10087900 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1053 +20 10087901 . G . . END=10087909 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,103,1190 +20 10087910 . G . . END=10087910 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1045 +20 10087911 . A . . END=10087913 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1142 +20 10087914 . G . . END=10087914 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1096 +20 10087915 . C . . END=10087917 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,111,1665 +20 10087918 . C . . END=10087918 GT:DP:GQ:MIN_DP:PL 0/0:40:59:40:0,59,1086 +20 10087919 . A . . END=10087922 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1150 +20 10087923 . T . . END=10087923 GT:DP:GQ:MIN_DP:PL 0/0:39:63:39:0,63,1069 +20 10087924 . A . . END=10087924 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1133 +20 10087925 . A . . END=10087940 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,103,1118 +20 10087941 . T . . END=10087941 GT:DP:GQ:MIN_DP:PL 0/0:46:84:46:0,84,1209 +20 10087942 . T . . END=10088062 GT:DP:GQ:MIN_DP:PL 0/0:51:99:46:0,120,1800 +20 10088063 . C T, 1278.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=169200,47 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1307,125,0,1307,125,1307:0,0,16,26 +20 10088064 . G . . END=10088077 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,111,1444 +20 10088078 . A . . END=10088078 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1353 +20 10088079 . C . . END=10088116 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1085 +20 10088117 . T . . END=10088117 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1094 +20 10088118 . A . . END=10088309 GT:DP:GQ:MIN_DP:PL 0/0:46:99:38:0,102,1194 +20 10088310 . T . . END=10088310 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1224 +20 10088311 . A . . END=10088337 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1056 +20 10088338 . G . . END=10088338 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1102 +20 10088339 . A . . END=10088358 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1019 +20 10088359 . T . . END=10088359 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1093 +20 10088360 . A . . END=10088381 GT:DP:GQ:MIN_DP:PL 0/0:41:99:35:0,99,1092 +20 10088382 . A . . END=10088396 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1061 +20 10088397 . A . . END=10088402 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1012 +20 10088403 . T . . END=10088403 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,1001 +20 10088404 . A . . END=10088406 GT:DP:GQ:MIN_DP:PL 0/0:33:81:31:0,81,1215 +20 10088407 . T . . END=10088407 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,950 +20 10088408 . C . . END=10088410 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10088411 . A . . END=10088411 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,934 +20 10088412 . A . . END=10088417 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,862 +20 10088418 . C . . END=10088418 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,865 +20 10088419 . A . . END=10088423 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,909 +20 10088424 . T . . END=10088424 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,886 +20 10088425 . C . . END=10088427 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10088428 . A . . END=10088428 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,968 +20 10088429 . A . . END=10088431 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10088432 . A . . END=10088434 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10088435 . G . . END=10088435 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,772 +20 10088436 . T . . END=10088444 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10088445 . C . . END=10088445 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,860 +20 10088446 . A . . END=10088450 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,942 +20 10088451 . A . . END=10088458 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,946 +20 10088459 . G . . END=10088459 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,962 +20 10088460 . A . . END=10088464 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10088465 . G . . END=10088465 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10088466 . A . . END=10088469 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10088470 . T . . END=10088470 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,1007 +20 10088471 . C . . END=10088472 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10088473 . G . . END=10088473 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1036 +20 10088474 . G . . END=10088479 GT:DP:GQ:MIN_DP:PL 0/0:34:93:31:0,93,1008 +20 10088480 . T . . END=10088481 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10088482 . T . . END=10088482 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10088483 . T . . END=10088483 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,940 +20 10088484 . T . . END=10088485 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1075 +20 10088486 . A . . END=10088486 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10088487 . A . . END=10088491 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10088492 . C . . END=10088492 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,952 +20 10088493 . A . . END=10088497 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20 10088498 . T . . END=10088502 GT:DP:GQ:MIN_DP:PL 0/0:31:82:30:0,82,930 +20 10088503 . A . . END=10088504 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,992 +20 10088505 . T . . END=10088507 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10088508 . A . . END=10088508 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1052 +20 10088509 . T . . END=10088511 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20 10088512 . T . . END=10088512 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1054 +20 10088513 . A . . END=10088517 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10088518 . C . . END=10088518 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,966 +20 10088519 . A . . END=10088533 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,955 +20 10088534 . G . . END=10088535 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10088536 . C . . END=10088536 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,980 +20 10088537 . C . . END=10088541 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1061 +20 10088542 . A . . END=10088542 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1032 +20 10088543 . G . . END=10088543 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,980 +20 10088544 . G . . END=10088544 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,938 +20 10088545 . T . . END=10088546 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10088547 . G . . END=10088549 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20 10088550 . A . . END=10088598 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1157 +20 10088599 . G . . END=10088599 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1113 +20 10088600 . C . . END=10088601 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,120,1800 +20 10088602 . G . . END=10088602 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1135 +20 10088603 . A . . END=10088605 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,120,1800 +20 10088606 . T . . END=10088606 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1165 +20 10088607 . G . . END=10088647 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,99,1120 +20 10088648 . G . . END=10088648 GT:DP:GQ:MIN_DP:PL 0/0:44:82:44:0,82,1206 +20 10088649 . C . . END=10088698 GT:DP:GQ:MIN_DP:PL 0/0:51:99:45:0,117,1316 +20 10088699 . C T, 1376.77 . DP=50;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=178704,50 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1405,135,0,1405,135,1405:0,0,24,21 +20 10088700 . G . . END=10088718 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,99,1303 +20 10088719 . C . . END=10088719 GT:DP:GQ:MIN_DP:PL 0/0:44:78:44:0,78,1193 +20 10088720 . C . . END=10088729 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,100,1277 +20 10088730 . G A, 1796.77 . DP=42;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=149904,42 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,41,0:41:99:0|1:10088730_G_A:1825,123,0,1825,123,1825:0,0,23,18 +20 10088731 . G . . END=10088735 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,108,1292 +20 10088736 . A C, 1970.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=157104,44 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,43,0:43:99:0|1:10088730_G_A:1999,138,0,1999,138,1999:0,0,23,20 +20 10088737 . C . . END=10088746 GT:DP:GQ:MIN_DP:PL 0/0:46:99:45:0,120,1800 +20 10088747 . A G, 2009.77 . DP=48;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=171504,48 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,47,0:47:99:0|1:10088730_G_A:2038,144,0,2038,144,2038:0,0,25,22 +20 10088748 . G . . END=10088780 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,112,1329 +20 10088781 . C . . END=10088781 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1212 +20 10088782 . T . . END=10088797 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1485 +20 10088798 . C . . END=10088798 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10088799 . G A, 1291.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=146304,41 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1320,120,0,1320,120,1320:0,0,20,20 +20 10088800 . T . . END=10088802 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1395 +20 10088803 . C . . END=10088803 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +20 10088804 . T . . END=10088804 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10088805 . A . . END=10088807 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20 10088808 . A . . END=10088808 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10088809 . A . . END=10088812 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10088813 . T . . END=10088815 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10088816 . A . . END=10088819 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20 10088820 . A . . END=10088820 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10088821 . A . . END=10088855 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1043 +20 10088856 . A . . END=10088860 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10088861 . C . . END=10088861 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,991 +20 10088862 . T . . END=10088862 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,991 +20 10088863 . C . . END=10088863 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10088864 . G . . END=10088875 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,990 +20 10088876 . C . . END=10088883 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1053 +20 10088884 . T . . END=10088884 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,983 +20 10088885 . G . . END=10088887 GT:DP:GQ:MIN_DP:PL 0/0:34:81:31:0,81,886 +20 10088888 . G . . END=10088889 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10088890 . G . . END=10088890 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10088891 . A . . END=10088891 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10088892 . A . . END=10088892 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10088893 . C . . END=10088893 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10088894 . C . . END=10088894 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10088895 . C T, 903.77 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=116721,33 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:92:932,92,0,932,92,932:0,0,18,13 +20 10088896 . G . . END=10088903 GT:DP:GQ:MIN_DP:PL 0/0:33:80:29:0,80,790 +20 10088904 . G . . END=10088905 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10088906 . G . . END=10088910 GT:DP:GQ:MIN_DP:PL 0/0:30:84:28:0,84,866 +20 10088911 . C . . END=10088911 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,858 +20 10088912 . A . . END=10088916 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +20 10088917 . G . . END=10088928 GT:DP:GQ:MIN_DP:PL 0/0:34:72:32:0,72,1080 +20 10088929 . C . . END=10088937 GT:DP:GQ:MIN_DP:PL 0/0:39:66:35:0,66,990 +20 10088938 . T . . END=10088938 GT:DP:GQ:MIN_DP:PL 0/0:39:57:39:0,57,1004 +20 10088939 . C . . END=10088940 GT:DP:GQ:MIN_DP:PL 0/0:40:60:40:0,60,900 +20 10088941 . A . . END=10088941 GT:DP:GQ:MIN_DP:PL 0/0:39:57:39:0,57,855 +20 10088942 . G . . END=10088942 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,810 +20 10088943 . C . . END=10088943 GT:DP:GQ:MIN_DP:PL 0/0:39:51:39:0,51,765 +20 10088944 . C . . END=10088947 GT:DP:GQ:MIN_DP:PL 0/0:40:48:38:0,48,720 +20 10088948 . A . . END=10088948 GT:DP:GQ:MIN_DP:PL 0/0:42:39:42:0,39,585 +20 10088949 . T . . END=10088952 GT:DP:GQ:MIN_DP:PL 0/0:40:36:39:0,36,540 +20 10088953 . T . . END=10088956 GT:DP:GQ:MIN_DP:PL 0/0:43:39:42:0,39,585 +20 10088957 . C . . END=10088959 GT:DP:GQ:MIN_DP:PL 0/0:40:33:39:0,33,495 +20 10088960 . G . . END=10088960 GT:DP:GQ:MIN_DP:PL 0/0:39:30:39:0,30,450 +20 10088961 . A . . END=10088963 GT:DP:GQ:MIN_DP:PL 0/0:40:27:38:0,27,405 +20 10088964 . G . . END=10088964 GT:DP:GQ:MIN_DP:PL 0/0:37:30:37:0,30,450 +20 10088965 . T . . END=10088965 GT:DP:GQ:MIN_DP:PL 0/0:41:27:41:0,27,405 +20 10088966 . C . . END=10088967 GT:DP:GQ:MIN_DP:PL 0/0:42:0:41:0,0,683 +20 10088968 . C CAAA, 1743.73 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=114642,33 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,30,0:30:99:0|1:10088968_C_CAAA:1781,128,0,1781,128,1781:0,0,18,12 +20 10088969 . A . . END=10088969 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +20 10088970 . A . . END=10088979 GT:DP:GQ:MIN_DP:PL 0/0:54:99:53:0,120,1800 +20 10088980 . T C, 1830.77 . DP=45;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=155842,45 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,44,0:44:99:0|1:10088968_C_CAAA:1859,135,0,1859,135,1859:0,0,18,26 +20 10088981 . A . . END=10088982 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +20 10088983 . A . . END=10088983 GT:DP:GQ:MIN_DP:PL 0/0:51:43:51:0,43,1358 +20 10088984 . A . . END=10088984 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +20 10088985 . T C, 1897.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154321,44 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1926,132,0,1926,132,1926:0,0,18,25 +20 10088986 . A . . END=10089029 GT:DP:GQ:MIN_DP:PL 0/0:52:99:49:0,110,1473 +20 10089030 . T . . END=10089030 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1483 +20 10089031 . A . . END=10089074 GT:DP:GQ:MIN_DP:PL 0/0:50:99:46:0,103,1428 +20 10089075 . T . . END=10089075 GT:DP:GQ:MIN_DP:PL 0/0:45:88:45:0,88,1279 +20 10089076 . C . . END=10089147 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,101,1310 +20 10089148 . T . . END=10089148 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1207 +20 10089149 . A G, 1108.77 . BaseQRankSum=1.752;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=144000,40;ReadPosRankSum=-0.474 GT:AD:DP:GQ:PL:SB 1/1:1,39,0:40:99:1137,108,0,1140,115,1147:0,1,24,15 +20 10089150 . A . . END=10089162 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,108,1146 +20 10089163 . T . . END=10089163 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1173 +20 10089164 . A . . END=10089180 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,120,1800 +20 10089181 . G . . END=10089181 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1273 +20 10089182 . A . . END=10089524 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,102,1104 +20 10089525 . C T, 1323.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=154800,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1352,128,0,1352,128,1352:0,0,18,25 +20 10089526 . G . . END=10089650 GT:DP:GQ:MIN_DP:PL 0/0:49:99:46:0,103,1431 +20 10089651 . A . . END=10089651 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1299 +20 10089652 . A . . END=10089694 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1155 +20 10089695 . A . . END=10089695 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1247 +20 10089696 . G . . END=10089703 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,110,1230 +20 10089704 . C . . END=10089704 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1197 +20 10089705 . T . . END=10089752 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1077 +20 10089753 . A . . END=10089753 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1168 +20 10089754 . C . . END=10089820 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,99,1068 +20 10089821 . C . . END=10089821 GT:DP:GQ:MIN_DP:PL 0/0:45:87:45:0,87,1261 +20 10089822 . C . . END=10089861 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,111,1258 +20 10089862 . T . . END=10089862 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1201 +20 10089863 . A . . END=10089881 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,105,1111 +20 10089882 . G . . END=10089883 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1100 +20 10089884 . T . . END=10089928 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1147 +20 10089929 . A . . END=10089929 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1123 +20 10089930 . T . . END=10089932 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1173 +20 10089933 . T . . END=10089933 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1104 +20 10089934 . G . . END=10089940 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1099 +20 10089941 . C . . END=10089941 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1057 +20 10089942 . A . . END=10089952 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10089953 . G . . END=10089953 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1095 +20 10089954 . A . . END=10089960 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10089961 . T . . END=10089961 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1045 +20 10089962 . A . . END=10089975 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10089976 . C . . END=10089976 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1033 +20 10089977 . C . . END=10089980 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1124 +20 10089981 . T . . END=10089981 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1107 +20 10089982 . G . . END=10089984 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1620 +20 10089985 . A . . END=10089985 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1281 +20 10089986 . G . . END=10089994 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,100,1213 +20 10089995 . T . . END=10089995 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1122 +20 10089996 . G . . END=10090025 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1276 +20 10090026 . T . . END=10090026 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1146 +20 10090027 . A . . END=10090044 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,105,1095 +20 10090045 . T . . END=10090045 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1105 +20 10090046 . A . . END=10090060 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,105,1145 +20 10090061 . T . . END=10090061 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1180 +20 10090062 . A . . END=10090243 GT:DP:GQ:MIN_DP:PL 0/0:54:99:38:0,101,1290 +20 10090244 . A . . END=10090246 GT:DP:GQ:MIN_DP:PL 0/0:48:93:47:0,93,1395 +20 10090247 . T . . END=10090256 GT:DP:GQ:MIN_DP:PL 0/0:46:81:40:0,81,1215 +20 10090257 . T . . END=10090259 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1080 +20 10090260 . A . . END=10090266 GT:DP:GQ:MIN_DP:PL 0/0:45:60:43:0,60,900 +20 10090267 . A . . END=10090268 GT:DP:GQ:MIN_DP:PL 0/0:43:57:42:0,57,855 +20 10090269 . A . . END=10090269 GT:DP:GQ:MIN_DP:PL 0/0:43:54:43:0,54,810 +20 10090270 . A . . END=10090270 GT:DP:GQ:MIN_DP:PL 0/0:43:51:43:0,51,765 +20 10090271 . G . . END=10090272 GT:DP:GQ:MIN_DP:PL 0/0:42:48:42:0,48,720 +20 10090273 . A . . END=10090273 GT:DP:GQ:MIN_DP:PL 0/0:42:45:42:0,45,675 +20 10090274 . A . . END=10090275 GT:DP:GQ:MIN_DP:PL 0/0:43:33:42:0,33,495 +20 10090276 . A . . END=10090279 GT:DP:GQ:MIN_DP:PL 0/0:43:30:41:0,30,450 +20 10090280 . T . . END=10090281 GT:DP:GQ:MIN_DP:PL 0/0:42:27:40:0,27,405 +20 10090282 . A . . END=10090283 GT:DP:GQ:MIN_DP:PL 0/0:43:24:42:0,24,360 +20 10090284 . A . . END=10090285 GT:DP:GQ:MIN_DP:PL 0/0:43:15:42:0,15,225 +20 10090286 . T . . END=10090286 GT:DP:GQ:MIN_DP:PL 0/0:39:12:39:0,12,180 +20 10090287 . G . . END=10090288 GT:DP:GQ:MIN_DP:PL 0/0:39:9:38:0,9,135 +20 10090289 . CAA C, 971.73 . BaseQRankSum=-1.586;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PL:SB 1/1:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090292 . A . . END=10090292 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,0 +20 10090293 . A . . END=10090297 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +20 10090298 . A . . END=10090298 GT:DP:GQ:MIN_DP:PL 0/0:42:86:42:0,86,1250 +20 10090299 . A . . END=10090303 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,105,1250 +20 10090304 . A . . END=10090304 GT:DP:GQ:MIN_DP:PL 0/0:43:86:43:0,86,1261 +20 10090305 . A . . END=10090305 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1291 +20 10090306 . G . . END=10090307 GT:DP:GQ:MIN_DP:PL 0/0:42:81:41:0,81,1190 +20 10090308 . A . . END=10090465 GT:DP:GQ:MIN_DP:PL 0/0:51:99:41:0,99,1273 +20 10090466 . T . . END=10090466 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1329 +20 10090467 . A . . END=10090467 GT:DP:GQ:MIN_DP:PL 0/0:43:86:43:0,86,1291 +20 10090468 . T . . END=10090468 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1349 +20 10090469 . T . . END=10090469 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1379 +20 10090470 . G . . END=10090471 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1230 +20 10090472 . C . . END=10090472 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +20 10090473 . T . . END=10090473 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1309 +20 10090474 . G . . END=10090475 GT:DP:GQ:MIN_DP:PL 0/0:41:86:40:0,86,1194 +20 10090476 . C . . END=10090477 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1148 +20 10090478 . A . . END=10090478 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1182 +20 10090479 . A . . END=10090479 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1155 +20 10090480 . C . . END=10090480 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +20 10090481 . T . . END=10090482 GT:DP:GQ:MIN_DP:PL 0/0:42:91:41:0,91,1237 +20 10090483 . T . . END=10090483 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1228 +20 10090484 . C . . END=10090484 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +20 10090485 . T . . END=10090485 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1247 +20 10090486 . G . . END=10090486 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1070 +20 10090487 . T . . END=10090487 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1145 +20 10090488 . C . . END=10090490 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10090491 . G . . END=10090492 GT:DP:GQ:MIN_DP:PL 0/0:36:70:35:0,70,965 +20 10090493 . G . . END=10090493 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1006 +20 10090494 . C . . END=10090494 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10090495 . A . . END=10090495 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,1080 +20 10090496 . T . . END=10090496 GT:DP:GQ:MIN_DP:PL 0/0:35:56:35:0,56,1025 +20 10090497 . A . . END=10090497 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1022 +20 10090498 . C . . END=10090500 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20 10090501 . T . . END=10090501 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1173 +20 10090502 . C . . END=10090502 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20 10090503 . T . . END=10090505 GT:DP:GQ:MIN_DP:PL 0/0:38:76:37:0,76,1119 +20 10090506 . G . . END=10090506 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1107 +20 10090507 . G . . END=10090507 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1071 +20 10090508 . T . . END=10090508 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1160 +20 10090509 . C . . END=10090510 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20 10090511 . A . . END=10090513 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1156 +20 10090514 . T . . END=10090514 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1175 +20 10090515 . C . . END=10090516 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1665 +20 10090517 . A . . END=10090524 GT:DP:GQ:MIN_DP:PL 0/0:39:80:38:0,80,1130 +20 10090525 . A . . END=10090525 GT:DP:GQ:MIN_DP:PL 0/0:42:55:42:0,55,1127 +20 10090526 . A . . END=10090526 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1263 +20 10090527 . T . . END=10090527 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1298 +20 10090528 . G . . END=10090528 GT:DP:GQ:MIN_DP:PL 0/0:42:77:42:0,77,1199 +20 10090529 . G . . END=10090529 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1248 +20 10090530 . C . . END=10090532 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,114,1710 +20 10090533 . A . . END=10090535 GT:DP:GQ:MIN_DP:PL 0/0:44:94:43:0,94,1291 +20 10090536 . T . . END=10090536 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1245 +20 10090537 . C . . END=10090539 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,100,1317 +20 10090540 . A . . END=10090541 GT:DP:GQ:MIN_DP:PL 0/0:42:91:41:0,91,1185 +20 10090542 . T . . END=10090542 GT:DP:GQ:MIN_DP:PL 0/0:44:86:44:0,86,1243 +20 10090543 . C . . END=10090547 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20 10090548 . G . . END=10090549 GT:DP:GQ:MIN_DP:PL 0/0:40:93:39:0,93,1135 +20 10090550 . A . . END=10090557 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1131 +20 10090558 . C . . END=10090558 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1099 +20 10090559 . C . . END=10090592 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,106,1142 +20 10090593 . A . . END=10090593 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1225 +20 10090594 . C . . END=10090763 GT:DP:GQ:MIN_DP:PL 0/0:51:99:38:0,100,1169 +20 10090764 . A G, 1158.77 . DP=46;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=165600,46 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1187,133,0,1187,133,1187:0,0,25,20 +20 10090765 . A . . END=10090885 GT:DP:GQ:MIN_DP:PL 0/0:52:99:45:0,116,1415 +20 10090886 . G A, 1438.77 . BaseQRankSum=1.026;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=201600,56;ReadPosRankSum=1.795 GT:AD:DP:GQ:PL:SB 1/1:5,51,0:56:48:1467,48,0,1481,152,1585:2,3,27,24 +20 10090887 . A . . END=10091219 GT:DP:GQ:MIN_DP:PL 0/0:53:99:44:0,113,1448 +20 10091220 . A G, 1206.77 . DP=45;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=162000,45 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1235,130,0,1235,130,1235:0,0,20,24 +20 10091221 . T . . END=10091324 GT:DP:GQ:MIN_DP:PL 0/0:47:99:43:0,101,1302 +20 10091325 . G . . END=10091325 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1252 +20 10091326 . G . . END=10091363 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1114 +20 10091364 . A . . END=10091364 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1215 +20 10091365 . G . . END=10091537 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,105,1111 +20 10091538 . T . . END=10091538 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1048 +20 10091539 . C . . END=10091564 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1173 +20 10091565 . T . . END=10091565 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1132 +20 10091566 . G . . END=10091585 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1620 +20 10091586 . C . . END=10091586 GT:DP:GQ:MIN_DP:PL 0/0:39:97:39:0,97,1147 +20 10091587 . A . . END=10091617 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1141 +20 10091618 . G . . END=10091618 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1159 +20 10091619 . C . . END=10091624 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1163 +20 10091625 . A . . END=10091625 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1183 +20 10091626 . T . . END=10091662 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1188 +20 10091663 . T . . END=10091663 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1111 +20 10091664 . G . . END=10091664 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +20 10091665 . T . . END=10091665 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1210 +20 10091666 . A . . END=10091744 GT:DP:GQ:MIN_DP:PL 0/0:41:99:35:0,105,1152 +20 10091745 . A . . END=10091745 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1053 +20 10091746 . G . . END=10091797 GT:DP:GQ:MIN_DP:PL 0/0:42:99:33:0,99,1031 +20 10091798 . G . . END=10091798 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1196 +20 10091799 . G . . END=10091799 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20 10091800 . C . . END=10091800 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1237 +20 10091801 . A . . END=10091820 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1180 +20 10091821 . A . . END=10091821 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1242 +20 10091822 . A . . END=10091835 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1485 +20 10091836 . C . . END=10091836 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1175 +20 10091837 . T . . END=10091838 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20 10091839 . A . . END=10091843 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1111 +20 10091844 . A . . END=10091861 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1028 +20 10091862 . T . . END=10091862 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1028 +20 10091863 . C . . END=10091868 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1138 +20 10091869 . A . . END=10091869 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1074 +20 10091870 . C . . END=10091907 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1221 +20 10091908 . A . . END=10091908 GT:DP:GQ:MIN_DP:PL 0/0:47:98:47:0,98,1355 +20 10091909 . T . . END=10091931 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,103,1263 +20 10091932 . A . . END=10091932 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1185 +20 10091933 . T . . END=10092027 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,114,1239 +20 10092028 . G . . END=10092028 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1239 +20 10092029 . C . . END=10092101 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,102,1213 +20 10092102 . A . . END=10092102 GT:DP:GQ:MIN_DP:PL 0/0:47:83:47:0,83,1345 +20 10092103 . G . . END=10092130 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,108,1288 +20 10092131 . C . . END=10092131 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1128 +20 10092132 . C . . END=10092160 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,100,1126 +20 10092161 . T . . END=10092161 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1165 +20 10092162 . G . . END=10092165 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1195 +20 10092166 . G . . END=10092166 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1151 +20 10092167 . T . . END=10092179 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,101,1084 +20 10092180 . T . . END=10092180 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1148 +20 10092181 . T . . END=10092194 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10092195 . T . . END=10092196 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10092197 . T . . END=10092197 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10092198 . A . . END=10092198 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1072 +20 10092199 . T . . END=10092199 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10092200 . A . . END=10092200 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1063 +20 10092201 . C . . END=10092202 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10092203 . C . . END=10092209 GT:DP:GQ:MIN_DP:PL 0/0:34:96:32:0,96,983 +20 10092210 . C . . END=10092210 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10092211 . C . . END=10092211 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10092212 . A . . END=10092216 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,103,1087 +20 10092217 . T . . END=10092217 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1143 +20 10092218 . T . . END=10092238 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1113 +20 10092239 . A . . END=10092241 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20 10092242 . C . . END=10092242 GT:DP:GQ:MIN_DP:PL 0/0:39:77:39:0,77,1093 +20 10092243 . T . . END=10092243 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10092244 . C . . END=10092247 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1157 +20 10092248 . A . . END=10092248 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1127 +20 10092249 . A . . END=10092260 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,103,1121 +20 10092261 . A . . END=10092261 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1166 +20 10092262 . A . . END=10092288 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1110 +20 10092289 . G . . END=10092289 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1263 +20 10092290 . T . . END=10092641 GT:DP:GQ:MIN_DP:PL 0/0:54:99:39:0,108,1239 +20 10092642 . T C, 1399.77 . DP=51;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=183600,51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1428,151,0,1428,151,1428:0,0,26,25 +20 10092643 . G . . END=10093049 GT:DP:GQ:MIN_DP:PL 0/0:57:99:40:0,108,1608 +20 10093050 . G . . END=10093050 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1217 +20 10093051 . C . . END=10093108 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1143 +20 10093109 . G . . END=10093109 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1099 +20 10093110 . C . . END=10093110 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10093111 . T . . END=10093123 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1075 +20 10093124 . C . . END=10093125 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10093126 . C . . END=10093126 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10093127 . A . . END=10093128 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10093129 . T . . END=10093132 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1079 +20 10093133 . T . . END=10093138 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10093139 . A . . END=10093144 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10093145 . A . . END=10093229 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,99,1099 +20 10093230 . T . . END=10093230 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1332 +20 10093231 . C . . END=10093530 GT:DP:GQ:MIN_DP:PL 0/0:49:99:41:0,102,1306 +20 10093531 . C . . END=10093535 GT:DP:GQ:MIN_DP:PL 0/0:42:90:40:0,90,1350 +20 10093536 . C . . END=10093538 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,1215 +20 10093539 . A . . END=10093542 GT:DP:GQ:MIN_DP:PL 0/0:40:72:39:0,72,1080 +20 10093543 . G . . END=10093543 GT:DP:GQ:MIN_DP:PL 0/0:41:66:41:0,66,990 +20 10093544 . G . . END=10093544 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,855 +20 10093545 . T . . END=10093545 GT:DP:GQ:MIN_DP:PL 0/0:40:48:40:0,48,720 +20 10093546 . A . . END=10093547 GT:DP:GQ:MIN_DP:PL 0/0:39:45:38:0,45,675 +20 10093548 . G . . END=10093548 GT:DP:GQ:MIN_DP:PL 0/0:39:48:39:0,48,720 +20 10093549 . A . . END=10093550 GT:DP:GQ:MIN_DP:PL 0/0:38:45:37:0,45,675 +20 10093551 . G . . END=10093552 GT:DP:GQ:MIN_DP:PL 0/0:39:39:38:0,39,585 +20 10093553 . G . . END=10093557 GT:DP:GQ:MIN_DP:PL 0/0:37:24:37:0,24,360 +20 10093558 . T . . END=10093558 GT:DP:GQ:MIN_DP:PL 0/0:37:21:37:0,21,315 +20 10093559 . T . . END=10093559 GT:DP:GQ:MIN_DP:PL 0/0:37:18:37:0,18,270 +20 10093560 . T . . END=10093562 GT:DP:GQ:MIN_DP:PL 0/0:37:15:36:0,15,225 +20 10093563 . G . . END=10093565 GT:DP:GQ:MIN_DP:PL 0/0:37:18:37:0,18,270 +20 10093566 . T . . END=10093566 GT:DP:GQ:MIN_DP:PL 0/0:38:12:38:0,12,180 +20 10093567 . G . . END=10093567 GT:DP:GQ:MIN_DP:PL 0/0:37:9:37:0,9,135 +20 10093568 . G GTT, 856.73 . DP=28;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=102100,28 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,24,0:24:75:0|1:10093568_G_GTT:894,75,0,894,75,894:0,0,14,10 +20 10093569 . T . . END=10093569 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,0 +20 10093570 . T . . END=10093573 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20 10093574 . T . . END=10093579 GT:DP:GQ:MIN_DP:PL 0/0:35:72:34:0,72,1080 +20 10093580 . T . . END=10093580 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,993 +20 10093581 . T . . END=10093581 GT:DP:GQ:MIN_DP:PL 0/0:33:14:33:0,14,864 +20 10093582 . G . . END=10093582 GT:DP:GQ:MIN_DP:PL 0/0:33:47:33:0,47,848 +20 10093583 . G . . END=10093583 GT:DP:GQ:MIN_DP:PL 0/0:34:40:34:0,40,920 +20 10093584 . T G, 0.01 . BaseQRankSum=-2.073;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=86400,24;ReadPosRankSum=1.048 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:20,4,0:24:2:0|1:10093568_G_GTT:2,0,468,60,479,540:8,12,4,0 +20 10093585 . T . . END=10093585 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1042 +20 10093586 . T . . END=10093586 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10093587 . G . . END=10093589 GT:DP:GQ:MIN_DP:PL 0/0:31:75:30:0,75,904 +20 10093590 . T . . END=10093591 GT:DP:GQ:MIN_DP:PL 0/0:34:83:33:0,83,818 +20 10093592 . T . . END=10093592 GT:DP:GQ:MIN_DP:PL 0/0:31:57:31:0,57,762 +20 10093593 . T . . END=10093595 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10093596 . G . . END=10093596 GT:DP:GQ:MIN_DP:PL 0/0:30:56:30:0,56,745 +20 10093597 . T . . END=10093599 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10093600 . T . . END=10093600 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20 10093601 . G . . END=10093602 GT:DP:GQ:MIN_DP:PL 0/0:35:82:33:0,82,927 +20 10093603 . T . . END=10093605 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20 10093606 . G . . END=10093610 GT:DP:GQ:MIN_DP:PL 0/0:38:84:34:0,84,884 +20 10093611 . G . . END=10093611 GT:DP:GQ:MIN_DP:PL 0/0:37:51:37:0,51,947 +20 10093612 . T . . END=10093612 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1260 +20 10093613 . C . . END=10093613 GT:DP:GQ:MIN_DP:PL 0/0:31:50:31:0,50,780 +20 10093614 . T . . END=10093623 GT:DP:GQ:MIN_DP:PL 0/0:34:81:30:0,81,1215 +20 10093624 . G . . END=10093624 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10093625 . A . . END=10093625 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,941 +20 10093626 . G . . END=10093627 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10093628 . C . . END=10093628 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10093629 . T . . END=10093631 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1071 +20 10093632 . C . . END=10093655 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1110 +20 10093656 . T . . END=10093656 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1117 +20 10093657 . G . . END=10093744 GT:DP:GQ:MIN_DP:PL 0/0:45:99:35:0,103,1102 +20 10093745 . C . . END=10093746 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1440 +20 10093747 . C . . END=10093748 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1485 +20 10093749 . C . . END=10093751 GT:DP:GQ:MIN_DP:PL 0/0:41:96:39:0,96,1440 +20 10093752 . C . . END=10093753 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 +20 10093754 . A . . END=10093754 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20 10093755 . C . . END=10093829 GT:DP:GQ:MIN_DP:PL 0/0:47:99:38:0,102,1359 +20 10093830 . C . . END=10093830 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1160 +20 10093831 . T . . END=10093839 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,115,1238 +20 10093840 . A . . END=10093841 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1260 +20 10093842 . T . . END=10093915 GT:DP:GQ:MIN_DP:PL 0/0:47:99:38:0,101,1151 +20 10093916 . A . . END=10093917 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1050 +20 10093918 . A . . END=10093919 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10093920 . C . . END=10093920 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1060 +20 10093921 . A . . END=10093921 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20 10093922 . C . . END=10093923 GT:DP:GQ:MIN_DP:PL 0/0:39:91:37:0,91,1230 +20 10093924 . G . . END=10093925 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10093926 . A . . END=10093926 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10093927 . C . . END=10093930 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10093931 . C . . END=10093932 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10093933 . T . . END=10093934 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10093935 . G . . END=10093935 GT:DP:GQ:MIN_DP:PL 0/0:35:56:35:0,56,936 +20 10093936 . A . . END=10093938 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10093939 . C . . END=10093939 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1019 +20 10093940 . T . . END=10093947 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20 10093948 . C . . END=10093948 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,944 +20 10093949 . T . . END=10093953 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1005 +20 10093954 . G . . END=10093970 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1012 +20 10093971 . A . . END=10093971 GT:DP:GQ:MIN_DP:PL 0/0:40:84:40:0,84,1122 +20 10093972 . C . . END=10093975 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10093976 . T . . END=10093976 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1212 +20 10093977 . T . . END=10093977 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1199 +20 10093978 . G . . END=10093982 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,108,1620 +20 10093983 . T . . END=10093983 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1277 +20 10093984 . G . . END=10093996 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1195 +20 10093997 . T . . END=10093997 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1225 +20 10093998 . A . . END=10094041 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,104,1218 +20 10094042 . T . . END=10094042 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1203 +20 10094043 . T . . END=10094054 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1185 +20 10094055 . G . . END=10094055 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1108 +20 10094056 . T . . END=10094059 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20 10094060 . A . . END=10094060 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10094061 . A . . END=10094066 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10094067 . T . . END=10094072 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10094073 . A . . END=10094079 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1075 +20 10094080 . T . . END=10094082 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10094083 . T . . END=10094084 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10094085 . G . . END=10094085 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1076 +20 10094086 . T . . END=10094101 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1153 +20 10094102 . A . . END=10094102 GT:DP:GQ:MIN_DP:PL 0/0:42:76:42:0,76,1168 +20 10094103 . C . . END=10094137 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,101,1217 +20 10094138 . A . . END=10094138 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1249 +20 10094139 . C . . END=10094403 GT:DP:GQ:MIN_DP:PL 0/0:49:99:37:0,100,1165 +20 10094404 . C . . END=10094404 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1181 +20 10094405 . A . . END=10094408 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1117 +20 10094409 . C . . END=10094409 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1121 +20 10094410 . A . . END=10094413 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10094414 . C . . END=10094414 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1064 +20 10094415 . A . . END=10094419 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10094420 . G . . END=10094422 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1077 +20 10094423 . A . . END=10094429 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10094430 . G . . END=10094430 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1102 +20 10094431 . G . . END=10094442 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10094443 . T . . END=10094443 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10094444 . A . . END=10094444 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1099 +20 10094445 . A . . END=10094449 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1083 +20 10094450 . A . . END=10094452 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10094453 . T . . END=10094453 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,965 +20 10094454 . A . . END=10094454 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10094455 . C . . END=10094462 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1088 +20 10094463 . C . . END=10094463 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,1036 +20 10094464 . C . . END=10094466 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1068 +20 10094467 . A . . END=10094467 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1097 +20 10094468 . A . . END=10094472 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10094473 . T . . END=10094473 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1013 +20 10094474 . C . . END=10094486 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10094487 . C . . END=10094487 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1082 +20 10094488 . T . . END=10094493 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10094494 . C . . END=10094498 GT:DP:GQ:MIN_DP:PL 0/0:37:95:36:0,95,1093 +20 10094499 . C . . END=10094501 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1152 +20 10094502 . T . . END=10094502 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1099 +20 10094503 . G . . END=10094505 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1138 +20 10094506 . A . . END=10094506 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1147 +20 10094507 . G . . END=10094512 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20 10094513 . A . . END=10094513 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1141 +20 10094514 . C . . END=10094760 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,99,1130 +20 10094761 . A . . END=10094761 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1450 +20 10094762 . G . . END=10094769 GT:DP:GQ:MIN_DP:PL 0/0:53:99:51:0,120,1800 +20 10094770 . A . . END=10094770 GT:DP:GQ:MIN_DP:PL 0/0:53:87:53:0,87,1503 +20 10094771 . A . . END=10094773 GT:DP:GQ:MIN_DP:PL 0/0:51:99:49:0,120,1800 +20 10094774 . C . . END=10094774 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1393 +20 10094775 . A . . END=10094792 GT:DP:GQ:MIN_DP:PL 0/0:49:99:45:0,120,1800 +20 10094793 . G . . END=10094793 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1249 +20 10094794 . T . . END=10094898 GT:DP:GQ:MIN_DP:PL 0/0:47:99:43:0,114,1358 +20 10094899 . G . . END=10094899 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1388 +20 10094900 . G . . END=10094973 GT:DP:GQ:MIN_DP:PL 0/0:48:99:44:0,104,1371 +20 10094974 . A . . END=10094974 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1282 +20 10094975 . A . . END=10094986 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,117,1755 +20 10094987 . C . . END=10094987 GT:DP:GQ:MIN_DP:PL 0/0:45:97:45:0,97,1265 +20 10094988 . C . . END=10094988 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +20 10094989 . T . . END=10094989 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1236 +20 10094990 . T . . END=10094994 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,108,1620 +20 10094995 . A . . END=10094995 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1169 +20 10094996 . C . . END=10095004 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1108 +20 10095005 . A . . END=10095005 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1160 +20 10095006 . A . . END=10095069 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1096 +20 10095070 . A . . END=10095070 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1066 +20 10095071 . A . . END=10095080 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,100,1081 +20 10095081 . A . . END=10095081 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1108 +20 10095082 . A . . END=10095098 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1089 +20 10095099 . C . . END=10095101 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1033 +20 10095102 . A . . END=10095117 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1074 +20 10095118 . A . . END=10095118 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1067 +20 10095119 . A . . END=10095121 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10095122 . T . . END=10095127 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20 10095128 . T . . END=10095128 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,986 +20 10095129 . A . . END=10095132 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10095133 . G . . END=10095133 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,937 +20 10095134 . C . . END=10095134 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10095135 . T . . END=10095161 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10095162 . A . . END=10095172 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,989 +20 10095173 . C . . END=10095182 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1023 +20 10095183 . T . . END=10095184 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10095185 . T . . END=10095186 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10095187 . G . . END=10095196 GT:DP:GQ:MIN_DP:PL 0/0:36:90:32:0,90,1124 +20 10095197 . C . . END=10095197 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20 10095198 . T . . END=10095200 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10095201 . C . . END=10095203 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10095204 . A . . END=10095205 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20 10095206 . T . . END=10095206 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1081 +20 10095207 . T . . END=10095209 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1093 +20 10095210 . T . . END=10095213 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20 10095214 . T . . END=10095236 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1002 +20 10095237 . T . . END=10095237 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10095238 . T . . END=10095238 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1083 +20 10095239 . T . . END=10095240 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10095241 . A . . END=10095241 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1071 +20 10095242 . A . . END=10095245 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10095246 . T . . END=10095246 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1045 +20 10095247 . C . . END=10095247 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,992 +20 10095248 . A . . END=10095248 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1066 +20 10095249 . A . . END=10095250 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10095251 . G . . END=10095260 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1112 +20 10095261 . A . . END=10095261 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1106 +20 10095262 . T . . END=10095278 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1051 +20 10095279 . A . . END=10095285 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1350 +20 10095286 . G . . END=10095288 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20 10095289 . T . . END=10095289 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,925 +20 10095290 . T . . END=10095299 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10095300 . A . . END=10095300 GT:DP:GQ:MIN_DP:PL 0/0:29:64:29:0,64,867 +20 10095301 . G . . END=10095302 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10095303 . A . . END=10095303 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,910 +20 10095304 . A . . END=10095305 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10095306 . T . . END=10095307 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20 10095308 . A . . END=10095310 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,923 +20 10095311 . T . . END=10095311 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,864 +20 10095312 . C . . END=10095318 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,871 +20 10095319 . T . . END=10095327 GT:DP:GQ:MIN_DP:PL 0/0:30:75:29:0,75,1125 +20 10095328 . G . . END=10095329 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20 10095330 . T . . END=10095330 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20 10095331 . T . . END=10095335 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10095336 . A . . END=10095341 GT:DP:GQ:MIN_DP:PL 0/0:29:72:26:0,72,820 +20 10095342 . G . . END=10095344 GT:DP:GQ:MIN_DP:PL 0/0:28:69:27:0,69,1035 +20 10095345 . C . . END=10095350 GT:DP:GQ:MIN_DP:PL 0/0:30:72:28:0,72,1080 +20 10095351 . C . . END=10095351 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10095352 . T . . END=10095352 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,822 +20 10095353 . A . . END=10095362 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,840 +20 10095363 . T . . END=10095363 GT:DP:GQ:MIN_DP:PL 0/0:29:68:29:0,68,841 +20 10095364 . C . . END=10095364 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,892 +20 10095365 . C . . END=10095366 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,920 +20 10095367 . T . . END=10095367 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,908 +20 10095368 . T . . END=10095372 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,941 +20 10095373 . T . . END=10095373 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,979 +20 10095374 . G . . END=10095376 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,971 +20 10095377 . C . . END=10095381 GT:DP:GQ:MIN_DP:PL 0/0:33:80:32:0,80,947 +20 10095382 . G . . END=10095385 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10095386 . G . . END=10095387 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10095388 . G . . END=10095395 GT:DP:GQ:MIN_DP:PL 0/0:33:72:30:0,72,1080 +20 10095396 . C . . END=10095412 GT:DP:GQ:MIN_DP:PL 0/0:34:63:32:0,63,945 +20 10095413 . T . . END=10095415 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,810 +20 10095416 . C . . END=10095416 GT:DP:GQ:MIN_DP:PL 0/0:37:51:37:0,51,765 +20 10095417 . C . . END=10095417 GT:DP:GQ:MIN_DP:PL 0/0:40:48:40:0,48,720 +20 10095418 . T . . END=10095419 GT:DP:GQ:MIN_DP:PL 0/0:40:45:39:0,45,675 +20 10095420 . A . . END=10095421 GT:DP:GQ:MIN_DP:PL 0/0:40:39:40:0,39,585 +20 10095422 . A . . END=10095422 GT:DP:GQ:MIN_DP:PL 0/0:42:36:42:0,36,540 +20 10095423 . T . . END=10095423 GT:DP:GQ:MIN_DP:PL 0/0:43:33:43:0,33,495 +20 10095424 . A . . END=10095426 GT:DP:GQ:MIN_DP:PL 0/0:40:30:40:0,30,450 +20 10095427 . C . . END=10095427 GT:DP:GQ:MIN_DP:PL 0/0:41:27:41:0,27,405 +20 10095428 . A . . END=10095428 GT:DP:GQ:MIN_DP:PL 0/0:41:24:41:0,24,360 +20 10095429 . C . . END=10095429 GT:DP:GQ:MIN_DP:PL 0/0:41:21:41:0,21,315 +20 10095430 . A . . END=10095430 GT:DP:GQ:MIN_DP:PL 0/0:40:18:40:0,18,270 +20 10095431 . A . . END=10095431 GT:DP:GQ:MIN_DP:PL 0/0:39:15:39:0,15,225 +20 10095432 . GTGATGA G, 1179.73 . DP=35;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=126000,35 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095439 . T . . END=10095439 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +20 10095440 . G . . END=10095468 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1021 +20 10095469 . T . . END=10095472 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1037 +20 10095473 . G . . END=10095473 GT:DP:GQ:MIN_DP:PL 0/0:33:54:33:0,54,948 +20 10095474 . A . . END=10095475 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,1016 +20 10095476 . G . . END=10095476 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,939 +20 10095477 . A . . END=10095478 GT:DP:GQ:MIN_DP:PL 0/0:35:96:32:0,96,1056 +20 10095479 . A . . END=10095499 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1117 +20 10095500 . C . . END=10095500 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1096 +20 10095501 . T . . END=10095502 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,101,1151 +20 10095503 . G . . END=10095503 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1135 +20 10095504 . G . . END=10095508 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10095509 . A . . END=10095509 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1111 +20 10095510 . C . . END=10095512 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20 10095513 . T . . END=10095513 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1123 +20 10095514 . G . . END=10095521 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20 10095522 . T . . END=10095522 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1135 +20 10095523 . G . . END=10095532 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1620 +20 10095533 . T . . END=10095533 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1137 +20 10095534 . A . . END=10095535 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20 10095536 . T . . END=10095537 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1113 +20 10095538 . C . . END=10095538 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1120 +20 10095539 . C . . END=10095541 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20 10095542 . A . . END=10095542 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1072 +20 10095543 . T . . END=10095560 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,102,1107 +20 10095561 . A . . END=10095564 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20 10095565 . T . . END=10095565 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20 10095566 . G . . END=10095566 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1140 +20 10095567 . A . . END=10095568 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20 10095569 . A . . END=10095573 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10095574 . C . . END=10095575 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10095576 . G . . END=10095580 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,93,1395 +20 10095581 . T . . END=10095581 GT:DP:GQ:MIN_DP:PL 0/0:34:66:34:0,66,998 +20 10095582 . A . . END=10095587 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,966 +20 10095588 . A . . END=10095591 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10095592 . A . . END=10095592 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1095 +20 10095593 . C . . END=10095597 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10095598 . G . . END=10095598 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1128 +20 10095599 . A . . END=10095636 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,100,1121 +20 10095637 . G . . END=10095637 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1059 +20 10095638 . A . . END=10095639 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10095640 . C . . END=10095640 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1069 +20 10095641 . A . . END=10095647 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10095648 . T . . END=10095653 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1072 +20 10095654 . G . . END=10095654 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10095655 . T . . END=10095655 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10095656 . T . . END=10095658 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,100,1111 +20 10095659 . G . . END=10095659 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10095660 . A . . END=10095661 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10095662 . G . . END=10095662 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1111 +20 10095663 . C . . END=10095668 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10095669 . T . . END=10095669 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1241 +20 10095670 . T . . END=10095692 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1144 +20 10095693 . A . . END=10095693 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1170 +20 10095694 . T . . END=10095694 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20 10095695 . A . . END=10095696 GT:DP:GQ:MIN_DP:PL 0/0:37:92:36:0,92,1167 +20 10095697 . C . . END=10095697 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1043 +20 10095698 . C . . END=10095701 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10095702 . A . . END=10095711 GT:DP:GQ:MIN_DP:PL 0/0:33:84:30:0,84,1260 +20 10095712 . C . . END=10095712 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,881 +20 10095713 . A . . END=10095727 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10095728 . C . . END=10095728 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10095729 . T . . END=10095735 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10095736 . C . . END=10095740 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10095741 . A . . END=10095741 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,972 +20 10095742 . G . . END=10095742 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20 10095743 . G . . END=10095743 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10095744 . T . . END=10095744 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10095745 . T . . END=10095746 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10095747 . T . . END=10095749 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1059 +20 10095750 . G . . END=10095761 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10095762 . C . . END=10095762 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1021 +20 10095763 . G . . END=10095770 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,100,1099 +20 10095771 . T . . END=10095771 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,1071 +20 10095772 . A . . END=10096152 GT:DP:GQ:MIN_DP:PL 0/0:48:99:36:0,101,1104 +20 10096153 . A . . END=10096153 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10096154 . T . . END=10096163 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20 10096164 . A . . END=10096164 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1081 +20 10096165 . G . . END=10096189 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1122 +20 10096190 . T . . END=10096190 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1267 +20 10096191 . C . . END=10096212 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,102,1255 +20 10096213 . A . . END=10096213 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1140 +20 10096214 . T . . END=10096236 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1223 +20 10096237 . G . . END=10096237 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1175 +20 10096238 . T . . END=10096242 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,120,1221 +20 10096243 . G . . END=10096243 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1181 +20 10096244 . G . . END=10096244 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1228 +20 10096245 . A . . END=10096245 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1235 +20 10096246 . A . . END=10096317 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,108,1181 +20 10096318 . G . . END=10096318 GT:DP:GQ:MIN_DP:PL 0/0:48:94:48:0,94,1351 +20 10096319 . C . . END=10096356 GT:DP:GQ:MIN_DP:PL 0/0:49:99:44:0,120,1800 +20 10096357 . A G, 1137.77 . BaseQRankSum=0.964;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=1.547 GT:AD:DP:GQ:PL:SB 1/1:1,41,0:42:94:1166,94,0,1169,121,1196:1,0,25,16 +20 10096358 . T . . END=10096455 GT:DP:GQ:MIN_DP:PL 0/0:48:99:43:0,104,1361 +20 10096456 . A . . END=10096456 GT:DP:GQ:MIN_DP:PL 0/0:52:98:52:0,98,1401 +20 10096457 . T . . END=10096717 GT:DP:GQ:MIN_DP:PL 0/0:60:99:43:0,99,1273 +20 10096718 . C T, 0 . BaseQRankSum=-0.222;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=190800,53;ReadPosRankSum=0.856 GT:AD:DP:GQ:PL:SB 0/0:49,2,0:51:99:0,107,1451,146,1456,1495:25,24,1,1 +20 10096719 . T . . END=10096732 GT:DP:GQ:MIN_DP:PL 0/0:61:99:55:0,120,1800 +20 10096733 . C T, 1718.77 . BaseQRankSum=1.162;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=212400,59;ReadPosRankSum=-0.933 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1747,143,0,1750,168,1775:0,1,27,29 +20 10096734 . G . . END=10096767 GT:DP:GQ:MIN_DP:PL 0/0:60:99:57:0,120,1800 +20 10096768 . A C, 1756.77 . DP=57;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=206500,57 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1785,168,0,1785,168,1785:0,0,26,30 +20 10096769 . A . . END=10096857 GT:DP:GQ:MIN_DP:PL 0/0:55:99:50:0,102,1530 +20 10096858 . C . . END=10096858 GT:DP:GQ:MIN_DP:PL 0/0:54:96:54:0,96,1440 +20 10096859 . T . . END=10096861 GT:DP:GQ:MIN_DP:PL 0/0:54:87:53:0,87,1305 +20 10096862 . A . . END=10096874 GT:DP:GQ:MIN_DP:PL 0/0:55:63:47:0,63,945 +20 10096875 . A . . END=10096876 GT:DP:GQ:MIN_DP:PL 0/0:51:57:50:0,57,855 +20 10096877 . G . . END=10096878 GT:DP:GQ:MIN_DP:PL 0/0:51:48:50:0,48,720 +20 10096879 . T . . END=10096879 GT:DP:GQ:MIN_DP:PL 0/0:51:42:51:0,42,630 +20 10096880 . G . . END=10096880 GT:DP:GQ:MIN_DP:PL 0/0:50:39:50:0,39,585 +20 10096881 . A . . END=10096881 GT:DP:GQ:MIN_DP:PL 0/0:52:36:52:0,36,540 +20 10096882 . G . . END=10096882 GT:DP:GQ:MIN_DP:PL 0/0:52:33:52:0,33,495 +20 10096883 . A . . END=10096885 GT:DP:GQ:MIN_DP:PL 0/0:53:27:48:0,27,405 +20 10096886 . T . . END=10096888 GT:DP:GQ:MIN_DP:PL 0/0:53:21:52:0,21,315 +20 10096889 . T . . END=10096889 GT:DP:GQ:MIN_DP:PL 0/0:52:18:52:0,18,270 +20 10096890 . C . . END=10096893 GT:DP:GQ:MIN_DP:PL 0/0:52:15:50:0,15,225 +20 10096894 . A . . END=10096894 GT:DP:GQ:MIN_DP:PL 0/0:50:12:50:0,12,180 +20 10096895 . A . . END=10096895 GT:DP:GQ:MIN_DP:PL 0/0:50:9:50:0,9,135 +20 10096896 . T . . END=10096896 GT:DP:GQ:MIN_DP:PL 0/0:48:6:48:0,6,90 +20 10096897 . T . . END=10096898 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +20 10096899 . G T, 1806.77 . DP=41;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=148900,41 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,41,0:41:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,14,27 +20 10096900 . G . . END=10096904 GT:DP:GQ:MIN_DP:PL 0/0:47:0:46:0,0,0 +20 10096905 . TA T, 1797.73 . DP=40;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=145300,40 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096907 . A . . END=10096907 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +20 10096908 . T . . END=10096924 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,112,1358 +20 10096925 . T C, 335.77 . BaseQRankSum=-4.687;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=-0.614 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:364,0,556,424,609,1033:6,14,7,11 +20 10096926 . G . . END=10096932 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,118,1289 +20 10096933 . G C, 1701.77 . DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,38,0:38:99:0|1:10096933_G_C:1730,117,0,1730,117,1730:0,0,13,25 +20 10096934 . T . . END=10096957 GT:DP:GQ:MIN_DP:PL 0/0:48:99:43:0,116,1435 +20 10096958 . G A, 1868.77 . DP=47;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=169200,47 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,47,0:47:99:0|1:10096933_G_C:1897,141,0,1897,141,1897:0,0,16,31 +20 10096959 . G . . END=10097023 GT:DP:GQ:MIN_DP:PL 0/0:54:99:40:0,99,1197 +20 10097024 . A . . END=10097024 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1215 +20 10097025 . G . . END=10097039 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,104,1197 +20 10097040 . C . . END=10097040 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1144 +20 10097041 . A . . END=10097042 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +20 10097043 . T . . END=10097043 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1137 +20 10097044 . T . . END=10097061 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1134 +20 10097062 . T . . END=10097066 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1395 +20 10097067 . A . . END=10097068 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1305 +20 10097069 . A . . END=10097074 GT:DP:GQ:MIN_DP:PL 0/0:43:90:42:0,90,1350 +20 10097075 . T G, 1027.77 . BaseQRankSum=1.822;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=122400,34;ReadPosRankSum=1.530 GT:AD:DP:GQ:PL:SB 1/1:1,33,0:34:92:1056,92,0,1058,99,1065:0,1,16,17 +20 10097076 . A . . END=10097079 GT:DP:GQ:MIN_DP:PL 0/0:41:81:40:0,81,1215 +20 10097080 . A . . END=10097085 GT:DP:GQ:MIN_DP:PL 0/0:43:72:42:0,72,1080 +20 10097086 . A . . END=10097089 GT:DP:GQ:MIN_DP:PL 0/0:42:60:41:0,60,900 +20 10097090 . T . . END=10097090 GT:DP:GQ:MIN_DP:PL 0/0:41:54:41:0,54,810 +20 10097091 . C . . END=10097091 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,765 +20 10097092 . A . . END=10097092 GT:DP:GQ:MIN_DP:PL 0/0:39:42:39:0,42,630 +20 10097093 . G . . END=10097094 GT:DP:GQ:MIN_DP:PL 0/0:39:39:38:0,39,585 +20 10097095 . T . . END=10097096 GT:DP:GQ:MIN_DP:PL 0/0:40:33:40:0,33,495 +20 10097097 . A . . END=10097097 GT:DP:GQ:MIN_DP:PL 0/0:38:30:38:0,30,450 +20 10097098 . A . . END=10097098 GT:DP:GQ:MIN_DP:PL 0/0:36:24:36:0,24,360 +20 10097099 . T . . END=10097099 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,270 +20 10097100 . T . . END=10097100 GT:DP:GQ:MIN_DP:PL 0/0:39:21:39:0,21,315 +20 10097101 . C CTTTT, 970.73 . DP=28;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=100800,28 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:71:1008,71,0,1008,71,1009:0,0,13,9 +20 10097102 . T . . END=10097102 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +20 10097103 . T . . END=10097107 GT:DP:GQ:MIN_DP:PL 0/0:36:60:35:0,60,900 +20 10097108 . T . . END=10097108 GT:DP:GQ:MIN_DP:PL 0/0:36:72:36:0,72,1080 +20 10097109 . T . . END=10097111 GT:DP:GQ:MIN_DP:PL 0/0:36:66:34:0,66,990 +20 10097112 . C T, 0 . BaseQRankSum=-1.189;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=108000,30;ReadPosRankSum=-0.833 GT:AD:DP:GQ:PL:SB 0/0:27,3,0:30:36:0,36,662,79,670,713:14,13,3,0 +20 10097113 . T . . END=10097115 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1080 +20 10097116 . T . . END=10097116 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,794 +20 10097117 . T . . END=10097117 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +20 10097118 . G . . END=10097120 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,602 +20 10097121 . A . . END=10097121 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,767 +20 10097122 . T . . END=10097122 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,920 +20 10097123 . G . . END=10097123 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,879 +20 10097124 . G . . END=10097133 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,816 +20 10097134 . C . . END=10097140 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10097141 . T . . END=10097141 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,988 +20 10097142 . A . . END=10097144 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,960 +20 10097145 . C . . END=10097145 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,919 +20 10097146 . T . . END=10097146 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1009 +20 10097147 . G . . END=10097148 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,101,955 +20 10097149 . A . . END=10097149 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1005 +20 10097150 . G . . END=10097152 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,104,1001 +20 10097153 . C . . END=10097153 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,971 +20 10097154 . A . . END=10097177 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,102,1033 +20 10097178 . A . . END=10097178 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1133 +20 10097179 . A . . END=10097356 GT:DP:GQ:MIN_DP:PL 0/0:45:99:39:0,100,1124 +20 10097357 . A . . END=10097357 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1242 +20 10097358 . A . . END=10097416 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1162 +20 10097417 . T . . END=10097417 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1151 +20 10097418 . G . . END=10097421 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +20 10097422 . T . . END=10097428 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +20 10097429 . G . . END=10097432 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20 10097433 . A . . END=10097433 GT:DP:GQ:MIN_DP:PL 0/0:30:64:30:0,64,876 +20 10097434 . C . . END=10097434 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10097435 . T . . END=10097436 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,990 +20 10097437 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC T, 890.73 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097470 . T . . END=10097470 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,0 +20 10097471 . T . . END=10097471 GT:DP:GQ:MIN_DP:PL 0/0:18:33:18:0,33,495 +20 10097472 . T . . END=10097472 GT:DP:GQ:MIN_DP:PL 0/0:19:36:19:0,36,540 +20 10097473 . C . . END=10097473 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,95 +20 10097474 . T . . END=10097474 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,585 +20 10097475 . T . . END=10097476 GT:DP:GQ:MIN_DP:PL 0/0:18:0:17:0,0,261 +20 10097477 . C . . END=10097477 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +20 10097478 . T . . END=10097478 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,311 +20 10097479 . T . . END=10097479 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +20 10097480 . T . . END=10097482 GT:DP:GQ:MIN_DP:PL 0/0:17:0:15:0,0,280 +20 10097483 . T . . END=10097484 GT:DP:GQ:MIN_DP:PL 0/0:20:45:19:0,45,531 +20 10097485 . C . . END=10097485 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,435 +20 10097486 . T . . END=10097487 GT:DP:GQ:MIN_DP:PL 0/0:21:54:20:0,54,625 +20 10097488 . T . . END=10097488 GT:DP:GQ:MIN_DP:PL 0/0:19:24:19:0,24,531 +20 10097489 . C . . END=10097489 GT:DP:GQ:MIN_DP:PL 0/0:18:22:18:0,22,509 +20 10097490 . T . . END=10097490 GT:DP:GQ:MIN_DP:PL 0/0:21:32:21:0,32,562 +20 10097491 . T . . END=10097491 GT:DP:GQ:MIN_DP:PL 0/0:21:29:21:0,29,589 +20 10097492 . T . . END=10097493 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +20 10097494 . T . . END=10097495 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,609 +20 10097496 . C . . END=10097496 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,557 +20 10097497 . A . . END=10097497 GT:DP:GQ:MIN_DP:PL 0/0:19:28:19:0,28,490 +20 10097498 . C . . END=10097501 GT:DP:GQ:MIN_DP:PL 0/0:22:60:20:0,60,598 +20 10097502 . T . . END=10097503 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +20 10097504 . T . . END=10097504 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,762 +20 10097505 . T . . END=10097505 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20 10097506 . T . . END=10097506 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,846 +20 10097507 . C . . END=10097507 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,831 +20 10097508 . C . . END=10097508 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,822 +20 10097509 . C . . END=10097512 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,687 +20 10097513 . G . . END=10097514 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,759 +20 10097515 . T . . END=10097515 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,854 +20 10097516 . T . . END=10097516 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,886 +20 10097517 . A . . END=10097517 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,863 +20 10097518 . T . . END=10097521 GT:DP:GQ:MIN_DP:PL 0/0:32:92:31:0,92,941 +20 10097522 . G . . END=10097522 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,955 +20 10097523 . G . . END=10097525 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,931 +20 10097526 . C . . END=10097526 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,881 +20 10097527 . A . . END=10097529 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,940 +20 10097530 . T . . END=10097530 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,982 +20 10097531 . G . . END=10097532 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20 10097533 . T . . END=10097533 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,960 +20 10097534 . A . . END=10097534 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,967 +20 10097535 . T . . END=10097535 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1011 +20 10097536 . T . . END=10097537 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10097538 . G . . END=10097538 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,995 +20 10097539 . G . . END=10097542 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,931 +20 10097543 . C . . END=10097543 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,914 +20 10097544 . A . . END=10097546 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,957 +20 10097547 . A . . END=10097547 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,948 +20 10097548 . G . . END=10097549 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,875 +20 10097550 . A . . END=10097550 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,911 +20 10097551 . A . . END=10097554 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,933 +20 10097555 . C . . END=10097555 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,872 +20 10097556 . T . . END=10097556 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,984 +20 10097557 . T . . END=10097557 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,900 +20 10097558 . T . . END=10097558 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,940 +20 10097559 . A . . END=10097559 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,835 +20 10097560 . G . . END=10097560 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10097561 . T . . END=10097561 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,948 +20 10097562 . G . . END=10097564 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,939 +20 10097565 . T . . END=10097565 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,951 +20 10097566 . A . . END=10097566 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,934 +20 10097567 . T . . END=10097569 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10097570 . G . . END=10097570 GT:DP:GQ:MIN_DP:PL 0/0:31:65:31:0,65,891 +20 10097571 . T . . END=10097572 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,936 +20 10097573 . A . . END=10097573 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,936 +20 10097574 . G . . END=10097583 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,971 +20 10097584 . C . . END=10097585 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1001 +20 10097586 . C . . END=10097586 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,911 +20 10097587 . C . . END=10097587 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,938 +20 10097588 . C . . END=10097588 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,940 +20 10097589 . A . . END=10097591 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1030 +20 10097592 . A . . END=10097592 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1016 +20 10097593 . C . . END=10097595 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1012 +20 10097596 . G . . END=10097598 GT:DP:GQ:MIN_DP:PL 0/0:34:91:32:0,91,954 +20 10097599 . C . . END=10097601 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1063 +20 10097602 . T . . END=10097602 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1102 +20 10097603 . A . . END=10097603 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1041 +20 10097604 . T . . END=10097604 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10097605 . A . . END=10097605 GT:DP:GQ:MIN_DP:PL 0/0:35:82:35:0,82,1062 +20 10097606 . C . . END=10097606 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10097607 . A . . END=10097607 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1065 +20 10097608 . C . . END=10097609 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10097610 . G . . END=10097610 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1036 +20 10097611 . A . . END=10097613 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10097614 . C . . END=10097628 GT:DP:GQ:MIN_DP:PL 0/0:33:81:29:0,81,1014 +20 10097629 . T . . END=10097629 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10097630 . T . . END=10097630 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10097631 . A . . END=10097631 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,916 +20 10097632 . T . . END=10097633 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +20 10097634 . C . . END=10097634 GT:DP:GQ:MIN_DP:PL 0/0:29:68:29:0,68,806 +20 10097635 . C . . END=10097635 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10097636 . T . . END=10097639 GT:DP:GQ:MIN_DP:PL 0/0:28:66:27:0,66,792 +20 10097640 . C . . END=10097640 GT:DP:GQ:MIN_DP:PL 0/0:26:56:26:0,56,715 +20 10097641 . C . . END=10097648 GT:DP:GQ:MIN_DP:PL 0/0:25:63:24:0,63,945 +20 10097649 . A . . END=10097649 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,649 +20 10097650 . C . . END=10097650 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 +20 10097651 . C . . END=10097653 GT:DP:GQ:MIN_DP:PL 0/0:24:57:21:0,57,855 +20 10097654 . T . . END=10097657 GT:DP:GQ:MIN_DP:PL 0/0:23:54:21:0,54,810 +20 10097658 . C . . END=10097665 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,765 +20 10097666 . T . . END=10097666 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,556 +20 10097667 . C . . END=10097667 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,568 +20 10097668 . C . . END=10097668 GT:DP:GQ:MIN_DP:PL 0/0:18:22:18:0,22,461 +20 10097669 . A . . END=10097669 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +20 10097670 . A . . END=10097670 GT:DP:GQ:MIN_DP:PL 0/0:19:41:19:0,41,505 +20 10097671 . A . . END=10097671 GT:DP:GQ:MIN_DP:PL 0/0:19:20:19:0,20,481 +20 10097672 . G . . END=10097672 GT:DP:GQ:MIN_DP:PL 0/0:21:47:21:0,47,612 +20 10097673 . T . . END=10097675 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 +20 10097676 . A . . END=10097676 GT:DP:GQ:MIN_DP:PL 0/0:23:58:23:0,58,642 +20 10097677 . T . . END=10097677 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +20 10097678 . T . . END=10097678 GT:DP:GQ:MIN_DP:PL 0/0:23:46:23:0,46,645 +20 10097679 . G . . END=10097679 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,570 +20 10097680 . T . . END=10097681 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +20 10097682 . T . . END=10097682 GT:DP:GQ:MIN_DP:PL 0/0:23:45:23:0,45,601 +20 10097683 . C . . END=10097683 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20 10097684 . A . . END=10097684 GT:DP:GQ:MIN_DP:PL 0/0:24:53:24:0,53,706 +20 10097685 . T . . END=10097685 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20 10097686 . T . . END=10097692 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,764 +20 10097693 . T . . END=10097694 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,792 +20 10097695 . C . . END=10097697 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20 10097698 . T . . END=10097698 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,805 +20 10097699 . T . . END=10097700 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,823 +20 10097701 . T . . END=10097704 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,887 +20 10097705 . T . . END=10097705 GT:DP:GQ:MIN_DP:PL 0/0:28:57:28:0,57,847 +20 10097706 . T . . END=10097710 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20 10097711 . T . . END=10097711 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20 10097712 . G . . END=10097712 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,872 +20 10097713 . C . . END=10097720 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10097721 . C . . END=10097723 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10097724 . A . . END=10097724 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,905 +20 10097725 . G . . END=10097728 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,905 +20 10097729 . C . . END=10097729 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,971 +20 10097730 . A . . END=10097737 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,981 +20 10097738 . G . . END=10097750 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,1005 +20 10097751 . T C, 965.77 . BaseQRankSum=-0.368;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=1.082 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:82:994,82,0,997,110,1024:0,1,16,21 +20 10097752 . G . . END=10097763 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1575 +20 10097764 . T . . END=10097764 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1141 +20 10097765 . C . . END=10097788 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,111,1193 +20 10097789 . T C, 1301.77 . DP=43;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=152289,43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1330,129,0,1330,129,1330:0,0,22,21 +20 10097790 . C . . END=10097868 GT:DP:GQ:MIN_DP:PL 0/0:42:99:36:0,100,1119 +20 10097869 . T . . END=10097869 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1136 +20 10097870 . T . . END=10097879 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1120 +20 10097880 . G . . END=10097882 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20 10097883 . G . . END=10097897 GT:DP:GQ:MIN_DP:PL 0/0:33:84:30:0,84,1260 +20 10097898 . C . . END=10097898 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,922 +20 10097899 . C . . END=10097900 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10097901 . C . . END=10097905 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10097906 . G . . END=10097906 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1026 +20 10097907 . C . . END=10097907 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1084 +20 10097908 . C . . END=10097920 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10097921 . A . . END=10097921 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1058 +20 10097922 . A . . END=10097922 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,991 +20 10097923 . C . . END=10097923 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10097924 . T . . END=10097924 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1038 +20 10097925 . C . . END=10097927 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10097928 . G A, 910.77 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:939,87,0,939,87,939:0,0,21,8 +20 10097929 . A . . END=10097929 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,972 +20 10097930 . C . . END=10097931 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1013 +20 10097932 . T . . END=10097932 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1011 +20 10097933 . C . . END=10097936 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1031 +20 10097937 . T . . END=10097937 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1057 +20 10097938 . G . . END=10097939 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20 10097940 . T . . END=10097942 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20 10097943 . A . . END=10097943 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,993 +20 10097944 . C . . END=10097946 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10097947 . G . . END=10097970 GT:DP:GQ:MIN_DP:PL 0/0:32:81:27:0,81,866 +20 10097971 . A . . END=10097978 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +20 10097979 . C . . END=10097980 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20 10097981 . T . . END=10097985 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,947 +20 10097986 . C . . END=10097988 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10097989 . T . . END=10097996 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20 10097997 . G . . END=10097997 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,958 +20 10097998 . C . . END=10098002 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10098003 . T . . END=10098006 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,896 +20 10098007 . T . . END=10098007 GT:DP:GQ:MIN_DP:PL 0/0:30:79:30:0,79,871 +20 10098008 . C . . END=10098011 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20 10098012 . C . . END=10098014 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10098015 . A . . END=10098015 GT:DP:GQ:MIN_DP:PL 0/0:33:54:33:0,54,926 +20 10098016 . T . . END=10098022 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,913 +20 10098023 . G . . END=10098027 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10098028 . C . . END=10098028 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1002 +20 10098029 . T . . END=10098031 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10098032 . T . . END=10098037 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10098038 . A . . END=10098038 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1122 +20 10098039 . G . . END=10098056 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1151 +20 10098057 . G . . END=10098057 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1085 +20 10098058 . A . . END=10098059 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1184 +20 10098060 . C . . END=10098060 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1139 +20 10098061 . A . . END=10098065 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,114,1222 +20 10098066 . A . . END=10098066 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1176 +20 10098067 . A . . END=10098099 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,100,1191 +20 10098100 . T . . END=10098100 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1236 +20 10098101 . A . . END=10098109 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,111,1294 +20 10098110 . G C, 1864.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,44,0:44:99:0|1:10098110_G_C:1893,135,0,1893,135,1893:0,0,18,26 +20 10098111 . T . . END=10098127 GT:DP:GQ:MIN_DP:PL 0/0:45:99:44:0,114,1710 +20 10098128 . G . . END=10098128 GT:DP:GQ:MIN_DP:PL 0/0:42:89:42:0,89,1200 +20 10098129 . T . . END=10098134 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,118,1352 +20 10098135 . C A, 1751.77 . DP=42;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=151200,42 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,41,0:41:99:0|1:10098110_G_C:1780,126,0,1780,126,1780:0,0,21,20 +20 10098136 . A . . END=10098163 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,106,1249 +20 10098164 . G . . END=10098164 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1218 +20 10098165 . C . . END=10098172 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1139 +20 10098173 . T . . END=10098176 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +20 10098177 . C . . END=10098177 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20 10098178 . C . . END=10098178 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1215 +20 10098179 . A . . END=10098180 GT:DP:GQ:MIN_DP:PL 0/0:37:72:37:0,72,1080 +20 10098181 . T . . END=10098195 GT:DP:GQ:MIN_DP:PL 0/0:34:63:33:0,63,945 +20 10098196 . A . . END=10098197 GT:DP:GQ:MIN_DP:PL 0/0:33:57:33:0,57,855 +20 10098198 . A . . END=10098198 GT:DP:GQ:MIN_DP:PL 0/0:33:54:33:0,54,810 +20 10098199 . A . . END=10098199 GT:DP:GQ:MIN_DP:PL 0/0:33:45:33:0,45,675 +20 10098200 . C . . END=10098200 GT:DP:GQ:MIN_DP:PL 0/0:33:39:33:0,39,585 +20 10098201 . T . . END=10098201 GT:DP:GQ:MIN_DP:PL 0/0:34:27:34:0,27,405 +20 10098202 . G . . END=10098203 GT:DP:GQ:MIN_DP:PL 0/0:33:21:33:0,21,315 +20 10098204 . G . . END=10098207 GT:DP:GQ:MIN_DP:PL 0/0:31:15:30:0,15,225 +20 10098208 . T . . END=10098208 GT:DP:GQ:MIN_DP:PL 0/0:31:12:31:0,12,180 +20 10098209 . T . . END=10098218 GT:DP:GQ:MIN_DP:PL 0/0:29:0:26:0,0,0 +20 10098219 . TATATATA T, 1331.73 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=118800,33 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098227 . T . . END=10098228 GT:DP:GQ:MIN_DP:PL 0/0:31:0:30:0,0,0 +20 10098229 . A . . END=10098229 GT:DP:GQ:MIN_DP:PL 0/0:34:32:34:0,32,910 +20 10098230 . T . . END=10098230 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +20 10098231 . A . . END=10098233 GT:DP:GQ:MIN_DP:PL 0/0:37:84:36:0,84,1260 +20 10098234 . T . . END=10098236 GT:DP:GQ:MIN_DP:PL 0/0:41:93:40:0,93,1395 +20 10098237 . A T, 1316.77 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=121936,34 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,33,0:33:98:0|1:10098219_TATATATA_T:1345,98,0,1345,98,1345:0,0,16,17 +20 10098238 . A . . END=10098241 GT:DP:GQ:MIN_DP:PL 0/0:42:84:41:0,84,1260 +20 10098242 . A . . END=10098242 GT:DP:GQ:MIN_DP:PL 0/0:35:44:35:0,44,916 +20 10098243 . T . . END=10098248 GT:DP:GQ:MIN_DP:PL 0/0:42:81:39:0,81,1215 +20 10098249 . A . . END=10098249 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,662 +20 10098250 . T . . END=10098254 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1080 +20 10098255 . G . . END=10098255 GT:DP:GQ:MIN_DP:PL 0/0:36:52:36:0,52,897 +20 10098256 . T . . END=10098256 GT:DP:GQ:MIN_DP:PL 0/0:45:57:45:0,57,855 +20 10098257 . A . . END=10098260 GT:DP:GQ:MIN_DP:PL 0/0:48:0:47:0,0,405 +20 10098261 . T . . END=10098262 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +20 10098263 . T . . END=10098265 GT:DP:GQ:MIN_DP:PL 0/0:49:90:44:0,90,1350 +20 10098266 . A . . END=10098270 GT:DP:GQ:MIN_DP:PL 0/0:44:81:43:0,81,1215 +20 10098271 . A . . END=10098275 GT:DP:GQ:MIN_DP:PL 0/0:49:72:43:0,72,1080 +20 10098276 . T . . END=10098278 GT:DP:GQ:MIN_DP:PL 0/0:42:60:37:0,60,900 +20 10098279 . A . . END=10098279 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,810 +20 10098280 . A . . END=10098284 GT:DP:GQ:MIN_DP:PL 0/0:48:51:42:0,51,765 +20 10098285 . T . . END=10098288 GT:DP:GQ:MIN_DP:PL 0/0:43:45:41:0,45,675 +20 10098289 . A . . END=10098290 GT:DP:GQ:MIN_DP:PL 0/0:41:33:40:0,33,495 +20 10098291 . A . . END=10098292 GT:DP:GQ:MIN_DP:PL 0/0:42:27:41:0,27,405 +20 10098293 . G . . END=10098293 GT:DP:GQ:MIN_DP:PL 0/0:29:24:29:0,24,360 +20 10098294 . T . . END=10098297 GT:DP:GQ:MIN_DP:PL 0/0:40:15:40:0,15,225 +20 10098298 . A . . END=10098298 GT:DP:GQ:MIN_DP:PL 0/0:36:12:36:0,12,180 +20 10098299 . T . . END=10098299 GT:DP:GQ:MIN_DP:PL 0/0:39:9:39:0,9,135 +20 10098300 . T . . END=10098305 GT:DP:GQ:MIN_DP:PL 0/0:41:6:35:0,6,90 +20 10098306 . G . . END=10098307 GT:DP:GQ:MIN_DP:PL 0/0:32:3:27:0,3,45 +20 10098308 . A . . END=10098311 GT:DP:GQ:MIN_DP:PL 0/0:39:0:33:0,0,0 +20 10098312 . T . . END=10098321 GT:DP:GQ:MIN_DP:PL 0/0:40:72:37:0,72,1080 +20 10098322 . A . . END=10098329 GT:DP:GQ:MIN_DP:PL 0/0:38:60:32:0,60,900 +20 10098330 . A . . END=10098338 GT:DP:GQ:MIN_DP:PL 0/0:38:45:31:0,45,675 +20 10098339 . A . . END=10098342 GT:DP:GQ:MIN_DP:PL 0/0:35:0:33:0,0,217 +20 10098343 . T . . END=10098343 GT:DP:GQ:MIN_DP:PL 0/0:34:51:34:0,51,765 +20 10098344 . A . . END=10098344 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +20 10098345 . T . . END=10098345 GT:DP:GQ:MIN_DP:PL 0/0:33:39:33:0,39,585 +20 10098346 . A . . END=10098348 GT:DP:GQ:MIN_DP:PL 0/0:31:36:28:0,36,540 +20 10098349 . A . . END=10098349 GT:DP:GQ:MIN_DP:PL 0/0:29:27:29:0,27,405 +20 10098350 . T . . END=10098350 GT:DP:GQ:MIN_DP:PL 0/0:29:24:29:0,24,360 +20 10098351 . T . . END=10098351 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,225 +20 10098352 . T . . END=10098352 GT:DP:GQ:MIN_DP:PL 0/0:29:12:29:0,12,180 +20 10098353 . A . . END=10098356 GT:DP:GQ:MIN_DP:PL 0/0:28:9:24:0,9,135 +20 10098357 . G . . END=10098357 GT:DP:GQ:MIN_DP:PL 0/0:23:6:23:0,6,90 +20 10098358 . T . . END=10098431 GT:DP:GQ:MIN_DP:PL 0/0:9:0:2:0,0,0 +20 10098432 . A . . END=10098435 GT:DP:GQ:MIN_DP:PL 0/0:2:3:2:0,3,45 +20 10098436 . A . . END=10098572 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +20 10098573 . A . . END=10098574 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +20 10098575 . A . . END=10098580 GT:DP:GQ:MIN_DP:PL 0/0:10:0:9:0,0,0 +20 10098581 . T . . END=10098586 GT:DP:GQ:MIN_DP:PL 0/0:12:27:11:0,27,405 +20 10098587 . T . . END=10098587 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +20 10098588 . T . . END=10098594 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 +20 10098595 . A . . END=10098595 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,365 +20 10098596 . A . . END=10098597 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,0 +20 10098598 . G . . END=10098598 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,346 +20 10098599 . T . . END=10098599 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,374 +20 10098600 . G . . END=10098600 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,353 +20 10098601 . T . . END=10098601 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,399 +20 10098602 . A . . END=10098602 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,415 +20 10098603 . T . . END=10098608 GT:DP:GQ:MIN_DP:PL 0/0:14:21:13:0,21,315 +20 10098609 . A . . END=10098612 GT:DP:GQ:MIN_DP:PL 0/0:14:18:14:0,18,270 +20 10098613 . A . . END=10098613 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,74 +20 10098614 . T . . END=10098614 GT:DP:GQ:MIN_DP:PL 0/0:13:18:13:0,18,270 +20 10098615 . A . . END=10098615 GT:DP:GQ:MIN_DP:PL 0/0:14:9:14:0,9,363 +20 10098616 . T . . END=10098616 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,363 +20 10098617 . T . . END=10098617 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,6 +20 10098618 . A . . END=10098618 GT:DP:GQ:MIN_DP:PL 0/0:14:9:14:0,9,356 +20 10098619 . T . . END=10098624 GT:DP:GQ:MIN_DP:PL 0/0:14:15:14:0,15,225 +20 10098625 . A . . END=10098626 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,384 +20 10098627 . G . . END=10098627 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,322 +20 10098628 . T . . END=10098628 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,380 +20 10098629 . G . . END=10098632 GT:DP:GQ:MIN_DP:PL 0/0:14:0:12:0,0,44 +20 10098633 . A . . END=10098636 GT:DP:GQ:MIN_DP:PL 0/0:15:27:14:0,27,405 +20 10098637 . A . . END=10098637 GT:DP:GQ:MIN_DP:PL 0/0:15:12:15:0,12,379 +20 10098638 . A . . END=10098638 GT:DP:GQ:MIN_DP:PL 0/0:14:9:14:0,9,359 +20 10098639 . T . . END=10098643 GT:DP:GQ:MIN_DP:PL 0/0:15:21:14:0,21,315 +20 10098644 . ATT A, 187.87 . DP=7;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=8736,7 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,4,0:4:15:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098647 . A . . END=10098647 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,228 +20 10098648 . T . . END=10098653 GT:DP:GQ:MIN_DP:PL 0/0:18:33:17:0,33,495 +20 10098654 . A . . END=10098657 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,155 +20 10098658 . G . . END=10098658 GT:DP:GQ:MIN_DP:PL 0/0:16:29:16:0,29,391 +20 10098659 . T . . END=10098659 GT:DP:GQ:MIN_DP:PL 0/0:18:30:18:0,30,450 +20 10098660 . G A, 286.80 . DP=10;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=16843,10 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,7,0:7:21:0|1:10098644_ATT_A:315,21,0,315,21,315:0,0,5,2 +20 10098661 . T . . END=10098666 GT:DP:GQ:MIN_DP:PL 0/0:20:24:19:0,24,360 +20 10098667 . T . . END=10098667 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,433 +20 10098668 . A AAT, 367.74 . DP=11;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=20443,11 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,8,0:8:27:0|1:10098644_ATT_A:405,27,0,405,27,405:0,0,6,2 +20 10098669 . A . . END=10098669 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,63 +20 10098670 . T . . END=10098671 GT:DP:GQ:MIN_DP:PL 0/0:21:9:21:0,9,135 +20 10098672 . T . . END=10098674 GT:DP:GQ:MIN_DP:PL 0/0:21:12:21:0,12,180 +20 10098675 . A . . END=10098678 GT:DP:GQ:MIN_DP:PL 0/0:21:0:20:0,0,339 +20 10098679 . T . . END=10098683 GT:DP:GQ:MIN_DP:PL 0/0:22:18:21:0,18,270 +20 10098684 . A . . END=10098684 GT:DP:GQ:MIN_DP:PL 0/0:20:15:20:0,15,225 +20 10098685 . A . . END=10098685 GT:DP:GQ:MIN_DP:PL 0/0:19:12:19:0,12,180 +20 10098686 . T . . END=10098688 GT:DP:GQ:MIN_DP:PL 0/0:19:9:19:0,9,135 +20 10098689 . GTA G, 592.73 . DP=17;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=37368,17 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,13,0:13:42:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098692 . T . . END=10098692 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,0 +20 10098693 . A . . END=10098700 GT:DP:GQ:MIN_DP:PL 0/0:21:21:20:0,21,315 +20 10098701 . T . . END=10098703 GT:DP:GQ:MIN_DP:PL 0/0:21:15:20:0,15,225 +20 10098704 . A G, 781.77 . DP=20;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=48168,20 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,16,0:16:54:0|1:10098644_ATT_A:810,54,0,810,54,810:0,0,11,5 +20 10098705 . T . . END=10098717 GT:DP:GQ:MIN_DP:PL 0/0:21:15:20:0,15,225 +20 10098718 . T . . END=10098719 GT:DP:GQ:MIN_DP:PL 0/0:20:6:20:0,6,90 +20 10098720 . A . . END=10098724 GT:DP:GQ:MIN_DP:PL 0/0:20:3:19:0,3,45 +20 10098725 . T . . END=10098728 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +20 10098729 . T TATATA, 817.73 . DP=23;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=61892,23 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,19,0:19:57:0|1:10098644_ATT_A:855,57,0,855,57,855:0,0,12,7 +20 10098730 . A . . END=10098730 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +20 10098731 . T . . END=10098732 GT:DP:GQ:MIN_DP:PL 0/0:20:27:20:0,27,405 +20 10098733 . T . . END=10098734 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,493 +20 10098735 . T . . END=10098737 GT:DP:GQ:MIN_DP:PL 0/0:20:27:20:0,27,405 +20 10098738 . A . . END=10098738 GT:DP:GQ:MIN_DP:PL 0/0:20:23:20:0,23,595 +20 10098739 . T . . END=10098739 GT:DP:GQ:MIN_DP:PL 0/0:17:27:17:0,27,405 +20 10098740 . T . . END=10098748 GT:DP:GQ:MIN_DP:PL 0/0:15:18:15:0,18,270 +20 10098749 . A . . END=10098754 GT:DP:GQ:MIN_DP:PL 0/0:16:12:15:0,12,180 +20 10098755 . T . . END=10098761 GT:DP:GQ:MIN_DP:PL 0/0:18:9:16:0,9,135 +20 10098762 . A . . END=10098770 GT:DP:GQ:MIN_DP:PL 0/0:20:3:18:0,3,45 +20 10098771 . A . . END=10098775 GT:DP:GQ:MIN_DP:PL 0/0:21:0:20:0,0,0 +20 10098776 . T . . END=10098779 GT:DP:GQ:MIN_DP:PL 0/0:21:3:20:0,3,45 +20 10098780 . T . . END=10098782 GT:DP:GQ:MIN_DP:PL 0/0:21:6:21:0,6,90 +20 10098783 . A . . END=10098783 GT:DP:GQ:MIN_DP:PL 0/0:22:9:22:0,9,135 +20 10098784 . TAC T, 286.75 . DP=10;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=33076,10 GT:AD:DP:GQ:PL:SB 1/1:0,8,0:8:24:324,24,0,324,24,324:0,0,4,4 +20 10098787 . A . . END=10098787 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,0 +20 10098788 . C . . END=10098788 GT:DP:GQ:MIN_DP:PL 0/0:18:22:18:0,22,489 +20 10098789 . T . . END=10098789 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,635 +20 10098790 . G . . END=10098790 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,590 +20 10098791 . A . . END=10098791 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +20 10098792 . G . . END=10098792 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,586 +20 10098793 . A . . END=10098793 GT:DP:GQ:MIN_DP:PL 0/0:23:35:23:0,35,612 +20 10098794 . T . . END=10098797 GT:DP:GQ:MIN_DP:PL 0/0:24:63:24:0,63,945 +20 10098798 . T . . END=10098798 GT:DP:GQ:MIN_DP:PL 0/0:24:43:24:0,43,722 +20 10098799 . T . . END=10098799 GT:DP:GQ:MIN_DP:PL 0/0:24:63:24:0,63,945 +20 10098800 . G . . END=10098800 GT:DP:GQ:MIN_DP:PL 0/0:23:42:23:0,42,612 +20 10098801 . T . . END=10098804 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,900 +20 10098805 . G . . END=10098805 GT:DP:GQ:MIN_DP:PL 0/0:22:33:22:0,33,541 +20 10098806 . T . . END=10098806 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 +20 10098807 . T . . END=10098808 GT:DP:GQ:MIN_DP:PL 0/0:25:60:24:0,60,900 +20 10098809 . T . . END=10098809 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,855 +20 10098810 . G . . END=10098810 GT:DP:GQ:MIN_DP:PL 0/0:24:56:24:0,56,711 +20 10098811 . T . . END=10098818 GT:DP:GQ:MIN_DP:PL 0/0:27:61:24:0,61,699 +20 10098819 . G . . END=10098819 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,685 +20 10098820 . A . . END=10098821 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10098822 . G . . END=10098822 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,702 +20 10098823 . A . . END=10098824 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10098825 . G . . END=10098825 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,710 +20 10098826 . T . . END=10098826 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20 10098827 . T . . END=10098833 GT:DP:GQ:MIN_DP:PL 0/0:26:60:25:0,60,900 +20 10098834 . T . . END=10098835 GT:DP:GQ:MIN_DP:PL 0/0:26:51:26:0,51,765 +20 10098836 . G . . END=10098836 GT:DP:GQ:MIN_DP:PL 0/0:27:45:27:0,45,675 +20 10098837 . T . . END=10098838 GT:DP:GQ:MIN_DP:PL 0/0:27:42:26:0,42,630 +20 10098839 . C . . END=10098842 GT:DP:GQ:MIN_DP:PL 0/0:26:36:25:0,36,540 +20 10098843 . A . . END=10098851 GT:DP:GQ:MIN_DP:PL 0/0:26:33:23:0,33,495 +20 10098852 . T . . END=10098852 GT:DP:GQ:MIN_DP:PL 0/0:27:30:27:0,30,450 +20 10098853 . G . . END=10098857 GT:DP:GQ:MIN_DP:PL 0/0:27:27:27:0,27,405 +20 10098858 . G . . END=10098859 GT:DP:GQ:MIN_DP:PL 0/0:26:24:25:0,24,360 +20 10098860 . T . . END=10098860 GT:DP:GQ:MIN_DP:PL 0/0:27:21:27:0,21,315 +20 10098861 . G . . END=10098861 GT:DP:GQ:MIN_DP:PL 0/0:27:18:27:0,18,270 +20 10098862 . T . . END=10098866 GT:DP:GQ:MIN_DP:PL 0/0:30:15:28:0,15,225 +20 10098867 . T . . END=10098869 GT:DP:GQ:MIN_DP:PL 0/0:32:9:30:0,9,135 +20 10098870 . G . . END=10098873 GT:DP:GQ:MIN_DP:PL 0/0:32:6:32:0,6,90 +20 10098874 . A . . END=10098880 GT:DP:GQ:MIN_DP:PL 0/0:33:3:32:0,3,45 +20 10098881 . C . . END=10098884 GT:DP:GQ:MIN_DP:PL 0/0:33:6:32:0,6,90 +20 10098885 . C CA, 1125.73 . DP=30;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=105859,30 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:1163,87,0,1163,87,1163:0,0,16,13 +20 10098886 . C . . END=10098886 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,0 +20 10098887 . C . . END=10098888 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1027 +20 10098889 . A . . END=10098889 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,972 +20 10098890 . C . . END=10098893 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,918 +20 10098894 . G . . END=10098894 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,929 +20 10098895 . T . . END=10098896 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1041 +20 10098897 . C . . END=10098898 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,995 +20 10098899 . A . . END=10098899 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10098900 . G . . END=10098902 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10098903 . A . . END=10098903 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,955 +20 10098904 . T . . END=10098904 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10098905 . T . . END=10098905 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1030 +20 10098906 . C . . END=10098915 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10098916 . A . . END=10098928 GT:DP:GQ:MIN_DP:PL 0/0:31:81:27:0,81,858 +20 10098929 . G . . END=10098929 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,826 +20 10098930 . C . . END=10098942 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,814 +20 10098943 . T . . END=10098943 GT:DP:GQ:MIN_DP:PL 0/0:27:70:27:0,70,840 +20 10098944 . G . . END=10098944 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,869 +20 10098945 . T C, 764.77 . DP=26;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=90989,26 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:793,75,0,793,75,793:0,0,13,12 +20 10098946 . C . . END=10098946 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20 10098947 . T . . END=10098948 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20 10098949 . C . . END=10098949 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +20 10098950 . C . . END=10098953 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +20 10098954 . A . . END=10098956 GT:DP:GQ:MIN_DP:PL 0/0:30:66:29:0,66,990 +20 10098957 . C . . END=10098959 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,1080 +20 10098960 . G . . END=10098961 GT:DP:GQ:MIN_DP:PL 0/0:29:69:28:0,69,1035 +20 10098962 . C . . END=10098962 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +20 10098963 . T . . END=10098966 GT:DP:GQ:MIN_DP:PL 0/0:28:69:27:0,69,1035 +20 10098967 . T . . END=10098971 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20 10098972 . T . . END=10098983 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,866 +20 10098984 . A . . END=10099008 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,977 +20 10099009 . G . . END=10099010 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20 10099011 . C . . END=10099011 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,941 +20 10099012 . T . . END=10099017 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20 10099018 . C . . END=10099018 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10099019 . G . . END=10099019 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10099020 . A . . END=10099022 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10099023 . T . . END=10099023 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10099024 . C . . END=10099025 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10099026 . T . . END=10099026 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1048 +20 10099027 . G . . END=10099027 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10099028 . A . . END=10099028 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,999 +20 10099029 . T C, 1248.77 . DP=29;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=101694,29 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,29,0:29:87:0|1:10099029_T_C:1277,87,0,1277,87,1277:0,0,17,12 +20 10099030 . C . . END=10099031 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20 10099032 . T . . END=10099033 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10099034 . C A, 1186.77 . DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=94494,27 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,17,10 +20 10099035 . G . . END=10099035 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10099036 . G . . END=10099036 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10099037 . T . . END=10099037 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,961 +20 10099038 . G . . END=10099038 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,972 +20 10099039 . A . . END=10099043 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,924 +20 10099044 . A C, 1186.77 . DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=91794,27 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,18,9 +20 10099045 . C . . END=10099045 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20 10099046 . T C, 1231.77 . DP=27;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=91794,27 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,27,0:27:84:0|1:10099029_T_C:1260,84,0,1260,84,1260:0,0,18,9 +20 10099047 . G . . END=10099050 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10099051 . C . . END=10099051 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,886 +20 10099052 . G . . END=10099054 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20 10099055 . T C, 1321.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=106194,31 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,30,0:30:90:0|1:10099029_T_C:1350,90,0,1350,90,1350:0,0,20,10 +20 10099056 . T . . END=10099056 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10099057 . C . . END=10099057 GT:DP:GQ:MIN_DP:PL 0/0:34:76:34:0,76,995 +20 10099058 . C . . END=10099061 GT:DP:GQ:MIN_DP:PL 0/0:34:87:32:0,87,1305 +20 10099062 . A . . END=10099062 GT:DP:GQ:MIN_DP:PL 0/0:34:73:34:0,73,1018 +20 10099063 . G . . END=10099068 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 +20 10099069 . A . . END=10099069 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,935 +20 10099070 . G . . END=10099073 GT:DP:GQ:MIN_DP:PL 0/0:37:81:36:0,81,1215 +20 10099074 . A . . END=10099078 GT:DP:GQ:MIN_DP:PL 0/0:39:72:38:0,72,1080 +20 10099079 . C T, 1357.77 . DP=32;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=110264,32 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,31,0:31:96:0|1:10099029_T_C:1386,96,0,1386,96,1386:0,0,20,11 +20 10099080 . G . . END=10099080 GT:DP:GQ:MIN_DP:PL 0/0:36:72:36:0,72,1080 +20 10099081 . T . . END=10099087 GT:DP:GQ:MIN_DP:PL 0/0:39:66:37:0,66,990 +20 10099088 . C . . END=10099090 GT:DP:GQ:MIN_DP:PL 0/0:36:54:35:0,54,810 +20 10099091 . C . . END=10099091 GT:DP:GQ:MIN_DP:PL 0/0:37:45:37:0,45,675 +20 10099092 . A . . END=10099094 GT:DP:GQ:MIN_DP:PL 0/0:37:39:36:0,39,585 +20 10099095 . C . . END=10099096 GT:DP:GQ:MIN_DP:PL 0/0:39:36:37:0,36,540 +20 10099097 . G . . END=10099097 GT:DP:GQ:MIN_DP:PL 0/0:41:25:41:0,25,1062 +20 10099098 . C . . END=10099098 GT:DP:GQ:MIN_DP:PL 0/0:40:30:40:0,30,1027 +20 10099099 . C . . END=10099099 GT:DP:GQ:MIN_DP:PL 0/0:40:6:40:0,6,1033 +20 10099100 . T . . END=10099100 GT:DP:GQ:MIN_DP:PL 0/0:38:30:38:0,30,450 +20 10099101 . G . . END=10099101 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,826 +20 10099102 . G . . END=10099104 GT:DP:GQ:MIN_DP:PL 0/0:38:30:36:0,30,450 +20 10099105 . T . . END=10099106 GT:DP:GQ:MIN_DP:PL 0/0:39:33:38:0,33,495 +20 10099107 . T . . END=10099107 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,787 +20 10099108 . T . . END=10099109 GT:DP:GQ:MIN_DP:PL 0/0:38:30:38:0,30,450 +20 10099110 . G . . END=10099110 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,675 +20 10099111 . T TTTTGTTTG, 1003.73 . DP=28;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=99409,28 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:72:1041,72,0,1042,72,1042:0,0,12,11 +20 10099112 . T . . END=10099112 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,97 +20 10099113 . T . . END=10099114 GT:DP:GQ:MIN_DP:PL 0/0:39:75:38:0,75,1125 +20 10099115 . G . . END=10099115 GT:DP:GQ:MIN_DP:PL 0/0:36:60:36:0,60,948 +20 10099116 . T . . END=10099117 GT:DP:GQ:MIN_DP:PL 0/0:39:78:38:0,78,1170 +20 10099118 . T . . END=10099124 GT:DP:GQ:MIN_DP:PL 0/0:40:81:36:0,81,1215 +20 10099125 . T . . END=10099125 GT:DP:GQ:MIN_DP:PL 0/0:40:47:40:0,47,1084 +20 10099126 . T . . END=10099129 GT:DP:GQ:MIN_DP:PL 0/0:39:90:37:0,90,1350 +20 10099130 . T . . END=10099131 GT:DP:GQ:MIN_DP:PL 0/0:41:0:40:0,0,709 +20 10099132 . T . . END=10099132 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20 10099133 . T . . END=10099134 GT:DP:GQ:MIN_DP:PL 0/0:39:93:37:0,93,1099 +20 10099135 . T . . END=10099135 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1228 +20 10099136 . T . . END=10099139 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,117,1755 +20 10099140 . G T, 1001.77 . DP=33;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=114618,33 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1030,93,0,1030,93,1030:0,0,15,16 +20 10099141 . G . . END=10099141 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1214 +20 10099142 . G . . END=10099142 GT:DP:GQ:MIN_DP:PL 0/0:41:22:41:0,22,1104 +20 10099143 . G . . END=10099143 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,1000 +20 10099144 . G . . END=10099144 GT:DP:GQ:MIN_DP:PL 0/0:39:41:39:0,41,1059 +20 10099145 . A . . END=10099145 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,1094 +20 10099146 . T . . END=10099146 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10099147 . G . . END=10099147 GT:DP:GQ:MIN_DP:PL 0/0:40:52:40:0,52,1104 +20 10099148 . A . . END=10099148 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1147 +20 10099149 . A . . END=10099149 GT:DP:GQ:MIN_DP:PL 0/0:39:50:39:0,50,1017 +20 10099150 . A . . END=10099150 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,929 +20 10099151 . T . . END=10099151 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1156 +20 10099152 . T . . END=10099163 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1171 +20 10099164 . G . . END=10099164 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1098 +20 10099165 . C . . END=10099180 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,103,1092 +20 10099181 . A . . END=10099181 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1188 +20 10099182 . T . . END=10099189 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,104,1261 +20 10099190 . G T, 1118.77 . DP=38;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=134009,38 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1147,108,0,1147,108,1147:0,0,19,17 +20 10099191 . C . . END=10099193 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,111,1665 +20 10099194 . A . . END=10099194 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1300 +20 10099195 . G . . END=10099215 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,947 +20 10099216 . C . . END=10099219 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10099220 . A G, 895.77 . DP=31;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:924,89,0,924,89,924:0,0,15,15 +20 10099221 . T . . END=10099223 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20 10099224 . A . . END=10099225 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10099226 . G . . END=10099226 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1066 +20 10099227 . C . . END=10099230 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1017 +20 10099231 . T . . END=10099231 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1108 +20 10099232 . C . . END=10099241 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1080 +20 10099242 . A . . END=10099252 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20 10099253 . T . . END=10099256 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20 10099257 . T . . END=10099257 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10099258 . G . . END=10099260 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20 10099261 . A . . END=10099264 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10099265 . C . . END=10099269 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10099270 . A . . END=10099296 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1033 +20 10099297 . T . . END=10099297 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10099298 . A . . END=10099303 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10099304 . T . . END=10099312 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1074 +20 10099313 . A . . END=10099314 GT:DP:GQ:MIN_DP:PL 0/0:35:83:35:0,83,1066 +20 10099315 . G . . END=10099319 GT:DP:GQ:MIN_DP:PL 0/0:36:92:35:0,92,1093 +20 10099320 . T . . END=10099320 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20 10099321 . T . . END=10099321 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1046 +20 10099322 . C . . END=10099323 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20 10099324 . T . . END=10099324 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1130 +20 10099325 . C . . END=10099325 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10099326 . A . . END=10099326 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,1075 +20 10099327 . T . . END=10099327 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1117 +20 10099328 . T . . END=10099328 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10099329 . T . . END=10099334 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1092 +20 10099335 . A . . END=10099335 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1093 +20 10099336 . G . . END=10099343 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10099344 . T . . END=10099345 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,988 +20 10099346 . G . . END=10099347 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20 10099348 . A . . END=10099348 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,856 +20 10099349 . C . . END=10099349 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,967 +20 10099350 . T . . END=10099351 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,979 +20 10099352 . C . . END=10099354 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1049 +20 10099355 . A . . END=10099355 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1034 +20 10099356 . C . . END=10099356 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1035 +20 10099357 . C . . END=10099358 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1047 +20 10099359 . T . . END=10099359 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1061 +20 10099360 . C . . END=10099366 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1046 +20 10099367 . T . . END=10099375 GT:DP:GQ:MIN_DP:PL 0/0:35:92:31:0,92,979 +20 10099376 . C . . END=10099379 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20 10099380 . G . . END=10099380 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1107 +20 10099381 . C . . END=10099382 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1138 +20 10099383 . T . . END=10099411 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1159 +20 10099412 . C . . END=10099415 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20 10099416 . G . . END=10099416 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1088 +20 10099417 . G . . END=10099429 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20 10099430 . A . . END=10099432 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20 10099433 . A . . END=10099433 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1144 +20 10099434 . G . . END=10099531 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,100,1153 +20 10099532 . A . . END=10099532 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1217 +20 10099533 . A . . END=10099534 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20 10099535 . G A, 1226.77 . DP=39;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1255,114,0,1255,114,1255:0,0,18,20 +20 10099536 . T . . END=10099556 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,103,1189 +20 10099557 . G . . END=10099557 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1104 +20 10099558 . A . . END=10099562 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20 10099563 . C . . END=10099563 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1182 +20 10099564 . A . . END=10099564 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20 10099565 . C T, 1315.77 . DP=44;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1344,128,0,1344,128,1344:0,0,19,24 +20 10099566 . T . . END=10099599 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,113,1225 +20 10099600 . T . . END=10099600 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1228 +20 10099601 . A . . END=10099606 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,117,1755 +20 10099607 . G . . END=10099607 GT:DP:GQ:MIN_DP:PL 0/0:42:73:42:0,73,1169 +20 10099608 . A . . END=10099623 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,104,1124 +20 10099624 . C . . END=10099624 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1120 +20 10099625 . T . . END=10099625 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,103,1186 +20 10099626 . A . . END=10099626 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20 10099627 . A . . END=10099637 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1222 +20 10099638 . T . . END=10099638 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1095 +20 10099639 . A . . END=10099640 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20 10099641 . A . . END=10099641 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1087 +20 10099642 . C . . END=10099704 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1087 +20 10099705 . A . . END=10099714 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20 10099715 . G . . END=10099716 GT:DP:GQ:MIN_DP:PL 0/0:32:73:31:0,73,878 +20 10099717 . C . . END=10099724 GT:DP:GQ:MIN_DP:PL 0/0:33:81:31:0,81,1215 +20 10099725 . A . . END=10099725 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20 10099726 . C . . END=10099726 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,958 +20 10099727 . C . . END=10099728 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20 10099729 . T . . END=10099734 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,905 +20 10099735 . T . . END=10099737 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10099738 . A . . END=10099739 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20 10099740 . C . . END=10099741 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20 10099742 . T . . END=10099743 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,873 +20 10099744 . A . . END=10099747 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20 10099748 . T . . END=10099748 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,859 +20 10099749 . G . . END=10099749 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10099750 . G . . END=10099750 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,985 +20 10099751 . A . . END=10099751 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10099752 . G . . END=10099752 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,953 +20 10099753 . C . . END=10099754 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10099755 . C T, 950.77 . DP=34;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:95:979,95,0,979,95,979:0,0,13,19 +20 10099756 . C . . END=10099756 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1001 +20 10099757 . T . . END=10099760 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1025 +20 10099761 . T . . END=10099761 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,991 +20 10099762 . G . . END=10099763 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20 10099764 . G . . END=10099764 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,897 +20 10099765 . G . . END=10099768 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20 10099769 . T . . END=10099769 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,943 +20 10099770 . A . . END=10099772 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10099773 . C . . END=10099773 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,931 +20 10099774 . A . . END=10099776 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20 10099777 . A . . END=10099780 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20 10099781 . A . . END=10099781 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1058 +20 10099782 . G . . END=10099782 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10099783 . T . . END=10099790 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1041 +20 10099791 . A . . END=10099792 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1077 +20 10099793 . T . . END=10099797 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1085 +20 10099798 . A . . END=10099798 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1074 +20 10099799 . T . . END=10099800 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20 10099801 . A . . END=10099804 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20 10099805 . A . . END=10099807 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20 10099808 . G . . END=10099809 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20 10099810 . C . . END=10099812 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,992 +20 10099813 . C . . END=10099814 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,926 +20 10099815 . A . . END=10099815 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10099816 . G . . END=10099816 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,992 +20 10099817 . A . . END=10099820 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1064 +20 10099821 . G . . END=10099821 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1039 +20 10099822 . G . . END=10099825 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20 10099826 . G . . END=10099826 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1018 +20 10099827 . A . . END=10099831 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20 10099832 . A G, 1083.77 . DP=36;ExcessHet=3.0103;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1112,108,0,1112,108,1112:0,0,16,20 +20 10099833 . T . . END=10099850 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1050 +20 10099851 . C . . END=10099851 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1040 +20 10099852 . A . . END=10099852 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10099853 . G . . END=10099856 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10099857 . G . . END=10099859 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20 10099860 . T . . END=10099860 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1044 +20 10099861 . G . . END=10099862 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1037 +20 10099863 . T . . END=10099863 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20 10099864 . C . . END=10099864 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20 10099865 . T . . END=10099867 GT:DP:GQ:MIN_DP:PL 0/0:36:92:34:0,92,1059 +20 10099868 . T . . END=10099868 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10099869 . A . . END=10099869 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1121 +20 10099870 . T . . END=10099870 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10099871 . G . . END=10099871 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1094 +20 10099872 . T . . END=10099881 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,996 +20 10099882 . T . . END=10099882 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1132 +20 10099883 . A . . END=10099883 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20 10099884 . A . . END=10099903 GT:DP:GQ:MIN_DP:PL 0/0:36:90:31:0,90,983 +20 10099904 . A . . END=10099906 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1052 +20 10099907 . A . . END=10099909 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,953 +20 10099910 . C . . END=10099910 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,933 +20 10099911 . T . . END=10099912 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20 10099913 . T . . END=10099913 GT:DP:GQ:MIN_DP:PL 0/0:34:60:34:0,60,980 +20 10099914 . T . . END=10099919 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20 10099920 . T . . END=10099923 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20 10099924 . A . . END=10099930 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20 10099931 . T . . END=10099931 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,925 +20 10099932 . T . . END=10099933 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20 10099934 . A . . END=10099936 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20 10099937 . A . . END=10099942 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20 10099943 . A . . END=10099943 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +20 10099944 . C . . END=10099968 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20 10099969 . A . . END=10099969 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20 10099970 . T . . END=10099970 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,943 +20 10099971 . C . . END=10099971 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20 10099972 . A . . END=10099975 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1010 +20 10099976 . C . . END=10099976 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1021 +20 10099977 . T . . END=10099979 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20 10099980 . T . . END=10099980 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1145 +20 10099981 . T . . END=10100000 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,110,1155 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf.idx b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/CombineGVCFs/YRIoffspring.chr20snippet.g.vcf.idx new file mode 100644 index 0000000000000000000000000000000000000000..032ca554d28c8c91e750bffd03c29e63e690bc09 GIT binary patch literal 42477 zcmeIz&x@8-6bJCDmf8=6iXz%ni-^GHz32YEf{S5hv;m!H93=~!#<%$uI!-gA*s8W| zBJD2-B*dUrEli>iB8nC*TGXO~2v_0CU6h@B&-2Q2`xp8O!+AZ=eb006x%YnFx#`K5 zw<)D|@ZZwv>Baqn!C>XwndQZ`!Sd$9^DFD?8)x5G9Byq6USB*vSY9}{wX(XnG1we# zENl%|21~0Kj=VHnI6WMkn4Lbmw6wXtvAVWAHeA^-dUI`ceSL9jY`+W=A|fVsXCZA$ zDkdGHaig+X@rq2!sr!o2Dp)S-`9u8*H`FCE`R?3!sh+HMK6KN6nY-dm)PB^r6I_$~ zes{o;IYq&TECml8)><1K$GETw-P9#%0w=lOx|>~>%_W<;@%;jpIBOzrMn6lsWe@h~4#^x`nJ#biXrH@mtq^!8dle|xv5{i8nKD+}QX#tB ztj(1b+r-DPSAmam&3fHm1!WnVsU4fj*c{tFI9IdTG)=cMHrpnv4Ucu2blcxj!D&8U 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END=10000383 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:90:35:0,90,1350 +20 10000384 . A . . END=10000386 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:86:34:0,86,1023 +20 10000387 . T . . END=10000388 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:75:34:0,75,1125 +20 10000389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:54:34:0,54,870 +20 10000390 . T . . END=10000391 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:78:32:0,78,1170 +20 10000392 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:63:32:0,63,884 +20 10000393 . A . . END=10000395 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:80:32:0,80,924 +20 10000396 . T . . END=10000400 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:76:30:0,76,906 +20 10000401 . T . . END=10000402 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:80:31:0,80,993 +20 10000403 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10000404 . T . . END=10000405 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:86:33:0,86,1022 +20 10000406 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,1350 +20 10000407 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:78:32:0,78,980 +20 10000408 . A . . END=10000416 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:81:29:0,81,984 +20 10000417 . G . . END=10000418 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:26:75:25:0,75,751 +20 10000419 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:27:62:27:0,62,788 +20 10000420 . A . . END=10000422 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10000423 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10000424 . A . . END=10000429 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10000430 . A . . END=10000431 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:28:62:27:0,62,843 +20 10000432 . A . . END=10000433 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:28:81:27:0,81,872 +20 10000434 . T . . END=10000436 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10000437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:67:29:0,67,855 +20 10000438 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:75:29:0,75,1125 +20 10000439 . T G, . . DP=107;ExcessHet=3.01;RAW_MQandDP=376276,107 GT:AD:DP:GQ:PL:SB ./.:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 ./.:0,27,0:27:80:716,80,0,716,80,716:0,0,19,8 +20 10000440 . T . . END=10000445 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:29:70:26:0,70,886 +20 10000446 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:26:58:26:0,58,812 +20 10000447 . A . . END=10000453 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:26:72:25:0,72,779 +20 10000454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:27:60:27:0,60,795 +20 10000455 . A . . END=10000460 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:27:78:26:0,78,834 +20 10000461 . T . . END=10000464 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:28:81:27:0,81,840 +20 10000465 . T . . END=10000466 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10000467 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:89:36:0,89,1053 +20 10000468 . G . . END=10000469 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:96:36:0,96,1003 +20 10000470 . A . . END=10000471 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,105,1038 +20 10000472 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:96:36:0,96,1074 +20 10000473 . T . . END=10000482 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,105,1062 +20 10000483 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:38:98:38:0,98,1096 +20 10000484 . A . . END=10000501 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:40:99:38:0,108,1620 +20 10000502 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:81:41:0,81,1156 +20 10000503 . A . . END=10000527 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:39:99:38:0,105,1147 +20 10000528 . C . . END=10000529 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:38:91:38:0,91,1074 +20 10000530 . G . . END=10000533 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:38:99:36:0,105,1135 +20 10000534 . T C, . . BaseQRankSum=-2.640e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=126000,35;ReadPosRankSum=-3.830e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:55:99:41:0,102,1530,102,1530,1530 ./.:19,16,0:35:99:.:336,0,521,393,568,962:11,8,8,8 +20 10000535 . G . . END=10000538 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:99:39:0,104,1184 +20 10000539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:95:41:0,95,1194 +20 10000540 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:85:41:0,85,1159 +20 10000541 . T . . END=10000543 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:42:99:42:0,105,1575 +20 10000544 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:89:41:0,89,1162 +20 10000545 . G . . END=10000547 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:99:40:0,102,1530 +20 10000548 . C . . END=10000550 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:40:80:38:0,80,975 +20 10000551 . T . . END=10000552 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:77:37:0,77,1088 +20 10000553 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:99:37:0,99,1485 +20 10000554 . C . . END=10000556 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:63:37:0,63,999 +20 10000557 . C . . END=10000567 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:34:99:33:0,99,976 +20 10000568 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:95:37:0,95,1124 +20 10000569 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:84:37:0,84,1150 +20 10000570 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:35:99:35:0,102,1530 +20 10000571 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:81:37:0,81,1049 +20 10000572 . A . . END=10000581 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,102,1081 +20 10000582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:35:77:35:0,77,1096 +20 10000583 . T . . END=10000585 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,105,988 +20 10000586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1503 ./.:36:99:35:0,105,988 +20 10000587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:34:52:34:0,52,911 +20 10000588 . C . . END=10000589 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:36:0,105,1575 +20 10000590 . G . . END=10000591 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:80:35:0,80,1092 +20 10000592 . C . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:90:36:0,90,1084 +20 10000593 . C . . END=10000595 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:35:0,105,1124 +20 10000596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:37:92:37:0,92,1120 +20 10000597 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:36:0,108,1110 +20 10000598 . T A, . . DP=80;ExcessHet=3.01;RAW_MQandDP=261228,80 GT:AD:DP:GQ:PL:SB ./.:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 ./.:0,31,0:31:93:992,93,0,992,93,992:0,0,14,17 +20 10000599 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:37:94:37:0,94,1126 +20 10000600 . A . . END=10000606 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:37:0,99,1171 +20 10000607 . A . . END=10000611 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:40:93:40:0,93,1395 +20 10000612 . A . . END=10000614 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:40:99:39:0,99,1485 +20 10000615 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:73:38:0,73,1138 +20 10000616 . A . . END=10000617 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:37:99:37:0,102,1530 +20 10000618 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:35:77:35:0,77,1043 +20 10000619 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:35:84:35:0,84,1092 +20 10000620 . A . . END=10000654 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:41:99:36:0,102,1145 +20 10000655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:94:38:0,94,1172 +20 10000656 . A . . END=10000658 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:36:0,105,1575 +20 10000659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:36:92:36:0,92,1094 +20 10000660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:38:0,100,1170 +20 10000661 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:93:38:0,93,1162 +20 10000662 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:38:0,108,1620 +20 10000663 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:86:38:0,86,1113 +20 10000664 . T . . END=10000693 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:42:99:37:0,99,1125 +20 10000694 . G A, . . BaseQRankSum=3.60;DP=119;ExcessHet=3.01;MQRankSum=-5.114e+00;RAW_MQandDP=194196,82;ReadPosRankSum=0.657 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,37,0:82:99:.:1037,0,1601,1173,1712,2885:25,20,18,19 ./.:.:42:99:37:0,99,1125,99,1125,1125 +20 10000695 . G . . END=10000757 GT:DP:GQ:MIN_DP:PL ./.:89:99:79:0,120,1800 ./.:42:99:37:0,99,1125 +20 10000758 . T A, . . DP=143;ExcessHet=3.01;RAW_MQandDP=443381,143 GT:AD:DP:GQ:PL:SB ./.:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 ./.:0,47,0:47:99:1415,140,0,1415,140,1415:0,0,26,21 +20 10000759 . A . . END=10000788 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:47:99:45:0,120,1800 +20 10000789 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:47:96:47:0,96,1315 +20 10000790 . A . . END=10000906 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:46:99:37:0,99,1115 +20 10000907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:94:37:0,94,1107 +20 10000908 . T . . END=10000912 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:37:0,105,1575 +20 10000913 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:79:37:0,79,1082 +20 10000914 . A . . END=10000927 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:35:0,99,1191 +20 10000928 . A . . END=10000936 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:34:0,90,1350 +20 10000937 . A . . END=10000942 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:84:30:0,84,1260 +20 10000943 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:79:32:0,79,912 +20 10000944 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10000945 . C . . END=10000948 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:84:33:0,84,980 +20 10000949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:78:32:0,78,905 +20 10000950 . C . . END=10000952 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:87:32:0,87,1305 +20 10000953 . T . . END=10000954 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:35:0,90,1350 +20 10000955 . A . . END=10000956 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:86:33:0,86,998 +20 10000957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10000958 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:70:33:0,70,970 +20 10000959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:88:33:0,88,1012 +20 10000960 . T . . END=10000963 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:31:0,93,949 +20 10000964 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,951 +20 10000965 . A . . END=10000967 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10000968 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,1006 +20 10000969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10000970 . C . . END=10000973 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:87:31:0,87,1305 +20 10000974 . T . . END=10000995 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10000996 . A . . END=10000999 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:31:0,84,1260 +20 10001000 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:65:32:0,65,872 +20 10001001 . G . . END=10001012 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:31:0,90,901 +20 10001013 . C . . END=10001014 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:83:33:0,83,933 +20 10001015 . A . . END=10001018 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:33:0,90,1350 +20 10001019 . T G, . . BaseQRankSum=-2.541e+00;DP=97;ExcessHet=3.01;MQRankSum=-7.498e+00;RAW_MQandDP=159195,65;ReadPosRankSum=-9.250e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,26,0:65:99:.:679,0,1426,796,1504,2300:17,22,14,12 ./.:.:32:81:32:0,81,1215,81,1215,1215 +20 10001020 . C . . END=10001023 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:81:32:0,81,1215 +20 10001024 . C . . END=10001028 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:72:30:0,72,885 +20 10001029 . T . . END=10001032 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:29:0,81,883 +20 10001033 . C . . END=10001036 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:30:0,90,962 +20 10001037 . A . . END=10001051 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:29:0,81,1215 +20 10001052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:75:29:0,75,911 +20 10001053 . A . . END=10001058 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:29:0,81,1215 +20 10001059 . C . . END=10001065 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001066 . T . . END=10001085 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:29:0,81,893 +20 10001086 . T . . END=10001089 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:78:31:0,78,1170 +20 10001090 . G . . END=10001097 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:30:0,81,1215 +20 10001098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:77:30:0,77,898 +20 10001100 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:90:30:0,90,964 +20 10001101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:87:29:0,87,908 +20 10001102 . A . . END=10001118 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,933 +20 10001119 . A . . END=10001129 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:33:82:31:0,82,949 +20 10001130 . T . . END=10001131 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:82:31:0,82,941 +20 10001133 . T . . END=10001144 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:90:31:0,90,963 +20 10001145 . G . . END=10001148 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:33:81:32:0,81,1215 +20 10001149 . A . . END=10001154 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:78:30:0,78,1170 +20 10001155 . G . . END=10001159 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:28:0,81,965 +20 10001160 . T . . END=10001169 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:90:30:0,90,957 +20 10001170 . T . . END=10001176 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:30:0,81,1215 +20 10001177 . A . . END=10001182 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:78:28:0,78,1170 +20 10001183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:29:0,81,1215 +20 10001184 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:75:29:0,75,859 +20 10001185 . A . . END=10001192 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:81:28:0,81,1215 +20 10001193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:60:29:0,60,916 +20 10001194 . A . . END=10001199 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:30:0,81,1215 +20 10001200 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:71:31:0,71,959 +20 10001201 . T . . END=10001212 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:27:0,81,851 +20 10001213 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:78:26:0,78,799 +20 10001214 . A . . END=10001215 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:81:27:0,81,859 +20 10001216 . T . . END=10001219 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:78:27:0,78,1170 +20 10001220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,845 +20 10001221 . T . . END=10001225 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:75:26:0,75,1125 +20 10001226 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,1035 +20 10001227 . A . . END=10001228 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:75:27:0,75,1125 +20 10001229 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:30:0,81,1215 +20 10001230 . T . . END=10001246 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:70:27:0,70,807 +20 10001247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:65:28:0,65,827 +20 10001248 . A . . END=10001251 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:75:25:0,75,758 +20 10001252 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,1035 +20 10001253 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:46:26:0,46,774 +20 10001254 . T . . END=10001255 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:72:26:0,72,1080 +20 10001256 . A . . END=10001268 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:63:24:0,63,945 +20 10001269 . A . . END=10001270 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:72:26:0,72,1080 +20 10001271 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:25:69:25:0,69,1035 +20 10001272 . T . . END=10001274 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:72:26:0,72,1080 +20 10001275 . A . . END=10001277 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:84:30:0,84,1260 +20 10001278 . A . . END=10001281 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:78:27:0,78,1170 +20 10001282 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:29:0,81,1215 +20 10001283 . T . . END=10001287 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:73:28:0,73,790 +20 10001288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:58:29:0,58,802 +20 10001289 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:81:28:0,81,1215 +20 10001290 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:55:26:0,55,756 +20 10001291 . T . . END=10001294 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:84:29:0,84,1260 +20 10001295 . G . . END=10001297 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:30:0,90,873 +20 10001298 . T A, . . DP=105;ExcessHet=3.01;RAW_MQandDP=330093,105 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 ./.:0,30,0:30:90:918,90,0,918,90,918:0,0,16,14 +20 10001299 . C . . END=10001300 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:32:90:30:0,90,826 +20 10001301 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:89:35:0,89,999 +20 10001302 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:96:35:0,96,1440 +20 10001303 . A . . END=10001305 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:36:99:35:0,99,1485 +20 10001306 . T . . END=10001307 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:36:96:36:0,96,1440 +20 10001308 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:85:35:0,85,997 +20 10001309 . T . . END=10001313 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:33:96:33:0,96,1440 +20 10001314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:33:83:33:0,83,933 +20 10001315 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:91:34:0,91,1009 +20 10001316 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:81:34:0,81,992 +20 10001317 . A . . END=10001318 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:99:34:0,99,987 +20 10001319 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:96:34:0,96,1440 +20 10001320 . A . . END=10001334 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:99:34:0,99,998 +20 10001335 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:32:96:32:0,96,969 +20 10001336 . C . . END=10001358 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:37:99:34:0,99,943 +20 10001359 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:36:90:36:0,90,1026 +20 10001360 . T . . END=10001388 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:42:99:36:0,99,993 +20 10001389 . A . . END=10001392 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:43:93:42:0,93,1395 +20 10001393 . T . . END=10001402 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:72:43:0,72,1080 +20 10001403 . A . . END=10001407 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:60:42:0,60,900 +20 10001408 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:43:57:43:0,57,855 +20 10001409 . A . . END=10001410 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:51:44:0,51,765 +20 10001411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:45:44:0,45,675 +20 10001412 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:39:44:0,39,585 +20 10001413 . T . . END=10001415 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:36:43:0,36,540 +20 10001416 . A . . END=10001421 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:43:33:39:0,33,495 +20 10001422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:40:27:40:0,27,405 +20 10001423 . T . . END=10001425 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:41:21:40:0,21,315 +20 10001426 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:41:18:40:0,18,270 +20 10001427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:5:53:0,5,1899 ./.:41:18:40:0,18,270 +20 10001428 . T . . END=10001429 GT:DP:GQ:MIN_DP:PL ./.:54:99:53:0,120,1800 ./.:41:18:40:0,18,270 +20 10001430 . G . . END=10001431 GT:DP:GQ:MIN_DP:PL ./.:56:0:56:0,0,1743 ./.:41:18:40:0,18,270 +20 10001432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:56:0,120,1800 ./.:42:6:41:0,6,90 +20 10001433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:56:0,0,1779 ./.:42:6:41:0,6,90 +20 10001434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:56:0,120,1800 ./.:42:6:41:0,6,90 +20 10001435 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:0:55:0,0,1790 ./.:42:6:41:0,6,90 +20 10001436 . A AAGGCT, . . DP=94;ExcessHet=3.01;RAW_MQandDP=233155,94 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 ./.:0,36,0:36:99:1620,108,0,1620,108,1620:0,0,19,17 +20 10001437 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:42:0:42:0,0,0 +20 10001438 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:40:96:40:0,96,1440 +20 10001439 . G . . END=10001442 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:41:99:40:0,99,1485 +20 10001443 . C . . END=10001446 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:40:0:37:0,0,885 +20 10001447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:59:36:0,59,1053 +20 10001448 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:34:46:34:0,46,957 +20 10001449 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:35:99:35:0,99,1485 +20 10001450 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:45:36:0,45,1009 +20 10001451 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:99:36:0,102,1530 +20 10001452 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:97:36:0,97,1144 +20 10001453 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:37:88:37:0,88,1170 +20 10001454 . T . . END=10001466 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:38:99:36:0,99,1225 +20 10001467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:38:89:38:0,89,1159 +20 10001468 . A . . END=10001473 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:40:99:39:0,108,1620 +20 10001474 . C T, . . DP=112;ExcessHet=3.01;RAW_MQandDP=281015,112 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 ./.:0,39,0:39:99:1234,117,0,1234,117,1234:0,0,21,18 +20 10001475 . G . . END=10001482 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:39:99:38:0,111,1665 +20 10001483 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:40:87:40:0,87,1204 +20 10001484 . A . . END=10001499 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:99:40:0,100,1202 +20 10001500 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:44:98:44:0,98,1276 +20 10001501 . A . . END=10001508 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:99:42:0,114,1710 +20 10001509 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:93:42:0,93,1262 +20 10001510 . A . . END=10001529 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:36:99:35:0,99,1133 +20 10001530 . G . . END=10001533 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:35:93:35:0,93,1395 +20 10001534 . T . . END=10001541 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:84:33:0,84,1260 +20 10001542 . T . . END=10001543 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:75:32:0,75,1012 +20 10001544 . G . . END=10001545 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:81:31:0,81,1215 +20 10001546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:73:33:0,73,971 +20 10001547 . G . . END=10001557 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:84:29:0,84,1260 +20 10001558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:29:71:29:0,71,903 +20 10001559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:30:87:30:0,87,1305 +20 10001560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:93:32:0,93,1395 +20 10001561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:83:32:0,83,990 +20 10001562 . A . . END=10001563 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001564 . T . . END=10001573 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:82:30:0,82,943 +20 10001574 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:76:31:0,76,950 +20 10001575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:61:31:0,61,877 +20 10001576 . T . . END=10001577 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:83:31:0,83,989 +20 10001578 . A . . END=10001582 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:90:32:0,90,1350 +20 10001583 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:87:32:0,87,1305 +20 10001584 . G . . END=10001589 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:32:0,90,975 +20 10001590 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:80:33:0,80,966 +20 10001591 . T . . END=10001594 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:33:0,90,1350 +20 10001595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:82:34:0,82,1005 +20 10001596 . A . . END=10001598 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:32:0,90,1034 +20 10001599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:69:33:0,69,946 +20 10001600 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:87:32:0,87,1305 +20 10001601 . G . . END=10001609 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:90:33:0,90,1350 +20 10001610 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:87:34:0,87,1305 +20 10001611 . G . . END=10001616 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:35:90:33:0,90,1044 +20 10001617 . C A, . . BaseQRankSum=1.26;DP=136;ExcessHet=3.01;MQRankSum=1.37;RAW_MQandDP=358589,103;ReadPosRankSum=-2.800e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:52,51,0:103:99:.:1760,0,1781,1916,1935,3851:23,29,33,18 ./.:.:35:90:33:0,90,1044,90,1044,1044 +20 10001618 . T . . END=10001621 GT:DP:GQ:MIN_DP:PL ./.:100:99:94:0,120,1800 ./.:35:90:33:0,90,1044 +20 10001622 . T . . END=10001627 GT:DP:GQ:MIN_DP:PL ./.:100:99:94:0,120,1800 ./.:37:99:36:0,99,1485 +20 10001628 . G A, . . DP=133;ExcessHet=3.01;RAW_MQandDP=469348,133 GT:AD:DP:GQ:PL:SB ./.:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 ./.:0,37,0:37:99:1119,110,0,1119,110,1119:0,0,21,16 +20 10001629 . G . . END=10001638 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:99:35:0,99,1075 +20 10001639 . G . . END=10001641 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001642 . G . . END=10001649 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:36:99:35:0,99,1485 +20 10001650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:36:95:36:0,95,1015 +20 10001651 . T . . END=10001654 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:99:36:0,105,1575 +20 10001655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:89:37:0,89,1109 +20 10001656 . A . . END=10001660 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:99:37:0,100,1121 +20 10001661 . T C, . . DP=117;ExcessHet=3.01;RAW_MQandDP=405174,117 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 ./.:0,35,0:35:99:0|1:10001661_T_C:1553,105,0,1553,105,1553:0,0,14,21 +20 10001662 . T . . END=10001669 GT:DP:GQ:MIN_DP:PL ./.:82:99:81:0,120,1800 ./.:37:99:36:0,108,1088 +20 10001670 . T G, . . DP=118;ExcessHet=3.01;RAW_MQandDP=400497,118 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 ./.:0,36,0:36:99:0|1:10001661_T_C:1583,108,0,1583,108,1583:0,0,15,21 +20 10001671 . G . . END=10001708 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:41:99:38:0,103,1175 +20 10001709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:43:96:43:0,96,1289 +20 10001710 . C . . END=10001828 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:43:99:38:0,101,1174 +20 10001829 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:39:68:39:0,68,1136 +20 10001830 . C . . END=10001850 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:39:99:35:0,99,1485 +20 10001851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:96:35:0,96,1440 +20 10001852 . G . . END=10001883 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:37:99:34:0,99,1152 +20 10001884 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:97:38:0,97,1146 +20 10001885 . C . . END=10001900 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:99:35:0,99,1147 +20 10001901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:92:35:0,92,1086 +20 10001902 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:99:33:0,99,1008 +20 10001903 . C . . END=10001904 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001905 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:85:34:0,85,993 +20 10001906 . A . . END=10001907 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:91:35:0,91,1080 +20 10001908 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:86:34:0,86,993 +20 10001909 . A . . END=10001911 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:93:35:0,93,1395 +20 10001912 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:36:81:36:0,81,1043 +20 10001913 . A . . END=10001915 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:90:34:0,90,1350 +20 10001916 . G . . END=10001924 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:81:33:0,81,1215 +20 10001925 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:65:33:0,65,933 +20 10001926 . A . . END=10001928 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:78:31:0,78,1170 +20 10001929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:68:31:0,68,820 +20 10001930 . A . . END=10001931 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:74:30:0,74,825 +20 10001932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:84:31:0,84,1260 +20 10001933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:70:32:0,70,939 +20 10001934 . A . . END=10001936 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:30:0,90,937 +20 10001937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:62:30:0,62,889 +20 10001938 . G . . END=10001939 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:30:0,90,894 +20 10001940 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:82:31:0,82,910 +20 10001941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:93:32:0,93,1395 +20 10001942 . T . . END=10001943 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:84:32:0,84,957 +20 10001944 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:99:34:0,99,1485 +20 10001945 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:86:34:0,86,992 +20 10001946 . A . . END=10001947 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001948 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:88:33:0,88,994 +20 10001949 . A . . END=10001950 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001951 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:83:34:0,83,996 +20 10001952 . G . . END=10001956 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:90:33:0,90,1350 +20 10001957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:87:33:0,87,990 +20 10001958 . A . . END=10001959 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:90:32:0,90,1350 +20 10001960 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:77:32:0,77,960 +20 10001961 . G . . END=10001962 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001963 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:77:31:0,77,887 +20 10001964 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001965 . T . . END=10001981 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:81:29:0,81,908 +20 10001982 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:90:30:0,90,903 +20 10001983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:29:87:29:0,87,898 +20 10001984 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:90:30:0,90,938 +20 10001985 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:72:30:0,72,930 +20 10001986 . G . . END=10002008 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:81:28:0,81,876 +20 10002009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:78:32:0,78,951 +20 10002010 . T . . END=10002012 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:81:31:0,81,1215 +20 10002013 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:63:32:0,63,980 +20 10002014 . T . . END=10002016 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:87:30:0,87,1305 +20 10002017 . T . . END=10002018 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:32:0,90,1350 +20 10002019 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:85:32:0,85,990 +20 10002020 . T . . END=10002021 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:32:0,90,1350 +20 10002022 . A . . END=10002023 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:87:31:0,87,1305 +20 10002024 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:78:30:0,78,897 +20 10002025 . A . . END=10002027 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:84:30:0,84,1260 +20 10002028 . A . . END=10002030 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:90:32:0,90,1085 +20 10002031 . C . . END=10002042 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:99:33:0,99,1025 +20 10002043 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:96:32:0,96,1008 +20 10002044 . T . . END=10002048 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:36:99:35:0,102,1124 +20 10002049 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:37:92:37:0,92,1117 +20 10002050 . C . . END=10002057 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:99:36:0,108,1162 +20 10002058 . T G, . . BaseQRankSum=1.93;DP=111;ExcessHet=3.01;MQRankSum=3.07;RAW_MQandDP=379806,111;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL:SB ./.:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 ./.:0,36,0:36:99:1177,108,0,1177,108,1177:0,0,24,12 +20 10002059 . A . . END=10002062 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:38:0,111,1665 +20 10002063 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:96:38:0,96,1185 +20 10002064 . A . . END=10002068 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:38:0,103,1173 +20 10002069 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:37:98:37:0,98,1126 +20 10002070 . A . . END=10002072 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10002073 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:37:96:37:0,96,1127 +20 10002074 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10002075 . T . . END=10002077 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:96:37:0,96,1440 +20 10002078 . A . . END=10002080 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:36:0,99,1485 +20 10002081 . C . . END=10002085 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:36:96:33:0,96,1440 +20 10002086 . G . . END=10002098 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:36:99:35:0,99,1485 +20 10002099 . C T, . . BaseQRankSum=-2.820e-01;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=335529,101;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL:SB ./.:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 ./.:22,14,0:36:99:310,0,563,376,605,982:14,8,10,4 +20 10002100 . T . . END=10002102 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002103 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:32:96:32:0,96,1012 +20 10002104 . T . . END=10002116 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:35:99:33:0,99,1007 +20 10002117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:37:98:37:0,98,1084 +20 10002118 . A . . END=10002129 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:39:99:36:0,101,1104 +20 10002130 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:38:97:38:0,97,1110 +20 10002131 . G . . END=10002137 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:37:99:37:0,100,1125 +20 10002138 . C G, . . DP=90;ExcessHet=3.01;RAW_MQandDP=301663,90 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 ./.:0,37,0:37:99:0|1:10002138_C_G:1642,111,0,1642,111,1642:0,0,27,10 +20 10002139 . A . . END=10002141 GT:DP:GQ:MIN_DP:PL ./.:54:99:52:0,120,1800 ./.:38:99:38:0,102,1530 +20 10002142 . G C, . . DP=89;ExcessHet=3.01;RAW_MQandDP=298063,89 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 ./.:0,37,0:37:99:0|1:10002138_C_G:1673,114,0,1673,114,1673:0,0,27,10 +20 10002143 . T . . END=10002165 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:99:37:0,102,1530 +20 10002166 . G T, . . BaseQRankSum=-1.674e+00;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.777 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:48:99:42:0,105,1575,105,1575,1575 ./.:38,1,0:39:99:.:0,107,1136,114,1138,1145:25,13,1,0 +20 10002167 . G . . END=10002169 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:99:38:0,102,1530 +20 10002170 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:37:96:37:0,96,1086 +20 10002171 . G . . END=10002192 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:99:36:0,102,1146 +20 10002193 . C . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:98:39:0,98,1112 +20 10002194 . C . . END=10002197 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:99:37:0,99,1485 +20 10002198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:95:38:0,95,1127 +20 10002199 . A . . END=10002200 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:37:99:37:0,99,1076 +20 10002201 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:36:97:36:0,97,1078 +20 10002202 . G . . END=10002203 GT:DP:GQ:MIN_DP:PL ./.:49:96:47:0,96,1440 ./.:36:99:33:0,99,972 +20 10002204 . G . . END=10002212 GT:DP:GQ:MIN_DP:PL ./.:46:99:45:0,99,1485 ./.:36:99:33:0,99,972 +20 10002213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:65:45:0,65,1504 ./.:36:99:33:0,99,972 +20 10002214 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:37:94:37:0,94,1129 +20 10002215 . A . . END=10002220 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:38:99:37:0,108,1620 +20 10002221 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:93:39:0,93,1181 +20 10002222 . A . . END=10002237 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:99:38:0,101,1148 +20 10002238 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:89:39:0,89,1167 +20 10002239 . C . . END=10002404 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:99:37:0,102,1122 +20 10002405 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:92:42:0,92,1151 +20 10002406 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:99:44:0,120,1800 +20 10002407 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:82:44:0,82,1208 +20 10002408 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:91:42:0,91,1188 +20 10002409 . G . . END=10002414 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:43:99:42:0,115,1316 +20 10002415 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:55:40:0,55,1048 +20 10002416 . T . . END=10002418 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,100,1291 +20 10002419 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:72:41:0,72,1077 +20 10002420 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,108,1620 +20 10002421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:79:41:0,79,1122 +20 10002422 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:99:39:0,105,1575 +20 10002423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:93:41:0,93,1245 +20 10002424 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:38:82:38:0,82,1041 +20 10002425 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,105,1575 +20 10002426 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:67:39:0,67,1027 +20 10002427 . T . . END=10002429 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:99:40:0,99,1485 +20 10002430 . C . . END=10002433 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:90:39:0,90,1350 +20 10002434 . C . . END=10002439 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:81:36:0,81,1215 +20 10002440 . C . . END=10002442 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:36:72:36:0,72,1080 +20 10002443 . T . . END=10002445 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:60:35:0,60,900 +20 10002446 . T . . END=10002448 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:51:34:0,51,765 +20 10002449 . T . . END=10002450 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:34:48:32:0,48,720 +20 10002451 . T . . END=10002453 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:42:33:0,42,630 +20 10002454 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:36:17:36:0,17,856 +20 10002455 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:93:50:0,93,1395 ./.:36:0:36:0,0,797 +20 10002456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:78:52:0,78,1170 ./.:37:30:37:0,30,954 +20 10002457 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:0:52:0,0,1572 ./.:36:0:36:0,0,530 +20 10002458 . G GTT,GTTT,GT,GTTTTT, . . DP=73;ExcessHet=3.01;RAW_MQandDP=221015,73 GT:AD:DP:GQ:PL:SB ./.:0,0,6,6,4,0:16:9:2172,876,730,249,168,82,654,512,0,493,353,254,9,33,214,876,730,168,512,254,730:0,0,12,4 ./.:0,8,4,0,0,0:12:78:1157,165,78,207,0,120,781,162,204,698,781,162,204,698,698,781,162,204,698,698,698:0,0,7,5 +20 10002459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:58:78:58:0,78,1170 ./.:38:0:38:0,0,73 +20 10002460 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:87:60:0,87,1305 ./.:38:66:38:0,66,990 +20 10002461 . T . . END=10002467 GT:DP:GQ:MIN_DP:PL ./.:62:90:60:0,90,1350 ./.:38:66:38:0,66,990 +20 10002468 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:64:0,99,1485 ./.:38:66:38:0,66,990 +20 10002469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:81:62:0,81,1215 ./.:38:66:38:0,66,990 +20 10002470 . C T, . . DP=91;ExcessHet=3.01;RAW_MQandDP=252226,91 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 ./.:0,30,0:30:93:1256,93,0,1256,93,1256:0,0,17,13 +20 10002471 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:84:63:0,84,1260 ./.:40:72:39:0,72,1080 +20 10002472 . T . . END=10002473 GT:DP:GQ:MIN_DP:PL ./.:63:90:63:0,90,1350 ./.:40:72:39:0,72,1080 +20 10002474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:90:63:0,90,1350 ./.:35:69:33:0,69,1035 +20 10002475 . T . . END=10002477 GT:DP:GQ:MIN_DP:PL ./.:70:99:66:0,102,1530 ./.:35:69:33:0,69,1035 +20 10002478 . A . . END=10002479 GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:30:0:29:0,0,534 +20 10002480 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:29:52:29:0,52,758 +20 10002481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:29:70:28:0,70,796 +20 10002482 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:3:46:0,3,1461 ./.:29:70:28:0,70,796 +20 10002483 . A . . . GT:DP:GQ:MIN_DP:PL ./.:45:99:45:0,108,1620 ./.:27:69:27:0,69,724 +20 10002484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:91:42:0,91,1538 ./.:29:78:28:0,78,1170 +20 10002485 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:29:78:28:0,78,1170 +20 10002486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:66:28:0,66,783 +20 10002487 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:27:72:27:0,72,1080 +20 10002488 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:27:44:27:0,44,693 +20 10002489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:64:28:0,64,780 +20 10002490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:56:28:0,56,822 +20 10002491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:72:28:0,72,1080 +20 10002492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:55:28:0,55,706 +20 10002493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:79:36:0,79,1251 ./.:26:25:26:0,25,644 +20 10002494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:28:37:28:0,37,762 +20 10002495 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:28:50:28:0,50,810 +20 10002496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:38:25:0,38,648 +20 10002497 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:63:27:0,63,945 +20 10002498 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:43:27:0,43,723 +20 10002499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:47:27:0,47,796 +20 10002500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:26:63:26:0,63,945 +20 10002501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:26:34:26:0,34,727 +20 10002502 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:24:56:24:0,56,702 +20 10002503 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:26:25:0,26,625 +20 10002504 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:41:25:0,41,702 +20 10002505 . A . . END=10002506 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:23:66:22:0,66,643 +20 10002507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:22:50:22:0,50,625 +20 10002508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:20:59:20:0,59,596 +20 10002509 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:92:39:0,92,1455 ./.:22:66:22:0,66,672 +20 10002510 . G . . END=10002511 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,105,1575 ./.:22:66:22:0,66,672 +20 10002512 . T . . END=10002513 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,105,1575 ./.:24:71:24:0,71,631 +20 10002514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:38:72:38:0,72,1207 ./.:24:66:22:0,66,642 +20 10002515 . T . . END=10002517 GT:DP:GQ:MIN_DP:PL ./.:39:99:38:0,105,1575 ./.:24:66:22:0,66,642 +20 10002518 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:85:37:0,85,1338 ./.:24:66:22:0,66,642 +20 10002519 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:23:53:23:0,53,685 +20 10002520 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:69:24:0,69,1035 +20 10002521 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:72:24:0,72,738 +20 10002522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:58:25:0,58,728 +20 10002523 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:26:56:26:0,56,766 +20 10002524 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:42:25:0,42,688 +20 10002525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:50:24:0,50,650 +20 10002526 . C . . END=10002528 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:74:25:0,74,739 +20 10002529 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:26:60:26:0,60,742 +20 10002530 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:81:27:0,81,830 +20 10002531 . A . . END=10002533 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:75:27:0,75,1125 +20 10002534 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:55:25:0,55,703 +20 10002535 . C . . END=10002541 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:75:25:0,75,753 +20 10002542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:27:75:25:0,75,753 +20 10002543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:25:56:25:0,56,640 +20 10002544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:25:72:24:0,72,742 +20 10002545 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:84:37:0,84,1362 ./.:25:72:24:0,72,742 +20 10002546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:23:69:23:0,69,708 +20 10002547 . T . . END=10002548 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:25:0,72,1080 +20 10002549 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:57:25:0,57,754 +20 10002550 . G . . END=10002551 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:25:0,72,1080 +20 10002552 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:37:25:0,37,679 +20 10002553 . T . . END=10002554 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:24:0,72,753 +20 10002555 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:87:34:0,87,1207 ./.:23:58:23:0,58,663 +20 10002556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:24:54:24:0,54,704 +20 10002557 . A . . END=10002560 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:26:72:24:0,72,688 +20 10002561 . G . . END=10002562 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:28:81:27:0,81,792 +20 10002563 . G . . END=10002564 GT:DP:GQ:MIN_DP:PL ./.:35:84:34:0,84,1260 ./.:27:78:27:0,78,1170 +20 10002565 . G . . END=10002566 GT:DP:GQ:MIN_DP:PL ./.:34:72:33:0,72,1080 ./.:27:78:27:0,78,1170 +20 10002567 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:72:33:0,72,1080 ./.:30:84:30:0,84,1260 +20 10002568 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:30:68:30:0,68,866 +20 10002569 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:26:77:26:0,77,738 +20 10002570 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:30:84:30:0,84,1260 +20 10002571 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:26:78:26:0,78,753 +20 10002572 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:28:84:28:0,84,735 +20 10002573 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:78:35:0,78,1170 ./.:26:60:26:0,60,650 +20 10002574 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:81:37:0,81,1215 ./.:25:56:25:0,56,648 +20 10002575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:81:37:0,81,1215 ./.:26:62:26:0,62,727 +20 10002576 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:30:87:30:0,87,1305 +20 10002577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:31:90:31:0,90,1350 +20 10002578 . G . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:29:87:29:0,87,871 +20 10002579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:31:90:30:0,90,874 +20 10002580 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:31:90:30:0,90,874 +20 10002581 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:33:73:33:0,73,985 +20 10002582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:33:98:33:0,98,929 +20 10002583 . A . . END=10002586 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10002587 . T . . END=10002601 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:35:90:33:0,90,994 +20 10002602 . T . . END=10002606 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:37:99:37:0,102,1530 +20 10002607 . C . . END=10002616 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:37:90:35:0,90,1055 +20 10002617 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:39:99:39:0,99,1485 +20 10002618 . A . . END=10002624 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:35:93:33:0,93,1395 +20 10002625 . G T, . . DP=96;ExcessHet=3.01;RAW_MQandDP=338379,96 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 ./.:0,32,0:32:96:1029,96,0,1029,96,1029:0,0,17,15 +20 10002626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:85:34:0,85,985 +20 10002627 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002628 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:83:34:0,83,1002 +20 10002629 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:81:34:0,81,1049 +20 10002631 . A . . END=10002633 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:96:33:0,96,1440 +20 10002634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:89:35:0,89,1035 +20 10002635 . A . . END=10002644 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:33:0,99,988 +20 10002645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:92:36:0,92,1109 +20 10002646 . T . . END=10002647 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:99:35:0,102,1530 +20 10002648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:92:35:0,92,1122 +20 10002649 . A . . END=10002663 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:36:0,102,1023 +20 10002664 . G . . END=10002665 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:86:38:0,86,1119 +20 10002666 . G . . END=10002667 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,104,1150 +20 10002668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:81:39:0,81,1136 +20 10002669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,105,1190 +20 10002670 . C . . END=10002671 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:86:40:0,86,1170 +20 10002672 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,100,1142 +20 10002673 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:66:39:0,66,1168 +20 10002674 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,111,1665 +20 10002675 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:75:39:0,75,1092 +20 10002676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,106,1175 +20 10002677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:87:40:0,87,1196 +20 10002678 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:94:40:0,94,1184 +20 10002679 . T . . END=10002681 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,111,1665 +20 10002682 . A . . END=10002683 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:89:39:0,89,1189 +20 10002684 . C . . END=10002685 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:37:0,108,1620 +20 10002686 . C . . END=10002687 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:80:37:0,80,1093 +20 10002688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:38:0,108,1620 +20 10002689 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:85:39:0,85,1171 +20 10002690 . A . . END=10002691 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:99:39:0,108,1271 +20 10002692 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:74:41:0,74,1119 +20 10002693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:99:40:0,111,1665 +20 10002694 . A . . END=10002695 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:92:41:0,92,1125 +20 10002696 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:87:39:0,87,1160 +20 10002697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:96:40:0,96,1440 +20 10002698 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:85:41:0,85,1227 +20 10002699 . C . . END=10002700 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:43:99:42:0,102,1530 +20 10002701 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:43:88:43:0,88,1263 +20 10002702 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:90:44:0,90,1358 +20 10002703 . A . . END=10002716 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:99:43:0,100,1347 +20 10002717 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:42:81:42:0,81,1158 +20 10002718 . A . . END=10002906 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:99:38:0,100,1183 +20 10002907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:92:40:0,92,1196 +20 10002908 . C . . END=10002923 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:36:0,102,1530 +20 10002924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:85:37:0,85,1118 +20 10002925 . A . . END=10002933 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:99:34:0,99,1485 +20 10002934 . C . . END=10002935 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10002936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002937 . A . . END=10002939 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002940 . C . . END=10002944 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002945 . C . . END=10002955 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:90:34:0,90,1350 +20 10002956 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:80:35:0,80,1102 +20 10002957 . G . . END=10002958 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10002959 . T . . END=10002962 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:87:31:0,87,1305 +20 10002963 . A . . END=10002967 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10002968 . T . . END=10002980 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:99:36:0,99,1196 +20 10002981 . G . . END=10002982 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:90:35:0,90,1350 +20 10002983 . T . . END=10002984 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:87:35:0,87,1305 +20 10002985 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:90:37:0,90,1350 +20 10002986 . G . . END=10002992 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:81:32:0,81,1215 +20 10002993 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:75:31:0,75,971 +20 10002994 . T . . END=10002998 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:32:84:31:0,84,1260 +20 10002999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:62:31:0,62,908 +20 10003000 . A . . END=10003003 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:81:30:0,81,1215 +20 10003004 . C . . END=10003009 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:72:28:0,72,1080 +20 10003010 . G . . END=10003012 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:66:27:0,66,990 +20 10003013 . A . . END=10003015 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:72:28:0,72,1080 +20 10003016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:50:28:0,50,809 +20 10003017 . C . . END=10003019 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:27:75:27:0,75,1125 +20 10003020 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:81:28:0,81,1215 +20 10003021 . C T, . . DP=87;ExcessHet=3.01;RAW_MQandDP=305979,87 GT:AD:DP:GQ:PL:SB ./.:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 ./.:0,26,0:26:78:828,78,0,828,78,828:0,0,14,12 +20 10003022 . G . . END=10003024 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:28:84:28:0,84,853 +20 10003025 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:28:66:28:0,66,805 +20 10003026 . T . . END=10003030 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:29:87:29:0,87,889 +20 10003031 . T . . END=10003034 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:30:90:30:0,90,921 +20 10003035 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:29:70:29:0,70,845 +20 10003036 . T . . END=10003050 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:33:0,99,970 +20 10003051 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:88:35:0,88,981 +20 10003052 . C . . END=10003055 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:35:0,105,1040 +20 10003056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:85:36:0,85,1083 +20 10003057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:92:36:0,92,1068 +20 10003058 . A . . END=10003063 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:99:35:0,99,1485 +20 10003064 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:79:36:0,79,1030 +20 10003065 . G . . END=10003071 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:91:35:0,91,1087 +20 10003072 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:34:70:34:0,70,1013 +20 10003073 . A . . END=10003076 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:34:0,99,1485 +20 10003077 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:34:79:34:0,79,1002 +20 10003078 . G . . END=10003083 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:93:31:0,93,958 +20 10003084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:73:32:0,73,928 +20 10003085 . G . . END=10003087 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:90:32:0,90,1350 +20 10003088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:80:32:0,80,965 +20 10003089 . G . . END=10003099 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:31:90:30:0,90,948 +20 10003100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:88:33:0,88,986 +20 10003101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:99:33:0,99,1002 +20 10003102 . T . . END=10003107 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:90:32:0,90,1350 +20 10003108 . C . . END=10003110 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:81:33:0,81,1215 +20 10003111 . C . . END=10003113 GT:DP:GQ:MIN_DP:PL ./.:39:93:39:0,93,1395 ./.:36:81:33:0,81,1215 +20 10003114 . C . . END=10003115 GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:36:81:33:0,81,1215 +20 10003116 . A . . . GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:34:78:34:0,78,1170 +20 10003117 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:35:84:35:0,84,1260 +20 10003118 . C . . END=10003119 GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:32:75:28:0,75,878 +20 10003120 . G . . END=10003121 GT:DP:GQ:MIN_DP:PL ./.:46:99:46:0,114,1710 ./.:32:75:28:0,75,878 +20 10003122 . C . . . GT:DP:GQ:MIN_DP:PL ./.:47:37:47:0,37,1427 ./.:32:75:28:0,75,878 +20 10003123 . A . . END=10003128 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:75:28:0,75,878 +20 10003129 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:26:53:26:0,53,735 +20 10003130 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:75:28:0,75,1125 +20 10003131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:56:30:0,56,804 +20 10003133 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003134 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10003135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:26:53:26:0,53,727 +20 10003136 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:49:28:0,49,776 +20 10003137 . A . . END=10003142 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:78:27:0,78,1170 +20 10003143 . A . . END=10003145 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:84:28:0,84,848 +20 10003146 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:90:30:0,90,906 +20 10003147 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:87:29:0,87,876 +20 10003148 . T . . END=10003149 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:93:32:0,93,987 +20 10003150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:81:32:0,81,953 +20 10003151 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10003152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:83:33:0,83,978 +20 10003153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:87:35:0,87,1041 +20 10003155 . T . . END=10003158 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:33:0,99,998 +20 10003159 . G . . END=10003160 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:87:34:0,87,1009 +20 10003161 . C . . END=10003175 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10003176 . A . . END=10003186 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:81:33:0,81,1215 +20 10003187 . C . . END=10003190 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:93:33:0,93,1395 +20 10003191 . T . . END=10003195 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:99:33:0,99,1006 +20 10003196 . G . . END=10003199 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:93:32:0,93,1395 +20 10003200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:86:33:0,86,931 +20 10003201 . C . . END=10003204 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:93:33:0,93,1395 +20 10003205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:83:34:0,83,1006 +20 10003206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003207 . C . . END=10003210 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:96:32:0,96,912 +20 10003211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:76:34:0,76,989 +20 10003213 . A . . END=10003214 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003215 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:94:35:0,94,1058 +20 10003216 . T . . END=10003217 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:35:0,102,1530 +20 10003218 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:94:35:0,94,1042 +20 10003219 . A . . END=10003230 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:33:0,99,1001 +20 10003231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:58:33:0,58,921 +20 10003232 . T . . END=10003254 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:38:99:35:0,105,1100 +20 10003255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:38:95:38:0,95,1140 +20 10003256 . C . . END=10003267 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:37:99:36:0,99,1485 +20 10003268 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:85:35:0,85,1071 +20 10003269 . A . . END=10003276 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:34:0,99,1094 +20 10003277 . T . . END=10003281 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:93:33:0,93,1052 +20 10003282 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003283 . A . . END=10003286 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:90:34:0,90,1350 +20 10003287 . A . . END=10003292 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:81:30:0,81,1215 +20 10003293 . C . . END=10003297 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:72:29:0,72,1080 +20 10003298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:54:29:0,54,841 +20 10003299 . T . . END=10003305 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:72:27:0,72,1080 +20 10003306 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003307 . A . . END=10003309 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:75:29:0,75,1125 +20 10003310 . A . . END=10003316 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10003317 . T . . END=10003321 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:90:31:0,90,1001 +20 10003322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:85:32:0,85,942 +20 10003323 . C . . END=10003327 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003328 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:78:32:0,78,950 +20 10003329 . T . . END=10003341 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10003342 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:76:29:0,76,907 +20 10003343 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:64:29:0,64,824 +20 10003344 . C . . END=10003347 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:87:29:0,87,914 +20 10003348 . T . . END=10003350 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:90:30:0,90,953 +20 10003351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:73:31:0,73,876 +20 10003352 . C . . END=10003354 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003355 . A . . END=10003357 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10003358 . A C, . . BaseQRankSum=4.000e-03;DP=119;ExcessHet=3.01;MQRankSum=1.01;RAW_MQandDP=318169,89;ReadPosRankSum=-1.355e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,44,0:89:99:.:1483,0,1477,1618,1609,3227:31,14,29,15 ./.:.:31:87:30:0,87,1305,87,1305,1305 +20 10003359 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:30:0,87,1305 +20 10003360 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003361 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:85:32:0,85,976 +20 10003362 . G . . END=10003364 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,954 +20 10003365 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:82:31:0,82,933 +20 10003366 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003367 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:74:31:0,74,892 +20 10003368 . A . . END=10003369 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003370 . A . . END=10003376 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:30:0,90,945 +20 10003377 . A . . END=10003378 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:73:30:0,73,881 +20 10003380 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:87:30:0,87,1305 +20 10003381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:79:30:0,79,942 +20 10003382 . T . . END=10003389 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:80:30:0,80,908 +20 10003390 . G . . END=10003391 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:90:32:0,90,1350 +20 10003392 . C . . END=10003394 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:64:31:0,64,898 +20 10003396 . A . . END=10003401 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:82:29:0,82,909 +20 10003402 . C . . END=10003407 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,947 +20 10003408 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:82:33:0,82,948 +20 10003409 . A . . END=10003418 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:30:0,90,928 +20 10003419 . G . . END=10003420 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:87:30:0,87,882 +20 10003421 . C . . END=10003423 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003424 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:81:31:0,81,951 +20 10003425 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:69:29:0,69,867 +20 10003426 . A . . END=10003435 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:28:0,81,1215 +20 10003436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:60:29:0,60,869 +20 10003437 . C . . END=10003442 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:72:27:0,72,889 +20 10003443 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:67:30:0,67,906 +20 10003444 . C . . END=10003445 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:72:29:0,72,1080 +20 10003446 . G T, . . BaseQRankSum=-8.520e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=104400,29;ReadPosRankSum=-1.061e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:50:0,120,1800,120,1800,1800 ./.:16,11,0:27:99:.:235,0,418,283,451,735:7,9,4,7 +20 10003447 . C . . END=10003449 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:72:28:0,72,1080 +20 10003450 . C . . END=10003457 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:26:62:24:0,62,733 +20 10003458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:57:25:0,57,720 +20 10003459 . C . . END=10003482 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:23:60:21:0,60,596 +20 10003483 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:72:25:0,72,1080 +20 10003484 . C . . END=10003491 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:24:63:23:0,63,709 +20 10003492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:24:55:24:0,55,710 +20 10003493 . T . . END=10003497 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:64:24:0,64,720 +20 10003498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:72:25:0,72,1080 +20 10003499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:69:25:0,69,1035 +20 10003500 . C . . END=10003507 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:27:75:26:0,75,822 +20 10003508 . G . . END=10003525 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:28:0,81,871 +20 10003526 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:65:29:0,65,827 +20 10003527 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:70:29:0,70,821 +20 10003528 . T . . END=10003538 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:29:0,81,1215 +20 10003539 . C . . END=10003540 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:31:0,90,1350 +20 10003541 . T . . END=10003542 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003543 . C . . END=10003547 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:87:33:0,87,1305 +20 10003549 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:90:34:0,90,1350 +20 10003550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:71:33:0,71,951 +20 10003551 . T . . END=10003552 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:68:32:0,68,937 +20 10003554 . A . . END=10003563 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:84:31:0,84,878 +20 10003564 . C . . END=10003566 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,902 +20 10003567 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:75:31:0,75,904 +20 10003568 . C . . END=10003570 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003571 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:76:33:0,76,977 +20 10003572 . T . . END=10003574 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:96:32:0,96,995 +20 10003575 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:85:32:0,85,945 +20 10003576 . C . . END=10003578 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:96:32:0,96,975 +20 10003579 . A . . END=10003584 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:99:33:0,99,1023 +20 10003585 . C . . END=10003586 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:96:33:0,96,1440 +20 10003587 . A . . END=10003588 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003589 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10003590 . T . . END=10003602 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:35:0,99,1485 +20 10003603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:85:35:0,85,989 +20 10003604 . T . . END=10003619 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:35:0,99,1027 +20 10003620 . A . . END=10003621 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:96:35:0,96,1440 +20 10003622 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:87:35:0,87,984 +20 10003623 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:93:35:0,93,1395 +20 10003624 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:81:35:0,81,994 +20 10003625 . C . . END=10003629 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:93:36:0,93,1017 +20 10003630 . A . . END=10003632 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:80:34:0,80,980 +20 10003634 . C . . END=10003635 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003636 . A . . END=10003639 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:96:34:0,96,1440 +20 10003640 . A . . END=10003641 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:84:34:0,84,1260 +20 10003642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:90:36:0,90,1350 +20 10003643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:88:35:0,88,1003 +20 10003644 . C . . END=10003649 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:90:36:0,90,1350 +20 10003650 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003651 . T C, . . DP=123;ExcessHet=3.01;RAW_MQandDP=433876,123 GT:AD:DP:GQ:PL:SB ./.:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 ./.:0,30,0:30:90:931,90,0,931,90,931:0,0,17,13 +20 10003652 . C . . END=10003660 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:84:29:0,84,850 +20 10003661 . T . . END=10003665 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:31:90:30:0,90,930 +20 10003666 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003667 . T . . END=10003668 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003669 . A . . END=10003672 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:87:32:0,87,994 +20 10003673 . T . . END=10003676 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:90:31:0,90,1350 +20 10003677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:62:32:0,62,904 +20 10003678 . C . . END=10003684 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:30:82:30:0,82,956 +20 10003685 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003686 . C . . END=10003687 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:87:33:0,87,1305 +20 10003688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003689 . T . . END=10003691 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:84:33:0,84,936 +20 10003692 . A G, . . DP=98;ExcessHet=3.01;RAW_MQandDP=348338,98 GT:AD:DP:GQ:PL:SB ./.:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 ./.:0,30,0:30:90:909,90,0,909,90,909:0,0,17,13 +20 10003693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:83:34:0,83,1029 +20 10003694 . T . . END=10003696 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:90:31:0,90,1350 +20 10003697 . T . . END=10003698 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:32:87:32:0,87,1305 +20 10003699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:32:90:32:0,90,1350 +20 10003700 . A . . END=10003701 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:30:87:29:0,87,959 +20 10003702 . T . . END=10003704 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:90:33:0,90,1350 +20 10003705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:87:33:0,87,1305 +20 10003706 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:69:34:0,69,1030 +20 10003707 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:85:34:0,85,1037 +20 10003708 . A . . END=10003730 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:90:31:0,90,1350 +20 10003731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:99:34:0,99,1485 +20 10003732 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:96:33:0,96,1440 +20 10003733 . T . . END=10003831 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:44:99:34:0,99,1201 +20 10003832 . G A, . . DP=107;ExcessHet=3.01;RAW_MQandDP=363036,107 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 ./.:0,41,0:41:99:1271,123,0,1271,123,1271:0,0,19,22 +20 10003833 . T . . END=10003911 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:47:99:41:0,111,1411 +20 10003912 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:96:43:0,96,1254 +20 10003913 . A . . END=10003945 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:38:0,104,1194 +20 10003946 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:97:40:0,97,1211 +20 10003947 . A . . END=10003955 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:39:0,106,1253 +20 10003956 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:91:40:0,91,1153 +20 10003957 . T . . END=10003971 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:99:39:0,104,1184 +20 10003972 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:91:43:0,91,1237 +20 10003973 . G . . END=10003984 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:41:0,104,1220 +20 10003985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:97:43:0,97,1279 +20 10003986 . A . . END=10003987 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:42:0,108,1620 +20 10003988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:93:41:0,93,1169 +20 10003989 . A . . END=10004004 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:99:39:0,102,1189 +20 10004005 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:38:98:38:0,98,1093 +20 10004006 . A . . END=10004023 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:38:0,100,1199 +20 10004024 . C . . END=10004026 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:38:93:37:0,93,1395 +20 10004027 . T . . END=10004028 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:39:0,99,1485 +20 10004029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:96:40:0,96,1440 +20 10004030 . T . . END=10004038 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:39:99:37:0,102,1530 +20 10004039 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:36:90:36:0,90,1115 +20 10004040 . G . . END=10004093 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:35:0,102,976 +20 10004094 . A C, . . DP=100;ExcessHet=3.01;RAW_MQandDP=316692,100 GT:AD:DP:GQ:PL:SB ./.:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 ./.:0,47,0:47:99:1455,140,0,1455,140,1455:0,0,25,22 +20 10004095 . C . . END=10004145 GT:DP:GQ:MIN_DP:PL ./.:51:99:45:0,109,1596 ./.:46:99:40:0,101,1112 +20 10004146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:45:0,109,1596 ./.:42:98:42:0,98,1111 +20 10004147 . A G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=283262,87 GT:AD:DP:GQ:PL:SB ./.:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 ./.:0,35,0:35:99:975,103,0,975,103,975:0,0,16,19 +20 10004148 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:91:42:0,91,1201 +20 10004149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:77:42:0,77,1076 +20 10004150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:83:41:0,83,1062 +20 10004151 . G . . END=10004155 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:99:37:0,111,1003 +20 10004156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:43:71:43:0,71,1172 +20 10004157 . G . . END=10004159 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:43:99:42:0,109,1236 +20 10004160 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:76:41:0,76,1083 +20 10004161 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:99:42:0,120,1800 +20 10004162 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:83:42:0,83,1169 +20 10004163 . A . . END=10004164 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:40:99:38:0,114,1141 +20 10004165 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:38:82:38:0,82,1079 +20 10004166 . G . . END=10004169 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:99:40:0,120,1237 +20 10004170 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:39:98:39:0,98,1053 +20 10004171 . G . . END=10004172 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:99:40:0,114,1710 +20 10004173 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:84:42:0,84,1144 +20 10004174 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:99:42:0,114,1710 +20 10004175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:96:42:0,96,1189 +20 10004176 . C . . END=10004188 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:99:36:0,108,1052 +20 10004189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:39:78:39:0,78,1063 +20 10004190 . C . . END=10004192 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:40:99:36:0,102,1152 +20 10004193 . G T, . . BaseQRankSum=-5.040e-01;DP=88;ExcessHet=3.01;MQRankSum=3.42;RAW_MQandDP=182869,52;ReadPosRankSum=1.51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:23,29,0:52:99:.:947,0,775,1016,860,1876:12,11,12,17 ./.:.:40:99:36:0,102,1152,102,1152,1152 +20 10004194 . C . . END=10004195 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:40:99:36:0,102,1152 +20 10004196 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:36:84:36:0,84,985 +20 10004197 . G . . END=10004199 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:96:37:0,96,1440 +20 10004200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:39:84:39:0,84,977 +20 10004201 . G . . END=10004202 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:39:93:38:0,93,1395 +20 10004203 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:64:37:0,64,935 +20 10004204 . A . . END=10004206 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:90:38:0,90,1350 +20 10004207 . G . . END=10004209 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:81:35:0,81,1215 +20 10004210 . A . . END=10004211 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:72:37:0,72,1080 +20 10004212 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:66:37:0,66,990 +20 10004213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:57:38:0,57,855 +20 10004214 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:54:38:0,54,810 +20 10004215 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:57:38:0,57,855 +20 10004216 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:54:38:0,54,810 +20 10004217 . G . . END=10004218 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:51:36:0,51,765 +20 10004219 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:34:48:34:0,48,720 +20 10004220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:36:45:36:0,45,675 +20 10004221 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:36:51:36:0,51,765 +20 10004222 . C CA, . . BaseQRankSum=0.335;DP=92;ExcessHet=3.01;MQRankSum=-2.042e+00;RAW_MQandDP=194729,54;ReadPosRankSum=1.27 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:31,8,0:39:50:.:50,0,923,153,952,1105:18,13,4,4 ./.:.:38:0:38:0,0,689,0,689,689 +20 10004223 . A AG, . . BaseQRankSum=0.803;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=1.89;RAW_MQandDP=308085,90;ReadPosRankSum=1.09 GT:AD:DP:GQ:PL:SB ./.:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 ./.:13,8,0:21:99:125,0,211,162,235,398:5,8,5,3 +20 10004224 . A G, . . BaseQRankSum=-5.440e-01;ClippingRankSum=0.00;DP=94;ExcessHet=3.01;MQRankSum=0.069;RAW_MQandDP=97316,28;ReadPosRankSum=0.459 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:0:66:0,0,1403,0,1403,1403 ./.:11,10,0:21:99:.:151,0,199,184,228,412:5,6,5,5 +20 10004225 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:40:96:40:0,96,1440 +20 10004226 . A . . END=10004240 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:43:99:41:0,99,1485 +20 10004241 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:0:66:0,0,1965 ./.:42:90:42:0,90,1174 +20 10004242 . A . . END=10004243 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:42:90:42:0,90,1174 +20 10004244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:72:41:0,72,1140 +20 10004245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:42:92:42:0,92,1292 +20 10004246 . A . . END=10004252 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:37:0,99,1485 +20 10004253 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:36:92:36:0,92,1082 +20 10004254 . T . . END=10004258 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:38:0,111,1168 +20 10004259 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:85:40:0,85,1145 +20 10004260 . T . . END=10004271 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:43:99:40:0,115,1234 +20 10004272 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:83:46:0,83,1301 +20 10004273 . T . . END=10004350 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:51:99:44:0,100,1310 +20 10004351 . C G, . . DP=125;ExcessHet=3.01;RAW_MQandDP=441987,125 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 ./.:0,53,0:53:99:1521,157,0,1521,157,1521:0,0,30,23 +20 10004352 . A . . END=10004388 GT:DP:GQ:MIN_DP:PL ./.:65:99:62:0,120,1800 ./.:58:99:53:0,112,1582 +20 10004389 . T G, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=383170,113;ReadPosRankSum=1.41 GT:AD:DP:GQ:PL:SB ./.:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 ./.:1,49,0:50:99:1357,138,0,1360,144,1367:1,0,24,25 +20 10004390 . G . . END=10004434 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:49:99:46:0,107,1370 +20 10004435 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:88:46:0,88,1373 +20 10004436 . T . . END=10004446 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:47:99:46:0,106,1414 +20 10004447 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:93:46:0,93,1356 +20 10004448 . A . . END=10004454 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:44:99:43:0,99,1349 +20 10004455 . A . . END=10004460 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:43:90:41:0,90,1078 +20 10004461 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:99:41:0,105,1575 +20 10004462 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:84:39:0,84,1207 +20 10004463 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:40:0,105,1575 +20 10004464 . G . . END=10004465 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:82:39:0,82,1135 +20 10004466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:39:0,105,1575 +20 10004467 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:77:40:0,77,1187 +20 10004468 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:66:39:0,66,1159 +20 10004469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:85:39:0,85,1184 +20 10004470 . C . . END=10004472 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:99:37:0,99,1485 +20 10004473 . A . . END=10004474 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:96:37:0,96,1440 +20 10004475 . T . . END=10004510 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:34:0,99,1114 +20 10004511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:92:39:0,92,1183 +20 10004512 . T . . END=10004525 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:99:38:0,102,1242 +20 10004526 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:98:39:0,98,1202 +20 10004527 . A . . END=10004534 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:38:0,99,1182 +20 10004535 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:96:38:0,96,1184 +20 10004536 . T . . END=10004554 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:37:0,100,1115 +20 10004555 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:95:37:0,95,1066 +20 10004556 . A . . END=10004560 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:99:37:0,103,1151 +20 10004561 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:81:38:0,81,1117 +20 10004562 . A . . END=10004568 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:93:35:0,93,1395 +20 10004569 . A . . END=10004578 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:36:0,99,1119 +20 10004579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:83:38:0,83,1154 +20 10004580 . T . . END=10004609 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:44:99:38:0,111,1209 +20 10004610 . A C, . . DP=134;ExcessHet=3.01;RAW_MQandDP=468605,134 GT:AD:DP:GQ:PL:SB ./.:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 ./.:0,45,0:45:99:1337,134,0,1337,134,1337:0,0,25,20 +20 10004611 . C . . END=10004691 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:46:99:39:0,100,1230 +20 10004692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:42:93:42:0,93,1281 +20 10004693 . A . . END=10004722 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:46:99:39:0,117,1129 +20 10004723 . T . . END=10004724 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:44:93:42:0,93,1395 +20 10004725 . A G, . . BaseQRankSum=-2.154e+00;DP=107;ExcessHet=3.01;MQRankSum=3.01;RAW_MQandDP=198562,65;ReadPosRankSum=2.09 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,30,0:65:99:.:980,0,1168,1085,1258,2343:10,25,17,13 ./.:.:44:93:42:0,93,1395,93,1395,1395 +20 10004726 . T . . END=10004734 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:44:93:42:0,93,1395 +20 10004735 . C . . END=10004747 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:43:72:39:0,72,1080 +20 10004748 . C . . END=10004755 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:40:81:39:0,81,1215 +20 10004756 . C . . END=10004767 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:41:72:40:0,72,1080 +20 10004768 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:40:66:40:0,66,990 +20 10004769 . TAAAACTATGC T, . . BaseQRankSum=1.60;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=353426,117;ReadPosRankSum=1.88 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004770 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004771 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004772 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004773 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004774 . C *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004775 . T *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004776 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004777 . T *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004778 . G *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004779 . C *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004780 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:0:40:0,0,277 +20 10004781 . A . . END=10004782 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:99:40:0,111,1665 +20 10004783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:44:40:0,44,1109 +20 10004784 . C . . END=10004786 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:99:40:0,106,1181 +20 10004787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:66:40:0,66,1173 +20 10004788 . G . . END=10004873 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:49:99:40:0,99,1277 +20 10004874 . A C, . . DP=134;ExcessHet=3.01;RAW_MQandDP=475423,134 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 ./.:0,47,0:47:99:0|1:10004874_A_C:1744,141,0,1744,141,1744:0,0,22,25 +20 10004875 . T . . END=10004886 GT:DP:GQ:MIN_DP:PL ./.:86:99:85:0,120,1800 ./.:51:99:49:0,115,1498 +20 10004887 . A G, . . BaseQRankSum=0.356;ClippingRankSum=0.00;DP=133;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=473282,133;ReadPosRankSum=2.05 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 ./.:27,21,0:48:99:0|1:10004874_A_C:511,0,709,592,771,1363:14,13,11,10 +20 10004888 . A . . END=10005009 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:50:99:44:0,108,1306 +20 10005010 . C T, . . DP=117;ExcessHet=3.01;RAW_MQandDP=418441,117 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 ./.:0,43,0:43:99:1366,129,0,1366,129,1366:0,0,21,22 +20 10005011 . G . . END=10005023 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:50:99:49:0,120,1800 +20 10005024 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:50:87:50:0,87,1434 +20 10005025 . T . . END=10005163 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:53:99:45:0,119,1471 +20 10005164 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:46:96:46:0,96,1285 +20 10005165 . C . . END=10005204 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:46:99:41:0,111,1196 +20 10005205 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:43:95:43:0,95,1227 +20 10005206 . A . . END=10005426 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:54:99:43:0,117,1344 +20 10005427 . C T, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=375241,105;ReadPosRankSum=-7.250e-01 GT:AD:DP:GQ:PL:SB ./.:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 ./.:1,48,0:49:99:1493,136,0,1496,143,1503:1,0,24,24 +20 10005428 . A . . END=10005498 GT:DP:GQ:MIN_DP:PL ./.:71:99:57:0,120,1800 ./.:52:99:47:0,120,1800 +20 10005499 . A G, . . DP=129;ExcessHet=3.01;RAW_MQandDP=464400,129 GT:AD:DP:GQ:PL:SB ./.:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 ./.:0,52,0:52:99:1645,155,0,1645,155,1645:0,0,26,26 +20 10005500 . T . . END=10005586 GT:DP:GQ:MIN_DP:PL ./.:71:99:66:0,120,1800 ./.:49:99:42:0,109,1334 +20 10005587 . A G, . . BaseQRankSum=-8.340e-01;DP=114;ExcessHet=3.01;MQRankSum=-9.720e-01;RAW_MQandDP=256969,72;ReadPosRankSum=0.248 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,36,0:72:99:.:1258,0,1236,1366,1345,2710:19,17,16,20 ./.:.:49:99:42:0,109,1334,109,1334,1334 +20 10005588 . A . . END=10005619 GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:49:99:42:0,109,1334 +20 10005620 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:45:96:45:0,96,1306 +20 10005621 . T . . END=10005722 GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:50:99:41:0,114,1274 +20 10005723 . A G, . . DP=137;ExcessHet=3.01;RAW_MQandDP=490969,137 GT:AD:DP:GQ:PL:SB ./.:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 ./.:0,51,0:51:99:1437,152,0,1437,152,1437:0,0,29,22 +20 10005724 . A . . END=10006063 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:52:99:38:0,99,1164 +20 10006064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:41:80:41:0,80,1121 +20 10006065 . T . . END=10006069 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:43:99:42:0,120,1800 +20 10006070 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:42:94:42:0,94,1159 +20 10006071 . A . . END=10006111 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:40:99:34:0,99,1256 +20 10006112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:78:35:0,78,1060 +20 10006113 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:88:35:0,88,1059 +20 10006114 . A . . END=10006120 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10006121 . T . . END=10006126 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:93:34:0,93,1395 +20 10006127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:86:34:0,86,1038 +20 10006128 . T . . END=10006131 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10006132 . A . . END=10006135 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:35:0,102,1530 +20 10006136 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:90:35:0,90,1030 +20 10006137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10006138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:88:35:0,88,1060 +20 10006139 . C . . END=10006142 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:34:0,99,1485 +20 10006143 . A . . END=10006148 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:93:35:0,93,1395 +20 10006149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:87:35:0,87,1305 +20 10006150 . G . . END=10006158 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:90:33:0,90,1350 +20 10006159 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:83:34:0,83,1005 +20 10006160 . A . . END=10006164 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:33:90:32:0,90,1350 +20 10006165 . C . . END=10006189 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:34:0,99,1038 +20 10006190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:38:96:38:0,96,1141 +20 10006191 . G . . END=10006202 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:38:99:35:0,99,1485 +20 10006203 . A . . END=10006210 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:93:32:0,93,1395 +20 10006211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10006212 . G . . END=10006214 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10006215 . T . . END=10006218 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10006219 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:91:37:0,91,1054 +20 10006220 . G . . END=10006222 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:36:0,102,1530 +20 10006223 . A . . END=10006224 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:96:36:0,96,1440 +20 10006225 . A . . END=10006290 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:52:99:37:0,99,1162 +20 10006291 . G A, . . BaseQRankSum=0.311;DP=121;ExcessHet=3.01;MQRankSum=-1.081e+00;RAW_MQandDP=295179,84;ReadPosRankSum=-1.447e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:53,31,0:84:99:.:1007,0,1905,1167,1998,3165:25,28,16,15 ./.:.:52:99:37:0,99,1162,99,1162,1162 +20 10006292 . A . . END=10006383 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:52:99:37:0,99,1162 +20 10006384 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:43:89:43:0,89,1158 +20 10006385 . A . . END=10006403 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:45:99:40:0,102,1530 +20 10006404 . A C, . . BaseQRankSum=1.72;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=402651,114;ReadPosRankSum=-5.390e-01 GT:AD:DP:GQ:PL:SB ./.:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 ./.:1,36,0:37:99:1061,100,0,1064,107,1071:0,1,15,21 +20 10006405 . C . . END=10006410 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:40:99:38:0,102,1159 +20 10006411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:80:38:0,80,1080 +20 10006412 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:75:38:0,75,1050 +20 10006413 . C . . END=10006428 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:40:99:38:0,110,1191 +20 10006429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:84:38:0,84,1131 +20 10006430 . A . . END=10006446 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:99:37:0,102,1530 +20 10006447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:83:39:0,83,1144 +20 10006448 . A . . END=10006455 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:99:38:0,105,1575 +20 10006456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:98:38:0,98,1165 +20 10006457 . A . . END=10006464 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:38:0,99,1154 +20 10006465 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:98:39:0,98,1163 +20 10006466 . G . . END=10006476 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:36:0,99,1127 +20 10006477 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:37:94:37:0,94,1083 +20 10006478 . A . . END=10006673 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:46:99:37:0,106,1199 +20 10006674 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:42:93:42:0,93,1255 +20 10006675 . C . . END=10006681 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:45:99:44:0,120,1800 +20 10006682 . T A, . . DP=120;ExcessHet=3.01;RAW_MQandDP=426326,120 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 ./.:0,46,0:46:99:1399,137,0,1399,137,1399:0,0,26,20 +20 10006683 . A . . END=10006756 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:44:99:38:0,100,1074 +20 10006757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:39:96:39:0,96,1139 +20 10006758 . A . . END=10006774 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:99:38:0,99,1196 +20 10006775 . T . . END=10006780 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:90:39:0,90,1350 +20 10006781 . C . . END=10006783 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:38:81:37:0,81,1215 +20 10006784 . T . . END=10006789 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:39:72:37:0,72,1080 +20 10006790 . T . . END=10006799 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:60:36:0,60,900 +20 10006800 . A . . END=10006804 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:57:40:0,57,855 +20 10006805 . G . . END=10006806 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:54:40:0,54,810 +20 10006807 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:41:48:41:0,48,720 +20 10006808 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:38:45:38:0,45,675 +20 10006809 . C . . END=10006810 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:39:42:0,39,585 +20 10006811 . A . . END=10006814 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:43:42:41:0,42,630 +20 10006815 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:39:42:0,39,585 +20 10006816 . T . . END=10006817 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:30:42:0,30,450 +20 10006818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:24:42:0,24,360 +20 10006819 . AAAAC A, . . DP=115;ExcessHet=3.01;RAW_MQandDP=425700,115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006820 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006821 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006822 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006823 . C *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:0:43:0,0,0 +20 10006825 . A . . END=10006826 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:44:93:43:0,93,1395 +20 10006827 . C . . END=10006846 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:41:0,99,1237 +20 10006847 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:77:42:0,77,1173 +20 10006848 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:42:0,120,1800 +20 10006849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:89:41:0,89,1203 +20 10006850 . A . . END=10006888 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:38:0,106,1163 +20 10006889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:95:42:0,95,1261 +20 10006890 . A . . END=10006891 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,107,1197 +20 10006892 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:68:42:0,68,1168 +20 10006893 . A . . END=10006899 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:38:0,114,1189 +20 10006900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:38:97:38:0,97,1147 +20 10006901 . C . . END=10006912 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:38:0,111,1665 +20 10006913 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:79:39:0,79,1123 +20 10006914 . A . . END=10006916 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:99:38:0,102,1134 +20 10006917 . G . . END=10006918 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:38:96:38:0,96,1117 +20 10006919 . A . . END=10006924 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:39:0,105,1189 +20 10006925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:98:42:0,98,1267 +20 10006926 . A . . END=10006928 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:42:0,114,1710 +20 10006929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:96:42:0,96,1257 +20 10006930 . A . . END=10006943 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:41:0,111,1263 +20 10006944 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:91:40:0,91,1121 +20 10006945 . T . . END=10007001 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:44:99:38:0,105,1400 +20 10007002 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:92:39:0,92,1168 +20 10007003 . T . . END=10007038 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:38:0,102,1241 +20 10007039 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:97:43:0,97,1320 +20 10007040 . G . . END=10007042 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:42:0,117,1755 +20 10007043 . G A, . . BaseQRankSum=2.41;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=0.482 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:59:0,120,1800,120,1800,1800 ./.:14,27,0:41:99:.:752,0,298,794,379,1174:7,7,17,10 +20 10007044 . G . . END=10007079 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:38:0,101,1168 +20 10007080 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:98:39:0,98,1144 +20 10007081 . G . . END=10007083 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:99:38:0,105,1575 +20 10007084 . A . . END=10007087 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:96:38:0,96,1440 +20 10007088 . A . . END=10007097 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:37:99:33:0,99,1088 +20 10007098 . A . . END=10007105 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:90:33:0,90,1350 +20 10007106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:35:88:35:0,88,1119 +20 10007107 . G . . END=10007110 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:93:33:0,93,1395 +20 10007111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:99:34:0,99,1485 +20 10007112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:80:33:0,80,1041 +20 10007113 . G . . END=10007114 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:99:33:0,99,1063 +20 10007115 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:32:96:32:0,96,983 +20 10007116 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:99:33:0,99,983 +20 10007117 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:98:33:0,98,1002 +20 10007118 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:82:33:0,82,1028 +20 10007119 . C . . END=10007127 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:36:99:33:0,99,1031 +20 10007128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:94:41:0,94,1227 +20 10007129 . G . . END=10007130 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,120,1800 +20 10007131 . T . . END=10007132 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:95:41:0,95,1219 +20 10007133 . G . . END=10007135 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:40:0,104,1210 +20 10007136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:90:40:0,90,1207 +20 10007137 . A . . END=10007140 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:39:0,102,1206 +20 10007141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:98:41:0,98,1296 +20 10007142 . G . . END=10007146 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,114,1710 +20 10007147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:76:41:0,76,1165 +20 10007148 . C . . END=10007149 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:41:0,114,1710 +20 10007150 . G C, . . BaseQRankSum=-2.939e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=374400,104;ReadPosRankSum=-7.700e-02 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 ./.:29,11,0:40:99:.:.:199,0,798,286,831,1118:19,10,7,4 +20 10007151 . G . . END=10007167 GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:41:99:37:0,102,1530 +20 10007168 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:38:97:38:0,97,1133 +20 10007169 . T . . END=10007174 GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:37:99:36:0,100,1079 +20 10007175 . C T, . . BaseQRankSum=2.25;DP=98;ExcessHet=3.01;MQRankSum=1.32;RAW_MQandDP=216841,61;ReadPosRankSum=-1.213e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:23,38,0:61:99:.:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 ./.:.:37:89:37:.:.:0,89,1076,89,1076,1076 +20 10007176 . T . . END=10007190 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:38:99:36:0,99,1138 +20 10007191 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:39:86:39:0,86,1084 +20 10007192 . A . . END=10007193 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:99:39:0,106,1159 +20 10007194 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:93:37:0,93,1080 +20 10007195 . G . . END=10007233 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:38:99:35:0,99,1001 +20 10007234 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:98:37:0,98,1098 +20 10007235 . C . . END=10007255 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:34:0,99,1028 +20 10007256 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:91:36:0,91,1012 +20 10007257 . C . . END=10007266 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:99:37:0,102,1132 +20 10007267 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:96:40:0,96,1440 +20 10007268 . G . . END=10007275 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:99:39:0,99,1485 +20 10007276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:92:36:0,92,1087 +20 10007277 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:36:0,99,1485 +20 10007278 . T . . END=10007286 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:93:33:0,93,1027 +20 10007287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:99:37:0,99,1485 +20 10007288 . G . . END=10007291 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:93:35:0,93,1395 +20 10007292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:89:35:0,89,1063 +20 10007293 . C . . END=10007305 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:34:90:31:0,90,995 +20 10007306 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:33:87:33:0,87,1041 +20 10007307 . G . . END=10007313 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:33:93:33:0,93,1395 +20 10007314 . A . . END=10007322 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:35:0,99,1485 +20 10007323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:79:36:0,79,1012 +20 10007324 . A . . END=10007334 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:33:0,99,1051 +20 10007335 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:97:36:0,97,1036 +20 10007336 . C . . END=10007337 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:99:34:0,102,1051 +20 10007338 . C . . END=10007341 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:93:34:0,93,1395 +20 10007342 . C . . END=10007350 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:36:0,99,1485 +20 10007351 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:34:85:34:0,85,998 +20 10007352 . C T, . . DP=106;ExcessHet=3.01;RAW_MQandDP=378841,106 GT:AD:DP:GQ:PL:SB ./.:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 ./.:0,37,0:37:99:1150,110,0,1150,110,1150:0,0,10,27 +20 10007353 . A . . END=10007376 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:37:99:37:0,102,1530 +20 10007377 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:36:81:36:0,81,1069 +20 10007378 . T . . END=10007388 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:37:99:36:0,102,1131 +20 10007389 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:38:88:38:0,88,1139 +20 10007390 . A . . END=10007419 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:40:99:37:0,102,1241 +20 10007420 . T C, . . BaseQRankSum=-3.784e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=1.03 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:99:58:0,120,1800,120,1800,1800 ./.:18,19,0:37:99:.:412,0,447,466,504,970:12,6,6,13 +20 10007421 . G . . END=10007456 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:42:99:37:0,103,1174 +20 10007457 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:39:90:39:0,90,1201 +20 10007458 . C . . END=10007465 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:42:99:41:0,106,1195 +20 10007466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:41:98:41:0,98,1248 +20 10007467 . A . . END=10007491 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:45:99:39:0,105,1226 +20 10007492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:45:98:45:0,98,1302 +20 10007493 . A . . END=10007530 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:46:99:43:0,115,1290 +20 10007531 . A G, . . DP=115;ExcessHet=3.01;RAW_MQandDP=411769,115 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 ./.:0,43,0:43:99:1228,127,0,1228,127,1228:0,0,29,14 +20 10007532 . G . . END=10007574 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:41:0,108,1304 +20 10007575 . C T, . . BaseQRankSum=-2.490e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=-8.910e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:65:0,120,1800,120,1800,1800 ./.:17,20,0:37:99:.:500,0,413,551,473,1024:11,6,11,9 +20 10007576 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:91:41:0,91,1178 +20 10007577 . C . . END=10007581 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:44:99:40:0,113,1265 +20 10007582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:43:95:43:0,95,1258 +20 10007583 . C . . END=10007612 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:43:99:39:0,100,1172 +20 10007613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:97:38:0,97,1117 +20 10007614 . A . . END=10007620 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:37:0,99,1485 +20 10007621 . A . . END=10007628 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:90:32:0,90,1350 +20 10007629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:86:36:0,86,1059 +20 10007630 . A . . END=10007631 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:92:36:0,92,1148 +20 10007632 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:80:37:0,80,1113 +20 10007633 . A . . END=10007634 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:34:90:34:0,90,1350 +20 10007635 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:35:89:35:0,89,1036 +20 10007636 . C . . END=10007639 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:35:90:35:0,90,1350 +20 10007640 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:34:87:34:0,87,1305 +20 10007641 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:93:36:0,93,1395 +20 10007642 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10007643 . A . . END=10007644 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:93:37:0,93,1395 +20 10007645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10007646 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:96:37:0,96,1440 +20 10007647 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10007648 . G . . END=10007649 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:96:34:0,96,1440 +20 10007650 . C . . END=10007652 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10007653 . A . . END=10007654 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:93:36:0,93,1395 +20 10007655 . G . . END=10007659 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:99:38:0,99,1485 +20 10007660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:98:39:0,98,1176 +20 10007661 . A . . END=10007691 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:40:99:38:0,100,1184 +20 10007692 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:42:98:42:0,98,1251 +20 10007693 . C . . END=10007834 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:41:0,103,1287 +20 10007835 . T C, . . BaseQRankSum=-4.583e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=0.073 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:65:0,120,1800,120,1800,1800 ./.:15,24,0:39:99:.:539,0,382,584,453,1038:3,12,13,11 +20 10007836 . G . . END=10007863 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:99:38:0,105,1159 +20 10007864 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:93:41:0,93,1177 +20 10007865 . A . . END=10007875 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:99:38:0,105,1165 +20 10007876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:40:89:40:0,89,1205 +20 10007877 . A . . END=10007959 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:40:0,106,1315 +20 10007960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:47:96:47:0,96,1409 +20 10007961 . T . . END=10007979 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:47:99:46:0,117,1413 +20 10007980 . A C, . . DP=133;ExcessHet=3.01;RAW_MQandDP=486600,133 GT:AD:DP:GQ:PL:SB ./.:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 ./.:0,43,0:43:99:1307,128,0,1307,128,1307:0,0,19,24 +20 10007981 . A . . END=10007982 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:99:46:0,105,1575 +20 10007983 . C . . END=10007985 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:45:93:45:0,93,1395 +20 10007986 . A . . END=10007994 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:45:84:44:0,84,1260 +20 10007995 . G . . END=10007998 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:43:72:43:0,72,1080 +20 10007999 . G . . END=10008008 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:43:60:41:0,60,900 +20 10008009 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:57:46:0,57,855 +20 10008010 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:48:46:0,48,720 +20 10008011 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:45:46:0,45,675 +20 10008012 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:42:46:0,42,630 +20 10008013 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:47:45:47:0,45,675 +20 10008014 . C . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:47:42:47:0,42,630 +20 10008015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:39:46:0,39,585 +20 10008016 . A . . END=10008017 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:27:46:0,27,405 +20 10008018 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:45:24:45:0,24,360 +20 10008019 . T . . END=10008020 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:43:21:41:0,21,315 +20 10008021 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:41:18:41:0,18,270 +20 10008022 . A . . END=10008023 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:44:12:44:0,12,180 +20 10008024 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:9:46:0,9,135 +20 10008025 . A . . END=10008026 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:48:12:47:0,12,180 +20 10008027 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:47:15:47:0,15,225 +20 10008028 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:49:18:49:0,18,270 +20 10008029 . T TA,TAA, . . BaseQRankSum=0.409;DP=130;ExcessHet=3.01;MQRankSum=0.576;RAW_MQandDP=478451,130;ReadPosRankSum=-1.326e+00 GT:AD:DP:GQ:PL:SB ./.:3,72,0,0:75:99:2024,145,0,2033,222,2110,2033,222,2110,2110:1,2,27,45 ./.:0,17,22,0:39:99:1244,629,524,416,0,337,1157,615,414,1113:0,0,17,22 +20 10008030 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:47:0:47:0,0,0 +20 10008031 . A . . END=10008032 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:48:82:47:0,82,1361 +20 10008033 . A . . END=10008038 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:99:47:0,120,1800 +20 10008039 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:26:44:0,26,1086 +20 10008040 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:45:99:45:0,113,1254 +20 10008041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:70:44:0,70,1165 +20 10008042 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:39:98:39:0,98,1105 +20 10008043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:45:99:45:0,120,1800 +20 10008044 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:39:67:39:0,67,1007 +20 10008045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:42:96:42:0,96,1233 +20 10008046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:41:88:41:0,88,1166 +20 10008047 . A . . END=10008101 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:46:99:41:0,103,1214 +20 10008102 . A . . END=10008103 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:45:90:45:0,90,1350 +20 10008104 . A . . END=10008106 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:84:40:0,84,1260 +20 10008107 . A . . END=10008111 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:43:72:41:0,72,1080 +20 10008112 . T . . END=10008116 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:60:43:0,60,900 +20 10008117 . C . . END=10008120 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:47:54:46:0,54,810 +20 10008121 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:51:49:0,51,765 +20 10008122 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:48:49:0,48,720 +20 10008123 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:48:45:48:0,45,675 +20 10008124 . T . . END=10008127 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:48:42:47:0,42,630 +20 10008128 . T . . END=10008129 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:39:48:0,39,585 +20 10008130 . T . . END=10008132 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:27:44:0,27,405 +20 10008133 . C . . END=10008137 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:50:21:48:0,21,315 +20 10008138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:50:18:50:0,18,270 +20 10008139 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:53:15:53:0,15,225 +20 10008140 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:55:9:55:0,9,135 +20 10008141 . C . . END=10008142 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:55:6:54:0,6,90 +20 10008143 . C . . END=10008145 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:53:0:51:0,0,0 +20 10008146 . TA T, . . DP=121;ExcessHet=3.01;RAW_MQandDP=442100,121 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 ./.:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008147 . A *, . . DP=121 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 ./.:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:55:0:55:0,0,0 +20 10008149 . A . . END=10008180 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:51:99:46:0,120,1800 +20 10008181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:46:88:46:0,88,1297 +20 10008182 . A . . END=10008194 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:44:99:43:0,103,1289 +20 10008195 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:94:43:0,94,1201 +20 10008196 . T . . END=10008197 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:44:99:44:0,102,1530 +20 10008198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:42:98:42:0,98,1236 +20 10008199 . A . . END=10008203 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:41:99:39:0,102,1530 +20 10008204 . A . . END=10008205 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:39:90:38:0,90,1166 +20 10008206 . T . . END=10008208 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:39:99:38:0,105,1198 +20 10008209 . T . . END=10008210 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:39:96:38:0,96,1440 +20 10008211 . A . . END=10008217 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:99:40:0,99,1240 +20 10008218 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:40:96:40:0,96,1244 +20 10008219 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:86:43:0,86,1222 +20 10008220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:77:43:0,77,1143 +20 10008221 . T C, . . DP=116;ExcessHet=3.01;RAW_MQandDP=420569,116 GT:AD:DP:GQ:PL:SB ./.:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 ./.:0,36,0:36:99:1039,106,0,1039,106,1039:0,0,20,16 +20 10008222 . T . . END=10008245 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:46:99:42:0,105,1268 +20 10008246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:47:91:47:0,91,1314 +20 10008247 . T . . END=10008388 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:57:99:47:0,110,1465 +20 10008389 . A G, . . BaseQRankSum=-3.469e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=205200,57;ReadPosRankSum=0.498 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:99:45:0,108,1620,108,1620,1620 ./.:26,29,0:55:99:.:674,0,697,752,783,1535:17,9,14,15 +20 10008390 . T . . END=10008457 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:59:99:48:0,119,1721 +20 10008458 . T G, . . DP=117;ExcessHet=3.01;RAW_MQandDP=364642,117 GT:AD:DP:GQ:PL:SB ./.:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 ./.:0,46,0:46:99:1398,138,0,1398,138,1398:0,0,24,22 +20 10008459 . A . . END=10008625 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:47:99:41:0,107,1140 +20 10008626 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:48:86:48:0,86,1316 +20 10008627 . A . . END=10008707 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:44:99:41:0,99,1095 +20 10008708 . A . . END=10008709 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:42:96:42:0,96,1440 +20 10008710 . C . . END=10008711 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:41:99:41:0,99,1485 +20 10008712 . A . . END=10008715 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:43:90:41:0,90,1350 +20 10008716 . C . . END=10008725 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:40:84:38:0,84,1260 +20 10008726 . A . . END=10008731 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:39:72:39:0,72,1080 +20 10008732 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:40:60:37:0,60,900 +20 10008733 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:94:47:0,94,1689 ./.:40:60:37:0,60,900 +20 10008734 . G . . END=10008737 GT:DP:GQ:MIN_DP:PL ./.:48:99:47:0,120,1800 ./.:40:60:37:0,60,900 +20 10008738 . C . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:47:0,120,1800 ./.:40:51:40:0,51,765 +20 10008739 . C . . END=10008741 GT:DP:GQ:MIN_DP:PL ./.:48:99:47:0,120,1800 ./.:41:48:38:0,48,720 +20 10008742 . G T, . . BaseQRankSum=3.89;ClippingRankSum=0.00;DP=84;ExcessHet=3.01;MQRankSum=-1.113e+00;RAW_MQandDP=188475,84;ReadPosRankSum=0.221 GT:AD:DP:GQ:PL:SB ./.:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 ./.:13,20,0:33:99:542,0,265,581,325,907:7,6,10,10 +20 10008743 . T . . END=10008744 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:41:42:40:0,42,630 +20 10008745 . T . . END=10008746 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:40:36:40:0,36,540 +20 10008747 . T . . END=10008749 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:39:30:38:0,30,450 +20 10008750 . T . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:40:12:40:0,12,936 +20 10008751 . A . . END=10008753 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:42:21:41:0,21,315 +20 10008754 . A . . END=10008755 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:43:24:42:0,24,360 +20 10008756 . T . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:43:21:43:0,21,315 +20 10008757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:44:18:44:0,18,270 +20 10008758 . C CA,CAA, . . BaseQRankSum=0.130;DP=81;ExcessHet=3.01;MQRankSum=-1.168e+00;RAW_MQandDP=182457,81;ReadPosRankSum=-5.200e-02 GT:AD:DP:GQ:PL:SB ./.:4,31,0,0:35:10:721,10,0,733,102,825,733,102,825,825:3,1,16,15 ./.:0,20,11,0:31:99:804,284,194,434,0,396,767,275,433,745:0,0,14,17 +20 10008759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:53:0,120,1800 ./.:42:0:42:0,0,0 +20 10008760 . A . . END=10008772 GT:DP:GQ:MIN_DP:PL ./.:55:99:53:0,120,1800 ./.:43:99:41:0,102,1530 +20 10008773 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:0:54:0,0,1660 ./.:42:34:42:0,34,1130 +20 10008774 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:55:0,117,1755 ./.:40:99:40:0,105,1575 +20 10008775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:60:55:0,60,1923 ./.:44:35:44:0,35,1209 +20 10008776 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:41:89:41:0,89,1223 +20 10008777 . C . . END=10008805 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:41:99:39:0,107,1204 +20 10008806 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:40:91:40:0,91,1167 +20 10008807 . A . . END=10008859 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:99:36:0,99,1056 +20 10008860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:37:78:37:0,78,1039 +20 10008861 . G . . END=10008887 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:40:99:38:0,102,1132 +20 10008888 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:38:98:38:0,98,1079 +20 10008889 . T . . END=10008890 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:99:38:0,111,1665 +20 10008891 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:98:39:0,98,1121 +20 10008892 . A . . END=10008901 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:99:37:0,99,1107 +20 10008902 . A . . END=10008906 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:38:90:37:0,90,1350 +20 10008907 . G . . END=10008910 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:36:81:30:0,81,1215 +20 10008911 . G . . END=10008913 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:36:75:35:0,75,1125 +20 10008914 . A . . END=10008920 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:34:63:32:0,63,945 +20 10008921 . C CA, . . BaseQRankSum=0.610;DP=80;ExcessHet=3.01;MQRankSum=-1.906e+00;RAW_MQandDP=155512,49;ReadPosRankSum=0.173 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:18,16,0:34:99:.:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 ./.:.:31:6:31:.:.:0,6,658,6,658,658 +20 10008922 . A . . END=10008930 GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:37:57:33:0,57,855 +20 10008931 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:54:40:0,54,810 +20 10008932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:41:57:41:0,57,855 +20 10008933 . A . . END=10008934 GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:54:38:0,54,810 +20 10008935 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:0:39:0,0,807 +20 10008936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:39:40:0,39,974 +20 10008937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:45:40:0,45,675 +20 10008938 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:42:40:0,42,630 +20 10008939 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:35:39:0,35,950 +20 10008940 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:2:39:0,2,898 +20 10008941 . A . . END=10008942 GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:39:38:0,39,585 +20 10008943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:47:78:47:0,78,1170 ./.:38:36:38:0,36,540 +20 10008944 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:78:47:0,78,1170 ./.:38:33:38:0,33,495 +20 10008945 . A . . END=10008946 GT:DP:GQ:MIN_DP:PL ./.:47:81:46:0,81,1215 ./.:38:30:38:0,30,450 +20 10008947 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:81:46:0,81,1215 ./.:38:0:38:0,0,894 +20 10008948 . TA T, . . BaseQRankSum=0.994;DP=85;ExcessHet=3.01;MQRankSum=2.05;RAW_MQandDP=256423,85;ReadPosRankSum=0.884 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 ./.:0,33,0:33:99:.:.:1406,99,0,1406,99,1406:0,0,15,18 +20 10008949 . A *, . . DP=85 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 ./.:0,33,0:33:99:.:.:1406,99,0,1406,99,1406:0,0,15,18 +20 10008950 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:99:52:0,99,1485 ./.:39:0:39:0,0,0 +20 10008951 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:93:51:0,93,1395 ./.:39:0:39:0,0,0 +20 10008952 . CACACACACACACA C,CCA,CCACACACACA,CCACACACACACA,CCACA, . . BaseQRankSum=0.941;DP=95;ExcessHet=3.01;MQRankSum=1.84;RAW_MQandDP=282669,95;ReadPosRankSum=0.716 GT:AD:DP:GQ:PL:SB ./.:1,3,14,5,11,0,0:34:99:1704,876,1258,525,811,845,726,514,173,703,582,342,0,443,530,1135,1092,744,779,607,1321,1135,1092,744,779,607,1321,1321:1,0,25,8 ./.:0,0,0,15,0,12,0:27:99:1315,1243,1282,1243,1282,1282,505,512,512,439,1243,1282,1282,512,1282,648,714,714,0,714,719,1243,1282,1282,512,1282,714,1282:0,0,12,15 +20 10008953 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008954 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008955 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008956 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008957 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008958 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008959 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008960 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008961 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008962 . C *, . . DP=98 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:39:82:39:0,82,1154,82,1154,1154 +20 10008963 . A *, . . DP=98 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:39:82:39:0,82,1154,82,1154,1154 +20 10008964 . C *, . . DP=99 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:42:99:40:0,99,1485,99,1485,1485 +20 10008965 . A *, . . DP=99 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:42:99:40:0,99,1485,99,1485,1485 +20 10008966 . C . . END=10008979 GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:42:99:40:0,99,1485 +20 10008980 . C . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:43:95:43:0,95,1276 +20 10008981 . A . . END=10008986 GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:44:99:42:0,99,1342 +20 10008987 . A . . END=10008989 GT:DP:GQ:MIN_DP:PL ./.:59:94:59:0,94,2181 ./.:44:99:42:0,99,1342 +20 10008990 . C . . END=10008992 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:99:42:0,99,1342 +20 10008993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:72:44:0,72,1233 +20 10008994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:61:44:0,61,1238 +20 10008995 . A . . END=10008996 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:97:44:0,97,1262 +20 10008997 . C . . END=10009012 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:45:99:42:0,109,1342 +20 10009013 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:98:44:0,98,1273 +20 10009014 . G . . END=10009060 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:46:99:36:0,99,1287 +20 10009061 . T . . END=10009068 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:90:35:0,90,1055 +20 10009069 . T . . END=10009070 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:34:84:33:0,84,1017 +20 10009071 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:34:99:34:0,99,1485 +20 10009072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:31:78:31:0,78,924 +20 10009073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:32:96:32:0,96,1009 +20 10009074 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:99:35:0,99,1485 +20 10009075 . A . . END=10009076 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:93:35:0,93,1080 +20 10009077 . A . . END=10009091 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:37:99:35:0,99,1159 +20 10009092 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:39:93:39:0,93,1178 +20 10009093 . A . . END=10009094 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:40:99:39:0,114,1710 +20 10009095 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:87:42:0,87,1177 +20 10009096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:95:42:0,95,1256 +20 10009097 . A . . END=10009194 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:99:37:0,99,1123 +20 10009195 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:40:90:40:0,90,1189 +20 10009196 . C . . END=10009226 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:41:99:39:0,108,1142 +20 10009227 . A G, . . BaseQRankSum=-1.130e-01;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=1.43;RAW_MQandDP=350188,103;ReadPosRankSum=-1.119e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:23,39,0:62:99:.:.:1398,0,740,1468,857,2325:16,7,19,20 ./.:16,24,0:40:99:0|1:10009227_A_G:640,0,377,688,449,1137:6,10,13,11 +20 10009228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:59:0,120,1800 ./.:41:95:41:0,95,1151 +20 10009229 . C . . END=10009245 GT:DP:GQ:MIN_DP:PL ./.:62:99:59:0,120,1800 ./.:42:99:39:0,102,1245 +20 10009246 . A G, . . BaseQRankSum=1.56;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=375408,114;ReadPosRankSum=1.72 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,77,0:77:99:.:.:3031,231,0,3031,231,3031:0,0,42,35 ./.:1,35,0:36:99:0|1:10009227_A_G:1312,101,0,1314,108,1321:0,1,19,16 +20 10009247 . A . . END=10009252 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:41:99:40:0,101,1068 +20 10009253 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:40:75:40:0,75,1104 +20 10009254 . A . . END=10009256 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:39:99:39:0,111,1665 +20 10009257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:37:61:37:0,61,955 +20 10009258 . G . . END=10009274 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:42:99:39:0,99,1042 +20 10009275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:42:96:42:0,96,1203 +20 10009276 . T . . END=10009283 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:43:99:42:0,114,1710 +20 10009284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:44:96:44:0,96,1247 +20 10009285 . G . . END=10009399 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:50:99:40:0,99,1183 +20 10009400 . T A, . . DP=132;ExcessHet=3.01;RAW_MQandDP=475200,132 GT:AD:DP:GQ:PL:SB ./.:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 ./.:0,58,0:58:99:1856,174,0,1856,174,1856:0,0,31,27 +20 10009401 . A . . END=10009511 GT:DP:GQ:MIN_DP:PL ./.:78:99:72:0,120,1800 ./.:59:99:55:0,113,1581 +20 10009512 . C G, . . DP=131;ExcessHet=3.01;RAW_MQandDP=457640,131 GT:AD:DP:GQ:PL:SB ./.:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 ./.:0,53,0:53:99:1578,158,0,1578,158,1578:0,0,30,23 +20 10009513 . A . . END=10009525 GT:DP:GQ:MIN_DP:PL ./.:81:99:63:0,120,1800 ./.:55:99:54:0,120,1800 +20 10009526 . T C, . . BaseQRankSum=-1.994e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=-6.450e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:81:99:63:0,120,1800,120,1800,1800 ./.:50,2,0:52:99:.:0,119,1416,148,1422,1451:29,21,1,1 +20 10009527 . T . . END=10009718 GT:DP:GQ:MIN_DP:PL ./.:81:99:63:0,120,1800 ./.:55:99:47:0,120,1800 +20 10009719 . A G, . . BaseQRankSum=-3.827e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=409010,115;ReadPosRankSum=-1.459e+00 GT:AD:DP:GQ:PL:SB ./.:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 ./.:24,32,0:56:99:717,0,596,789,691,1480:8,16,20,12 +20 10009720 . T . . END=10009794 GT:DP:GQ:MIN_DP:PL ./.:54:99:47:0,120,1800 ./.:53:99:43:0,120,1800 +20 10009795 . A G, . . DP=92;ExcessHet=3.01;RAW_MQandDP=328969,92 GT:AD:DP:GQ:PL:SB ./.:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 ./.:0,44,0:44:99:1429,132,0,1429,132,1429:0,0,22,22 +20 10009796 . C . . END=10009813 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:43:99:38:0,105,1575 +20 10009814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:38:96:38:0,96,1440 +20 10009815 . C . . END=10009820 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:38:99:33:0,99,1062 +20 10009821 . C . . END=10009825 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:35:93:34:0,93,1395 +20 10009826 . A . . END=10009827 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:99:37:0,99,1485 +20 10009828 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:87:37:0,87,1305 +20 10009829 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:57:37:0,57,855 +20 10009830 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:38:60:38:0,60,900 +20 10009831 . A . . END=10009832 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:54:36:0,54,810 +20 10009833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:37:42:37:0,42,630 +20 10009834 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:37:45:37:0,45,675 +20 10009835 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:36:48:36:0,48,720 +20 10009836 . A . . END=10009838 GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:39:51:38:0,51,765 +20 10009839 . A . . END=10009840 GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:37:57:36:0,57,855 +20 10009841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:39:51:0,39,585 ./.:35:54:34:0,54,810 +20 10009842 . G GAA, . . BaseQRankSum=0.872;DP=85;ExcessHet=3.01;MQRankSum=-6.030e-01;RAW_MQandDP=150092,51;ReadPosRankSum=1.72 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:19,15,0:34:99:.:570,0,690,629,738,1367:9,10,8,7 ./.:.:35:54:34:0,54,810,54,810,810 +20 10009843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:36:51:0,36,540 ./.:35:54:34:0,54,810 +20 10009844 . G A, . . BaseQRankSum=1.05;DP=83;ExcessHet=3.01;MQRankSum=0.975;RAW_MQandDP=262368,83;ReadPosRankSum=-1.555e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 ./.:0,31,0:31:93:0|1:10009844_G_A:1294,93,0,1294,93,1294:0,0,17,14 +20 10009845 . A . . END=10009847 GT:DP:GQ:MIN_DP:PL ./.:51:42:51:0,42,630 ./.:34:57:32:0,57,855 +20 10009848 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:51:54:0,51,765 ./.:34:57:32:0,57,855 +20 10009849 . A . . END=10009850 GT:DP:GQ:MIN_DP:PL ./.:55:57:54:0,57,855 ./.:34:60:32:0,60,900 +20 10009851 . A . . END=10009853 GT:DP:GQ:MIN_DP:PL ./.:56:63:56:0,63,945 ./.:34:60:32:0,60,900 +20 10009854 . G . . END=10009856 GT:DP:GQ:MIN_DP:PL ./.:57:72:56:0,72,1080 ./.:34:60:32:0,60,900 +20 10009857 . A . . END=10009860 GT:DP:GQ:MIN_DP:PL ./.:57:72:56:0,72,1080 ./.:36:72:34:0,72,1080 +20 10009861 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:84:56:0,84,1260 ./.:36:72:34:0,72,1080 +20 10009862 . G . . END=10009864 GT:DP:GQ:MIN_DP:PL ./.:58:84:56:0,84,1260 ./.:35:84:34:0,84,1260 +20 10009865 . A . . END=10009868 GT:DP:GQ:MIN_DP:PL ./.:57:90:56:0,90,1350 ./.:35:84:34:0,84,1260 +20 10009869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:90:56:0,90,1350 ./.:38:93:37:0,93,1395 +20 10009870 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:57:0,99,1485 ./.:38:93:37:0,93,1395 +20 10009871 . A G, . . BaseQRankSum=-8.030e-01;DP=98;ExcessHet=3.01;MQRankSum=1.50;RAW_MQandDP=291537,98;ReadPosRankSum=1.54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 ./.:0,37,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665:0,0,15,22 +20 10009872 . G . . END=10009874 GT:DP:GQ:MIN_DP:PL ./.:57:99:55:0,108,1620 ./.:38:96:38:0,96,1440 +20 10009875 . A G,AGGGAGG, . . BaseQRankSum=0.378;DP=95;ExcessHet=3.01;MQRankSum=1.36;RAW_MQandDP=280737,95;ReadPosRankSum=1.04 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:2,15,13,0:30:99:.:.:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 ./.:0,37,0,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665,1665,111,1665,1665:0,0,15,22 +20 10009876 . G . . END=10009878 GT:DP:GQ:MIN_DP:PL ./.:52:99:51:0,114,1710 ./.:36:99:34:0,99,1485 +20 10009879 . A G, . . BaseQRankSum=1.53;DP=85;ExcessHet=3.01;MQRankSum=1.57;RAW_MQandDP=250261,85;ReadPosRankSum=1.11 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:2,47,0:49:99:.:.:2273,150,0,2276,154,2279:2,0,15,32 ./.:0,35,0:35:99:0|1:10009844_G_A:1575,105,0,1575,105,1575:0,0,15,20 +20 10009880 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:48:0,120,1800 ./.:37:99:37:0,102,1530 +20 10009881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:48:0,120,1800 ./.:35:94:35:0,94,1053 +20 10009882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:48:0,120,1800 ./.:35:99:35:0,99,1485 +20 10009883 . A G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=251738,83 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,47,0:47:99:.:.:2180,147,0,2180,147,2181:0,0,15,32 ./.:0,33,0:33:99:0|1:10009844_G_A:1485,99,0,1485,99,1485:0,0,13,20 +20 10009884 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:53:0,120,1800 ./.:35:89:35:0,89,1025 +20 10009885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:96:52:0,96,1815 ./.:35:93:35:0,93,1020 +20 10009886 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:0:53:0,0,1567 ./.:35:99:34:0,101,1001 +20 10009887 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:50:0,109,1906 ./.:35:99:34:0,101,1001 +20 10009888 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:0:51:0,0,1610 ./.:35:99:34:0,101,1001 +20 10009889 . A . . END=10009891 GT:DP:GQ:MIN_DP:PL ./.:49:99:49:0,106,1800 ./.:35:99:34:0,101,1001 +20 10009892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:44:50:0,44,1725 ./.:35:99:34:0,101,1001 +20 10009893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:51:0,115,2005 ./.:35:99:34:0,101,1001 +20 10009894 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:48:53:0,48,1842 ./.:35:99:34:0,101,1001 +20 10009895 . G . . END=10009898 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,101,1001 +20 10009899 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:88:35:0,88,971 +20 10009900 . A . . END=10009901 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,108,1064 +20 10009902 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:81:36:0,81,1007 +20 10009903 . G . . END=10009904 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:99:36:0,105,1575 +20 10009905 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:83:38:0,83,1124 +20 10009906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:33:98:33:0,98,900 +20 10009907 . G . . END=10009956 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:99:39:0,100,1080 +20 10009957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:97:43:0,97,1341 +20 10009958 . A . . END=10010045 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:42:99:38:0,99,1204 +20 10010046 . G . . END=10010049 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:93:35:0,93,1395 +20 10010050 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:79:38:0,79,1062 +20 10010051 . A . . END=10010054 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:90:36:0,90,1350 +20 10010055 . T . . END=10010057 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:87:33:0,87,1027 +20 10010058 . A . . END=10010068 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:33:90:33:0,90,1350 +20 10010069 . A . . END=10010076 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,99,1485 +20 10010077 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:97:36:0,97,1080 +20 10010078 . A . . END=10010085 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,99,1046 +20 10010086 . C . . END=10010094 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:92:34:0,92,1055 +20 10010095 . A . . END=10010100 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:99:37:0,99,1485 +20 10010101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:96:36:0,96,1012 +20 10010102 . T . . END=10010105 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,102,998 +20 10010106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:90:35:0,90,993 +20 10010107 . A . . END=10010108 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,105,1575 +20 10010109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:94:37:0,94,1059 +20 10010110 . T . . END=10010122 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:41:99:38:0,114,1127 +20 10010123 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:45:89:45:0,89,1199 +20 10010124 . A . . END=10010272 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:99:34:0,99,1057 +20 10010273 . A . . END=10010276 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:96:34:0,96,1440 +20 10010277 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,99,1485 +20 10010278 . T . . END=10010287 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:32:0,90,1032 +20 10010288 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:87:35:0,87,1037 +20 10010289 . A . . END=10010293 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:34:0,90,1350 +20 10010294 . T . . END=10010295 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:81:33:0,81,970 +20 10010296 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:96:35:0,96,1440 +20 10010297 . A . . END=10010298 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010299 . A . . END=10010300 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:90:37:0,90,1350 +20 10010301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:87:37:0,87,1305 +20 10010302 . A . . END=10010312 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:39:99:35:0,99,1485 +20 10010313 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:91:36:0,91,1056 +20 10010314 . A . . END=10010315 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,102,1530 +20 10010316 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:32:96:32:0,96,981 +20 10010317 . T . . END=10010319 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,102,1530 +20 10010320 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:94:35:0,94,1105 +20 10010321 . A . . END=10010322 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,102,1530 +20 10010323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:89:35:0,89,1055 +20 10010324 . T . . END=10010329 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:33:0,99,1037 +20 10010330 . T . . END=10010351 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:30:0,90,960 +20 10010352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,99,1485 +20 10010353 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:34:0,90,1058 +20 10010354 . C . . END=10010355 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:99:34:0,99,1095 +20 10010356 . C . . END=10010358 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:93:34:0,93,1395 +20 10010359 . T . . END=10010363 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010364 . A . . END=10010365 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:96:37:0,96,1440 +20 10010366 . A . . END=10010370 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:96:36:0,96,1440 +20 10010372 . T . . END=10010373 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010374 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:94:35:0,94,1090 +20 10010375 . C . . END=10010392 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:40:99:35:0,99,1485 +20 10010393 . T G, . . BaseQRankSum=-1.738e+00;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=419282,118;ReadPosRankSum=-3.900e-01 GT:AD:DP:GQ:PL:SB ./.:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 ./.:18,21,0:39:99:530,0,466,584,530,1113:10,8,12,9 +20 10010394 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:40:99:40:0,114,1710 +20 10010395 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:39:84:39:0,84,1142 +20 10010396 . G . . END=10010494 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:49:99:37:0,102,1157 +20 10010495 . A . . END=10010497 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:90:50:0,90,1350 +20 10010498 . A . . END=10010501 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:81:51:0,81,1215 +20 10010502 . A . . END=10010504 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:72:50:0,72,1080 +20 10010505 . G . . END=10010508 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:63:52:0,63,945 +20 10010509 . T . . END=10010511 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:54:50:0,54,810 +20 10010512 . T . . END=10010513 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:51:51:0,51,765 +20 10010514 . A . . END=10010516 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:48:51:0,48,720 +20 10010517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:54:45:54:0,45,675 +20 10010518 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:54:39:54:0,39,585 +20 10010519 . T . . END=10010522 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:33:52:0,33,495 +20 10010523 . G . . END=10010528 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:24:52:0,24,360 +20 10010529 . T . . END=10010531 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:21:53:0,21,315 +20 10010532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:54:15:54:0,15,225 +20 10010533 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:12:51:0,12,180 +20 10010534 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:6:52:0,6,90 +20 10010535 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:9:53:0,9,135 +20 10010536 . G GA, . . DP=140;ExcessHet=3.01;RAW_MQandDP=523500,140 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 ./.:0,49,0:49:99:1509,147,0,1509,147,1509:0,0,20,29 +20 10010537 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:53:0:53:0,0,0 +20 10010538 . A . . END=10010675 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:48:99:38:0,103,1199 +20 10010676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:38:98:38:0,98,1184 +20 10010677 . T . . END=10010689 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:37:99:37:0,99,1485 +20 10010690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:37:95:37:0,95,1080 +20 10010691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:35:80:35:0,80,1017 +20 10010692 . C . . END=10010733 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:41:99:38:0,101,1165 +20 10010734 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:41:87:41:0,87,1218 +20 10010735 . T . . END=10010765 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:43:99:37:0,109,1046 +20 10010766 . T G, . . DP=106;ExcessHet=3.01;RAW_MQandDP=381600,106 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 ./.:0,38,0:38:99:1065,112,0,1065,112,1065:0,0,16,22 +20 10010767 . G . . END=10010820 GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:43:99:38:0,103,1161 +20 10010821 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:44:84:44:0,84,1309 +20 10010822 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:44:99:44:0,115,1281 +20 10010823 . G T, . . DP=101;ExcessHet=3.01;RAW_MQandDP=144000,40 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:61:0,120,1800,120,1800,1800 ./.:40,0,0:40:99:.:0,120,1251,120,1251,1251:17,23,0,0 +20 10010824 . G . . END=10010831 GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:48:99:46:0,120,1800 +20 10010832 . T C, . . DP=118;ExcessHet=3.01;RAW_MQandDP=420338,118 GT:AD:DP:GQ:PL:SB ./.:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 ./.:0,43,0:43:99:1323,128,0,1323,128,1323:0,0,19,24 +20 10010833 . A . . END=10011028 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:44:99:37:0,99,1185 +20 10011029 . C . . END=10011031 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:96:38:0,96,1113 +20 10011032 . A . . END=10011035 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:40:99:39:0,99,1485 +20 10011036 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:39:52:39:0,52,1072 +20 10011037 . A . . END=10011039 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:95:37:0,95,1126 +20 10011040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:79:36:0,79,1040 +20 10011041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:80:37:0,80,1044 +20 10011042 . A . . END=10011043 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:94:37:0,94,1107 +20 10011044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:86:37:0,86,1108 +20 10011045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:99:37:0,99,1136 +20 10011046 . G . . END=10011047 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:76:35:0,76,1052 +20 10011048 . G . . END=10011051 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:33:99:33:0,99,1015 +20 10011052 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:34:90:34:0,90,1018 +20 10011053 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:99:35:0,105,1128 +20 10011054 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:93:35:0,93,1057 +20 10011055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:99:35:0,104,1031 +20 10011056 . C . . END=10011057 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:93:35:0,93,971 +20 10011058 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:99:38:0,108,1620 +20 10011059 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:94:37:0,94,1021 +20 10011060 . T . . END=10011064 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:99:37:0,99,1120 +20 10011065 . C . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:98:38:0,98,1065 +20 10011066 . A . . END=10011074 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:99:34:0,99,932 +20 10011075 . C T, . . BaseQRankSum=5.36;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=298800,83;ReadPosRankSum=-1.036e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:44,39,0:83:99:.:1354,0,1333,1485,1450,2935:22,22,22,17 ./.:.:36:99:34:0,99,932,99,932,932 +20 10011076 . G . . END=10011077 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:34:0,99,932 +20 10011078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:91:36:0,91,1085 +20 10011079 . A . . END=10011083 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:99:34:0,99,1485 +20 10011084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:89:35:0,89,1065 +20 10011085 . T . . END=10011087 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:35:0,99,1056 +20 10011088 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:92:36:0,92,1053 +20 10011089 . A . . END=10011093 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:37:0,105,1575 +20 10011094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:94:36:0,94,1075 +20 10011095 . A . . END=10011096 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:37:0,105,1575 +20 10011097 . C . . END=10011098 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:96:36:0,96,962 +20 10011099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:39:99:39:0,102,1530 +20 10011100 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:97:37:0,97,1039 +20 10011101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:38:99:38:0,102,1530 +20 10011102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:84:37:0,84,1084 +20 10011103 . C . . END=10011111 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:38:99:36:0,99,1181 +20 10011112 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10011113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:87:35:0,87,1008 +20 10011114 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10011115 . C . . END=10011140 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:34:0,99,1095 +20 10011141 . T . . END=10011145 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:93:37:0,93,1108 +20 10011146 . A . . END=10011149 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:35:0,99,1485 +20 10011150 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:96:36:0,96,1096 +20 10011151 . T . . END=10011152 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10011153 . A . . END=10011156 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10011157 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:88:35:0,88,1071 +20 10011158 . C . . END=10011165 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:93:33:0,93,1395 +20 10011166 . C . . END=10011171 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:99:34:0,99,1485 +20 10011172 . T . . END=10011177 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:91:34:0,91,1065 +20 10011178 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10011179 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:83:37:0,83,1087 +20 10011180 . T . . END=10011227 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:40:99:36:0,101,1135 +20 10011228 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:40:89:40:0,89,1177 +20 10011229 . T . . END=10011280 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:46:99:41:0,111,1329 +20 10011281 . G A, . . BaseQRankSum=-2.303e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=172800,48;ReadPosRankSum=0.763 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:52:0,120,1800,120,1800,1800 ./.:46,2,0:48:99:.:0,124,1411,138,1416,1430:29,17,1,1 +20 10011282 . A . . END=10011308 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:51:99:47:0,120,1800 +20 10011309 . T C, . . DP=129;ExcessHet=3.01;RAW_MQandDP=464400,129 GT:AD:DP:GQ:PL:SB ./.:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 ./.:0,52,0:52:99:1458,154,0,1458,154,1458:0,0,33,19 +20 10011310 . G . . END=10011335 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:49:99:44:0,120,1800 +20 10011336 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:81:46:0,81,1313 +20 10011337 . A . . END=10011413 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:99:39:0,105,1136 +20 10011414 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:42:98:42:0,98,1172 +20 10011415 . G . . END=10011445 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:99:41:0,103,1220 +20 10011446 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:43:97:43:0,97,1261 +20 10011447 . A . . END=10011472 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:99:43:0,105,1305 +20 10011473 . T . . END=10011475 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:93:43:0,93,1395 +20 10011476 . A . . END=10011482 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:81:44:0,81,1215 +20 10011483 . A . . END=10011486 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:48:72:48:0,72,1080 +20 10011487 . T . . END=10011492 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:48:63:48:0,63,945 +20 10011493 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:57:47:0,57,855 +20 10011494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:54:47:0,54,810 +20 10011495 . T . . END=10011504 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:51:44:0,51,765 +20 10011505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:48:45:0,48,720 +20 10011506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:39:45:0,39,585 +20 10011507 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:33:44:0,33,495 +20 10011508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:30:44:0,30,450 +20 10011509 . C . . END=10011510 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:24:44:0,24,360 +20 10011511 . T . . END=10011513 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:12:46:0,12,180 +20 10011514 . A . . END=10011516 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:9:46:0,9,135 +20 10011517 . GAA GA,G,GAAA, . . BaseQRankSum=0.690;ClippingRankSum=0.00;DP=135;ExcessHet=3.01;MQRankSum=1.80;RAW_MQandDP=486210,135;ReadPosRankSum=0.315 GT:AD:DP:GQ:PL:SB ./.:37,28,2,6,0:73:99:528,0,875,611,1042,2120,604,722,1499,1648,667,966,1700,1470,1638:23,14,19,17 ./.:1,37,0,0,0:38:88:942,88,0,945,111,968,945,111,968,968,945,111,968,968,968:1,0,20,17 +20 10011518 . A *, . . DP=135 GT:AD:DP:GQ:PL:SB ./.:37,28,0:73:99:528,0,875,667,966,1638:23,14,19,17 ./.:1,37,0:38:88:942,88,0,945,111,968:1,0,20,17 +20 10011519 . A *, . . DP=139 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,28,0:73:99:.:528,0,875,667,966,1638:23,14,19,17 ./.:.:48:0:48:0,0,0,0,0,0 +20 10011520 . A . . END=10011556 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:48:99:44:0,100,1332 +20 10011557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:45:94:45:0,94,1206 +20 10011558 . A . . END=10011591 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:47:99:42:0,100,1260 +20 10011592 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:40:87:40:0,87,1145 +20 10011593 . A . . END=10011597 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:40:99:38:0,108,1227 +20 10011598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:41:67:41:0,67,1108 +20 10011599 . C . . END=10011638 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:43:99:39:0,105,1215 +20 10011639 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:42:93:42:0,93,1265 +20 10011640 . A . . END=10011661 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:44:99:39:0,101,1198 +20 10011662 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:37:78:37:0,78,1108 +20 10011663 . G . . END=10011665 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:37:99:37:0,108,1144 +20 10011666 . C T, . . DP=108;ExcessHet=3.01;RAW_MQandDP=380523,108 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 ./.:0,35,0:35:99:1140,105,0,1140,105,1140:0,0,16,19 +20 10011667 . A . . END=10011678 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:39:99:38:0,99,1168 +20 10011679 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:94:38:0,94,1136 +20 10011680 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:39:89:39:0,89,1116 +20 10011681 . T . . END=10011687 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:99:37:0,99,1485 +20 10011688 . T . . END=10011690 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:96:38:0,96,1440 +20 10011691 . A . . END=10011938 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:45:99:37:0,99,1169 +20 10011939 . C T, . . DP=103;ExcessHet=3.01;RAW_MQandDP=344243,103 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 ./.:0,42,0:42:99:1304,126,0,1304,126,1304:0,0,22,20 +20 10011940 . G . . END=10011981 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:54:99:50:0,99,1399 +20 10011982 . G . . END=10011988 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:56:90:55:0,90,1350 +20 10011989 . G . . END=10011994 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:81:54:0,81,1215 +20 10011995 . T . . END=10011996 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:58:75:58:0,75,1125 +20 10011997 . A . . END=10012004 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:59:60:57:0,60,900 +20 10012005 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:59:54:59:0,54,810 +20 10012006 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:60:48:60:0,48,720 +20 10012007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:59:42:59:0,42,630 +20 10012008 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:60:39:60:0,39,585 +20 10012009 . G . . END=10012010 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:30:55:0,30,450 +20 10012011 . T . . END=10012013 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:27:57:0,27,405 +20 10012014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:58:21:58:0,21,315 +20 10012015 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:18:57:0,18,270 +20 10012016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:6:57:0,6,90 +20 10012017 . A . . END=10012018 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:3:56:0,3,45 +20 10012019 . G . . END=10012020 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:55:0:53:0,0,0 +20 10012021 . CA C, . . DP=119;ExcessHet=3.01;RAW_MQandDP=404476,119 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 ./.:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012022 . A *, . . DP=119 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 ./.:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012023 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:38:0,99,1485 ./.:54:0:54:0,0,0 +20 10012024 . A . . END=10012147 GT:DP:GQ:MIN_DP:PL ./.:70:99:38:0,99,1485 ./.:66:99:47:0,119,1428 +20 10012148 . G . . END=10012157 GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012158 . A . . END=10012159 GT:DP:GQ:MIN_DP:PL ./.:35:84:34:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012160 . C . . END=10012162 GT:DP:GQ:MIN_DP:PL ./.:34:78:34:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012163 . G . . END=10012167 GT:DP:GQ:MIN_DP:PL ./.:34:81:33:0,81,1215 ./.:66:99:47:0,119,1428 +20 10012168 . C . . END=10012170 GT:DP:GQ:MIN_DP:PL ./.:31:78:29:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:61:29:0,61,1086 ./.:66:99:47:0,119,1428 +20 10012172 . C . . END=10012178 GT:DP:GQ:MIN_DP:PL ./.:29:72:29:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012179 . G . . END=10012188 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,1157 ./.:66:99:47:0,119,1428 +20 10012189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012190 . C . . END=10012196 GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:66:99:47:0,119,1428 +20 10012197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:93:32:0,93,1395 ./.:66:99:47:0,119,1428 +20 10012198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:66:99:47:0,119,1428 +20 10012199 . C . . END=10012200 GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:30:87:30:0,87,1305 ./.:66:99:47:0,119,1428 +20 10012202 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:62:32:0,62,1157 ./.:66:99:47:0,119,1428 +20 10012203 . C . . END=10012211 GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012212 . G . . END=10012215 GT:DP:GQ:MIN_DP:PL ./.:31:84:30:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012216 . C . . END=10012221 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012222 . T . . END=10012224 GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012225 . G . . END=10012229 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012230 . A . . END=10012234 GT:DP:GQ:MIN_DP:PL ./.:25:66:25:0,66,990 ./.:66:99:47:0,119,1428 +20 10012235 . A . . END=10012237 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:26:69:26:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012239 . G . . END=10012241 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012242 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,921 ./.:66:99:47:0,119,1428 +20 10012243 . T . . END=10012244 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012245 . C . . END=10012252 GT:DP:GQ:MIN_DP:PL ./.:25:66:24:0,66,990 ./.:66:99:47:0,119,1428 +20 10012253 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:48:24:0,48,893 ./.:66:99:47:0,119,1428 +20 10012254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,865 ./.:66:99:47:0,119,1428 +20 10012255 . C . . END=10012260 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012261 . T . . END=10012266 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012267 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:58:27:0,58,1061 ./.:66:99:47:0,119,1428 +20 10012268 . G . . END=10012277 GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:66:99:47:0,119,1428 +20 10012278 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012279 . G . . END=10012285 GT:DP:GQ:MIN_DP:PL ./.:25:69:24:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012286 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012287 . A . . END=10012299 GT:DP:GQ:MIN_DP:PL ./.:26:60:25:0,60,900 ./.:66:99:47:0,119,1428 +20 10012300 . G . . END=10012311 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,920 ./.:66:99:47:0,119,1428 +20 10012312 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:60:27:0,60,991 ./.:66:99:47:0,119,1428 +20 10012313 . G . . END=10012315 GT:DP:GQ:MIN_DP:PL ./.:27:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012316 . G . . END=10012320 GT:DP:GQ:MIN_DP:PL ./.:26:60:26:0,60,941 ./.:66:99:47:0,119,1428 +20 10012321 . G . . END=10012328 GT:DP:GQ:MIN_DP:PL ./.:27:75:27:0,75,1125 ./.:66:99:47:0,119,1428 +20 10012329 . G . . END=10012346 GT:DP:GQ:MIN_DP:PL ./.:25:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012347 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:58:24:0,58,884 ./.:66:99:47:0,119,1428 +20 10012348 . C . . END=10012351 GT:DP:GQ:MIN_DP:PL ./.:23:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:66:99:47:0,119,1428 +20 10012353 . G . . END=10012354 GT:DP:GQ:MIN_DP:PL ./.:24:51:23:0,51,765 ./.:66:99:47:0,119,1428 +20 10012355 . T . . END=10012357 GT:DP:GQ:MIN_DP:PL ./.:24:54:24:0,54,810 ./.:66:99:47:0,119,1428 +20 10012358 . G . . END=10012360 GT:DP:GQ:MIN_DP:PL ./.:23:51:23:0,51,765 ./.:66:99:47:0,119,1428 +20 10012361 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:48:23:0,48,720 ./.:66:99:47:0,119,1428 +20 10012362 . G T,A, . . DP=87;ExcessHet=3.01;RAW_MQandDP=290018,87 GT:AD:DP:GQ:PL:SB ./.:0,23,0,0:23:69:864,69,0,864,69,864,864,69,864,864:0,0,2,21 ./.:0,23,39,0:62:99:1646,970,901,677,0,562,1646,970,677,1646:0,0,29,33 +20 10012363 . G . . END=10012364 GT:DP:GQ:MIN_DP:PL ./.:22:51:21:0,51,765 ./.:57:99:55:0,120,1800 +20 10012365 . G . . END=10012372 GT:DP:GQ:MIN_DP:PL ./.:21:54:19:0,54,810 ./.:57:99:55:0,120,1800 +20 10012373 . G . . END=10012376 GT:DP:GQ:MIN_DP:PL ./.:18:51:17:0,51,616 ./.:57:99:55:0,120,1800 +20 10012377 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:57:99:55:0,120,1800 +20 10012378 . C . . . GT:DP:GQ:MIN_DP:PL ./.:18:42:18:0,42,604 ./.:57:99:55:0,120,1800 +20 10012379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:45:18:0,45,675 ./.:57:99:55:0,120,1800 +20 10012380 . G . . END=10012381 GT:DP:GQ:MIN_DP:PL ./.:18:42:18:0,42,630 ./.:57:99:55:0,120,1800 +20 10012382 . A . . END=10012383 GT:DP:GQ:MIN_DP:PL ./.:18:39:18:0,39,585 ./.:57:99:55:0,120,1800 +20 10012384 . T C, . . BaseQRankSum=-1.773e+00;DP=73;ExcessHet=3.01;MQRankSum=-8.110e-01;RAW_MQandDP=51286,18;ReadPosRankSum=0.800 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:10,8,0:18:99:.:258,0,355,288,379,667:0,10,2,6 ./.:.:57:99:55:0,120,1800,120,1800,1800 +20 10012385 . T . . END=10012386 GT:DP:GQ:MIN_DP:PL ./.:18:39:17:0,39,585 ./.:57:99:55:0,120,1800 +20 10012387 . T C, . . DP=73;ExcessHet=3.01;RAW_MQandDP=248459,73 GT:AD:DP:GQ:PL:SB ./.:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 ./.:0,56,0:56:99:1487,165,0,1487,165,1487:0,0,25,31 +20 10012388 . G . . END=10012395 GT:DP:GQ:MIN_DP:PL ./.:15:36:13:0,36,540 ./.:60:99:57:0,120,1800 +20 10012396 . G . . END=10012398 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:60:99:57:0,120,1800 +20 10012399 . G . . END=10012402 GT:DP:GQ:MIN_DP:PL ./.:16:45:15:0,45,561 ./.:60:99:57:0,120,1800 +20 10012403 . T . . . GT:DP:GQ:MIN_DP:PL ./.:15:17:15:0,17,521 ./.:60:99:57:0,120,1800 +20 10012404 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:42:14:0,42,564 ./.:60:99:57:0,120,1800 +20 10012405 . G . . END=10012409 GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012410 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:33:15:0,33,495 ./.:60:99:57:0,120,1800 +20 10012411 . C . . END=10012412 GT:DP:GQ:MIN_DP:PL ./.:15:30:14:0,30,450 ./.:60:99:57:0,120,1800 +20 10012413 . C . . END=10012416 GT:DP:GQ:MIN_DP:PL ./.:16:33:14:0,33,495 ./.:60:99:57:0,120,1800 +20 10012417 . C . . END=10012419 GT:DP:GQ:MIN_DP:PL ./.:16:36:15:0,36,540 ./.:60:99:57:0,120,1800 +20 10012420 . G . . END=10012422 GT:DP:GQ:MIN_DP:PL ./.:14:39:13:0,39,482 ./.:60:99:57:0,120,1800 +20 10012423 . G . . END=10012424 GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:60:99:57:0,120,1800 +20 10012425 . A . . END=10012426 GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012427 . C . . . GT:DP:GQ:MIN_DP:PL ./.:16:42:16:0,42,630 ./.:60:99:57:0,120,1800 +20 10012428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:17:45:17:0,45,675 ./.:60:99:57:0,120,1800 +20 10012429 . G . . END=10012431 GT:DP:GQ:MIN_DP:PL ./.:17:42:17:0,42,630 ./.:60:99:57:0,120,1800 +20 10012432 . C . . END=10012433 GT:DP:GQ:MIN_DP:PL ./.:18:45:17:0,45,675 ./.:60:99:57:0,120,1800 +20 10012434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:18:48:18:0,48,720 ./.:60:99:57:0,120,1800 +20 10012435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:51:19:0,51,765 ./.:60:99:57:0,120,1800 +20 10012436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:60:99:57:0,120,1800 +20 10012437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:57:20:0,57,855 ./.:60:99:57:0,120,1800 +20 10012438 . T . . END=10012440 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,787 ./.:60:99:57:0,120,1800 +20 10012441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012442 . A . . END=10012454 GT:DP:GQ:MIN_DP:PL ./.:22:60:21:0,60,815 ./.:60:99:57:0,120,1800 +20 10012455 . G . . END=10012456 GT:DP:GQ:MIN_DP:PL ./.:21:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012457 . G . . END=10012458 GT:DP:GQ:MIN_DP:PL ./.:22:60:22:0,60,900 ./.:60:99:57:0,120,1800 +20 10012459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:60:99:57:0,120,1800 +20 10012460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:60:99:57:0,120,1800 +20 10012461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:57:23:0,57,855 ./.:60:99:57:0,120,1800 +20 10012462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:49:23:0,49,825 ./.:60:99:57:0,120,1800 +20 10012463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:47:23:0,47,803 ./.:60:99:57:0,120,1800 +20 10012464 . A . . END=10012465 GT:DP:GQ:MIN_DP:PL ./.:22:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012466 . C . . END=10012467 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:60:99:57:0,120,1800 +20 10012468 . C . . END=10012470 GT:DP:GQ:MIN_DP:PL ./.:20:51:19:0,51,765 ./.:60:99:57:0,120,1800 +20 10012471 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:60:99:57:0,120,1800 +20 10012472 . G . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:60:99:57:0,120,1800 +20 10012473 . G . . END=10012474 GT:DP:GQ:MIN_DP:PL ./.:20:39:19:0,39,585 ./.:60:99:57:0,120,1800 +20 10012475 . C . . END=10012476 GT:DP:GQ:MIN_DP:PL ./.:20:36:19:0,36,540 ./.:60:99:57:0,120,1800 +20 10012477 . G . . END=10012478 GT:DP:GQ:MIN_DP:PL ./.:18:33:17:0,33,495 ./.:60:99:57:0,120,1800 +20 10012479 . A G, . . DP=71;ExcessHet=3.01;RAW_MQandDP=224731,71 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 ./.:0,54,0:54:99:0|1:10012479_A_G:2384,168,0,2384,168,2384:0,0,23,31 +20 10012480 . G . . END=10012482 GT:DP:GQ:MIN_DP:PL ./.:16:24:15:0,24,360 ./.:60:99:57:0,120,1800 +20 10012483 . G . . END=10012489 GT:DP:GQ:MIN_DP:PL ./.:13:27:12:0,27,405 ./.:60:99:57:0,120,1800 +20 10012490 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:22:11:0,22,359 ./.:60:99:57:0,120,1800 +20 10012491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,269 ./.:60:99:57:0,120,1800 +20 10012492 . G . . END=10012497 GT:DP:GQ:MIN_DP:PL ./.:10:27:9:0,27,304 ./.:60:99:57:0,120,1800 +20 10012498 . C G, . . DP=67;ExcessHet=3.01;RAW_MQandDP=203952,67 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 ./.:0,56,0:56:99:0|1:10012479_A_G:2544,172,0,2544,172,2544:0,0,28,28 +20 10012499 . G . . END=10012501 GT:DP:GQ:MIN_DP:PL ./.:11:27:9:0,27,334 ./.:59:99:56:0,120,1800 +20 10012502 . C . . END=10012503 GT:DP:GQ:MIN_DP:PL ./.:11:24:11:0,24,360 ./.:59:99:56:0,120,1800 +20 10012504 . C . . END=10012508 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:59:99:56:0,120,1800 +20 10012509 . A . . END=10012513 GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:59:99:56:0,120,1800 +20 10012514 . C . . END=10012515 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:59:99:56:0,120,1800 +20 10012516 . G . . END=10012517 GT:DP:GQ:MIN_DP:PL ./.:10:18:9:0,18,270 ./.:59:99:56:0,120,1800 +20 10012518 . T C, . . DP=62;ExcessHet=3.01;RAW_MQandDP=181508,62 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 ./.:0,52,0:52:99:0|1:10012479_A_G:2297,157,0,2297,157,2297:0,0,27,25 +20 10012519 . C . . END=10012520 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:56:99:54:0,99,1485 +20 10012521 . C T, . . BaseQRankSum=2.36;DP=65;ExcessHet=3.01;MQRankSum=-3.800e-02;RAW_MQandDP=19192,11;ReadPosRankSum=1.97 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:8,3,0:11:75:.:75,0,224,99,233,332:4,4,2,1 ./.:.:56:99:54:0,99,1485,99,1485,1485 +20 10012522 . A . . END=10012525 GT:DP:GQ:MIN_DP:PL ./.:11:24:9:0,24,360 ./.:56:99:54:0,99,1485 +20 10012526 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:21:8:0,21,315 ./.:56:99:54:0,99,1485 +20 10012527 . C . . . GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:56:99:54:0,99,1485 +20 10012528 . T . . END=10012529 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:53:93:52:0,93,1395 +20 10012530 . C . . END=10012531 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:54:87:53:0,87,1305 +20 10012532 . C . . END=10012536 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:53:72:51:0,72,1080 +20 10012537 . T . . END=10012542 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:53:60:51:0,60,900 +20 10012543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:50:57:50:0,57,855 +20 10012544 . C . . END=10012545 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:51:54:50:0,54,810 +20 10012546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,174 ./.:51:54:50:0,54,810 +20 10012547 . G . . . GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,207 ./.:50:48:50:0,48,720 +20 10012548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,207 ./.:51:45:50:0,45,675 +20 10012549 . C . . . GT:DP:GQ:MIN_DP:PL ./.:6:1:6:0,1,186 ./.:51:45:50:0,45,675 +20 10012550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:45:50:0,45,675 +20 10012551 . T . . END=10012552 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:42:51:0,42,630 +20 10012553 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:50:39:50:0,39,585 +20 10012554 . G . . END=10012555 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:52:36:52:0,36,540 +20 10012556 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:53:33:53:0,33,495 +20 10012557 . G . . END=10012558 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:52:30:51:0,30,450 +20 10012559 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:15:51:0,15,225 +20 10012560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:9:51:0,9,135 +20 10012561 . T . . END=10012562 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:0:50:0,0,0 +20 10012563 . G . . END=10012564 GT:DP:GQ:MIN_DP:PL ./.:8:21:8:0,21,315 ./.:51:0:50:0,0,0 +20 10012565 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,261 ./.:51:0:50:0,0,0 +20 10012566 . C . . END=10012567 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,261 ./.:51:3:50:0,3,45 +20 10012568 . G . . END=10012569 GT:DP:GQ:MIN_DP:PL ./.:9:21:8:0,21,315 ./.:51:3:50:0,3,45 +20 10012570 . G GCA, . . DP=58;ExcessHet=3.01;RAW_MQandDP=153103,58 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 ./.:0,46,0:46:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,22,24 +20 10012571 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:27:11:0,27,405 ./.:51:0:51:0,0,0 +20 10012572 . GT G, . . DP=60;ExcessHet=3.01;RAW_MQandDP=157544,60 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 ./.:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012573 . T *, . . DP=60 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 ./.:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:50:0:50:0,0,0 +20 10012575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:51:21:51:0,21,1387 +20 10012576 . T . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:52:26:52:0,26,1439 +20 10012577 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:53:28:53:0,28,1291 +20 10012578 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:53:38:53:0,38,1313 +20 10012579 . G . . END=10012581 GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:52:99:51:0,99,1485 +20 10012582 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:99:51:0,99,1485 +20 10012583 . C . . END=10012585 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:90:51:0,90,1350 +20 10012586 . C . . END=10012587 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:84:51:0,84,1260 +20 10012588 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:51:75:49:0,75,1125 +20 10012589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:51:75:49:0,75,1125 +20 10012590 . C . . END=10012591 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:51:75:49:0,75,1125 +20 10012592 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:14:14:0,14,377 ./.:50:63:49:0,63,945 +20 10012593 . C . . END=10012594 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:50:63:49:0,63,945 +20 10012595 . A . . END=10012597 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:51:57:51:0,57,855 +20 10012598 . C . . END=10012600 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:50:51:49:0,51,765 +20 10012601 . G . . END=10012602 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:50:51:49:0,51,765 +20 10012603 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:50:48:50:0,48,720 +20 10012604 . C . . END=10012605 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:51:36:50:0,36,540 +20 10012606 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:49:33:45:0,33,495 +20 10012607 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:49:33:45:0,33,495 +20 10012608 . C . . END=10012609 GT:DP:GQ:MIN_DP:PL ./.:15:42:14:0,42,545 ./.:49:33:45:0,33,495 +20 10012610 . C . . END=10012612 GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:49:33:45:0,33,495 +20 10012613 . C . . END=10012615 GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:49:30:49:0,30,450 +20 10012616 . C . . END=10012618 GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:47:24:46:0,24,360 +20 10012619 . T . . END=10012620 GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,653 ./.:47:12:47:0,12,180 +20 10012621 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,672 ./.:47:12:47:0,12,180 +20 10012622 . G . . END=10012623 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:47:3:45:0,3,45 +20 10012624 . T . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:48:0:44:0,0,0 +20 10012625 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:57:20:0,57,855 ./.:48:0:44:0,0,0 +20 10012626 . C . . END=10012630 GT:DP:GQ:MIN_DP:PL ./.:21:60:21:0,60,900 ./.:48:0:44:0,0,0 +20 10012631 . C CG, . . BaseQRankSum=-1.030e+00;DP=65;ExcessHet=3.01;MQRankSum=-1.670e+00;RAW_MQandDP=189832,65;ReadPosRankSum=-1.813e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 ./.:0,43,0:43:99:0|1:10012631_C_CG:1933,132,0,1933,132,1933:0,0,20,23 +20 10012632 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:48:0:48:0,0,0 +20 10012633 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:45:52:45:0,52,1226 +20 10012634 . C . . END=10012635 GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:46:99:45:0,114,1710 +20 10012636 . G C, . . BaseQRankSum=2.71;DP=64;ExcessHet=3.01;MQRankSum=-1.513e+00;RAW_MQandDP=187532,64;ReadPosRankSum=-1.915e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 ./.:0,41,0:41:99:0|1:10012631_C_CG:1932,132,0,1932,132,1932:0,0,19,22 +20 10012637 . A . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:45:53:45:0,53,1153 +20 10012638 . G . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:44:51:44:0,51,1203 +20 10012639 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:44:99:41:0,100,1128 +20 10012640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:44:99:41:0,100,1128 +20 10012641 . T . . END=10012651 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:44:99:41:0,100,1128 +20 10012652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:43:95:43:0,95,1320 +20 10012653 . A . . END=10012662 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:47:99:40:0,110,1146 +20 10012663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:47:99:40:0,110,1146 +20 10012664 . C . . END=10012665 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:47:99:40:0,110,1146 +20 10012666 . C . . END=10012669 GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:47:99:40:0,110,1146 +20 10012670 . G . . END=10012671 GT:DP:GQ:MIN_DP:PL ./.:23:57:23:0,57,855 ./.:47:99:40:0,110,1146 +20 10012672 . C . . END=10012675 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:47:99:40:0,110,1146 +20 10012676 . C . . END=10012685 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:47:99:40:0,110,1146 +20 10012686 . G . . END=10012687 GT:DP:GQ:MIN_DP:PL ./.:29:84:29:0,84,1260 ./.:47:99:40:0,110,1146 +20 10012688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:66:28:0,66,1001 ./.:47:99:40:0,110,1146 +20 10012689 . C . . END=10012694 GT:DP:GQ:MIN_DP:PL ./.:29:84:28:0,84,1100 ./.:47:99:40:0,110,1146 +20 10012695 . A . . END=10012700 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012701 . G . . END=10012702 GT:DP:GQ:MIN_DP:PL ./.:33:87:33:0,87,1305 ./.:47:99:40:0,110,1146 +20 10012703 . G . . END=10012706 GT:DP:GQ:MIN_DP:PL ./.:34:90:32:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012707 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:78:33:0,78,1121 ./.:47:99:40:0,110,1146 +20 10012708 . G . . END=10012713 GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012714 . G C, . . DP=79;ExcessHet=3.01;RAW_MQandDP=257587,79 GT:AD:DP:GQ:PL:SB ./.:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 ./.:0,44,0:44:99:1341,132,0,1341,132,1341:0,0,21,23 +20 10012715 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:45:99:43:0,112,1275 +20 10012716 . A . . END=10012718 GT:DP:GQ:MIN_DP:PL ./.:36:93:36:0,93,1395 ./.:45:99:43:0,112,1275 +20 10012719 . G . . END=10012722 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:45:99:43:0,112,1275 +20 10012723 . G . . END=10012725 GT:DP:GQ:MIN_DP:PL ./.:37:72:37:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012726 . A . . END=10012727 GT:DP:GQ:MIN_DP:PL ./.:38:69:37:0,69,1035 ./.:45:99:43:0,112,1275 +20 10012728 . T . . END=10012730 GT:DP:GQ:MIN_DP:PL ./.:38:72:38:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012731 . C . . END=10012732 GT:DP:GQ:MIN_DP:PL ./.:38:69:37:0,69,1035 ./.:45:99:43:0,112,1275 +20 10012733 . G . . END=10012736 GT:DP:GQ:MIN_DP:PL ./.:31:72:27:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012737 . G . . END=10012739 GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012740 . C . . END=10012742 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:45:99:43:0,112,1275 +20 10012743 . C . . END=10012746 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012747 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:78:30:0,78,1170 ./.:45:99:43:0,112,1275 +20 10012748 . A . . END=10012750 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012751 . T C, . . DP=72;ExcessHet=3.01;RAW_MQandDP=230471,72 GT:AD:DP:GQ:PL:SB ./.:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 ./.:0,42,0:42:99:1298,125,0,1298,125,1298:0,0,21,21 +20 10012752 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:74:29:0,74,1014 ./.:51:99:43:0,110,1192 +20 10012754 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:51:99:43:0,110,1192 +20 10012755 . G . . END=10012756 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,908 ./.:51:99:43:0,110,1192 +20 10012757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1093 ./.:51:99:43:0,110,1192 +20 10012758 . C . . END=10012761 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,981 ./.:51:99:43:0,110,1192 +20 10012762 . A . . END=10012766 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,949 ./.:51:99:43:0,110,1192 +20 10012767 . C . . END=10012769 GT:DP:GQ:MIN_DP:PL ./.:32:75:31:0,75,1125 ./.:51:99:43:0,110,1192 +20 10012770 . G . . END=10012772 GT:DP:GQ:MIN_DP:PL ./.:33:81:33:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012773 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:79:31:0,79,1133 ./.:51:99:43:0,110,1192 +20 10012774 . A . . END=10012779 GT:DP:GQ:MIN_DP:PL ./.:31:81:28:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012780 . G . . END=10012782 GT:DP:GQ:MIN_DP:PL ./.:32:93:32:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012783 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:86:33:0,86,1233 ./.:51:99:43:0,110,1192 +20 10012784 . G . . END=10012785 GT:DP:GQ:MIN_DP:PL ./.:34:93:33:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012786 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:69:34:0,69,1237 ./.:51:99:43:0,110,1192 +20 10012787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:93:33:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012788 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:70:32:0,70,1178 ./.:51:99:43:0,110,1192 +20 10012789 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:86:34:0,86,1298 ./.:51:99:43:0,110,1192 +20 10012790 . T . . END=10012795 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012796 . T . . END=10012797 GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012798 . G . . END=10012808 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012810 . A . . END=10012819 GT:DP:GQ:MIN_DP:PL ./.:36:90:34:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:70:35:0,70,1358 ./.:51:99:43:0,110,1192 +20 10012821 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:78:35:0,78,1329 ./.:51:99:43:0,110,1192 +20 10012823 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012825 . A . . END=10012826 GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:51:99:43:0,110,1192 +20 10012827 . C . . END=10012838 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:51:99:43:0,110,1192 +20 10012839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:92:44:0,92,1324 +20 10012840 . A . . END=10012853 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:99:38:0,100,1084 +20 10012854 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:37:98:37:0,98,1108 +20 10012855 . A . . END=10012874 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:43:99:37:0,100,1096 +20 10012875 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:98:44:0,98,1282 +20 10012876 . T . . END=10012902 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:41:99:37:0,99,1139 +20 10012903 . G . . END=10012910 GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:41:99:37:0,99,1139 +20 10012911 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:40:86:40:0,86,1133 +20 10012912 . A . . END=10012914 GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:40:99:38:0,101,1145 +20 10012915 . G . . END=10012921 GT:DP:GQ:MIN_DP:PL ./.:37:93:36:0,93,1395 ./.:40:99:38:0,101,1145 +20 10012922 . A . . END=10012926 GT:DP:GQ:MIN_DP:PL ./.:38:87:36:0,87,1305 ./.:40:99:38:0,101,1145 +20 10012927 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:79:37:0,79,1391 ./.:40:99:38:0,101,1145 +20 10012928 . C . . END=10012968 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:40:99:38:0,101,1145 +20 10012969 . G A, . . BaseQRankSum=-3.050e-01;ClippingRankSum=0.00;DP=81;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=0.498 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:99:38:0,99,1485,99,1485,1485 ./.:18,25,0:43:99:.:643,0,410,696,485,1181:9,9,11,14 +20 10012970 . A . . END=10012996 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:44:99:42:0,112,1313 +20 10012997 . C T, . . BaseQRankSum=0.991;ClippingRankSum=0.00;DP=82;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=0.206 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:99:38:0,99,1485,99,1485,1485 ./.:19,25,0:44:99:.:648,0,454,705,529,1234:8,11,11,14 +20 10012998 . A . . END=10013026 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:43:99:39:0,100,1121 +20 10013027 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:40:94:40:0,94,1127 +20 10013028 . T . . END=10013041 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:38:99:34:0,99,999 +20 10013042 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:38:97:38:0,97,1036 +20 10013043 . G . . END=10013048 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:37:99:36:0,99,1485 +20 10013049 . A . . END=10013051 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:93:35:0,93,1395 +20 10013052 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:79:32:0,79,799 +20 10013053 . G . . END=10013059 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:34:81:32:0,81,867 +20 10013060 . T . . END=10013064 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:75:30:0,75,1125 +20 10013065 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:30:0,81,1215 +20 10013066 . C . . END=10013067 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:31:78:31:0,78,1170 +20 10013068 . C . . END=10013071 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:26:78:26:0,78,794 +20 10013073 . A . . END=10013075 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:29:81:29:0,81,1215 +20 10013076 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:29:75:29:0,75,830 +20 10013077 . C . . END=10013079 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013080 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:31:70:31:0,70,869 +20 10013081 . G . . END=10013083 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013084 . C . . END=10013085 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:90:31:0,90,1350 +20 10013086 . C . . END=10013087 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:82:31:0,82,810 +20 10013088 . G . . END=10013089 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:32:0,93,1395 +20 10013090 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:78:33:0,78,975 +20 10013091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:96:33:0,96,1440 +20 10013092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:82:33:0,82,1019 +20 10013093 . A . . END=10013095 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:32:0,93,1395 +20 10013096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:87:33:0,87,969 +20 10013097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:33:0,93,1395 +20 10013098 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:87:33:0,87,971 +20 10013099 . C . . END=10013101 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:93:31:0,93,984 +20 10013102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:66:30:0,66,872 +20 10013103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:88:33:0,88,1038 +20 10013104 . G . . END=10013108 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:99:33:0,99,1049 +20 10013109 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:86:35:0,86,1058 +20 10013110 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:36:99:36:0,99,1485 +20 10013111 . G . . END=10013115 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:96:32:0,96,1006 +20 10013116 . G . . END=10013117 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:99:33:0,99,1032 +20 10013118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:87:35:0,87,1019 +20 10013119 . C T, . . BaseQRankSum=2.72;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.131;RAW_MQandDP=273922,92;ReadPosRankSum=0.159 GT:AD:DP:GQ:PL:SB ./.:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 ./.:15,18,0:33:99:454,0,354,499,407,906:8,7,6,12 +20 10013120 . A . . END=10013121 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,102,1083 +20 10013122 . A . . END=10013136 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:31:0,90,1350 +20 10013137 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:80:32:0,80,967 +20 10013138 . A . . END=10013150 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:30:0,90,966 +20 10013151 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:87:34:0,87,1005 +20 10013152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10013153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10013154 . C . . END=10013155 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:96:33:0,96,1440 +20 10013156 . G . . END=10013157 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10013158 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:98:33:0,98,989 +20 10013159 . G . . END=10013160 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:34:0,102,1003 +20 10013161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:37:0,90,1060 +20 10013162 . A . . END=10013181 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:36:0,105,1034 +20 10013182 . A . . END=10013183 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:92:38:0,92,1108 +20 10013184 . A . . END=10013186 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:37:0,100,1130 +20 10013187 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:97:38:0,97,1095 +20 10013188 . T . . END=10013197 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:36:0,102,1077 +20 10013198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:85:34:0,85,990 +20 10013199 . T . . END=10013202 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:35:0,99,1045 +20 10013203 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:97:36:0,97,1062 +20 10013204 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10013205 . C . . END=10013207 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10013208 . T . . END=10013213 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:33:0,99,992 +20 10013214 . C . . END=10013215 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:91:32:0,91,993 +20 10013216 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10013217 . T . . END=10013218 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10013219 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10013220 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:84:36:0,84,1016 +20 10013221 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:96:37:0,96,1440 +20 10013222 . C . . END=10013223 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:87:37:0,87,1305 +20 10013224 . T . . END=10013225 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:36:0,90,1350 +20 10013226 . C . . END=10013231 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:81:33:0,81,1215 +20 10013232 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:70:33:0,70,914 +20 10013233 . T . . END=10013234 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:81:31:0,81,1215 +20 10013235 . A . . END=10013243 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:74:26:0,74,810 +20 10013244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,821 +20 10013245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:65:27:0,65,762 +20 10013246 . C . . END=10013248 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:75:25:0,75,769 +20 10013249 . C . . END=10013250 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:28:0,81,1215 +20 10013251 . C . . END=10013254 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:75:27:0,75,1125 +20 10013255 . T . . END=10013262 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:80:29:0,80,919 +20 10013263 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:62:28:0,62,836 +20 10013264 . C . . END=10013273 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:28:0,81,900 +20 10013274 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:67:30:0,67,876 +20 10013275 . A . . END=10013279 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:27:0,81,797 +20 10013280 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:78:26:0,78,737 +20 10013281 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:69:28:0,69,800 +20 10013282 . A . . END=10013283 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:28:0,81,810 +20 10013284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:71:29:0,71,795 +20 10013285 . T . . END=10013288 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:29:0,84,1260 +20 10013289 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:55:30:0,55,878 +20 10013290 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:30:0,84,1260 +20 10013291 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:55:30:0,55,847 +20 10013292 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:39:29:0,39,770 +20 10013293 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:78:29:0,78,1170 +20 10013294 . T . . END=10013296 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:30:0,81,1215 +20 10013297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:75:30:0,75,1125 +20 10013298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:56:29:0,56,823 +20 10013299 . C . . END=10013301 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:72:30:0,72,1080 +20 10013302 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:63:31:0,63,833 +20 10013303 . A . . END=10013322 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:72:25:0,72,687 +20 10013323 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:58:25:0,58,716 +20 10013324 . C . . END=10013327 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:75:25:0,75,748 +20 10013328 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:37:27:0,37,750 +20 10013329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,821 +20 10013330 . G . . END=10013338 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:70:27:0,70,776 +20 10013339 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:67:26:0,67,725 +20 10013340 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:75:27:0,75,1125 +20 10013341 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:59:25:0,59,684 +20 10013342 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:50:26:0,50,628 +20 10013343 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:45:26:0,45,675 +20 10013344 . T . . END=10013348 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:72:24:0,72,680 +20 10013349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:67:26:0,67,714 +20 10013350 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:45:26:0,45,726 +20 10013351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:72:26:0,72,1080 +20 10013352 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:23:35:23:0,35,564 +20 10013353 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:23:69:23:0,69,619 +20 10013354 . C . . END=10013355 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:75:25:0,75,679 +20 10013356 . G . . END=10013361 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:66:22:0,66,589 +20 10013362 . A . . END=10013364 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:72:28:0,72,1080 +20 10013365 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:53:29:0,53,808 +20 10013366 . C . . END=10013386 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:72:25:0,72,733 +20 10013387 . T . . END=10013389 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,804 +20 10013390 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:24:72:24:0,72,737 +20 10013391 . C . . END=10013392 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:80:27:0,80,767 +20 10013393 . G . . END=10013396 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:78:26:0,78,788 +20 10013397 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,816 +20 10013398 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:70:27:0,70,786 +20 10013399 . C . . END=10013407 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:29:0,81,1215 +20 10013408 . C . . END=10013409 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:32:0,90,1350 +20 10013410 . G . . END=10013413 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:81:31:0,81,1215 +20 10013414 . G . . END=10013415 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:32:0,90,1350 +20 10013416 . C . . END=10013421 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:82:30:0,82,901 +20 10013422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:72:30:0,72,895 +20 10013423 . C . . END=10013428 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:27:0,81,833 +20 10013429 . A . . END=10013430 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:77:30:0,77,855 +20 10013431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:57:30:0,57,829 +20 10013432 . A . . END=10013433 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:28:0,81,1215 +20 10013434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:90:32:0,90,1350 +20 10013435 . A . . END=10013436 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:81:31:0,81,935 +20 10013437 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:47:32:0,47,885 +20 10013438 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:39:32:0,39,823 +20 10013439 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:67:32:0,67,916 +20 10013440 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:46:32:0,46,844 +20 10013441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:33:0,90,1350 +20 10013442 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:54:33:0,54,925 +20 10013443 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:64:32:0,64,907 +20 10013444 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:27:31:0,27,789 +20 10013445 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,1260 +20 10013446 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:69:32:0,69,933 +20 10013447 . A . . END=10013454 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:29:0,84,1260 +20 10013455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:52:29:0,52,743 +20 10013456 . A . . END=10013459 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:30:0,84,1260 +20 10013460 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:64:29:0,64,844 +20 10013461 . C . . END=10013480 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:28:0,81,854 +20 10013481 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:63:31:0,63,923 +20 10013482 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:90:30:0,90,923 +20 10013483 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:53:29:0,53,769 +20 10013484 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:87:29:0,87,820 +20 10013485 . C . . END=10013486 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:92:31:0,92,932 +20 10013487 . A . . END=10013488 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1017 +20 10013489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:68:34:0,68,1014 +20 10013490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1090 +20 10013491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:91:34:0,91,1049 +20 10013492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1111 +20 10013493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:94:35:0,94,1100 +20 10013494 . G . . END=10013502 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:34:0,99,1080 +20 10013503 . C . . END=10013506 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:93:37:0,93,1395 +20 10013507 . C . . END=10013508 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:87:35:0,87,1305 +20 10013509 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:90:36:0,90,1350 +20 10013510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:74:36:0,74,1023 +20 10013511 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:99:37:0,99,1485 +20 10013512 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:56:36:0,56,950 +20 10013513 . G . . END=10013519 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,99,1055 +20 10013520 . C . . END=10013521 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:73:33:0,73,980 +20 10013522 . T . . END=10013573 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:48:99:35:0,105,1074 +20 10013574 . G A, . . BaseQRankSum=3.47;DP=104;ExcessHet=3.01;MQRankSum=-2.710e-01;RAW_MQandDP=232598,69;ReadPosRankSum=0.706 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:38,31,0:69:99:.:1079,0,1301,1194,1394,2588:15,23,7,24 ./.:.:48:99:35:0,105,1074,105,1074,1074 +20 10013575 . T . . END=10013696 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:99:35:0,105,1074 +20 10013697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:94:46:0,94,1320 +20 10013698 . T . . END=10013730 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:40:0,99,1239 +20 10013731 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:95:42:0,95,1317 +20 10013732 . C . . END=10013754 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:40:0,111,1192 +20 10013755 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:88:41:0,88,1234 +20 10013756 . C . . END=10013805 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:38:0,102,1200 +20 10013806 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:98:39:0,98,1173 +20 10013807 . T . . END=10013813 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:99:36:0,102,1119 +20 10013814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:98:39:0,98,1170 +20 10013815 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:38:99:38:0,111,1665 +20 10013816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:38:71:38:0,71,1106 +20 10013817 . A . . END=10013818 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:99:38:0,111,1665 +20 10013819 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:97:39:0,97,1204 +20 10013820 . T . . END=10013842 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:40:99:39:0,105,1181 +20 10013843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:68:42:0,68,1214 +20 10013844 . G . . END=10013912 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:39:0,107,1199 +20 10013913 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:97:43:0,97,1293 +20 10013914 . A . . END=10013922 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:40:0,108,1294 +20 10013923 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:95:41:0,95,1270 +20 10013924 . A . . END=10013982 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:99:36:0,99,1199 +20 10013983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:84:39:0,84,1128 +20 10013984 . A . . END=10014081 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:36:0,106,1114 +20 10014082 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:47:95:47:0,95,1287 +20 10014083 . A . . END=10014332 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:99:41:0,102,1280 +20 10014333 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:96:48:0,96,1341 +20 10014334 . G . . END=10014412 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:51:99:45:0,109,1391 +20 10014413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:54:93:54:0,93,1564 +20 10014414 . T . . END=10014423 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:49:99:47:0,117,1395 +20 10014424 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:95:48:0,95,1430 +20 10014425 . T . . END=10014480 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:99:43:0,101,1303 +20 10014481 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:45:89:45:0,89,1257 +20 10014482 . T . . END=10014493 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:99:44:0,105,1331 +20 10014494 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:44:78:44:0,78,1281 +20 10014495 . T . . END=10014510 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:41:0,120,1800 +20 10014511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:40:95:40:0,95,1204 +20 10014512 . T . . END=10014589 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:47:99:40:0,104,1206 +20 10014590 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1625 ./.:47:99:40:0,104,1206 +20 10014591 . T . . END=10014753 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:47:99:40:0,104,1206 +20 10014754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:43:98:43:0,98,1290 +20 10014755 . C . . END=10014760 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:42:99:40:0,117,1755 +20 10014761 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:39:87:39:0,87,1185 +20 10014762 . C . . END=10014911 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:42:99:38:0,99,1175 +20 10014912 . T . . END=10014914 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:96:37:0,96,1440 +20 10014915 . C . . END=10014934 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:99:34:0,102,1102 +20 10014935 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:36:87:36:0,87,1114 +20 10014936 . G . . END=10014947 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:36:99:35:0,99,1108 +20 10014948 . T . . END=10014949 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:35:90:34:0,90,1350 +20 10014950 . C . . END=10014962 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:81:32:0,81,1063 +20 10014963 . G . . END=10014970 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:33:72:31:0,72,1080 +20 10014971 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:62:34:0,62,958 +20 10014972 . A . . END=10014973 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:72:33:0,72,1080 +20 10014974 . A . . END=10014978 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:63:31:0,63,945 +20 10014979 . G . . END=10014980 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:35:54:34:0,54,810 +20 10014981 . A . . END=10014982 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:37:57:37:0,57,855 +20 10014983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:54:38:0,54,810 +20 10014984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:51:38:0,51,765 +20 10014985 . A . . END=10014987 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:54:37:0,54,810 +20 10014988 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:42:38:0,42,630 +20 10014989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:39:38:0,39,585 +20 10014990 . C CAT, . . BaseQRankSum=1.93;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=3.11;RAW_MQandDP=452269,123;ReadPosRankSum=0.144 GT:AD:DP:GQ:PL:SB ./.:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 ./.:12,22,0:34:99:735,0,363,772,429,1201:3,9,10,12 +20 10014991 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:0:38:0,0,0 +20 10014992 . T . . END=10014993 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:35:0,99,1485 +20 10014994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:83:35:0,83,1046 +20 10014995 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:73:35:0,73,1032 +20 10014996 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:89:35:0,89,1084 +20 10014997 . A . . END=10014998 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:99:35:0,99,1485 +20 10014999 . A . . END=10015002 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:32:0,90,1350 +20 10015003 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:87:34:0,87,1305 +20 10015004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:35:0,90,1350 +20 10015005 . A . . END=10015015 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:30:0,81,1215 +20 10015016 . T . . END=10015017 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:78:28:0,78,1170 +20 10015018 . T . . END=10015023 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:81:30:0,81,1215 +20 10015024 . A . . END=10015025 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:76:31:0,76,896 +20 10015026 . T . . END=10015034 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:28:0,81,1215 +20 10015035 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:28:72:28:0,72,811 +20 10015036 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:29:0,84,1260 +20 10015037 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:76:29:0,76,792 +20 10015038 . A . . END=10015039 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:28:0,81,819 +20 10015040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:74:30:0,74,866 +20 10015041 . A . . END=10015045 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:28:0,84,832 +20 10015046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:60:30:0,60,841 +20 10015047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:78:30:0,78,883 +20 10015048 . T . . END=10015052 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:87:29:0,87,842 +20 10015053 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:72:29:0,72,847 +20 10015054 . T . . END=10015056 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:29:0,81,855 +20 10015057 . T . . END=10015059 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:28:78:28:0,78,1170 +20 10015060 . G . . END=10015067 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:29:0,81,1215 +20 10015068 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10015069 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:75:31:0,75,891 +20 10015070 . A . . END=10015071 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015072 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:76:32:0,76,928 +20 10015073 . T . . END=10015074 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:32:0,90,1350 +20 10015075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:82:33:0,82,960 +20 10015076 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:90:33:0,90,1350 +20 10015077 . G . . END=10015078 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:87:33:0,87,1305 +20 10015079 . G . . END=10015084 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:93:32:0,93,1395 +20 10015085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:76:34:0,76,995 +20 10015086 . A . . END=10015092 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:31:0,90,1350 +20 10015093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:80:32:0,80,941 +20 10015094 . G . . END=10015097 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:31:0,90,1350 +20 10015098 . T . . END=10015100 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:87:31:0,87,1305 +20 10015101 . T . . END=10015106 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:90:32:0,90,1350 +20 10015107 . T . . END=10015109 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:33:0,99,1030 +20 10015110 . A . . END=10015111 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015112 . G . . END=10015113 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:84:31:0,84,1260 +20 10015114 . C . . END=10015122 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:33:0,90,1350 +20 10015123 . A . . END=10015124 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:99:33:0,99,1032 +20 10015125 . G . . END=10015130 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,971 +20 10015131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:81:33:0,81,971 +20 10015132 . C . . END=10015136 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015137 . T . . END=10015147 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:34:0,99,1057 +20 10015148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:79:38:0,79,1106 +20 10015149 . T . . END=10015153 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:99:37:0,108,1620 +20 10015154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:39:90:39:0,90,1194 +20 10015155 . T . . END=10015158 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:37:0,99,1485 +20 10015159 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:98:38:0,98,1209 +20 10015160 . A . . END=10015161 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:99:38:0,99,1485 +20 10015162 . T . . END=10015181 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:90:31:0,90,1010 +20 10015182 . C . . END=10015183 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:34:0,99,1485 +20 10015184 . A . . END=10015190 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015191 . G . . END=10015193 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:34:0,99,1485 +20 10015194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:96:32:0,96,1019 +20 10015195 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:86:33:0,86,980 +20 10015196 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:96:32:0,96,953 +20 10015197 . A . . END=10015198 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:99:33:0,99,994 +20 10015199 . A . . END=10015200 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:83:33:0,83,1014 +20 10015202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:96:34:0,96,1440 +20 10015203 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:79:34:0,79,984 +20 10015204 . C . . END=10015208 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:90:33:0,90,1350 +20 10015209 . A . . END=10015219 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:84:30:0,84,1260 +20 10015220 . G . . END=10015222 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:78:29:0,78,1170 +20 10015223 . T . . END=10015227 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:81:30:0,81,1215 +20 10015228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:67:31:0,67,891 +20 10015229 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:74:31:0,74,896 +20 10015230 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:69:29:0,69,847 +20 10015231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:73:29:0,73,871 +20 10015232 . G . . END=10015236 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:28:0,84,862 +20 10015237 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:69:29:0,69,822 +20 10015238 . A . . END=10015239 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:87:29:0,87,892 +20 10015240 . T . . END=10015247 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:30:0,90,924 +20 10015248 . C . . END=10015253 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:81:32:0,81,1027 +20 10015254 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:74:35:0,74,1003 +20 10015255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:87:35:0,87,1305 +20 10015256 . T . . END=10015258 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:32:0,90,1350 +20 10015259 . T . . END=10015269 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:28:0,81,1215 +20 10015270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:79:32:0,79,901 +20 10015271 . T . . END=10015290 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:81:29:0,81,880 +20 10015291 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:90:31:0,90,1350 +20 10015292 . A . . END=10015293 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:87:29:0,87,917 +20 10015294 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:78:31:0,78,961 +20 10015295 . T . . END=10015301 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10015302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:63:31:0,63,871 +20 10015303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015304 . A . . END=10015311 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:99:33:0,99,1039 +20 10015312 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:85:37:0,85,1132 +20 10015313 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:98:37:0,98,1148 +20 10015314 . T . . END=10015316 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,102,1530 +20 10015317 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:93:37:0,93,1113 +20 10015318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:84:37:0,84,1101 +20 10015319 . A . . END=10015322 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:96:36:0,96,1440 +20 10015323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,99,1485 +20 10015324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:94:37:0,94,1139 +20 10015325 . C . . END=10015327 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,102,1530 +20 10015328 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:92:36:0,92,1078 +20 10015329 . A . . END=10015330 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:35:0,102,1530 +20 10015331 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:97:36:0,97,1106 +20 10015332 . T . . END=10015338 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,99,1090 +20 10015339 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:76:37:0,76,1055 +20 10015340 . G . . END=10015342 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,100,1085 +20 10015343 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:94:35:0,94,1019 +20 10015344 . T . . END=10015348 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,102,1102 +20 10015349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:98:38:0,98,1161 +20 10015350 . G . . END=10015385 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:40:99:37:0,100,1049 +20 10015386 . G . . END=10015388 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:40:99:37:0,100,1049 +20 10015389 . A . . END=10015390 GT:DP:GQ:MIN_DP:PL ./.:38:81:38:0,81,1215 ./.:40:99:37:0,100,1049 +20 10015391 . G . . END=10015392 GT:DP:GQ:MIN_DP:PL ./.:37:78:36:0,78,1170 ./.:40:99:37:0,100,1049 +20 10015393 . G . . END=10015399 GT:DP:GQ:MIN_DP:PL ./.:36:81:34:0,81,1215 ./.:40:99:37:0,100,1049 +20 10015400 . G . . END=10015402 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:40:99:37:0,100,1049 +20 10015403 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:38:97:38:0,97,1098 +20 10015404 . A . . END=10015406 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:38:99:35:0,99,1142 +20 10015407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:38:99:35:0,99,1142 +20 10015408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:38:99:35:0,99,1142 +20 10015409 . G . . END=10015410 GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:38:99:35:0,99,1142 +20 10015411 . G . . END=10015415 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:38:99:35:0,99,1142 +20 10015416 . G . . END=10015420 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,844 ./.:38:99:35:0,99,1142 +20 10015421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:38:28:0,38,931 ./.:38:99:35:0,99,1142 +20 10015422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:75:27:0,75,1125 ./.:40:81:40:0,81,1107 +20 10015423 . A . . END=10015427 GT:DP:GQ:MIN_DP:PL ./.:30:75:27:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015428 . C . . END=10015429 GT:DP:GQ:MIN_DP:PL ./.:30:69:29:0,69,1035 ./.:39:99:34:0,102,1067 +20 10015430 . A . . END=10015434 GT:DP:GQ:MIN_DP:PL ./.:31:72:30:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015435 . G . . END=10015442 GT:DP:GQ:MIN_DP:PL ./.:27:60:26:0,60,900 ./.:39:99:34:0,102,1067 +20 10015443 . C . . END=10015444 GT:DP:GQ:MIN_DP:PL ./.:30:72:29:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015445 . G . . END=10015446 GT:DP:GQ:MIN_DP:PL ./.:29:69:28:0,69,1035 ./.:39:99:34:0,102,1067 +20 10015447 . G . . END=10015450 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015451 . C . . END=10015452 GT:DP:GQ:MIN_DP:PL ./.:29:81:28:0,81,1215 ./.:39:99:34:0,102,1067 +20 10015453 . C . . END=10015457 GT:DP:GQ:MIN_DP:PL ./.:27:75:27:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015458 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:27:0,57,940 ./.:39:99:34:0,102,1067 +20 10015459 . A . . END=10015460 GT:DP:GQ:MIN_DP:PL ./.:27:75:26:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:39:99:34:0,102,1067 +20 10015462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:37:94:37:0,94,1114 +20 10015463 . C . . END=10015467 GT:DP:GQ:MIN_DP:PL ./.:32:93:31:0,93,1159 ./.:37:99:36:0,108,1008 +20 10015468 . C . . END=10015469 GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:37:99:36:0,108,1008 +20 10015470 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:37:98:37:0,98,1118 +20 10015471 . A . . END=10015472 GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:38:99:37:0,99,1485 +20 10015473 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:96:33:0,96,1440 ./.:38:99:37:0,99,1485 +20 10015474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:82:33:0,82,1161 ./.:38:99:37:0,99,1485 +20 10015475 . A . . END=10015478 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1145 ./.:36:95:36:0,95,1065 +20 10015479 . C . . END=10015499 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1145 ./.:38:99:35:0,99,1046 +20 10015500 . C . . END=10015504 GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1240 ./.:38:99:35:0,99,1046 +20 10015505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:61:32:0,61,1132 ./.:38:99:35:0,99,1046 +20 10015506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:81:32:0,81,1215 ./.:38:99:35:0,99,1046 +20 10015507 . C . . END=10015513 GT:DP:GQ:MIN_DP:PL ./.:30:72:29:0,72,1080 ./.:38:99:35:0,99,1046 +20 10015514 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:35:93:35:0,93,1071 +20 10015515 . G . . END=10015522 GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:37:99:35:0,102,1077 +20 10015523 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,855 ./.:37:93:37:0,93,1395 +20 10015524 . G . . END=10015527 GT:DP:GQ:MIN_DP:PL ./.:23:51:23:0,51,765 ./.:35:66:32:0,66,990 +20 10015528 . G . . END=10015532 GT:DP:GQ:MIN_DP:PL ./.:24:54:22:0,54,810 ./.:35:66:32:0,66,990 +20 10015533 . G . . END=10015534 GT:DP:GQ:MIN_DP:PL ./.:20:48:20:0,48,720 ./.:35:66:32:0,66,990 +20 10015535 . A . . . GT:DP:GQ:MIN_DP:PL ./.:20:45:20:0,45,675 ./.:35:66:32:0,66,990 +20 10015536 . G . . END=10015546 GT:DP:GQ:MIN_DP:PL ./.:18:33:15:0,33,495 ./.:31:36:30:0,36,540 +20 10015547 . GGGCGGAGGCGGAGGCGGA G, . . BaseQRankSum=-6.510e-01;ClippingRankSum=0.00;DP=46;ExcessHet=3.01;MQRankSum=-8.130e-01;RAW_MQandDP=114200,31;ReadPosRankSum=-4.540e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:15:24:15:.:.:0,24,360,24,360,360 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015548 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015549 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015550 . C *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015551 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015552 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015553 . A *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015554 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015555 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015556 . C *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015557 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015558 . GA G, . . BaseQRankSum=2.93;ClippingRankSum=0.00;DP=35;ExcessHet=3.01;MQRankSum=1.30;RAW_MQandDP=107000,29;ReadPosRankSum=1.42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:12,16,0:28:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015559 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:12,16,0:28:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015560 . GGCGGAGGCGGA G, . . BaseQRankSum=2.91;ClippingRankSum=0.00;DP=36;ExcessHet=3.01;MQRankSum=1.35;RAW_MQandDP=110600,30;ReadPosRankSum=1.70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015561 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015562 . C *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015563 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015564 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015565 . A *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015566 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015567 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015568 . C *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015569 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015570 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015571 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015572 . G . . END=10015579 GT:DP:GQ:MIN_DP:PL ./.:5:3:5:0,3,45 ./.:29:69:28:0,69,1035 +20 10015580 . C . . . GT:DP:GQ:MIN_DP:PL ./.:5:3:5:0,3,45 ./.:28:72:26:0,72,1080 +20 10015581 . G . . END=10015587 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:28:72:26:0,72,1080 +20 10015588 . G . . . GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:26:47:26:0,47,774 +20 10015589 . A . . END=10015590 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:25:42:24:0,42,700 +20 10015591 . G . . END=10015595 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:25:72:24:0,72,732 +20 10015596 . G . . END=10015598 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:29:84:28:0,84,836 +20 10015599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,109 ./.:29:84:28:0,84,836 +20 10015600 . G . . END=10015603 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,166 ./.:32:90:30:0,90,881 +20 10015604 . C . . END=10015610 GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,158 ./.:32:90:30:0,90,881 +20 10015611 . C . . END=10015614 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,193 ./.:32:90:30:0,90,881 +20 10015615 . C . . . GT:DP:GQ:MIN_DP:PL ./.:7:21:7:0,21,279 ./.:32:90:30:0,90,881 +20 10015616 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:33:79:33:0,79,987 +20 10015617 . A . . END=10015621 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,254 ./.:33:93:31:0,93,922 +20 10015622 . G . . END=10015623 GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,329 ./.:33:93:31:0,93,922 +20 10015624 . A . . END=10015630 GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,347 ./.:33:93:31:0,93,922 +20 10015631 . G . . END=10015632 GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,347 ./.:35:99:33:0,99,990 +20 10015633 . T . . END=10015637 GT:DP:GQ:MIN_DP:PL ./.:12:36:12:0,36,471 ./.:35:99:33:0,99,990 +20 10015638 . C . . END=10015641 GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:36:93:35:0,93,1395 +20 10015642 . C . . END=10015652 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:34:81:32:0,81,1215 +20 10015653 . T . . . GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:32:74:32:0,74,974 +20 10015654 . G . . END=10015656 GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:33:84:31:0,84,1260 +20 10015657 . T . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:32:73:32:0,73,971 +20 10015658 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:32:87:31:0,87,1305 +20 10015659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:32:87:31:0,87,1305 +20 10015660 . C . . END=10015661 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:32:90:31:0,90,938 +20 10015662 . G . . END=10015668 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:32:90:31:0,90,938 +20 10015669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:33:88:33:0,88,1000 +20 10015670 . C . . END=10015673 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:34:96:34:0,96,1440 +20 10015674 . C . . END=10015675 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:36:99:35:0,99,1485 +20 10015676 . G . . END=10015678 GT:DP:GQ:MIN_DP:PL ./.:11:27:11:0,27,405 ./.:36:99:35:0,99,1485 +20 10015679 . C T, . . BaseQRankSum=1.79;ClippingRankSum=0.00;DP=43;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=157400,43;ReadPosRankSum=0.497 GT:AD:DP:GQ:PL:SB ./.:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 ./.:22,11,0:33:99:241,0,808,310,841,1150:11,11,8,3 +20 10015680 . G . . END=10015683 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:36:99:35:0,105,1051 +20 10015684 . C . . END=10015687 GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:36:99:35:0,105,1051 +20 10015688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,292 ./.:38:97:38:0,97,1088 +20 10015689 . G . . END=10015690 GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,292 ./.:39:99:37:0,108,1620 +20 10015691 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:39:99:37:0,108,1620 +20 10015692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:39:92:39:0,92,1165 +20 10015693 . T . . END=10015701 GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:39:99:36:0,108,1000 +20 10015702 . C . . END=10015703 GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:39:99:36:0,108,1000 +20 10015704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:37:95:37:0,95,1119 +20 10015705 . C . . END=10015707 GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:38:99:38:0,105,1112 +20 10015708 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:38:99:38:0,105,1112 +20 10015709 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:38:99:38:0,105,1112 +20 10015710 . G . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:38:97:38:0,97,992 +20 10015711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:41:99:41:0,111,1665 +20 10015712 . T . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:41:94:41:0,94,1174 +20 10015713 . C . . END=10015714 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:40:99:39:0,111,1101 +20 10015715 . C . . END=10015716 GT:DP:GQ:MIN_DP:PL ./.:13:33:13:0,33,495 ./.:40:99:39:0,111,1101 +20 10015717 . T . . END=10015723 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:40:99:39:0,111,1101 +20 10015724 . G . . END=10015725 GT:DP:GQ:MIN_DP:PL ./.:13:33:12:0,33,495 ./.:40:99:39:0,111,1101 +20 10015726 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:21:12:0,21,330 ./.:40:99:39:0,111,1101 +20 10015727 . C . . END=10015728 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:40:99:39:0,111,1101 +20 10015729 . C A, . . BaseQRankSum=1.28;ClippingRankSum=0.00;DP=52;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=-1.448e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:15:42:15:0,42,630,42,630,630 ./.:13,24,0:37:99:.:600,0,373,638,444,1083:10,3,11,13 +20 10015730 . G . . END=10015732 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:43:99:41:0,117,1249 +20 10015733 . T . . END=10015734 GT:DP:GQ:MIN_DP:PL ./.:16:45:16:0,45,675 ./.:43:99:41:0,117,1249 +20 10015735 . C . . END=10015736 GT:DP:GQ:MIN_DP:PL ./.:16:39:16:0,39,585 ./.:43:99:41:0,117,1249 +20 10015737 . G . . . GT:DP:GQ:MIN_DP:PL ./.:16:42:16:0,42,630 ./.:43:99:41:0,117,1249 +20 10015738 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:45:17:0,45,675 ./.:43:99:41:0,117,1249 +20 10015739 . G . . . GT:DP:GQ:MIN_DP:PL ./.:16:48:16:0,48,558 ./.:43:99:41:0,117,1249 +20 10015740 . G . . END=10015742 GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:43:99:41:0,117,1249 +20 10015743 . C . . END=10015747 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:43:99:41:0,117,1249 +20 10015748 . G . . END=10015752 GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,608 ./.:43:99:41:0,117,1249 +20 10015753 . T . . END=10015760 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,757 ./.:43:99:41:0,117,1249 +20 10015761 . T C, . . BaseQRankSum=-1.982e+00;DP=61;ExcessHet=3.01;MQRankSum=1.29;RAW_MQandDP=216841,61;ReadPosRankSum=1.81 GT:AD:DP:GQ:PL:SB ./.:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 ./.:0,39,0:39:99:1395,117,0,1395,117,1395:0,0,20,19 +20 10015762 . A . . END=10015766 GT:DP:GQ:MIN_DP:PL ./.:23:66:22:0,66,839 ./.:47:99:40:0,107,1212 +20 10015767 . C . . END=10015769 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:47:99:40:0,107,1212 +20 10015770 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:47:99:40:0,107,1212 +20 10015771 . C . . END=10015773 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015774 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:47:99:40:0,107,1212 +20 10015775 . C . . END=10015779 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1350 ./.:47:99:40:0,107,1212 +20 10015780 . C . . END=10015851 GT:DP:GQ:MIN_DP:PL ./.:43:99:36:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:45:77:45:0,77,1567 ./.:47:99:40:0,107,1212 +20 10015853 . C . . END=10015855 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015856 . A . . END=10015857 GT:DP:GQ:MIN_DP:PL ./.:41:94:41:0,94,1440 ./.:47:99:40:0,107,1212 +20 10015858 . G . . END=10015859 GT:DP:GQ:MIN_DP:PL ./.:42:99:41:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015860 . C . . END=10015861 GT:DP:GQ:MIN_DP:PL ./.:42:90:42:0,90,1350 ./.:47:99:40:0,107,1212 +20 10015862 . C . . END=10015865 GT:DP:GQ:MIN_DP:PL ./.:41:81:38:0,81,1215 ./.:47:99:40:0,107,1212 +20 10015866 . T . . END=10015867 GT:DP:GQ:MIN_DP:PL ./.:38:72:37:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015868 . G . . END=10015885 GT:DP:GQ:MIN_DP:PL ./.:27:63:23:0,63,945 ./.:47:99:40:0,107,1212 +20 10015886 . G . . END=10015889 GT:DP:GQ:MIN_DP:PL ./.:27:72:25:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015890 . A . . END=10015895 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:47:99:40:0,107,1212 +20 10015896 . G . . END=10015907 GT:DP:GQ:MIN_DP:PL ./.:34:90:30:0,90,1180 ./.:47:99:40:0,107,1212 +20 10015908 . C . . END=10015977 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015978 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:97:37:0,97,1135 +20 10015979 . G . . END=10015986 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:35:0,99,1118 +20 10015987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:87:38:0,87,1138 +20 10015988 . A . . END=10015991 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:96:35:0,96,1440 +20 10015992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:37:0,99,1485 +20 10015993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:96:35:0,96,1440 +20 10015994 . C . . END=10016014 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:35:0,99,1030 +20 10016015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:87:36:0,87,1088 +20 10016016 . C . . END=10016018 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:36:0,99,1485 +20 10016019 . C . . END=10016020 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:96:36:0,96,1440 +20 10016021 . C . . END=10016022 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:37:0,99,1485 +20 10016023 . A . . END=10016026 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:90:35:0,90,1350 +20 10016027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:84:34:0,84,1260 +20 10016028 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:75:34:0,75,1007 +20 10016029 . T . . END=10016030 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1305 +20 10016031 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:35:0,90,1350 +20 10016032 . A . . END=10016034 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:33:0,87,983 +20 10016035 . C . . END=10016041 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:31:0,90,992 +20 10016042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:77:32:0,77,960 +20 10016043 . C . . END=10016046 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:96:32:0,96,992 +20 10016047 . A . . END=10016048 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:99:34:0,102,1071 +20 10016049 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:34:0,90,1012 +20 10016050 . T . . END=10016056 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1093 +20 10016057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:83:36:0,83,1107 +20 10016058 . G . . END=10016062 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:99:34:0,102,1054 +20 10016063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:92:35:0,92,1103 +20 10016064 . A . . END=10016084 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:35:0,99,1485 +20 10016085 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:96:40:0,96,1238 +20 10016086 . G . . END=10016206 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:53:99:38:0,106,1212 +20 10016207 . C G, . . BaseQRankSum=1.27;ClippingRankSum=0.00;DP=93;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=208800,58;ReadPosRankSum=-1.090e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:35:0,99,1485,99,1485,1485 ./.:30,28,0:58:99:.:688,0,722,778,806,1583:11,19,15,13 +20 10016208 . T . . END=10016403 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:47:99:39:0,106,1245 +20 10016404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:91:38:0,91,1136 +20 10016405 . T . . END=10016424 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:99:37:0,99,1145 +20 10016425 . T . . END=10016431 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:35:0,93,1395 +20 10016432 . A . . END=10016442 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:35:0,99,1142 +20 10016443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:36:0,93,1102 +20 10016444 . C . . END=10016458 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1099 +20 10016459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:97:36:0,97,1094 +20 10016460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:84:36:0,84,1033 +20 10016461 . A . . END=10016468 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:35:0,99,1485 +20 10016469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:81:35:0,81,1051 +20 10016470 . T . . END=10016481 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1047 +20 10016482 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:85:35:0,85,1042 +20 10016483 . C . . END=10016491 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:33:0,90,1350 +20 10016492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:74:35:0,74,1062 +20 10016493 . C . . END=10016498 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:93:33:0,93,1395 +20 10016499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:88:33:0,88,1008 +20 10016500 . T . . END=10016501 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:90:33:0,90,1350 +20 10016502 . T . . END=10016503 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:82:33:0,82,938 +20 10016504 . A . . END=10016506 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:31:0,90,1350 +20 10016507 . T . . END=10016528 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:81:29:0,81,874 +20 10016529 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:90:31:0,90,1350 +20 10016530 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:78:31:0,78,861 +20 10016531 . A . . END=10016532 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:93:34:0,93,1395 +20 10016533 . C . . END=10016535 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1032 +20 10016536 . G . . END=10016537 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:31:0,93,936 +20 10016538 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:60:32:0,60,939 +20 10016539 . C . . END=10016540 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:31:0,93,960 +20 10016541 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:99:33:0,99,1051 +20 10016542 . C . . END=10016545 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:93:33:0,93,1395 +20 10016546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:84:33:0,84,1015 +20 10016547 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:52:33:0,52,954 +20 10016548 . A . . END=10016552 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:33:0,90,1350 +20 10016553 . A . . END=10016557 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:36:0,99,1485 +20 10016558 . G . . END=10016559 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:92:36:0,92,1089 +20 10016560 . T . . END=10016577 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:35:0,100,1067 +20 10016578 . T . . END=10016579 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:96:38:0,96,1440 +20 10016580 . G . . END=10016600 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,99,1071 +20 10016601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:94:38:0,94,1090 +20 10016602 . G . . END=10016607 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:35:0,102,1530 +20 10016608 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:89:38:0,89,1140 +20 10016609 . G . . END=10016624 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:36:0,102,1120 +20 10016625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:94:37:0,94,1120 +20 10016626 . G . . END=10016686 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:42:99:35:0,99,1133 +20 10016687 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:90:40:0,90,1180 +20 10016688 . C . . END=10016703 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:41:99:36:0,99,1485 +20 10016704 . T . . END=10016711 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:34:0,93,1123 +20 10016712 . C . . END=10016725 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:33:0,99,996 +20 10016726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:90:37:0,90,1065 +20 10016727 . G . . END=10016757 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,101,1110 +20 10016758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:87:40:0,87,1161 +20 10016759 . G . . END=10016785 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:36:0,99,1123 +20 10016786 . C . . END=10016789 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:90:37:0,90,1350 +20 10016790 . G . . END=10016797 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:87:30:0,87,1305 +20 10016798 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:32:0,90,1350 +20 10016799 . G . . END=10016800 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:30:87:29:0,87,900 +20 10016801 . C . . END=10016802 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:90:30:0,90,919 +20 10016803 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:29:87:29:0,87,911 +20 10016804 . T . . END=10016808 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:32:0,93,990 +20 10016809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:34:0,87,993 +20 10016810 . G . . END=10016823 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:92:31:0,92,903 +20 10016824 . C . . END=10016827 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:99:33:0,99,988 +20 10016828 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:80:32:0,80,952 +20 10016829 . G . . END=10016840 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:33:0,99,988 +20 10016841 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:94:38:0,94,1126 +20 10016842 . G . . END=10016862 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,99,1118 +20 10016863 . G . . END=10016869 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:34:0,90,1350 +20 10016870 . C . . END=10016871 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:87:34:0,87,1305 +20 10016872 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:68:34:0,68,1017 +20 10016873 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1305 +20 10016874 . T . . END=10016876 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:34:0,90,1067 +20 10016877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:34:0,87,1305 +20 10016878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:76:33:0,76,970 +20 10016879 . T . . END=10016890 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:81:31:0,81,1215 +20 10016891 . A . . END=10016898 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:32:0,90,1040 +20 10016899 . T . . END=10016901 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:99:33:0,99,1089 +20 10016902 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:35:0,90,1074 +20 10016903 . A . . END=10017078 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:56:99:35:0,99,1145 +20 10017079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:87:57:0,87,1738 ./.:56:99:35:0,99,1145 +20 10017080 . A . . END=10017228 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:56:99:35:0,99,1145 +20 10017229 . C . . END=10017232 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:96:36:0,96,1440 +20 10017233 . T . . END=10017239 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:99:36:0,99,1485 +20 10017240 . A . . END=10017246 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:93:33:0,93,1395 +20 10017247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:88:33:0,88,996 +20 10017248 . G . . END=10017261 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:90:31:0,90,1350 +20 10017262 . G . . END=10017265 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:84:31:0,84,1260 +20 10017266 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:74:30:0,74,890 +20 10017267 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:84:30:0,84,1260 +20 10017268 . T . . END=10017273 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:78:30:0,78,910 +20 10017274 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:81:30:0,81,1215 +20 10017275 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:79:30:0,79,935 +20 10017276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:29:81:29:0,81,1215 +20 10017277 . G . . END=10017278 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:78:29:0,78,1170 +20 10017279 . C . . END=10017284 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:81:29:0,81,1215 +20 10017285 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:50:31:0,50,821 +20 10017286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:80:32:0,80,950 +20 10017287 . C . . END=10017288 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10017289 . A . . END=10017292 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:87:31:0,87,1305 +20 10017293 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:90:32:0,90,1350 +20 10017294 . A . . END=10017295 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:87:31:0,87,1305 +20 10017296 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:56:32:0,56,894 +20 10017297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10017298 . T . . END=10017300 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:84:30:0,84,1260 +20 10017301 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:75:31:0,75,910 +20 10017302 . C . . END=10017303 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:87:31:0,87,1305 +20 10017304 . A . . END=10017306 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:90:32:0,90,1350 +20 10017307 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:84:32:0,84,987 +20 10017308 . G . . END=10017309 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10017310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:75:33:0,75,978 +20 10017311 . G . . END=10017322 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10017323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:88:33:0,88,1014 +20 10017324 . T . . END=10017327 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:90:33:0,90,1350 +20 10017328 . A . . END=10017330 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:87:33:0,87,1305 +20 10017331 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:90:34:0,90,1350 +20 10017332 . A . . END=10017334 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:84:33:0,84,1001 +20 10017335 . C . . END=10017338 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:90:33:0,90,1350 +20 10017339 . A . . END=10017340 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:87:33:0,87,1305 +20 10017341 . T . . END=10017345 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:93:35:0,93,1395 +20 10017346 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:88:35:0,88,1030 +20 10017347 . A . . END=10017358 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:92:31:0,92,959 +20 10017359 . G . . END=10017361 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,982 +20 10017362 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:96:32:0,96,945 +20 10017363 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:82:31:0,82,895 +20 10017364 . C . . END=10017367 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,980 +20 10017368 . T . . END=10017372 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:92:33:0,92,1019 +20 10017373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:67:33:0,67,904 +20 10017374 . C . . END=10017376 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:96:34:0,96,1440 +20 10017377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:85:34:0,85,945 +20 10017378 . T . . END=10017380 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:96:32:0,96,940 +20 10017381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:66:34:0,66,925 +20 10017382 . C . . END=10017388 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,922 +20 10017389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:80:32:0,80,916 +20 10017390 . T . . END=10017393 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:36:0,105,1575 +20 10017394 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:92:37:0,92,1077 +20 10017395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:37:0,108,1620 +20 10017396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:98:38:0,98,1104 +20 10017397 . G . . END=10017426 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:99:36:0,99,1127 +20 10017427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:93:31:0,93,944 +20 10017428 . T . . END=10017454 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:99:36:0,102,1096 +20 10017455 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:91:36:0,91,1024 +20 10017456 . C . . END=10017457 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:99:35:0,105,1048 +20 10017458 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:82:37:0,82,1015 +20 10017459 . C . . END=10017473 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:35:0,99,1069 +20 10017474 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:83:34:0,83,946 +20 10017475 . G . . END=10017478 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:90:34:0,90,1350 +20 10017479 . G . . END=10017488 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:84:30:0,84,1260 +20 10017489 . G . . END=10017497 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:78:29:0,78,1170 +20 10017498 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:29:81:29:0,81,1215 +20 10017499 . G . . END=10017504 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:27:72:26:0,72,1080 +20 10017505 . G . . END=10017519 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:24:63:22:0,63,649 +20 10017520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:64:51:0,64,1772 ./.:24:63:22:0,63,649 +20 10017521 . C . . END=10017528 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:24:63:22:0,63,649 +20 10017529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:22:0,57,855 +20 10017530 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:45:22:0,45,597 +20 10017531 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:21:0,57,855 +20 10017532 . T . . END=10017535 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:54:21:0,54,810 +20 10017536 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:48:21:0,48,720 +20 10017537 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:51:22:0,51,765 +20 10017538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:54:22:0,54,810 +20 10017539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:52:21:0,52,608 +20 10017540 . C . . END=10017542 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:51:20:0,51,765 +20 10017543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:49:20:0,49,563 +20 10017544 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:22:0,57,855 +20 10017545 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:52:22:0,52,651 +20 10017546 . A . . END=10017549 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:19:0,57,598 +20 10017550 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:33:19:0,33,419 +20 10017551 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:56:19:0,56,530 +20 10017552 . T . . END=10017553 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:60:20:0,60,591 +20 10017554 . G . . END=10017560 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:20:0,57,855 +20 10017561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:55:22:0,55,677 +20 10017562 . A . . END=10017563 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:21:0,57,855 +20 10017564 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:41:19:0,41,557 +20 10017565 . C . . END=10017566 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:54:19:0,54,810 +20 10017567 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:20:0,57,855 +20 10017568 . G . . END=10017572 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:60:20:0,60,637 +20 10017573 . C . . END=10017576 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:19:0,57,610 +20 10017577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,592 +20 10017578 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:20:0,57,855 +20 10017579 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:54:20:0,54,810 +20 10017580 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:36:20:0,36,531 +20 10017581 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,621 +20 10017582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017583 . G . . END=10017585 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:48:19:0,48,720 +20 10017586 . T . . END=10017587 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017588 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:47:20:0,47,617 +20 10017589 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:45:19:0,45,675 +20 10017590 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,720 +20 10017591 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:46:20:0,46,566 +20 10017593 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:39:20:0,39,587 +20 10017594 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:54:20:0,54,810 +20 10017595 . G . . END=10017600 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:60:20:0,60,620 +20 10017601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:49:20:0,49,537 +20 10017602 . C . . END=10017604 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:63:21:0,63,632 +20 10017605 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:23:58:23:0,58,691 +20 10017606 . A . . END=10017607 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:75:25:0,75,792 +20 10017608 . A . . END=10017609 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:81:28:0,81,1215 +20 10017610 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:66:28:0,66,841 +20 10017611 . A . . END=10017612 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:84:28:0,84,873 +20 10017613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:78:26:0,78,819 +20 10017614 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:60:26:0,60,775 +20 10017615 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:29:74:29:0,74,852 +20 10017616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:29:87:29:0,87,889 +20 10017617 . A . . END=10017618 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:30:90:30:0,90,951 +20 10017619 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:30:89:30:0,89,910 +20 10017620 . A . . END=10017631 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:90:30:0,90,967 +20 10017632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:35:75:35:0,75,994 +20 10017633 . G . . END=10017634 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:99:35:0,99,1485 +20 10017635 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:90:34:0,90,1013 +20 10017636 . G . . END=10017668 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:38:99:34:0,102,1059 +20 10017669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:43:91:43:0,91,1279 +20 10017670 . G . . END=10017752 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:45:99:37:0,105,1250 +20 10017753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:92:40:0,92,1163 +20 10017754 . G . . END=10017755 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:99:40:0,99,1485 +20 10017756 . T . . END=10017762 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:37:93:36:0,93,1395 +20 10017763 . T . . END=10017775 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:99:34:0,99,1148 +20 10017776 . A G, . . BaseQRankSum=-2.641e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=0.038 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:45:0,114,1710,114,1710,1710 ./.:19,18,0:37:99:.:441,0,519,498,573,1072:11,8,10,8 +20 10017777 . G . . END=10017954 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:47:99:38:0,100,1204 +20 10017955 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:42:97:42:0,97,1211 +20 10017956 . A . . END=10017968 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:42:99:40:0,111,1665 +20 10017969 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:95:40:0,95,1207 +20 10017970 . A . . END=10017971 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:41:99:40:0,107,1218 +20 10017972 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:94:40:0,94,1221 +20 10017973 . C . . END=10017988 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:41:99:39:0,99,1177 +20 10017989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:96:36:0,96,1042 +20 10017990 . C . . END=10017991 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:39:89:39:0,89,1173 +20 10017992 . C . . END=10017995 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:93:31:0,93,972 +20 10017996 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:79:32:0,79,971 +20 10017997 . C . . END=10017998 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:93:33:0,93,1395 +20 10017999 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:70:34:0,70,1002 +20 10018000 . A . . END=10018009 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:33:83:32:0,83,998 +20 10018010 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:32:0,90,1350 +20 10018011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:76:31:0,76,954 +20 10018012 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:93:31:0,93,1023 +20 10018013 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:84:32:0,84,963 +20 10018014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:32:0,90,1350 +20 10018015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:82:31:0,82,935 +20 10018016 . C . . END=10018018 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:31:0,90,1350 +20 10018019 . C . . END=10018037 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:35:99:33:0,99,1053 +20 10018038 . C . . END=10018049 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:37:90:35:0,90,1085 +20 10018050 . G . . END=10018070 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:39:99:36:0,100,1118 +20 10018071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:92:40:0,92,1204 +20 10018072 . T . . END=10018157 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:47:99:42:0,100,1365 +20 10018158 . G C, . . BaseQRankSum=5.21;DP=142;ExcessHet=3.01;MQRankSum=1.12;RAW_MQandDP=508969,142;ReadPosRankSum=1.18 GT:AD:DP:GQ:PL:SB ./.:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 ./.:0,53,0:53:99:1660,159,0,1660,159,1660:0,0,27,26 +20 10018159 . C . . END=10018214 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:52:99:48:0,105,1381 +20 10018215 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:51:80:51:0,80,1405 +20 10018216 . C . . END=10018301 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:48:99:44:0,103,1413 +20 10018302 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:45:92:45:0,92,1341 +20 10018303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:99:43:0,120,1800 +20 10018304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:44:92:44:0,92,1346 +20 10018305 . T . . END=10018321 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:99:40:0,99,1220 +20 10018322 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:97:43:0,97,1309 +20 10018323 . A . . END=10018455 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:45:99:40:0,107,1255 +20 10018456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:97:43:0,97,1265 +20 10018457 . T . . END=10018504 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:48:99:43:0,119,1324 +20 10018505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:44:97:44:0,97,1276 +20 10018506 . T . . END=10018554 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:53:99:44:0,120,1800 +20 10018555 . G A, . . BaseQRankSum=0.301;ClippingRankSum=0.00;DP=137;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=493200,137;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL:SB ./.:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 ./.:33,22,0:55:99:490,0,809,589,874,1463:19,14,11,11 +20 10018556 . C . . END=10018699 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:55:99:46:0,115,1531 +20 10018700 . T C, . . BaseQRankSum=-2.659e+00;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=0.244 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:83:99:70:0,120,1800,120,1800,1800 ./.:23,23,0:46:99:.:560,0,626,629,695,1325:7,16,12,11 +20 10018701 . A . . END=10018873 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:54:99:46:0,115,1455 +20 10018874 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:49:74:49:0,74,1298 +20 10018875 . T . . END=10018923 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:47:99:41:0,101,1286 +20 10018924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:98:44:0,98,1327 +20 10018925 . A . . END=10018931 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:42:0,111,1318 +20 10018932 . T . . END=10018933 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:42:71:41:0,71,1207 +20 10018934 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:43:0,110,1324 +20 10018935 . A . . END=10018936 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:95:43:0,95,1230 +20 10018937 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:43:0,120,1800 +20 10018938 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:82:43:0,82,1207 +20 10018939 . G . . END=10019050 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:99:39:0,101,1233 +20 10019051 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:98:44:0,98,1364 +20 10019052 . G . . END=10019092 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:45:99:41:0,117,1347 +20 10019093 . A G, . . BaseQRankSum=1.71;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=1.07;RAW_MQandDP=422041,118;ReadPosRankSum=-2.520e-01 GT:AD:DP:GQ:PL:SB ./.:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 ./.:2,46,0:48:93:1332,93,0,1338,137,1381:1,1,25,21 +20 10019094 . C . . END=10019229 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:47:99:39:0,102,1224 +20 10019230 . A . . END=10019235 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:93:36:0,93,1395 +20 10019236 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:79:37:0,79,1062 +20 10019237 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:86:37:0,86,1106 +20 10019238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:38:0,99,1485 +20 10019239 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:96:37:0,96,1440 +20 10019240 . G . . END=10019241 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:36:0,99,1485 +20 10019242 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:96:36:0,96,1097 +20 10019243 . A . . END=10019244 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,99,1485 +20 10019245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:97:38:0,97,1125 +20 10019246 . A . . END=10019255 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:39:0,100,1147 +20 10019256 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:90:39:0,90,1156 +20 10019257 . C . . END=10019426 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:47:99:39:0,104,1201 +20 10019427 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:88:42:0,88,1127 +20 10019428 . C . . END=10019439 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:39:0,102,1242 +20 10019440 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:92:39:0,92,1196 +20 10019441 . A . . END=10019448 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,102,1530 +20 10019449 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:77:36:0,77,1107 +20 10019450 . C . . END=10019452 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:36:0,99,1485 +20 10019453 . C . . END=10019462 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:93:35:0,93,1395 +20 10019463 . G . . END=10019465 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:99:34:0,99,1177 +20 10019466 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:95:37:0,95,1110 +20 10019467 . A . . END=10019469 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,108,1620 +20 10019470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:90:35:0,90,1082 +20 10019471 . G . . END=10019486 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:99:35:0,104,1074 +20 10019487 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:82:39:0,82,1137 +20 10019488 . G . . END=10019490 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:40:0,111,1665 +20 10019491 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:41:97:41:0,97,1197 +20 10019492 . T . . END=10019543 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:37:0,101,1111 +20 10019544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:96:38:0,96,1098 +20 10019545 . T . . END=10019549 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,102,1530 +20 10019550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:92:38:0,92,1111 +20 10019551 . A . . END=10019557 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:99:36:0,102,1530 +20 10019558 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:87:38:0,87,1114 +20 10019559 . A . . END=10019614 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:99:35:0,99,1094 +20 10019615 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:84:36:0,84,1053 +20 10019616 . A . . END=10019758 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:36:0,99,1100 +20 10019759 . T . . END=10019761 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:96:37:0,96,1440 +20 10019762 . A . . END=10019768 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:37:0,99,1485 +20 10019769 . T . . END=10019774 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:96:33:0,96,1440 +20 10019775 . A . . END=10019776 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10019777 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:72:34:0,72,1031 +20 10019778 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:96:34:0,96,1440 +20 10019779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:85:32:0,85,957 +20 10019780 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10019781 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:81:33:0,81,976 +20 10019782 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10019783 . C . . END=10019784 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:87:33:0,87,1305 +20 10019785 . A . . END=10019786 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:34:0,90,1350 +20 10019787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:87:33:0,87,1305 +20 10019788 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10019789 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:87:34:0,87,1305 +20 10019790 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:90:35:0,90,1350 +20 10019791 . T . . END=10019800 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:81:31:0,81,1215 +20 10019801 . T . . END=10019808 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:78:29:0,78,1170 +20 10019809 . T . . END=10019812 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:81:32:0,81,1215 +20 10019813 . T . . END=10019815 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:78:31:0,78,1170 +20 10019816 . A . . END=10019821 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:81:29:0,81,1215 +20 10019822 . A . . END=10019824 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:90:30:0,90,903 +20 10019825 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:87:30:0,87,1305 +20 10019826 . T . . END=10019830 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:31:0,90,1350 +20 10019831 . C . . END=10019832 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10019833 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:80:33:0,80,958 +20 10019834 . T . . END=10019840 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10019841 . G . . END=10019854 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:34:0,99,1068 +20 10019855 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:41:95:41:0,95,1139 +20 10019856 . A . . END=10019893 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:43:99:41:0,110,1235 +20 10019894 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:43:86:43:0,86,1269 +20 10019895 . A . . END=10019926 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:44:99:43:0,115,1304 +20 10019927 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:95:42:0,95,1251 +20 10019928 . C . . END=10019967 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:39:0,99,1215 +20 10019968 . C . . END=10019973 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:90:35:0,90,1350 +20 10019974 . A . . END=10019976 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:87:35:0,87,1305 +20 10019977 . A . . END=10019981 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:34:0,90,1350 +20 10019982 . A . . END=10019998 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:81:28:0,81,1215 +20 10019999 . C . . END=10020002 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:78:27:0,78,1170 +20 10020003 . A . . END=10020006 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10020007 . A . . END=10020010 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:75:27:0,75,892 +20 10020011 . T . . END=10020017 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10020018 . T . . END=10020021 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:75:28:0,75,872 +20 10020022 . A . . END=10020025 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:81:29:0,81,1215 +20 10020026 . G . . END=10020030 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10020031 . C . . END=10020041 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:99:33:0,99,1045 +20 10020042 . G . . END=10020056 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:33:0,90,1350 +20 10020057 . T . . END=10020062 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10020063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:76:36:0,76,1075 +20 10020064 . C . . END=10020228 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:46:99:35:0,99,1061 +20 10020229 . G A, . . BaseQRankSum=5.79;ClippingRankSum=0.00;DP=127;ExcessHet=3.01;MQRankSum=0.104;RAW_MQandDP=452210,127;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL:SB ./.:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 ./.:30,15,0:45:99:368,0,693,456,738,1194:15,15,9,6 +20 10020230 . T . . END=10020324 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:43:99:38:0,99,1202 +20 10020325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:82:38:0,82,1125 +20 10020326 . A . . END=10020337 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:90:32:0,90,1350 +20 10020338 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:79:32:0,79,941 +20 10020339 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020340 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:82:31:0,82,923 +20 10020341 . T . . END=10020343 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:32:0,90,1350 +20 10020344 . C . . END=10020346 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10020347 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:56:35:0,56,973 +20 10020348 . G . . END=10020349 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:35:0,102,1530 +20 10020350 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:90:35:0,90,1034 +20 10020351 . C . . END=10020412 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:35:0,99,1067 +20 10020413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:98:39:0,98,1205 +20 10020414 . A . . END=10020428 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:35:0,99,1158 +20 10020429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:81:33:0,81,990 +20 10020430 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:36:0,99,1485 +20 10020431 . A . . END=10020433 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10020434 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:99:38:0,99,1485 +20 10020435 . A . . END=10020441 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:90:34:0,90,1350 +20 10020442 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:66:34:0,66,978 +20 10020443 . C . . END=10020450 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:31:0,90,1350 +20 10020451 . G . . END=10020454 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:87:29:0,87,953 +20 10020455 . A . . END=10020464 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:31:0,90,946 +20 10020465 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:85:32:0,85,945 +20 10020466 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:32:0,90,1350 +20 10020467 . A . . END=10020469 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:84:32:0,84,1260 +20 10020470 . T . . END=10020471 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:34:0,90,1350 +20 10020472 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:86:35:0,86,1051 +20 10020473 . C . . END=10020475 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:33:0,93,1395 +20 10020476 . A . . END=10020487 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:34:0,99,1086 +20 10020488 . A . . END=10020491 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10020492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:89:36:0,89,1087 +20 10020493 . A . . END=10020494 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:91:34:0,91,1013 +20 10020495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:88:33:0,88,997 +20 10020496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10020497 . T . . END=10020502 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:33:0,99,1007 +20 10020503 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:75:34:0,75,1010 +20 10020504 . T . . END=10020505 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:85:36:0,85,1039 +20 10020506 . A . . END=10020521 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:90:33:0,90,1350 +20 10020522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:73:36:0,73,1022 +20 10020523 . T . . END=10020524 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1440 +20 10020525 . G . . END=10020526 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:36:0,102,1530 +20 10020527 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:92:36:0,92,1060 +20 10020528 . T . . END=10020532 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:33:0,99,1072 +20 10020533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:34:0,90,1034 +20 10020534 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020535 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:91:34:0,91,1017 +20 10020536 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020537 . C . . END=10020540 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:32:0,96,979 +20 10020541 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:82:33:0,82,897 +20 10020542 . C . . END=10020546 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:90:33:0,90,1012 +20 10020547 . G . . END=10020548 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:85:34:0,85,972 +20 10020549 . A . . END=10020559 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:91:34:0,91,1038 +20 10020560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:79:31:0,79,931 +20 10020561 . A . . END=10020566 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:31:0,93,927 +20 10020567 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:54:32:0,54,883 +20 10020568 . C . . END=10020569 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:90:30:0,90,832 +20 10020570 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:85:33:0,85,985 +20 10020571 . T . . END=10020576 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:32:0,93,943 +20 10020577 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:81:32:0,81,908 +20 10020578 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:33:0,93,1395 +20 10020579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:79:32:0,79,884 +20 10020580 . T . . END=10020581 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020582 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:88:33:0,88,983 +20 10020583 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:72:33:0,72,911 +20 10020584 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:96:32:0,96,961 +20 10020585 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020586 . T . . END=10020587 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:80:33:0,80,937 +20 10020588 . A . . END=10020589 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10020590 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:99:33:0,99,1003 +20 10020591 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,977 +20 10020592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10020593 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:77:36:0,77,966 +20 10020594 . A . . END=10020595 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:36:0,102,1530 +20 10020596 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:93:36:0,93,1395 +20 10020597 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,952 +20 10020598 . A . . END=10020601 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:93:35:0,93,1395 +20 10020602 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:70:35:0,70,915 +20 10020603 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,1305 +20 10020604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:61:35:0,61,923 +20 10020605 . A . . END=10020614 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:80:32:0,80,908 +20 10020615 . G . . END=10020618 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:71:30:0,71,866 +20 10020619 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:39:28:0,39,725 +20 10020620 . T . . END=10020634 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:75:26:0,75,803 +20 10020635 . T . . END=10020638 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:81:27:0,81,841 +20 10020639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:68:27:0,68,842 +20 10020640 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:78:27:0,78,1170 +20 10020641 . A . . END=10020652 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:81:28:0,81,846 +20 10020653 . T . . END=10020667 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:72:27:0,72,837 +20 10020668 . G . . END=10020669 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:64:27:0,64,762 +20 10020670 . A . . END=10020674 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:72:27:0,72,1080 +20 10020675 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:58:28:0,58,793 +20 10020676 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:26:77:26:0,77,761 +20 10020677 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:26:46:26:0,46,672 +20 10020678 . A . . END=10020681 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:75:26:0,75,1125 +20 10020682 . A . . END=10020696 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:81:29:0,81,1215 +20 10020697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:78:32:0,78,954 +20 10020698 . T . . END=10020699 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:84:31:0,84,1260 +20 10020700 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:74:30:0,74,907 +20 10020701 . C . . END=10020702 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:84:28:0,84,917 +20 10020703 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:64:27:0,64,811 +20 10020704 . C . . END=10020707 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:81:28:0,81,1215 +20 10020708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:53:28:0,53,852 +20 10020709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:68:28:0,68,857 +20 10020710 . C . . END=10020714 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:81:27:0,81,903 +20 10020715 . G . . END=10020717 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:72:26:0,72,841 +20 10020718 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:58:30:0,58,917 +20 10020719 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:74:30:0,74,931 +20 10020720 . A . . END=10020721 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:93:31:0,93,982 +20 10020722 . G . . END=10020723 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:78:32:0,78,935 +20 10020724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:80:32:0,80,981 +20 10020725 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:90:31:0,90,1350 +20 10020726 . A . . END=10020728 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:87:32:0,87,1305 +20 10020729 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:61:32:0,61,932 +20 10020730 . G . . END=10020742 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:81:30:0,81,1215 +20 10020743 . T . . END=10020744 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:90:32:0,90,1350 +20 10020745 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:64:31:0,64,914 +20 10020746 . G . . END=10020747 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020748 . A . . END=10020749 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:83:32:0,83,961 +20 10020750 . A . . END=10020751 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:31:0,90,1350 +20 10020752 . C . . END=10020753 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:81:32:0,81,991 +20 10020754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:77:35:0,77,985 +20 10020755 . A . . END=10020757 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:96:35:0,96,1440 +20 10020758 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,105,1575 +20 10020759 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1107 +20 10020760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,102,1530 +20 10020761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1104 +20 10020762 . A . . END=10020789 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:36:0,105,1134 +20 10020790 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:98:40:0,98,1142 +20 10020791 . A . . END=10020815 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:38:0,102,1147 +20 10020816 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:41:96:41:0,96,1176 +20 10020817 . C . . END=10020818 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:40:0,117,1755 +20 10020819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:96:39:0,96,1150 +20 10020820 . C . . END=10020835 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:34:0,102,1075 +20 10020836 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1082 +20 10020837 . A . . END=10020845 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:35:0,102,1098 +20 10020846 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1051 +20 10020847 . A . . END=10020851 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:36:0,108,1119 +20 10020852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:80:36:0,80,1067 +20 10020853 . C . . END=10020854 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,111,1161 +20 10020855 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:94:35:0,94,1091 +20 10020856 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,111,1153 +20 10020857 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:97:37:0,97,1119 +20 10020858 . T . . END=10020887 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:99:33:0,99,999 +20 10020888 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:42:98:42:0,98,1100 +20 10020889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:41:99:38:0,102,1123 +20 10020890 . A . . END=10020896 GT:DP:GQ:MIN_DP:PL ./.:42:93:40:0,93,1395 ./.:41:99:38:0,102,1123 +20 10020897 . C . . END=10020900 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:41:99:38:0,102,1123 +20 10020901 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:38:90:38:0,90,1115 +20 10020902 . C . . END=10020905 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:39:99:38:0,99,1485 +20 10020906 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:38:85:38:0,85,1131 +20 10020907 . A . . END=10020917 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:37:93:33:0,93,1395 +20 10020918 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:33:86:33:0,86,999 +20 10020919 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:95:45:0,95,1765 ./.:33:93:33:0,93,1395 +20 10020920 . T . . END=10020931 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:84:30:0,84,1260 +20 10020932 . G . . END=10020935 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:31:0,90,1350 +20 10020936 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:74:32:0,74,939 +20 10020937 . A . . END=10020940 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:96:33:0,96,1440 +20 10020941 . C . . END=10021017 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:34:0,99,1113 +20 10021018 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:87:41:0,87,1078 +20 10021019 . T . . END=10021024 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:40:0,102,1530 +20 10021025 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:93:42:0,93,1222 +20 10021026 . A . . END=10021028 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:39:0,101,1174 +20 10021029 . A . . END=10021030 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:94:38:0,94,1108 +20 10021031 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:87:37:0,87,1087 +20 10021032 . A . . END=10021033 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,99,1485 +20 10021034 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:91:36:0,91,1055 +20 10021035 . A . . END=10021036 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,99,1078 +20 10021037 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:95:37:0,95,1095 +20 10021038 . C . . END=10021040 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:34:0,100,1058 +20 10021041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:88:34:0,88,1047 +20 10021042 . T . . END=10021043 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10021044 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:91:34:0,91,1019 +20 10021045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:86:34:0,86,1027 +20 10021046 . T . . END=10021047 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10021048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,1018 +20 10021049 . C . . END=10021051 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:96:35:0,96,1440 +20 10021052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10021053 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:89:35:0,89,1059 +20 10021054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:91:34:0,91,1053 +20 10021055 . G . . END=10021056 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:86:34:0,86,1002 +20 10021057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:70:36:0,70,1007 +20 10021058 . T . . END=10021078 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:36:0,99,1234 +20 10021079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:98:38:0,98,1138 +20 10021080 . C . . END=10021082 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,100,1121 +20 10021083 . G . . END=10021085 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:91:35:0,91,1080 +20 10021086 . C . . END=10021088 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:87:36:0,87,1305 +20 10021089 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:90:37:0,90,1350 +20 10021090 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:87:37:0,87,1047 +20 10021091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:90:35:0,90,1350 +20 10021092 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:86:35:0,86,946 +20 10021093 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10021094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:69:34:0,69,1008 +20 10021095 . A . . END=10021101 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:32:0,90,1350 +20 10021102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10021103 . T . . END=10021106 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:93:35:0,93,1395 +20 10021107 . A . . END=10021113 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10021114 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:89:35:0,89,1066 +20 10021115 . T . . END=10021116 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:38:0,111,1665 +20 10021117 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:84:39:0,84,1127 +20 10021118 . A . . END=10021256 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:35:0,99,1103 +20 10021257 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:89:39:0,89,1051 +20 10021258 . T . . END=10021294 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:36:0,99,1115 +20 10021295 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:98:38:0,98,1138 +20 10021296 . C . . END=10021326 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:36:0,99,1128 +20 10021327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:96:36:0,96,1440 +20 10021328 . T . . END=10021333 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:38:0,99,1485 +20 10021334 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:93:41:0,93,1227 +20 10021335 . A . . END=10021492 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:36:0,102,1161 +20 10021493 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:94:37:0,94,1102 +20 10021494 . T . . END=10021507 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:37:0,105,1163 +20 10021508 . T . . END=10021512 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:96:38:0,96,1440 +20 10021513 . T . . END=10021515 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:40:0,99,1485 +20 10021516 . T . . END=10021517 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:93:37:0,93,1156 +20 10021518 . T . . END=10021523 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:33:0,99,1017 +20 10021524 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10021525 . T . . END=10021526 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:35:0,99,1485 +20 10021527 . T . . END=10021534 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:94:33:0,94,1092 +20 10021535 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:83:33:0,83,965 +20 10021536 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10021537 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:96:32:0,96,990 +20 10021538 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:99:33:0,99,1052 +20 10021539 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:86:34:0,86,972 +20 10021540 . T . . END=10021544 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,102,993 +20 10021545 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:61:37:0,61,979 +20 10021546 . C . . END=10021551 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:37:0,106,1172 +20 10021552 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:85:39:0,85,1050 +20 10021553 . T . . END=10021555 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:38:0,108,1620 +20 10021556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:96:38:0,96,1107 +20 10021557 . T . . END=10021569 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:40:0,111,1665 +20 10021570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:89:42:0,89,1080 +20 10021571 . A . . END=10021625 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:40:0,101,1068 +20 10021626 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:47:86:47:0,86,1215 +20 10021627 . T . . END=10021642 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:41:0,103,1263 +20 10021643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:92:42:0,92,1196 +20 10021644 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:43:0,120,1800 +20 10021645 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:89:41:0,89,1148 +20 10021646 . T . . END=10021684 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:42:0,115,1387 +20 10021685 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:82:49:0,82,1272 +20 10021686 . A . . END=10021945 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:40:0,99,1218 +20 10021946 . T A, . . BaseQRankSum=-1.906e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=2.22 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:46:0,105,1721,105,1721,1721 ./.:21,26,0:47:99:.:666,0,522,729,600,1329:10,11,12,14 +20 10021947 . A . . END=10021989 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:99:43:0,101,1413 +20 10021990 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:95:42:0,95,1236 +20 10021991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:77:41:0,77,1138 +20 10021992 . C . . END=10022008 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:38:0,107,1286 +20 10022009 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:44:97:44:0,97,1182 +20 10022010 . A . . END=10022279 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:42:0,101,1311 +20 10022280 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:93:49:0,93,1422 +20 10022281 . T . . END=10022298 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:99:48:0,111,1370 +20 10022299 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:98:50:0,98,1437 +20 10022300 . A . . END=10022337 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:48:99:38:0,108,1620 +20 10022338 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:80:38:0,80,1122 +20 10022339 . T . . END=10022340 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:36:0,105,1575 +20 10022341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:97:37:0,97,1107 +20 10022342 . C . . END=10022345 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:38:0,105,1575 +20 10022346 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:64:38:0,64,1050 +20 10022347 . T . . END=10022352 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:39:0,106,1160 +20 10022353 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:89:39:0,89,1167 +20 10022354 . C . . END=10022367 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:38:0,99,1485 +20 10022368 . G . . END=10022369 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:92:37:0,92,1054 +20 10022370 . T . . END=10022373 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:36:0,99,1485 +20 10022374 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:96:38:0,96,1062 +20 10022375 . T . . END=10022490 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:38:0,105,1137 +20 10022491 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:46:92:46:0,92,1336 +20 10022492 . C . . END=10022562 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:44:99:40:0,102,1281 +20 10022563 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:91:41:0,91,1194 +20 10022564 . A . . END=10022604 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:36:0,99,1143 +20 10022605 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:98:38:0,98,1167 +20 10022606 . G . . END=10022624 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:39:0,111,1147 +20 10022625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:93:41:0,93,1236 +20 10022626 . T . . END=10022631 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:42:0,117,1755 +20 10022632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:98:41:0,98,1268 +20 10022633 . A . . END=10022635 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,117,1196 +20 10022636 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:95:41:0,95,1224 +20 10022637 . T . . END=10022643 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:40:0,109,1319 +20 10022644 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:92:42:0,92,1215 +20 10022645 . A . . END=10022693 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:44:99:40:0,108,1176 +20 10022694 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:46:84:46:0,84,1246 +20 10022695 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:45:0,120,1800 +20 10022696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:78:43:0,78,1154 +20 10022697 . T . . END=10022771 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:47:99:44:0,107,1204 +20 10022772 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:51:93:51:0,93,1444 +20 10022773 . T . . END=10022956 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:39:0,104,1128 +20 10022957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:93:37:0,93,1111 +20 10022958 . G . . END=10022961 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,108,1620 +20 10022962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:92:42:0,92,1153 +20 10022963 . C . . END=10022971 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:41:0,110,1201 +20 10022972 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:93:41:0,93,1258 +20 10022973 . G . . END=10022974 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,116,1130 +20 10022975 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:87:40:0,87,1134 +20 10022976 . G . . END=10022977 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:40:0,114,1199 +20 10022978 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:90:40:0,90,1173 +20 10022979 . T . . END=10023021 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:40:0,107,1244 +20 10023022 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:95:43:0,95,1209 +20 10023023 . T . . END=10023042 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,99,1187 +20 10023043 . T . . END=10023045 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:90:35:0,90,1072 +20 10023046 . A . . END=10023053 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:33:0,99,1009 +20 10023054 . C . . END=10023060 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:90:32:0,90,1350 +20 10023061 . A . . END=10023063 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:87:34:0,87,1305 +20 10023064 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:34:0,90,1350 +20 10023065 . C . . END=10023066 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:87:32:0,87,1305 +20 10023067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:93:34:0,93,1395 +20 10023068 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:82:34:0,82,1017 +20 10023069 . T . . END=10023072 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:93:33:0,93,1395 +20 10023073 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:61:34:0,61,909 +20 10023074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:93:34:0,93,1395 +20 10023075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:85:32:0,85,902 +20 10023076 . C . . END=10023083 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:33:0,90,1049 +20 10023084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:87:33:0,87,981 +20 10023085 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:71:33:0,71,908 +20 10023086 . T . . END=10023088 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:93:33:0,93,1395 +20 10023089 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:58:34:0,58,912 +20 10023090 . C . . END=10023095 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:32:0,90,988 +20 10023096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:78:32:0,78,908 +20 10023097 . C . . END=10023100 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:32:0,90,1350 +20 10023101 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:86:33:0,86,935 +20 10023102 . T . . END=10023108 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:90:34:0,90,1350 +20 10023109 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:78:32:0,78,885 +20 10023110 . A . . END=10023117 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:90:32:0,90,934 +20 10023118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:42:34:0,42,919 +20 10023119 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10023120 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:96:35:0,96,1440 +20 10023121 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,980 +20 10023122 . G . . END=10023124 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,99,1485 +20 10023125 . T . . END=10023134 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:90:34:0,90,1350 +20 10023135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:82:33:0,82,953 +20 10023136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:78:32:0,78,877 +20 10023137 . C . . END=10023140 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:93:32:0,93,963 +20 10023141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:65:33:0,65,881 +20 10023142 . T . . END=10023144 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,102,1023 +20 10023145 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:79:32:0,79,932 +20 10023146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:96:36:0,96,1037 +20 10023147 . A . . END=10023152 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:33:0,99,991 +20 10023153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:92:36:0,92,1076 +20 10023154 . T . . END=10023160 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:35:0,102,1036 +20 10023161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:93:39:0,93,1155 +20 10023162 . T . . END=10023167 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:37:0,102,1079 +20 10023168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:96:40:0,96,1147 +20 10023169 . T . . END=10023219 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:40:0,99,1214 +20 10023220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:88:45:0,88,1301 +20 10023221 . T . . END=10023378 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:48:99:41:0,101,1249 +20 10023379 . T . . END=10023383 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:90:36:0,90,1350 +20 10023384 . T . . END=10023406 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:31:81:29:0,81,1215 +20 10023407 . G . . END=10023408 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:31:0,90,1350 +20 10023409 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:82:33:0,82,999 +20 10023410 . G . . END=10023412 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:90:33:0,90,1350 +20 10023413 . T . . END=10023416 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:34:0,99,1485 +20 10023417 . C . . END=10023422 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:96:33:0,96,1440 +20 10023423 . C . . END=10023429 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1027 +20 10023430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,1036 +20 10023431 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,102,1083 +20 10023432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:78:34:0,78,1065 +20 10023433 . C . . END=10023434 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:34:0,90,1065 +20 10023435 . C . . END=10023437 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10023438 . A . . END=10023441 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:96:33:0,96,1440 +20 10023442 . G A, . . BaseQRankSum=0.223;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=-5.460e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:46:0,105,1721,105,1721,1721 ./.:1,31,0:32:62:.:964,62,0,967,93,998:1,0,18,13 +20 10023443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:74:33:0,74,1026 +20 10023444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:96:34:0,96,1440 +20 10023445 . G . . END=10023446 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10023447 . C . . END=10023454 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:93:34:0,93,1395 +20 10023455 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:76:35:0,76,1076 +20 10023456 . T . . END=10023466 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10023467 . A . . END=10023470 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:94:35:0,94,1039 +20 10023471 . T . . END=10023472 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10023473 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:91:36:0,91,1097 +20 10023474 . G . . END=10023483 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,99,1020 +20 10023484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:87:35:0,87,1053 +20 10023485 . G . . END=10023488 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,99,1076 +20 10023489 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:70:34:0,70,1027 +20 10023490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10023491 . T . . END=10023493 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10023494 . C . . END=10023495 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:83:34:0,83,1030 +20 10023496 . A . . END=10023498 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:33:0,90,1350 +20 10023499 . A . . END=10023503 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:81:31:0,81,1215 +20 10023504 . G . . END=10023506 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:90:35:0,90,1350 +20 10023507 . T . . END=10023511 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:87:32:0,87,1305 +20 10023512 . A . . END=10023524 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:31:90:30:0,90,950 +20 10023525 . C . . END=10023526 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:33:0,99,1011 +20 10023527 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:96:32:0,96,1001 +20 10023528 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:84:34:0,84,926 +20 10023529 . G . . END=10023545 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,99,986 +20 10023546 . A . . END=10023548 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:93:38:0,93,1395 +20 10023549 . C . . END=10023555 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:84:35:0,84,1260 +20 10023556 . T . . END=10023560 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:93:33:0,93,1395 +20 10023561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10023562 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,1028 +20 10023563 . T . . END=10023571 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,105,1090 +20 10023572 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:96:37:0,96,1096 +20 10023573 . A . . END=10023603 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:36:0,102,1142 +20 10023604 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:97:39:0,97,1208 +20 10023605 . T . . END=10023688 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:39:0,102,1217 +20 10023689 . G A, . . BaseQRankSum=2.14;DP=119;ExcessHet=3.01;MQRankSum=1.35;RAW_MQandDP=285769,80;ReadPosRankSum=1.16 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:29,51,0:80:99:.:1881,0,946,1968,1099,3067:16,13,26,25 ./.:.:50:99:39:0,102,1217,102,1217,1217 +20 10023690 . G . . END=10023877 GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:50:99:39:0,102,1217 +20 10023878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:44:80:44:0,80,1273 +20 10023879 . A . . END=10024106 GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:55:99:43:0,104,1309 +20 10024107 . C T, . . BaseQRankSum=5.77;DP=138;ExcessHet=3.01;MQRankSum=-1.546e+00;RAW_MQandDP=303563,86;ReadPosRankSum=0.148 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:38,48,0:86:99:.:1723,0,1086,1837,1230,3068:21,17,28,20 ./.:.:52:96:52:0,96,1322,96,1322,1322 +20 10024108 . G . . END=10024151 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:48:99:44:0,107,1367 +20 10024152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:46:88:46:0,88,1315 +20 10024153 . T . . END=10024229 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:46:99:38:0,100,1106 +20 10024230 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:43:95:43:0,95,1181 +20 10024231 . A . . END=10024241 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:40:99:37:0,100,1135 +20 10024242 . G . . END=10024243 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:80:36:0,80,1010 +20 10024244 . T . . END=10024254 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:99:38:0,99,1121 +20 10024255 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:38:97:38:0,97,1172 +20 10024256 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:86:39:0,86,1127 +20 10024257 . A . . END=10024259 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:99:38:0,99,1485 +20 10024260 . G . . END=10024270 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:91:36:0,91,1058 +20 10024271 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:36:88:36:0,88,1111 +20 10024272 . T . . END=10024274 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:38:93:37:0,93,1395 +20 10024275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:36:84:36:0,84,1096 +20 10024276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:35:96:35:0,96,1440 +20 10024277 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:34:81:34:0,81,1012 +20 10024278 . T . . END=10024282 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:93:31:0,93,940 +20 10024283 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:0:62:0,0,1777 ./.:36:48:36:0,48,951 +20 10024284 . T . . END=10024287 GT:DP:GQ:MIN_DP:PL ./.:71:99:65:0,120,1800 ./.:39:81:37:0,81,1215 +20 10024288 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:0:71:0,0,1411 ./.:36:73:36:0,73,1048 +20 10024289 . T . . END=10024293 GT:DP:GQ:MIN_DP:PL ./.:72:99:70:0,120,1800 ./.:38:81:37:0,81,1131 +20 10024294 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:0:69:0,0,1358 ./.:35:37:35:0,37,903 +20 10024295 . T . . END=10024296 GT:DP:GQ:MIN_DP:PL ./.:68:99:67:0,120,1800 ./.:36:75:36:0,75,1125 +20 10024297 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:65:68:0,65,2188 ./.:36:75:36:0,75,1125 +20 10024298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:59:66:0,59,2080 ./.:36:75:36:0,75,1125 +20 10024299 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:0:62:0,0,1480 ./.:34:69:34:0,69,1035 +20 10024300 . CTT C,CT,CTTTT, . . BaseQRankSum=2.45;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=231195,77;ReadPosRankSum=-1.073e+00 GT:AD:DP:GQ:PL:SB ./.:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 ./.:7,0,5,0,0:12:65:65,85,180,0,95,80,85,180,95,180,85,180,95,180,180:7,0,1,4 +20 10024301 . T *, . . DP=77 GT:AD:DP:GQ:PL:SB ./.:3,3,0:18:1:122,91,231,161,257,347:1,2,11,4 ./.:7,5,0:12:65:65,0,80,85,95,180:7,0,1,4 +20 10024302 . T *, . . DP=86 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,3,0:18:1:.:122,91,231,161,257,347:1,2,11,4 ./.:.:36:0:36:0,0,684,0,684,684 +20 10024303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:57:67:0,57,855 ./.:33:33:30:0,33,495 +20 10024304 . T . . END=10024307 GT:DP:GQ:MIN_DP:PL ./.:69:63:68:0,63,945 ./.:33:33:30:0,33,495 +20 10024308 . T . . END=10024310 GT:DP:GQ:MIN_DP:PL ./.:70:78:70:0,78,1170 ./.:33:33:30:0,33,495 +20 10024311 . T . . END=10024313 GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:33:33:30:0,33,495 +20 10024314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:31:36:31:0,36,540 +20 10024315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:72:66:0,72,1080 ./.:29:30:29:0,30,450 +20 10024316 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:60:62:0,60,900 ./.:30:33:30:0,33,495 +20 10024317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:60:62:0,60,900 ./.:31:36:31:0,36,540 +20 10024318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:60:62:0,60,900 ./.:33:45:33:0,45,675 +20 10024319 . T . . END=10024320 GT:DP:GQ:MIN_DP:PL ./.:63:72:62:0,72,1080 ./.:32:42:31:0,42,630 +20 10024321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:90:62:0,90,1350 ./.:32:42:31:0,42,630 +20 10024322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:69:60:0,69,2100 ./.:30:45:30:0,45,675 +20 10024323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:27:56:0,27,1860 ./.:28:54:28:0,54,810 +20 10024324 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:0:53:0,0,1491 ./.:25:45:25:0,45,733 +20 10024325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:47:33:47:0,33,1611 ./.:22:57:22:0,57,855 +20 10024326 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:58:44:0,58,1605 ./.:22:13:22:0,13,583 +20 10024327 . G . . END=10024338 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:22:60:21:0,60,634 +20 10024339 . C . . END=10024347 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:26:72:25:0,72,808 +20 10024348 . C . . END=10024350 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:28:81:28:0,81,935 +20 10024351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:57:29:0,57,878 +20 10024352 . G . . END=10024357 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:84:28:0,84,853 +20 10024358 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:68:29:0,68,846 +20 10024359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:30:90:30:0,90,982 +20 10024360 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:28:84:28:0,84,898 +20 10024361 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:30:90:30:0,90,934 +20 10024362 . A . . END=10024363 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:87:29:0,87,876 +20 10024364 . T . . END=10024378 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:90:30:0,90,909 +20 10024379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:84:32:0,84,1006 +20 10024380 . C . . END=10024386 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:90:32:0,90,1350 +20 10024387 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:73:32:0,73,954 +20 10024388 . C T, . . BaseQRankSum=-9.240e-01;ClippingRankSum=0.00;DP=67;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=0.267 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:39:0,105,1509,105,1509,1509 ./.:13,14,0:27:99:.:351,0,344,390,386,776:4,9,5,9 +20 10024389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:73:33:0,73,1021 +20 10024390 . T . . END=10024405 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:93:31:0,93,987 +20 10024406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:74:33:0,74,988 +20 10024407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:96:33:0,96,1440 +20 10024408 . G . . END=10024419 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:99:33:0,99,1052 +20 10024420 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:86:34:0,86,1056 +20 10024421 . C . . END=10024426 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:99:34:0,99,1485 +20 10024427 . C . . END=10024428 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:96:35:0,96,1440 +20 10024429 . C . . END=10024431 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:99:35:0,99,1485 +20 10024432 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,944 +20 10024433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:35:0,102,1530 +20 10024434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:88:35:0,88,1024 +20 10024435 . T . . END=10024438 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:33:0,99,1043 +20 10024439 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:94:35:0,94,1088 +20 10024440 . G . . END=10024452 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:34:0,101,980 +20 10024453 . C . . END=10024454 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:96:35:0,96,1440 +20 10024455 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:99:36:0,99,1485 +20 10024456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:91:34:0,91,1014 +20 10024457 . C . . END=10024461 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:81:35:0,81,1215 +20 10024462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:75:36:0,75,1125 +20 10024463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:81:38:0,81,1215 +20 10024464 . G . . END=10024467 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:72:35:0,72,1080 +20 10024468 . C . . END=10024470 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:69:28:0,69,1035 +20 10024471 . T . . END=10024472 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:75:32:0,75,1125 +20 10024473 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:81:32:0,81,1215 +20 10024474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024475 . T . . END=10024476 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:87:35:0,87,1305 +20 10024477 . T . . END=10024484 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:33:0,90,1350 +20 10024485 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:81:32:0,81,1006 +20 10024486 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:68:34:0,68,1018 +20 10024488 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:73:33:0,73,992 +20 10024490 . T . . END=10024497 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:32:0,90,1350 +20 10024498 . A . . END=10024502 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:87:31:0,87,1305 +20 10024503 . G . . END=10024504 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:33:0,90,1350 +20 10024505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:82:31:0,82,919 +20 10024506 . T . . END=10024507 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:90:30:0,90,929 +20 10024508 . A . . END=10024509 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:82:33:0,82,959 +20 10024510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:96:33:0,96,1440 +20 10024511 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:66:32:0,66,957 +20 10024512 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:96:32:0,96,1049 +20 10024513 . G . . END=10024519 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:33:0,99,1011 +20 10024520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:91:36:0,91,1049 +20 10024521 . G . . END=10024586 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:34:0,101,1018 +20 10024587 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:46:97:46:0,97,1292 +20 10024588 . G . . END=10024618 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:46:99:41:0,111,1272 +20 10024619 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:96:43:0,96,1228 +20 10024620 . A . . END=10024639 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:39:0,99,1097 +20 10024640 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:98:38:0,98,1151 +20 10024641 . T . . END=10024664 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:99:37:0,104,1150 +20 10024665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:97:40:0,97,1220 +20 10024666 . C . . END=10024671 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:40:0,111,1262 +20 10024672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:80:42:0,80,1185 +20 10024673 . C . . END=10024674 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,120,1800 +20 10024675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:97:42:0,97,1180 +20 10024676 . A . . END=10024687 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:41:0,111,1253 +20 10024688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:98:43:0,98,1210 +20 10024689 . T . . END=10024714 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:41:0,106,1194 +20 10024715 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1102 +20 10024716 . A . . END=10024720 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:39:0,100,1161 +20 10024721 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:88:40:0,88,1124 +20 10024722 . T . . END=10024725 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:40:0,109,1224 +20 10024726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:98:39:0,98,1190 +20 10024727 . G . . END=10024728 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,114,1166 +20 10024729 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:93:40:0,93,1223 +20 10024730 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:99:38:0,114,1159 +20 10024731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:96:40:0,96,1205 +20 10024732 . T . . END=10024949 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:52:99:39:0,113,1201 +20 10024950 . G T, . . BaseQRankSum=0.081;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.132 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:79:99:39:.:.:0,105,1509,105,1509,1509 ./.:17,24,0:41:99:.:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024951 . G T, . . BaseQRankSum=1.14;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=-8.000e-02 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:79:99:39:.:.:0,105,1509,105,1509,1509 ./.:17,24,0:41:99:.:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024952 . T . . END=10024960 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,108,1285 +20 10024961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:97:43:0,97,1253 +20 10024962 . T . . END=10025052 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:47:99:42:0,101,1265 +20 10025053 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:93:48:0,93,1357 +20 10025054 . A . . END=10025069 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:99:46:0,115,1465 +20 10025070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:44:92:44:0,92,1157 +20 10025071 . G . . END=10025131 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:99:40:0,108,1241 +20 10025132 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:97:39:0,97,1216 +20 10025133 . C . . END=10025143 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,102,1530 +20 10025144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:67:39:0,67,1051 +20 10025145 . A . . END=10025148 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,102,1530 +20 10025149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:96:37:0,96,1440 +20 10025150 . C . . END=10025191 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:37:0,99,1162 +20 10025192 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:87:41:0,87,1171 +20 10025193 . T . . END=10025253 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:38:0,100,1145 +20 10025254 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:97:42:0,97,1280 +20 10025255 . T . . END=10025322 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:99:41:0,101,1269 +20 10025323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:76:45:0,76,1262 +20 10025324 . A . . END=10025503 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:57:99:41:0,106,1429 +20 10025504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:92:42:0,92,1235 +20 10025505 . G . . END=10025518 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:40:0,102,1530 +20 10025519 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:90:41:0,90,1225 +20 10025520 . T . . END=10025521 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:99:41:0,102,1530 +20 10025522 . T . . END=10025523 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:90:39:0,90,1350 +20 10025524 . A . . END=10025530 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:84:34:0,84,1260 +20 10025531 . T . . END=10025532 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:93:36:0,93,1395 +20 10025533 . T . . END=10025555 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:99:34:0,99,1206 +20 10025556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:88:40:0,88,1189 +20 10025557 . T . . END=10025560 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,111,1665 +20 10025561 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:89:39:0,89,1192 +20 10025562 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1164 +20 10025563 . C . . END=10025569 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:39:0,102,1194 +20 10025570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1158 +20 10025571 . T . . END=10025573 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,108,1620 +20 10025574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:98:38:0,98,1174 +20 10025575 . T . . END=10025620 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:36:0,100,1147 +20 10025621 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:94:41:0,94,1223 +20 10025622 . A . . END=10025642 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:99:41:0,120,1800 +20 10025643 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:51:82:51:0,82,1440 +20 10025644 . A . . END=10026301 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:54:99:38:0,102,1165 +20 10026302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:86:38:0,86,1139 +20 10026303 . A . . END=10026307 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:99:37:0,105,1575 +20 10026308 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:85:38:0,85,1136 +20 10026309 . G . . END=10026313 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,111,1178 +20 10026314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:92:39:0,92,1157 +20 10026315 . G . . END=10026347 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:39:0,114,1331 +20 10026348 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:92:41:0,92,1279 +20 10026349 . A . . END=10026356 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,120,1800 +20 10026357 . T C, . . BaseQRankSum=-6.420e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=355517,102;ReadPosRankSum=1.62 GT:AD:DP:GQ:PL:SB ./.:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 ./.:19,19,0:38:99:494,0,521,552,578,1130:8,11,11,8 +20 10026358 . A . . END=10026383 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:42:0,102,1231 +20 10026384 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:75:45:0,75,1206 +20 10026385 . A . . END=10026439 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:39:0,111,1254 +20 10026440 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:86:40:0,86,1172 +20 10026441 . A . . END=10026461 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:99:37:0,99,1485 +20 10026462 . T . . END=10026464 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:96:39:0,96,1440 +20 10026465 . C . . END=10026505 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:38:99:34:0,99,1053 +20 10026506 . C . . END=10026507 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:42:91:41:0,91,1173 +20 10026508 . C . . END=10026524 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:99:39:0,107,1246 +20 10026525 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:93:40:0,93,1190 +20 10026526 . C . . END=10026541 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:99:38:0,101,1176 +20 10026542 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:90:41:0,90,1244 +20 10026543 . G . . END=10026575 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:99:36:0,100,1149 +20 10026576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:38:97:38:0,97,1162 +20 10026577 . T . . END=10026599 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:99:37:0,101,1178 +20 10026600 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:91:41:0,91,1257 +20 10026601 . C . . END=10026696 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:39:0,104,1295 +20 10026697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:48:97:48:0,97,1363 +20 10026698 . C . . END=10026756 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:52:99:47:0,112,1425 +20 10026757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:54:98:54:0,98,1593 +20 10026758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:54:86:54:0,86,1535 +20 10026759 . C . . END=10026793 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:55:99:52:0,120,1800 +20 10026794 . C T, . . BaseQRankSum=2.83;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=371641,104;ReadPosRankSum=-5.330e-01 GT:AD:DP:GQ:PL:SB ./.:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 ./.:27,24,0:51:99:601,0,657,682,729,1411:15,12,11,13 +20 10026795 . G . . END=10027060 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:53:99:38:0,102,1116 +20 10027061 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:42:82:42:0,82,1170 +20 10027062 . T . . END=10027073 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:42:99:39:0,106,1243 +20 10027074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:97:44:0,97,1323 +20 10027075 . G . . END=10027080 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:47:99:47:0,120,1800 +20 10027081 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:91:46:0,91,1290 +20 10027082 . A . . END=10027193 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:99:40:0,101,1160 +20 10027194 . T . . END=10027201 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:90:45:0,90,1350 +20 10027202 . A . . END=10027203 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:48:87:48:0,87,1305 +20 10027204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:47:75:47:0,75,1125 +20 10027205 . T . . END=10027206 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:60:45:0,60,900 +20 10027207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:57:44:0,57,855 +20 10027208 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:54:44:0,54,810 +20 10027209 . T . . END=10027210 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:45:44:0,45,675 +20 10027211 . A . . END=10027212 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:42:44:0,42,630 +20 10027213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:33:45:0,33,495 +20 10027214 . G . . END=10027216 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:30:42:0,30,450 +20 10027217 . T . . END=10027219 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:27:44:0,27,405 +20 10027220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:24:43:0,24,360 +20 10027221 . T . . END=10027222 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:18:43:0,18,270 +20 10027223 . A . . END=10027225 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:41:15:41:0,15,225 +20 10027226 . A . . END=10027227 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:18:43:0,18,270 +20 10027228 . G . . END=10027229 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:15:43:0,15,225 +20 10027230 . A . . END=10027231 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:9:44:0,9,135 +20 10027232 . A . . END=10027233 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:12:45:0,12,180 +20 10027234 . A ATTAG, . . BaseQRankSum=-4.060e-01;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.375;RAW_MQandDP=388151,113;ReadPosRankSum=0.211 GT:AD:DP:GQ:PL:SB ./.:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 ./.:1,40,0:41:65:1767,65,0,1770,126,1832:0,1,19,21 +20 10027235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:0:45:0,0,0 +20 10027236 . T . . END=10027304 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:99:41:0,114,1710 +20 10027305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:47:97:47:0,97,1267 +20 10027306 . C . . END=10027327 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:44:99:40:0,108,1208 +20 10027328 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:94:41:0,94,1286 +20 10027329 . T . . END=10027355 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:42:99:39:0,101,1207 +20 10027356 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:86:45:0,86,1212 +20 10027357 . T . . END=10027512 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:99:39:0,100,1167 +20 10027513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:90:41:0,90,1256 +20 10027514 . C . . END=10027517 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:40:99:39:0,100,1146 +20 10027518 . C . . END=10027519 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:91:41:0,91,1178 +20 10027520 . T . . END=10027551 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:99:38:0,105,1159 +20 10027552 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:38:95:38:0,95,1089 +20 10027553 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:37:99:37:0,111,1163 +20 10027554 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:37:86:37:0,86,1078 +20 10027555 . C . . END=10027801 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:49:99:36:0,100,1146 +20 10027802 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:88:41:0,88,1215 +20 10027803 . T . . END=10027867 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:50:99:42:0,115,1296 +20 10027868 . A G, . . BaseQRankSum=-4.141e+00;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.032;RAW_MQandDP=476882,134;ReadPosRankSum=1.87 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 ./.:19,24,0:43:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:10,9,14,10 +20 10027869 . A . . END=10027871 GT:DP:GQ:MIN_DP:PL ./.:86:99:85:0,120,1800 ./.:48:99:46:0,120,1800 +20 10027872 . A G, . . BaseQRankSum=-8.550e-01;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.101;RAW_MQandDP=458882,129;ReadPosRankSum=1.05 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 ./.:18,24,0:42:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:9,9,14,10 +20 10027873 . G . . END=10027989 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:41:0,105,1244 +20 10027990 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:75:42:0,75,1081 +20 10027991 . G . . END=10028073 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:38:0,103,1137 +20 10028074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:91:42:0,91,1216 +20 10028075 . G . . END=10028079 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:40:0,99,1485 +20 10028080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:96:39:0,96,1440 +20 10028081 . A . . END=10028082 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:40:0,99,1485 +20 10028083 . A . . END=10028087 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:93:36:0,93,1395 +20 10028088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,99,1485 +20 10028089 . A . . END=10028096 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:93:33:0,93,1395 +20 10028097 . C . . END=10028102 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:35:0,99,1485 +20 10028103 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:96:36:0,96,1440 +20 10028104 . A . . END=10028111 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10028112 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:34:87:34:0,87,1062 +20 10028113 . T . . END=10028116 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:35:0,105,1108 +20 10028117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:82:36:0,82,1102 +20 10028118 . T . . END=10028121 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:36:0,105,1156 +20 10028122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:97:36:0,97,1074 +20 10028123 . A . . END=10028126 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10028127 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10028128 . C . . END=10028146 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:33:0,99,1013 +20 10028147 . T . . END=10028155 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:90:34:0,90,1350 +20 10028156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10028157 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:93:36:0,93,1395 +20 10028158 . T . . END=10028180 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:99:36:0,99,1152 +20 10028181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:43:95:43:0,95,1209 +20 10028182 . A . . END=10028301 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:40:0,105,1274 +20 10028302 . G T, . . BaseQRankSum=1.50;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=0.800 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:80:99:55:.:.:0,120,1800,120,1800,1800 ./.:30,18,0:48:99:.:0|1:10028302_G_T:634,0,1476,724,1533,2257:14,16,14,4 +20 10028303 . T . . END=10028315 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:42:0,114,1334 +20 10028316 . C T, . . BaseQRankSum=0.911;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=-7.190e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:80:99:55:.:.:0,120,1800,120,1800,1800 ./.:25,17,0:42:99:.:0|1:10028302_G_T:621,0,1379,699,1433,2132:12,13,12,5 +20 10028317 . T . . END=10028346 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:99:38:0,108,1238 +20 10028347 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:98:38:0,98,1149 +20 10028348 . C . . END=10028351 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:36:0,102,1166 +20 10028352 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:98:37:0,98,1166 +20 10028353 . G . . END=10028370 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:99:36:0,102,1530 +20 10028371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:83:39:0,83,1138 +20 10028372 . T . . END=10028400 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:38:0,101,1234 +20 10028401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:90:36:0,90,1052 +20 10028402 . C . . END=10028723 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:99:35:0,99,1112 +20 10028724 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:97:38:0,97,1170 +20 10028725 . A G, . . BaseQRankSum=-2.165e+00;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.184 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:55:0,120,1800,120,1800,1800 ./.:17,19,0:36:99:.:467,0,436,518,493,1011:8,9,8,11 +20 10028726 . T . . END=10028727 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:37:0,99,1485 +20 10028728 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:96:37:0,96,1440 +20 10028729 . A . . END=10028738 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:33:0,99,1002 +20 10028739 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:77:35:0,77,1058 +20 10028740 . T . . END=10028756 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:36:0,99,1485 +20 10028757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:94:37:0,94,1057 +20 10028758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,108,1620 +20 10028759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:88:35:0,88,1026 +20 10028760 . T . . END=10028779 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:37:0,101,1079 +20 10028780 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:78:40:0,78,1111 +20 10028781 . A . . END=10028847 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:99:40:0,99,1209 +20 10028848 . T . . END=10028849 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:93:45:0,93,1395 +20 10028850 . T . . END=10028852 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:43:81:41:0,81,1215 +20 10028853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:78:44:0,78,1170 +20 10028854 . C . . END=10028865 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:63:39:0,63,945 +20 10028866 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:32:39:0,32,952 +20 10028867 . A ATG, . . BaseQRankSum=-6.100e-02;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=2.71;RAW_MQandDP=471041,128;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL:SB ./.:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 ./.:13,19,0:32:99:584,0,361,623,421,1045:6,7,9,10 +20 10028868 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:0:40:0,0,31 +20 10028869 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:95:41:0,95,1143 +20 10028870 . T . . END=10028871 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:80:41:0,80,1120 +20 10028872 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:42:70:42:0,70,1196 +20 10028873 . G . . END=10028897 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:37:0,99,1282 +20 10028898 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:95:38:0,95,1219 +20 10028899 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:81:38:0,81,1126 +20 10028900 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:99:38:0,102,1530 +20 10028901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:86:38:0,86,1128 +20 10028902 . T . . END=10028906 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:37:0,102,1530 +20 10028907 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:37:0,90,1087 +20 10028908 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,99,1167 +20 10028909 . A . . END=10028910 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:93:37:0,93,1075 +20 10028911 . T . . END=10028964 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:37:0,100,1119 +20 10028965 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:98:37:0,98,1084 +20 10028966 . T . . END=10028970 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,105,1575 +20 10028971 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1071 +20 10028972 . A . . END=10028983 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:36:0,99,1485 +20 10028984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:79:37:0,79,1131 +20 10028985 . G . . END=10028989 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:37:0,105,1575 +20 10028990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:98:39:0,98,1204 +20 10028991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:39:0,114,1710 +20 10028992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:97:39:0,97,1160 +20 10028993 . A . . END=10029056 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:36:0,99,1151 +20 10029057 . A . . END=10029064 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:34:0,90,1121 +20 10029065 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:89:35:0,89,1070 +20 10029066 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029067 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:79:35:0,79,1018 +20 10029068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:72:34:0,72,981 +20 10029070 . T . . END=10029071 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:86:33:0,86,1056 +20 10029072 . A . . END=10029074 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:33:0,90,1350 +20 10029075 . C . . END=10029076 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:80:34:0,80,990 +20 10029077 . C . . END=10029078 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:36:0,90,1350 +20 10029079 . T . . END=10029088 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:36:0,102,1108 +20 10029089 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:96:39:0,96,1229 +20 10029090 . A . . END=10029103 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:44:99:39:0,108,1373 +20 10029104 . G A, . . DP=103;ExcessHet=3.01;RAW_MQandDP=154800,43 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:60:0,120,1800,120,1800,1800 ./.:0,43,0:43:99:.:1347,128,0,1347,128,1347:0,0,21,22 +20 10029105 . T . . END=10029341 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:48:99:42:0,113,1270 +20 10029342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:43:96:43:0,96,1194 +20 10029343 . T . . END=10029376 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:45:99:42:0,99,1221 +20 10029377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:79:41:0,79,1184 +20 10029378 . A . . END=10029385 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:39:0,111,1665 +20 10029386 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:70:40:0,70,1172 +20 10029387 . A . . END=10029645 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:49:99:36:0,101,1238 +20 10029646 . G . . END=10029662 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:92:33:0,92,1120 +20 10029663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:69:34:0,69,1031 +20 10029664 . G . . END=10029665 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:90:33:0,90,1350 +20 10029666 . A . . END=10029673 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:87:31:0,87,1305 +20 10029674 . T . . END=10029678 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:32:0,90,1049 +20 10029679 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,982 +20 10029680 . C . . END=10029681 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:87:32:0,87,1305 +20 10029682 . G . . END=10029692 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:90:32:0,90,1350 +20 10029693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:77:31:0,77,980 +20 10029694 . A . . END=10029695 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:90:31:0,90,1350 +20 10029696 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:50:32:0,50,959 +20 10029697 . T . . END=10029698 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10029699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:73:33:0,73,1033 +20 10029700 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:33:0,84,1053 +20 10029701 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10029702 . G . . END=10029714 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:84:29:0,84,1260 +20 10029715 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:76:29:0,76,904 +20 10029716 . T . . END=10029717 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10029718 . C . . END=10029719 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:30:76:29:0,76,895 +20 10029720 . T . . END=10029729 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:30:0,90,971 +20 10029730 . A . . END=10029731 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:81:32:0,81,976 +20 10029732 . G . . END=10029734 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:96:33:0,96,1440 +20 10029735 . C . . END=10029741 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:33:0,84,1260 +20 10029742 . C . . END=10029746 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:90:31:0,90,1350 +20 10029747 . G . . END=10029765 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:33:0,99,1011 +20 10029766 . T . . END=10029769 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:96:36:0,96,1440 +20 10029770 . A . . END=10029772 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,99,1485 +20 10029773 . A . . END=10029775 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029776 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:87:35:0,87,1039 +20 10029777 . C . . END=10029778 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:96:34:0,96,1107 +20 10029779 . A . . END=10029783 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:35:0,99,1485 +20 10029784 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:78:36:0,78,1028 +20 10029785 . A . . END=10029789 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10029790 . T . . END=10029791 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:34:0,90,1073 +20 10029792 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:85:34:0,85,959 +20 10029793 . T . . END=10029797 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:92:34:0,92,1040 +20 10029798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:76:37:0,76,1067 +20 10029799 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:92:36:0,92,1089 +20 10029800 . A . . END=10029810 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10029811 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:84:37:0,84,1058 +20 10029812 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,111,1172 +20 10029813 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:96:36:0,96,1080 +20 10029814 . A . . END=10029815 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:35:0,105,949 +20 10029816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:79:35:0,79,916 +20 10029817 . T . . END=10029828 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:36:0,102,1069 +20 10029829 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:96:40:0,96,1227 +20 10029830 . A . . END=10029835 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:36:0,105,1062 +20 10029836 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:83:38:0,83,1083 +20 10029837 . A . . END=10029847 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:37:0,100,1122 +20 10029848 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:89:41:0,89,1125 +20 10029849 . A . . END=10029850 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:96:38:0,96,1077 +20 10029851 . A . . END=10030033 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:46:99:35:0,99,1185 +20 10030034 . T . . END=10030036 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10030037 . G . . END=10030044 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:34:0,99,1485 +20 10030045 . C . . END=10030046 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10030047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:87:34:0,87,1305 +20 10030048 . G . . END=10030049 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:36:0,90,1350 +20 10030050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:87:37:0,87,1305 +20 10030051 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:90:38:0,90,1350 +20 10030052 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:87:37:0,87,1305 +20 10030053 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:90:38:0,90,1350 +20 10030054 . G . . END=10030058 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:84:34:0,84,1013 +20 10030059 . A . . END=10030061 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:72:31:0,72,1080 +20 10030062 . T . . END=10030069 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:69:28:0,69,1035 +20 10030070 . A . . END=10030093 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:27:70:25:0,70,716 +20 10030094 . G . . END=10030095 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:27:65:27:0,65,800 +20 10030096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:81:28:0,81,1215 +20 10030097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:67:28:0,67,838 +20 10030098 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:84:28:0,84,890 +20 10030099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:69:28:0,69,806 +20 10030100 . G . . END=10030104 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:84:28:0,84,799 +20 10030105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,916 +20 10030106 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:93:32:0,93,1395 +20 10030107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:80:32:0,80,971 +20 10030108 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:56:32:0,56,911 +20 10030109 . G . . END=10030114 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10030115 . A . . END=10030116 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:33:0,99,1078 +20 10030117 . C . . END=10030127 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:32:0,90,1064 +20 10030128 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,863 +20 10030129 . C . . END=10030139 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:31:0,84,1260 +20 10030140 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:78:32:0,78,939 +20 10030141 . A . . END=10030142 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:60:32:0,60,907 +20 10030143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:84:32:0,84,977 +20 10030144 . C . . END=10030145 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:30:71:30:0,71,845 +20 10030146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:65:31:0,65,939 +20 10030147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:53:33:0,53,926 +20 10030148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10030149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:64:33:0,64,971 +20 10030150 . T . . END=10030151 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:72:34:0,72,1016 +20 10030152 . A . . END=10030153 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10030154 . C . . END=10030155 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:90:35:0,90,1069 +20 10030156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:36:0,105,1575 +20 10030157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:85:34:0,85,1041 +20 10030158 . C . . END=10030159 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:34:0,102,1073 +20 10030160 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1111 +20 10030161 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10030162 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:89:36:0,89,1120 +20 10030163 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1097 +20 10030164 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:36:0,105,1575 +20 10030165 . A . . END=10030166 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:95:37:0,95,1154 +20 10030167 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:84:38:0,84,1139 +20 10030168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:99:38:0,103,1176 +20 10030169 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:84:38:0,84,1185 +20 10030170 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:76:36:0,76,1074 +20 10030171 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:81:37:0,81,1102 +20 10030172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,105,1575 +20 10030173 . A . . END=10030174 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:83:37:0,83,1153 +20 10030175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:91:36:0,91,1135 +20 10030176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1094 +20 10030177 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1076 +20 10030178 . C . . END=10030180 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:77:36:0,77,1047 +20 10030181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:80:37:0,80,1108 +20 10030182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,102,1530 +20 10030183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:78:36:0,78,1000 +20 10030184 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1062 +20 10030185 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:85:37:0,85,1094 +20 10030186 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:92:37:0,92,1125 +20 10030187 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1025 +20 10030188 . T A, . . BaseQRankSum=1.36;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=404041,113;ReadPosRankSum=0.917 GT:AD:DP:GQ:PL:SB ./.:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 ./.:16,15,0:31:99:414,0,398,461,443,905:9,7,10,5 +20 10030189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:77:36:0,77,1082 +20 10030190 . T . . END=10030192 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:93:36:0,93,1395 +20 10030193 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:79:35:0,79,1082 +20 10030194 . C . . END=10030197 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:90:32:0,90,1350 +20 10030198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:85:33:0,85,936 +20 10030199 . A . . END=10030205 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:30:0,90,946 +20 10030206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:81:31:0,81,985 +20 10030207 . C . . END=10030216 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:90:31:0,90,942 +20 10030217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:83:34:0,83,907 +20 10030218 . T . . END=10030225 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:90:31:0,90,1350 +20 10030226 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:83:33:0,83,999 +20 10030227 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:74:32:0,74,996 +20 10030228 . G . . END=10030230 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:93:32:0,93,1395 +20 10030231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:70:32:0,70,939 +20 10030232 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:83:32:0,83,939 +20 10030233 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:72:31:0,72,933 +20 10030234 . C . . END=10030237 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:85:31:0,85,1014 +20 10030238 . C . . END=10030239 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:90:32:0,90,1350 +20 10030240 . G . . END=10030255 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:81:29:0,81,1215 +20 10030256 . T . . END=10030272 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:29:75:26:0,75,803 +20 10030273 . A . . END=10030275 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:26:69:26:0,69,1035 +20 10030276 . C . . END=10030282 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:27:72:26:0,72,821 +20 10030283 . A . . END=10030285 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:28:81:28:0,81,1215 +20 10030286 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:29:76:29:0,76,868 +20 10030287 . A . . END=10030289 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:81:28:0,81,1215 +20 10030290 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:68:30:0,68,839 +20 10030291 . C . . END=10030302 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:81:30:0,81,1215 +20 10030303 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,1350 +20 10030304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:61:30:0,61,852 +20 10030305 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:82:32:0,82,923 +20 10030306 . G . . END=10030308 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,923 +20 10030309 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:77:31:0,77,873 +20 10030310 . G . . END=10030316 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:30:0,90,952 +20 10030317 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:66:32:0,66,924 +20 10030318 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:75:31:0,75,883 +20 10030319 . G . . END=10030320 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,1350 +20 10030321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:87:31:0,87,1305 +20 10030322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:90:32:0,90,1350 +20 10030323 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:85:32:0,85,948 +20 10030324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:69:33:0,69,963 +20 10030325 . G . . END=10030329 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:93:33:0,93,1395 +20 10030330 . C . . END=10030335 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:99:33:0,99,1016 +20 10030336 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:94:35:0,94,1045 +20 10030337 . C . . END=10030349 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:99:34:0,99,1027 +20 10030350 . T . . END=10030352 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:96:33:0,96,1440 +20 10030353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:73:35:0,73,980 +20 10030354 . T . . END=10030372 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:99:34:0,99,1112 +20 10030373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:92:42:0,92,1109 +20 10030374 . G . . END=10030446 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:44:99:40:0,105,1175 +20 10030447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:97:42:0,97,1094 +20 10030448 . T . . END=10030451 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:99:41:0,115,1265 +20 10030452 . G A, . . BaseQRankSum=-1.085e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=-4.040e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:41:0,103,1575,103,1575,1575 ./.:12,28,0:40:99:.:768,0,241,804,325,1129:8,4,15,13 +20 10030453 . A . . END=10030477 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:44:99:40:0,102,1208 +20 10030478 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:41:90:41:0,90,1197 +20 10030479 . G . . END=10030505 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:43:99:39:0,100,1192 +20 10030506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:39:97:39:0,97,1157 +20 10030507 . C . . END=10030510 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:38:99:37:0,105,1190 +20 10030511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:93:37:0,93,1101 +20 10030512 . C . . END=10030530 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:99:36:0,102,1138 +20 10030531 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:38:98:38:0,98,1111 +20 10030532 . C . . END=10030566 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:48:99:35:0,100,1034 +20 10030567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1511 ./.:48:99:35:0,100,1034 +20 10030568 . C . . END=10030806 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:48:99:35:0,100,1034 +20 10030807 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:42:95:42:0,95,1192 +20 10030808 . A . . END=10030810 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:42:99:40:0,100,1109 +20 10030811 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:42:77:42:0,77,1172 +20 10030812 . C . . END=10030821 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:41:99:39:0,102,1136 +20 10030822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:41:93:41:0,93,1272 +20 10030823 . G . . END=10030830 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:99:37:0,102,1530 +20 10030831 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:90:38:0,90,1130 +20 10030832 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:99:37:0,102,1530 +20 10030833 . A . . END=10030835 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:93:38:0,93,1110 +20 10030836 . T . . END=10030837 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:40:99:39:0,99,1485 +20 10030838 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:96:39:0,96,1440 +20 10030839 . T . . END=10030845 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:37:0,99,1211 +20 10030846 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:96:37:0,96,1440 +20 10030847 . C . . END=10030856 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:99:35:0,99,1153 +20 10030857 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:91:36:0,91,1079 +20 10030858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:88:37:0,88,1142 +20 10030859 . G . . END=10030930 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:50:99:36:0,107,1094 +20 10030931 . C A, . . BaseQRankSum=3.73;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=-2.630e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,114,1710,114,1710,1710 ./.:31,22,0:53:99:.:571,0,659,662,725,1387:13,18,5,17 +20 10030932 . G . . END=10031065 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:55:99:37:0,99,1132 +20 10031066 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:89:35:0,89,978 +20 10031067 . T . . END=10031069 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:37:0,99,1176 +20 10031070 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:92:39:0,92,1148 +20 10031071 . T . . END=10031078 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:99:38:0,99,1485 +20 10031079 . G . . END=10031080 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:92:37:0,92,1127 +20 10031081 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:48:36:0,48,972 +20 10031082 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:93:36:0,93,1395 +20 10031083 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:38:0,99,1485 +20 10031084 . T . . END=10031087 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:96:37:0,96,1440 +20 10031088 . A . . END=10031089 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:37:0,99,1485 +20 10031090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:87:36:0,87,1125 +20 10031091 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:99:36:0,99,1485 +20 10031092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:78:35:0,78,1081 +20 10031093 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:93:34:0,93,1395 +20 10031094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:99:36:0,99,1485 +20 10031095 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:96:36:0,96,1150 +20 10031096 . A . . END=10031098 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:35:0,99,1485 +20 10031099 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:94:35:0,94,1081 +20 10031100 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:89:35:0,89,1049 +20 10031101 . T . . END=10031103 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:34:0,99,1485 +20 10031104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:32:60:32:0,60,869 +20 10031105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:33:96:33:0,96,1440 +20 10031106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:33:84:33:0,84,1023 +20 10031107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:33:96:33:0,96,1440 +20 10031108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:99:34:0,99,1485 +20 10031109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:70:34:0,70,1079 +20 10031110 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:96:34:0,96,1440 +20 10031111 . A . . END=10031113 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:35:0,99,1485 +20 10031114 . T . . END=10031115 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:93:35:0,93,1395 +20 10031116 . T . . END=10031118 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:99:37:0,99,1485 +20 10031119 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:79:38:0,79,1132 +20 10031120 . T . . END=10031130 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:38:0,102,1166 +20 10031131 . G . . END=10031136 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:96:34:0,96,1440 +20 10031137 . T . . END=10031139 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:99:35:0,99,1485 +20 10031140 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:96:34:0,96,1440 +20 10031141 . G . . END=10031145 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:99:33:0,99,1015 +20 10031146 . A . . END=10031147 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:90:34:0,90,1001 +20 10031148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:35:0,102,1530 +20 10031149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:94:35:0,94,1074 +20 10031150 . G . . END=10031164 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:34:0,99,1037 +20 10031165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:82:39:0,82,1110 +20 10031166 . A . . END=10031167 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:40:99:39:0,100,1169 +20 10031168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:43:96:43:0,96,1323 +20 10031169 . T . . END=10031174 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:44:99:43:0,102,1349 +20 10031175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:46:92:46:0,92,1319 +20 10031176 . T . . END=10031225 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:47:99:42:0,99,1288 +20 10031226 . T . . END=10031234 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:49:90:46:0,90,1350 +20 10031235 . T . . END=10031239 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:48:84:47:0,84,1260 +20 10031240 . G . . END=10031253 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:47:75:43:0,75,1125 +20 10031254 . A AT, . . BaseQRankSum=0.497;ClippingRankSum=0.00;DP=131;ExcessHet=3.01;MQRankSum=0.017;RAW_MQandDP=469210,131;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL:SB ./.:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 ./.:23,19,0:42:99:583,0,725,653,782,1435:12,11,8,11 +20 10031255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:86:0,120,1800 ./.:48:0:48:0,0,216 +20 10031256 . G . . END=10031341 GT:DP:GQ:MIN_DP:PL ./.:95:99:86:0,120,1800 ./.:48:99:45:0,105,1321 +20 10031342 . G A, . . BaseQRankSum=3.43;ClippingRankSum=0.00;DP=138;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=494041,138;ReadPosRankSum=0.857 GT:AD:DP:GQ:PL:SB ./.:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 ./.:22,23,0:45:99:620,0,534,685,603,1288:12,10,10,13 +20 10031343 . A . . END=10031432 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:45:99:37:0,100,1121 +20 10031433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:82:38:0,82,1143 +20 10031434 . T . . END=10031451 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:99:35:0,99,1089 +20 10031452 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:88:36:0,88,1094 +20 10031453 . G . . END=10031457 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:99:36:0,108,1090 +20 10031458 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:97:36:0,97,1097 +20 10031459 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:35:99:35:0,104,1042 +20 10031460 . T . . END=10031462 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:93:35:0,93,1395 +20 10031463 . A . . END=10031498 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:36:0,99,1103 +20 10031499 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:41:77:41:0,77,1157 +20 10031500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:40:0,102,1530 +20 10031501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:79:39:0,79,1111 +20 10031502 . C . . END=10031506 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:99:36:0,99,1485 +20 10031507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:96:38:0,96,1049 +20 10031508 . T . . END=10031510 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:99:36:0,105,1575 +20 10031511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:97:37:0,97,1148 +20 10031512 . A . . END=10031521 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:38:0,101,1126 +20 10031522 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:96:38:0,96,1122 +20 10031523 . C . . END=10031764 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:46:99:38:0,101,1152 +20 10031765 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:98:38:0,98,1100 +20 10031766 . T . . END=10031769 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:38:0,105,1575 +20 10031770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:94:40:0,94,1184 +20 10031771 . A . . END=10031772 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:39:0,108,1213 +20 10031773 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:94:40:0,94,1227 +20 10031774 . T . . END=10031794 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:39:0,99,1153 +20 10031795 . G . . END=10031797 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:93:37:0,93,1395 +20 10031798 . G A, . . DP=138;ExcessHet=3.01;RAW_MQandDP=491810,138 GT:AD:DP:GQ:PL:SB ./.:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 ./.:0,34,0:34:99:1056,102,0,1056,102,1056:0,0,15,19 +20 10031799 . T . . END=10031813 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:35:90:33:0,90,1056 +20 10031814 . A . . END=10031818 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:33:87:33:0,87,1305 +20 10031819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:31:90:31:0,90,1350 +20 10031820 . T . . END=10031822 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:34:87:32:0,87,1305 +20 10031823 . T . . END=10031825 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:32:93:32:0,93,1395 +20 10031826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:32:85:32:0,85,980 +20 10031827 . C T, . . BaseQRankSum=3.55;ClippingRankSum=0.00;DP=140;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=501769,140;ReadPosRankSum=-6.750e-01 GT:AD:DP:GQ:PL:SB ./.:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 ./.:18,13,0:31:99:317,0,456,371,495,866:8,10,4,9 +20 10031828 . T . . END=10031832 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:35:90:33:0,90,1350 +20 10031833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:37:0,99,1485 +20 10031834 . G . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10031835 . T . . END=10031842 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:99:35:0,99,1485 +20 10031843 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:35:94:35:0,94,1081 +20 10031844 . G . . END=10031913 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:34:0,99,1079 +20 10031914 . A . . END=10031915 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10031916 . T . . END=10031953 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:34:0,99,1057 +20 10031954 . A . . END=10031960 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:90:34:0,90,1037 +20 10031961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:79:37:0,79,1088 +20 10031962 . A . . END=10031969 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:93:36:0,93,1395 +20 10031970 . A . . END=10031989 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:36:0,99,1132 +20 10031990 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:95:37:0,95,1146 +20 10031991 . G . . END=10032010 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:37:0,102,1180 +20 10032011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:76:40:0,76,1104 +20 10032012 . A . . END=10032093 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:45:99:38:0,101,1140 +20 10032094 . G A, . . BaseQRankSum=5.49;ClippingRankSum=0.00;DP=132;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=475200,132;ReadPosRankSum=0.092 GT:AD:DP:GQ:PL:SB ./.:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 ./.:21,27,0:48:99:677,0,458,740,539,1279:12,9,17,10 +20 10032095 . T . . END=10032168 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:47:99:41:0,102,1220 +20 10032169 . C . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:41:92:41:0,92,1152 +20 10032170 . A . . END=10032186 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:43:99:42:0,110,1209 +20 10032187 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:42:94:42:0,94,1252 +20 10032188 . A . . END=10032199 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:41:99:40:0,100,1156 +20 10032200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:95:39:0,95,1190 +20 10032201 . G . . END=10032205 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:40:99:39:0,99,1156 +20 10032206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:82:39:0,82,1115 +20 10032207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:99:39:0,105,1575 +20 10032208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:90:39:0,90,1205 +20 10032209 . T . . END=10032221 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:99:39:0,101,1150 +20 10032222 . T . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:37:87:37:0,87,1065 +20 10032223 . A . . END=10032232 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:36:99:35:0,102,1029 +20 10032233 . G . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:38:98:38:0,98,1078 +20 10032234 . A . . END=10032243 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:40:99:38:0,105,1150 +20 10032244 . T . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:91:39:0,91,1186 +20 10032245 . T . . END=10032412 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:50:99:40:0,104,1180 +20 10032413 . T G, . . BaseQRankSum=-2.742e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=413138,116;ReadPosRankSum=-1.110e-01 GT:AD:DP:GQ:PL:SB ./.:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 ./.:23,26,0:49:99:565,0,554,634,631,1265:14,9,17,9 +20 10032414 . T . . END=10032599 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:54:99:42:0,120,1800 +20 10032600 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:45:97:45:0,97,1324 +20 10032601 . C . . END=10032646 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:47:99:44:0,104,1291 +20 10032647 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:46:82:46:0,82,1238 +20 10032648 . G . . END=10032824 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:48:99:35:0,99,1056 +20 10032825 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:95:38:0,95,1066 +20 10032826 . A . . END=10032829 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:40:99:39:0,104,1203 +20 10032830 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:40:72:40:0,72,1097 +20 10032831 . T . . END=10032881 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:43:99:39:0,99,1172 +20 10032882 . A T, . . BaseQRankSum=-1.280e-01;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=425641,119;ReadPosRankSum=0.626 GT:AD:DP:GQ:PL:SB ./.:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 ./.:1,41,0:42:93:1306,93,0,1309,123,1340:1,0,21,20 +20 10032883 . A . . END=10032923 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:49:99:44:0,102,1380 +20 10032924 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:48:93:48:0,93,1395 +20 10032925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:48:84:48:0,84,1260 +20 10032926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:48:75:48:0,75,1125 +20 10032927 . T . . END=10032940 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:60:44:0,60,900 +20 10032941 . T . . END=10032943 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:57:44:0,57,855 +20 10032944 . G . . END=10032945 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:54:44:0,54,810 +20 10032946 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:51:44:0,51,765 +20 10032947 . G . . END=10032948 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:48:45:0,48,720 +20 10032949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:45:45:0,45,675 +20 10032950 . T . . END=10032951 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:39:46:0,39,585 +20 10032952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:36:45:0,36,540 +20 10032953 . C . . END=10032954 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:30:45:0,30,450 +20 10032955 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:27:44:0,27,405 +20 10032956 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:21:45:0,21,315 +20 10032957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:18:45:0,18,270 +20 10032958 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:15:45:0,15,225 +20 10032959 . T . . END=10032961 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:12:45:0,12,180 +20 10032962 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:6:46:0,6,90 +20 10032963 . C . . END=10032971 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:0:44:0,0,0 +20 10032972 . C CAT, . . BaseQRankSum=-3.540e-01;DP=109;ExcessHet=3.01;MQRankSum=-1.017e+00;RAW_MQandDP=390941,109;ReadPosRankSum=-1.232e+00 GT:AD:DP:GQ:PL:SB ./.:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 ./.:0,43,0:43:99:1944,132,0,1944,132,1944:0,0,21,22 +20 10032973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:43:0:43:0,0,0 +20 10032974 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:44:96:44:0,96,1179 +20 10032975 . A . . END=10033031 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:99:36:0,99,1093 +20 10033032 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:77:37:0,77,932 +20 10033033 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:80:38:0,80,995 +20 10033034 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:99:39:0,99,1485 +20 10033035 . T . . END=10033036 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:96:36:0,96,1440 +20 10033037 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:85:37:0,85,1018 +20 10033038 . T . . END=10033045 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:90:33:0,90,1350 +20 10033046 . C . . END=10033047 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:81:33:0,81,966 +20 10033048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10033049 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:86:33:0,86,952 +20 10033050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:93:32:0,93,1395 +20 10033051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:71:34:0,71,1032 +20 10033052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10033053 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10033054 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:92:36:0,92,1108 +20 10033055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:99:34:0,102,1073 +20 10033056 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:88:35:0,88,1053 +20 10033057 . A . . END=10033058 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10033059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:91:36:0,91,1047 +20 10033060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:80:36:0,80,1021 +20 10033061 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:70:38:0,70,1080 +20 10033062 . C . . END=10033063 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:92:36:0,92,1078 +20 10033064 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:81:38:0,81,1021 +20 10033065 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:99:38:0,108,1620 +20 10033066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:83:38:0,83,1098 +20 10033067 . T . . END=10033072 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:39:0,106,1162 +20 10033073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:93:40:0,93,1128 +20 10033074 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:40:0,104,1212 +20 10033075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:95:38:0,95,1091 +20 10033076 . C . . END=10033077 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:99:39:0,100,1154 +20 10033078 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:86:42:0,86,1178 +20 10033079 . T . . END=10033084 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:39:0,103,1167 +20 10033085 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:97:40:0,97,1170 +20 10033086 . A . . END=10033096 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:40:0,103,1170 +20 10033097 . A . . END=10033098 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:90:41:0,90,1225 +20 10033099 . A . . END=10033105 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:99:38:0,102,1160 +20 10033106 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:97:38:0,97,1158 +20 10033107 . C . . END=10033341 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:47:99:37:0,99,1147 +20 10033342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:47:93:47:0,93,1352 +20 10033343 . A . . END=10033473 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:54:99:45:0,120,1800 +20 10033474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:46:91:46:0,91,1294 +20 10033475 . G . . END=10033513 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:38:0,100,1071 +20 10033514 . T . . END=10033515 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:84:40:0,84,1175 +20 10033516 . A . . END=10033558 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:99:40:0,105,1172 +20 10033559 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:73:41:0,73,1177 +20 10033560 . T . . END=10033588 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:39:0,111,1187 +20 10033589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:88:39:0,88,1053 +20 10033590 . G . . END=10033621 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:44:99:39:0,107,1160 +20 10033622 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:80:38:0,80,1106 +20 10033623 . T . . END=10033636 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:36:0,108,1126 +20 10033637 . C . . . GT:DP:GQ:MIN_DP:PL ./.:58:97:58:0,97,2210 ./.:40:99:36:0,108,1126 +20 10033638 . C . . END=10033652 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:40:99:36:0,108,1126 +20 10033653 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:43:98:43:0,98,1292 +20 10033654 . A . . END=10033675 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:42:99:39:0,106,1224 +20 10033676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:41:77:41:0,77,1201 +20 10033677 . G . . END=10033854 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:49:99:39:0,99,1370 +20 10033855 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:48:93:48:0,93,1350 +20 10033856 . A . . END=10033905 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:47:99:44:0,101,1273 +20 10033906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:47:75:47:0,75,1252 +20 10033907 . A . . END=10034010 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:43:99:38:0,99,1178 +20 10034011 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:83:39:0,83,1179 +20 10034012 . A . . END=10034013 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:99:38:0,99,1485 +20 10034014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:96:38:0,96,1440 +20 10034015 . C . . END=10034021 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10034022 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:88:35:0,88,1040 +20 10034023 . G . . END=10034039 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:99:33:0,99,1040 +20 10034040 . G . . END=10034055 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:90:33:0,90,1350 +20 10034056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:87:35:0,87,1305 +20 10034057 . T . . END=10034069 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:32:0,90,1350 +20 10034070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:83:33:0,83,979 +20 10034071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034072 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,990 +20 10034073 . T . . END=10034074 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034075 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:84:33:0,84,977 +20 10034076 . A . . END=10034082 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:93:31:0,93,931 +20 10034083 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:82:31:0,82,926 +20 10034084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034085 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:79:32:0,79,941 +20 10034086 . T . . END=10034087 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:93:32:0,93,1395 +20 10034088 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,991 +20 10034089 . T . . END=10034091 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10034092 . A . . END=10034095 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:93:34:0,93,1395 +20 10034096 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:70:34:0,70,952 +20 10034097 . T . . END=10034102 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:90:34:0,90,1350 +20 10034103 . C . . END=10034108 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:87:31:0,87,1305 +20 10034109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:78:30:0,78,894 +20 10034110 . G . . END=10034112 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:84:29:0,84,1260 +20 10034113 . T . . END=10034114 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10034115 . A . . END=10034120 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:31:0,87,1003 +20 10034121 . A . . END=10034122 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034123 . T . . END=10034124 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034125 . A . . END=10034128 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,971 +20 10034129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:65:33:0,65,938 +20 10034130 . A . . END=10034131 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034132 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:87:34:0,87,1075 +20 10034133 . G . . END=10034135 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:99:33:0,99,1055 +20 10034136 . A . . END=10034138 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:96:33:0,96,1440 +20 10034139 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:71:33:0,71,943 +20 10034140 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:34:0,90,975 +20 10034141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10034142 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:83:35:0,83,1046 +20 10034143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034144 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:57:35:0,57,936 +20 10034145 . A . . END=10034152 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:36:0,105,1103 +20 10034153 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:92:36:0,92,1090 +20 10034154 . A . . END=10034158 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:36:0,99,1104 +20 10034159 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:94:35:0,94,1032 +20 10034160 . T . . END=10034171 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,100,1142 +20 10034172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:81:37:0,81,1073 +20 10034173 . A . . END=10034177 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,102,1530 +20 10034178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:86:37:0,86,1083 +20 10034179 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10034180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:94:37:0,94,1100 +20 10034181 . G . . END=10034182 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034184 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10034185 . A . . END=10034190 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10034191 . A . . END=10034195 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:87:33:0,87,1305 +20 10034196 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:66:35:0,66,933 +20 10034197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:90:35:0,90,1350 +20 10034198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,1305 +20 10034199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:75:33:0,75,925 +20 10034200 . A . . END=10034201 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:87:31:0,87,1305 +20 10034202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:76:31:0,76,920 +20 10034203 . G . . END=10034214 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:82:30:0,82,910 +20 10034215 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:76:30:0,76,872 +20 10034216 . T . . END=10034226 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:29:84:28:0,84,879 +20 10034227 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:59:31:0,59,873 +20 10034228 . C . . END=10034229 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:81:31:0,81,990 +20 10034230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034231 . G . . END=10034233 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:85:32:0,85,966 +20 10034234 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:88:33:0,88,1027 +20 10034236 . A . . END=10034238 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034239 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:74:31:0,74,949 +20 10034240 . A . . END=10034244 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:93:32:0,93,1001 +20 10034245 . T . . END=10034251 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:99:33:0,99,1037 +20 10034252 . A . . END=10034256 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:93:36:0,93,1395 +20 10034257 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:74:38:0,74,1044 +20 10034258 . C . . END=10034272 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:35:0,99,1074 +20 10034273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:91:38:0,91,1114 +20 10034274 . T . . END=10034276 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,105,1147 +20 10034277 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:91:38:0,91,1079 +20 10034278 . C . . END=10034279 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:99:39:0,111,1665 +20 10034280 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:89:38:0,89,1134 +20 10034281 . T . . END=10034288 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,99,1133 +20 10034289 . A . . END=10034293 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:92:37:0,92,1112 +20 10034294 . A . . END=10034299 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:35:0,99,1090 +20 10034300 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:82:33:0,82,953 +20 10034301 . C . . END=10034303 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:99:35:0,105,1071 +20 10034304 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:93:37:0,93,1077 +20 10034305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1090 +20 10034306 . T C, . . BaseQRankSum=-2.200e-01;ClippingRankSum=0.00;DP=107;ExcessHet=3.01;MQRankSum=1.15;RAW_MQandDP=380210,107;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB ./.:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 ./.:11,19,0:30:99:486,0,219,519,275,794:5,6,14,5 +20 10034307 . T . . END=10034309 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,103,1113 +20 10034310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:65:37:0,65,1032 +20 10034311 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1099 +20 10034312 . T . . END=10034341 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:36:0,100,1142 +20 10034342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:92:41:0,92,1233 +20 10034343 . T . . END=10034356 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:39:0,105,1201 +20 10034357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:86:39:0,86,1130 +20 10034358 . C . . END=10034399 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:35:0,99,1127 +20 10034400 . A . . END=10034413 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:90:34:0,90,1027 +20 10034414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:78:34:0,78,978 +20 10034415 . T . . END=10034416 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:87:32:0,87,1305 +20 10034417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034418 . T . . END=10034424 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:84:32:0,84,960 +20 10034425 . C T, . . BaseQRankSum=1.76;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=115200,32;ReadPosRankSum=-8.950e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:55:0,120,1800,120,1800,1800 ./.:10,22,0:32:99:.:560,0,175,590,241,830:3,7,12,10 +20 10034426 . G . . END=10034429 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10034430 . C . . END=10034435 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:30:0,90,906 +20 10034436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034437 . C . . END=10034438 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:76:31:0,76,920 +20 10034439 . C . . END=10034447 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:81:31:0,81,1215 +20 10034448 . C . . END=10034449 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10034450 . T . . END=10034453 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034454 . A . . END=10034458 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034459 . G . . END=10034486 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:36:0,99,1485 +20 10034487 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:94:37:0,94,1158 +20 10034488 . C . . END=10034506 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:35:0,105,1045 +20 10034507 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:90:39:0,90,1233 +20 10034508 . A . . END=10034542 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:36:0,100,1162 +20 10034543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:62:39:0,62,1108 +20 10034544 . A . . END=10034615 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:36:0,99,1157 +20 10034616 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034617 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:86:36:0,86,1106 +20 10034618 . A . . END=10034622 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:92:36:0,92,1124 +20 10034623 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10034624 . C . . END=10034627 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10034628 . A . . END=10034635 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1485 +20 10034636 . T . . END=10034645 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:93:34:0,93,1395 +20 10034646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034647 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:88:35:0,88,1067 +20 10034648 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:79:35:0,79,1051 +20 10034649 . C . . END=10034667 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:34:0,99,1140 +20 10034668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:97:37:0,97,1117 +20 10034669 . A . . END=10034692 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,99,1485 +20 10034693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:95:39:0,95,1121 +20 10034694 . G . . END=10034710 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1032 +20 10034711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,994 +20 10034712 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:80:35:0,80,1063 +20 10034713 . T . . END=10034722 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1053 +20 10034723 . G . . END=10034724 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10034725 . A . . END=10034726 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10034727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:89:35:0,89,1045 +20 10034728 . T . . END=10034732 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:34:0,96,1064 +20 10034733 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:84:34:0,84,994 +20 10034734 . G . . END=10034737 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034738 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:87:29:0,87,810 +20 10034739 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:34:0,96,1440 +20 10034740 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:78:33:0,78,955 +20 10034741 . A . . END=10034742 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034743 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:88:36:0,88,1111 +20 10034744 . G . . END=10034760 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:33:0,99,1056 +20 10034761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:97:38:0,97,1110 +20 10034762 . C . . END=10034784 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:35:0,102,1117 +20 10034785 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:83:37:0,83,1091 +20 10034786 . A . . END=10034789 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1440 +20 10034790 . T . . END=10034791 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:38:0,99,1485 +20 10034792 . T . . END=10034802 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:90:33:0,90,1062 +20 10034803 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:80:34:0,80,1010 +20 10034804 . A . . END=10034807 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,1350 +20 10034808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:78:36:0,78,1084 +20 10034809 . G . . END=10034813 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:33:0,99,1033 +20 10034814 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,1009 +20 10034815 . G . . END=10034816 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034817 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,1010 +20 10034818 . T . . END=10034825 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:90:30:0,90,986 +20 10034826 . C . . END=10034837 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:80:30:0,80,1008 +20 10034838 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034839 . A . . END=10034848 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:84:31:0,84,1260 +20 10034849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034851 . G . . END=10034853 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034854 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:77:32:0,77,920 +20 10034855 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:93:32:0,93,1395 +20 10034856 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:79:32:0,79,901 +20 10034857 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,966 +20 10034858 . A . . END=10034868 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10034869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:82:34:0,82,1029 +20 10034870 . T . . END=10034873 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:93:31:0,93,950 +20 10034874 . T . . END=10034878 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:99:33:0,99,995 +20 10034879 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034880 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:75:33:0,75,1002 +20 10034881 . A . . END=10034889 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:32:0,90,1350 +20 10034890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:88:35:0,88,955 +20 10034891 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034892 . G . . END=10034901 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:93:34:0,93,1395 +20 10034902 . C . . END=10035153 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:46:99:37:0,99,1159 +20 10035154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:92:41:0,92,1186 +20 10035155 . A . . END=10035167 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:99:39:0,114,1187 +20 10035168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:98:41:0,98,1233 +20 10035169 . G . . END=10035179 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:99:38:0,105,1184 +20 10035180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:90:39:0,90,1179 +20 10035181 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:85:39:0,85,1156 +20 10035182 . C . . END=10035334 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:37:0,99,1113 +20 10035335 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:92:40:0,92,1255 +20 10035336 . T . . END=10035343 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:99:41:0,111,1326 +20 10035344 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:79:41:0,79,1113 +20 10035345 . T . . END=10035384 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:43:99:37:0,99,1131 +20 10035385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:86:38:0,86,1096 +20 10035386 . G . . END=10035388 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:93:36:0,93,1395 +20 10035389 . T . . END=10035396 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10035397 . T . . END=10035410 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10035411 . G . . END=10035413 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035414 . C . . END=10035417 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:33:0,96,1440 +20 10035418 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035419 . G . . END=10035423 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:34:0,96,1440 +20 10035424 . C . . END=10035427 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:85:34:0,85,921 +20 10035429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:99:33:0,99,930 +20 10035430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:96:32:0,96,987 +20 10035431 . C . . END=10035441 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1067 +20 10035442 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:97:38:0,97,1113 +20 10035443 . T . . END=10035446 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,102,1153 +20 10035447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1127 +20 10035448 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:37:0,99,1485 +20 10035449 . T . . END=10035452 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:96:37:0,96,1440 +20 10035453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:39:0,99,1485 +20 10035454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:92:38:0,92,1174 +20 10035455 . T . . END=10035615 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:44:99:37:0,102,1178 +20 10035616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:44:98:44:0,98,1200 +20 10035617 . T . . END=10035703 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:50:99:44:0,107,1304 +20 10035704 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:51:90:51:0,90,1305 +20 10035705 . T . . END=10036106 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:50:99:40:0,100,1200 +20 10036107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:1:67:0,1,1807 ./.:50:99:40:0,100,1200 +20 10036108 . C . . END=10036140 GT:DP:GQ:MIN_DP:PL ./.:53:99:41:0,102,1504 ./.:50:99:40:0,100,1200 +20 10036141 . C . . . GT:DP:GQ:MIN_DP:PL ./.:46:32:46:0,32,1246 ./.:50:99:40:0,100,1200 +20 10036142 . T . . END=10036146 GT:DP:GQ:MIN_DP:PL ./.:51:99:48:0,103,1665 ./.:50:99:40:0,100,1200 +20 10036147 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1481 ./.:50:99:40:0,100,1200 +20 10036148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:89:43:0,89,1557 ./.:50:99:40:0,100,1200 +20 10036149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:44:92:44:0,92,1471 ./.:50:99:40:0,100,1200 +20 10036150 . A . . END=10036156 GT:DP:GQ:MIN_DP:PL ./.:41:99:41:0,105,1433 ./.:50:99:40:0,100,1200 +20 10036157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:81:42:0,81,1385 ./.:50:99:40:0,100,1200 +20 10036158 . T . . END=10036160 GT:DP:GQ:MIN_DP:PL ./.:42:99:40:0,117,1755 ./.:50:99:40:0,100,1200 +20 10036161 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:82:42:0,82,1514 ./.:50:99:40:0,100,1200 +20 10036162 . G . . END=10036428 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:50:99:40:0,100,1200 +20 10036429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:42:96:42:0,96,1280 +20 10036430 . C . . END=10036633 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:52:99:38:0,104,1156 +20 10036634 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:55:93:55:0,93,1592 +20 10036635 . T . . END=10036663 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:56:99:52:0,119,1634 +20 10036664 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:54:98:54:0,98,1553 +20 10036665 . T . . END=10036875 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:53:99:39:0,99,1224 +20 10036876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:92:39:0,92,1184 +20 10036877 . A . . END=10036879 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:37:99:37:0,102,1530 +20 10036880 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:37:78:37:0,78,1099 +20 10036881 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:96:36:0,96,1440 +20 10036882 . A . . END=10036889 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:99:37:0,99,1485 +20 10036890 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:93:39:0,93,1162 +20 10036891 . A . . END=10036896 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:99:35:0,99,1485 +20 10036897 . C . . END=10036899 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:90:36:0,90,1350 +20 10036900 . G . . END=10036910 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:34:81:29:0,81,1215 +20 10036911 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:28:67:28:0,67,862 +20 10036912 . C . . END=10036913 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:81:28:0,81,1215 +20 10036914 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:59:29:0,59,842 +20 10036915 . T . . END=10036925 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:75:28:0,75,1125 +20 10036926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:81:29:0,81,1215 +20 10036927 . G . . END=10036929 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:78:27:0,78,1170 +20 10036930 . CGATAGCCCTAGCCCTAGATA C, . . BaseQRankSum=0.200;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=404447,129;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036931 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036932 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036933 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036934 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036935 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036936 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036937 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036938 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036939 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036940 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036941 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036942 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036943 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036944 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036945 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036946 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036947 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036948 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036949 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036950 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036951 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:70:0,120,1800 ./.:33:0:33:0,0,569 +20 10036952 . A . . END=10036956 GT:DP:GQ:MIN_DP:PL ./.:74:99:70:0,120,1800 ./.:33:90:33:0,90,1059 +20 10036957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:37:70:0,37,2472 ./.:35:37:35:0,37,931 +20 10036958 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:40:70:0,40,2490 ./.:35:39:35:0,39,926 +20 10036959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:70:0,120,1800 ./.:36:96:36:0,96,1126 +20 10036960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:41:70:0,41,2579 ./.:36:41:36:0,41,1033 +20 10036961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:40:70:0,40,2472 ./.:33:34:33:0,34,944 +20 10036962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:48:69:0,48,2428 ./.:35:40:35:0,40,990 +20 10036963 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:32:72:0,32,2462 ./.:36:44:36:0,44,951 +20 10036964 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:39:71:0,39,2535 ./.:36:43:36:0,43,1033 +20 10036965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:73:0,120,1800 ./.:36:93:36:0,93,1395 +20 10036966 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:60:74:0,60,2768 ./.:36:42:36:0,42,1044 +20 10036967 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:74:0,120,1800 ./.:34:93:34:0,93,1395 +20 10036968 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:64:74:0,64,2707 ./.:35:36:35:0,36,944 +20 10036969 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:36:35:0,36,944 +20 10036970 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:38:35:0,38,991 +20 10036971 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:35:34:0,35,958 +20 10036972 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:90:34:0,90,1350 +20 10036973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:37:34:0,37,982 +20 10036974 . A . . END=10036990 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:31:90:30:0,90,901 +20 10036991 . A . . END=10036997 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:36:99:34:0,99,1163 +20 10036998 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:36:84:36:0,84,1068 +20 10036999 . T . . END=10037011 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:37:0,105,1575 +20 10037012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:84:39:0,84,1111 +20 10037013 . A . . END=10037021 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:38:0,102,1222 +20 10037022 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:61:39:0,61,1130 +20 10037023 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:96:39:0,96,1440 +20 10037024 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:40:99:40:0,99,1485 +20 10037025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:40:91:40:0,91,1220 +20 10037026 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:39:0,99,1485 +20 10037027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:92:39:0,92,1204 +20 10037028 . A . . END=10037029 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:99:37:0,99,1485 +20 10037030 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:97:38:0,97,1133 +20 10037031 . A . . END=10037035 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:99:35:0,99,1485 +20 10037036 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:98:38:0,98,1104 +20 10037037 . C T, . . BaseQRankSum=3.50;DP=116;ExcessHet=3.01;MQRankSum=-1.193e+00;RAW_MQandDP=293262,81;ReadPosRankSum=-1.609e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,42,0:81:99:.:1465,0,1124,1580,1251,2831:28,11,28,14 ./.:.:37:99:35:0,102,1530,102,1530,1530 +20 10037038 . G . . END=10037051 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:37:99:35:0,102,1530 +20 10037052 . T . . END=10037054 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:87:35:0,87,1000 +20 10037055 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:99:35:0,99,1485 +20 10037056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:36:78:36:0,78,1030 +20 10037057 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:34:85:34:0,85,966 +20 10037058 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:99:35:0,102,1530 +20 10037059 . T . . END=10037060 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:36:96:36:0,96,1440 +20 10037061 . A . . END=10037072 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:99:34:0,99,1080 +20 10037073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:37:96:37:0,96,1440 +20 10037074 . T . . END=10037076 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:41:99:39:0,99,1485 +20 10037077 . C . . END=10037088 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:90:37:0,90,1072 +20 10037089 . G . . END=10037090 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:84:35:0,84,1260 +20 10037091 . A . . END=10037094 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:37:75:36:0,75,1125 +20 10037095 . A . . END=10037100 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:60:35:0,60,900 +20 10037101 . A . . END=10037102 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:39:51:39:0,51,765 +20 10037103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:40:48:40:0,48,720 +20 10037104 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:39:38:0,39,931 +20 10037105 . A . . END=10037106 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:39:42:38:0,42,630 +20 10037107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:45:38:0,45,675 +20 10037108 . G . . END=10037109 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:39:33:38:0,33,495 +20 10037110 . T TGATA, . . DP=111;ExcessHet=3.01;RAW_MQandDP=371419,111 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 ./.:0,36,0:36:99:1691,114,0,1691,114,1691:0,0,19,17 +20 10037111 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:43:0:43:0,0,0 +20 10037112 . A . . END=10037113 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:43:54:43:0,54,810 +20 10037114 . A . . END=10037116 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:45:57:44:0,57,855 +20 10037117 . T . . END=10037124 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:45:60:42:0,60,900 +20 10037125 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:44:54:44:0,54,810 +20 10037126 . G . . END=10037135 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:48:33:45:0,33,495 +20 10037136 . T . . END=10037137 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:47:27:47:0,27,405 +20 10037138 . G . . END=10037141 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:46:21:42:0,21,315 +20 10037142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:42:18:42:0,18,270 +20 10037143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:41:15:41:0,15,225 +20 10037144 . TGATA T,TGATAGATA,TGATAGATAGATA, . . DP=110;ExcessHet=3.01;RAW_MQandDP=329352,110 GT:AD:DP:GQ:PL:SB ./.:0,0,0,36,0:36:99:1861,1864,1866,1864,1866,1866,127,129,129,0,1864,1866,1866,129,1866:0,0,15,21 ./.:0,18,11,0,0:29:99:1218,461,407,756,0,724,1218,462,757,1218,1218,462,757,1218,1218:0,0,13,16 +20 10037145 . G *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037146 . A *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037147 . T *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037148 . A *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:39:0:39:0,0,113 +20 10037150 . A . . END=10037154 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:81:37:0,81,1060 +20 10037155 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:78:37:0,78,1049 +20 10037156 . A . . END=10037159 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:87:37:0,87,1305 +20 10037160 . A . . END=10037165 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:90:36:0,90,1350 +20 10037166 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:89:38:0,89,1083 +20 10037167 . T . . END=10037177 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:93:36:0,93,1395 +20 10037178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:79:37:0,79,1070 +20 10037179 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:95:37:0,95,1065 +20 10037180 . A . . END=10037181 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:99:37:0,99,1485 +20 10037182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:96:37:0,96,1440 +20 10037183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:35:72:35:0,72,1024 +20 10037184 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:36:99:36:0,99,1485 +20 10037185 . G . . END=10037186 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:74:36:0,74,1017 +20 10037187 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:0:68:0,0,2259 ./.:37:99:37:0,105,1575 +20 10037188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:66:0,120,1800 ./.:37:99:37:0,105,1575 +20 10037189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:50:67:0,50,2476 ./.:37:98:37:0,98,1114 +20 10037190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:62:67:0,62,2523 ./.:38:99:37:0,102,1530 +20 10037191 . T . . END=10037192 GT:DP:GQ:MIN_DP:PL ./.:67:99:66:0,120,1800 ./.:38:99:37:0,102,1530 +20 10037193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:95:68:0,95,2607 ./.:38:99:37:0,102,1530 +20 10037194 . T . . END=10037195 GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,101,1800 ./.:38:99:37:0,102,1530 +20 10037196 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,101,1800 ./.:37:93:37:0,93,1098 +20 10037197 . A . . END=10037198 GT:DP:GQ:MIN_DP:PL ./.:69:86:68:0,86,2535 ./.:40:99:38:0,99,1208 +20 10037199 . A . . END=10037222 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:40:99:38:0,99,1208 +20 10037223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:95:37:0,95,1043 +20 10037224 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:68:38:0,68,994 +20 10037225 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:82:37:0,82,1049 +20 10037226 . C . . END=10037245 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:37:0,106,1081 +20 10037246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:98:41:0,98,1200 +20 10037247 . T . . END=10037251 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:40:0,111,1665 +20 10037252 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:79:38:0,79,1062 +20 10037253 . G . . END=10037294 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:39:0,109,1136 +20 10037295 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:96:41:0,96,1152 +20 10037296 . C . . END=10037421 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:44:99:36:0,103,1035 +20 10037422 . T . . END=10037423 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:96:38:0,96,1045 +20 10037424 . A . . END=10037429 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:34:0,99,1485 +20 10037430 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:96:37:0,96,1044 +20 10037431 . C . . END=10037446 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:35:0,99,1157 +20 10037447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:89:36:0,89,892 +20 10037448 . A . . END=10037452 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:93:33:0,93,999 +20 10037453 . T . . END=10037455 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:38:0,99,1485 +20 10037456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:98:38:0,98,1083 +20 10037457 . A . . END=10037461 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:35:0,99,1082 +20 10037462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:85:35:0,85,1019 +20 10037463 . T . . END=10037485 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:33:0,99,997 +20 10037486 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:84:38:0,84,1050 +20 10037487 . C . . END=10037510 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:39:99:36:0,99,1167 +20 10037511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:42:87:42:0,87,1245 +20 10037512 . G . . END=10037527 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:38:0,105,1162 +20 10037528 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:78:41:0,78,1210 +20 10037529 . G . . END=10037588 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:38:0,104,1170 +20 10037589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:97:37:0,97,1108 +20 10037590 . A . . END=10037603 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:40:99:38:0,105,1575 +20 10037604 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:94:37:0,94,1063 +20 10037605 . A . . END=10037636 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:36:0,102,1164 +20 10037637 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:93:37:0,93,1081 +20 10037638 . C . . END=10037639 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:99:37:0,102,1530 +20 10037640 . G . . END=10037647 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:90:34:0,90,1350 +20 10037648 . A . . END=10037649 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:84:34:0,84,1260 +20 10037650 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:34:78:34:0,78,1170 +20 10037651 . C . . END=10037652 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:81:33:0,81,1215 +20 10037653 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:78:33:0,78,1170 +20 10037654 . G . . END=10037660 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:81:30:0,81,1215 +20 10037661 . C . . END=10037663 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:90:32:0,90,1350 +20 10037664 . T . . END=10037666 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:81:28:0,81,1215 +20 10037667 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:77:31:0,77,902 +20 10037668 . C . . END=10037676 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:81:30:0,81,1215 +20 10037677 . A . . END=10037678 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:64:28:0,64,806 +20 10037679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:30:73:30:0,73,902 +20 10037680 . T . . END=10037688 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:81:29:0,81,887 +20 10037689 . T . . END=10037690 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:90:30:0,90,924 +20 10037691 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:87:29:0,87,907 +20 10037692 . C . . END=10037695 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:93:31:0,93,846 +20 10037696 . C . . END=10037699 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:99:33:0,99,982 +20 10037700 . A . . END=10037703 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:96:32:0,96,993 +20 10037704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:89:35:0,89,1033 +20 10037705 . C . . END=10037708 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:99:36:0,99,1162 +20 10037709 . A T, . . BaseQRankSum=0.120;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.934;RAW_MQandDP=378841,106;ReadPosRankSum=1.15 GT:AD:DP:GQ:PL:SB ./.:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 ./.:17,18,0:35:99:460,0,435,511,489,1000:6,11,4,14 +20 10037710 . A . . END=10037717 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:37:0,100,1131 +20 10037718 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:96:38:0,96,1024 +20 10037719 . G . . END=10037739 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:36:0,99,1191 +20 10037740 . C A, . . BaseQRankSum=-2.504e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.545 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:34,2,0:36:88:.:0,88,1080,102,1085,1099:15,19,2,0 +20 10037741 . A . . END=10037948 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:46:99:34:0,99,1115 +20 10037949 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:50:95:50:0,95,1374 +20 10037950 . G . . END=10037992 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:48:99:38:0,100,1203 +20 10037993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:88:39:0,88,1159 +20 10037994 . C . . END=10038068 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:37:0,99,1156 +20 10038069 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:90:38:0,90,1157 +20 10038070 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:38:0,102,1530 +20 10038071 . C . . END=10038083 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:90:33:0,90,1010 +20 10038084 . A . . END=10038145 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:99:33:0,99,1003 +20 10038146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:96:37:0,96,1115 +20 10038147 . C . . END=10038165 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:37:0,106,1137 +20 10038166 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:43:88:43:0,88,1209 +20 10038167 . T . . END=10038187 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:37:0,102,1332 +20 10038188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:88:40:0,88,1228 +20 10038189 . T . . END=10038210 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:99:38:0,102,1181 +20 10038211 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:82:39:0,82,1142 +20 10038212 . T . . END=10038216 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:37:0,108,1144 +20 10038217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:91:37:0,91,1001 +20 10038218 . A . . END=10038237 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:99:33:0,99,963 +20 10038238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:96:36:0,96,1117 +20 10038239 . A . . END=10038241 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038242 . C . . END=10038244 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:93:34:0,93,1395 +20 10038245 . G . . END=10038249 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:35:0,99,1485 +20 10038250 . A . . END=10038253 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:94:34:0,94,1079 +20 10038254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10038255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:90:35:0,90,1085 +20 10038256 . G . . END=10038264 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:34:0,99,1058 +20 10038265 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:93:36:0,93,1073 +20 10038266 . A . . END=10038273 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:35:0,99,1160 +20 10038274 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:93:36:0,93,1111 +20 10038275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:38:0,105,1575 +20 10038276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:85:38:0,85,1147 +20 10038277 . T . . END=10038287 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:75:36:0,75,1047 +20 10038289 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:88:35:0,88,1016 +20 10038290 . T . . END=10038292 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:91:34:0,91,1059 +20 10038293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:79:32:0,79,934 +20 10038294 . T . . END=10038298 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:90:33:0,90,1350 +20 10038299 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:83:33:0,83,992 +20 10038300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:32:0,90,1350 +20 10038301 . C . . END=10038304 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:81:30:0,81,1215 +20 10038305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:79:30:0,79,909 +20 10038306 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:81:30:0,81,1215 +20 10038307 . G . . END=10038308 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:75:30:0,75,1125 +20 10038309 . T . . END=10038314 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:31:0,84,1260 +20 10038315 . T . . END=10038316 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:93:33:0,93,1395 +20 10038317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:89:34:0,89,1071 +20 10038318 . T . . END=10038326 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:31:0,90,1350 +20 10038327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:75:33:0,75,982 +20 10038328 . A . . END=10038341 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:30:0,84,946 +20 10038342 . C . . END=10038344 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:29:74:29:0,74,761 +20 10038345 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:84:30:0,84,1260 +20 10038346 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:76:31:0,76,850 +20 10038347 . T . . END=10038348 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:84:30:0,84,1260 +20 10038349 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:67:31:0,67,902 +20 10038350 . T . . END=10038355 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:31:0,84,1260 +20 10038356 . A . . END=10038360 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:31:0,90,1350 +20 10038361 . A . . END=10038367 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:33:0,99,1035 +20 10038368 . C . . END=10038369 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:81:33:0,81,942 +20 10038370 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10038371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:85:34:0,85,1028 +20 10038372 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10038373 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:98:33:0,98,913 +20 10038374 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:61:33:0,61,918 +20 10038375 . C . . END=10038379 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:34:0,99,1038 +20 10038380 . T . . END=10038381 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:90:34:0,90,1350 +20 10038382 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:86:34:0,86,1048 +20 10038383 . G . . END=10038384 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:90:33:0,90,1350 +20 10038385 . A . . END=10038388 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038389 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:97:36:0,97,1094 +20 10038390 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:89:35:0,89,1051 +20 10038391 . A . . END=10038400 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:99:35:0,104,1056 +20 10038401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:41:94:41:0,94,1126 +20 10038402 . A . . END=10038407 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:41:0,114,1710 +20 10038408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:41:96:41:0,96,1280 +20 10038409 . T . . END=10038429 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:37:0,100,1116 +20 10038430 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:86:38:0,86,1122 +20 10038431 . T . . END=10038437 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:38:0,111,1181 +20 10038438 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:93:40:0,93,1195 +20 10038439 . T . . END=10038524 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:53:99:41:0,99,1277 +20 10038525 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:57:96:57:0,96,1440 +20 10038526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:60:99:60:0,99,1485 +20 10038527 . T . . END=10038533 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:60:90:60:0,90,1350 +20 10038534 . CTTGT C, . . BaseQRankSum=-1.936e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.962;RAW_MQandDP=213700,59;ReadPosRankSum=0.880 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038535 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038536 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038537 . G *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038538 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038539 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:57:0:57:0,0,101 +20 10038540 . T . . END=10038582 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:50:99:44:0,114,1304 +20 10038583 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:91:55:0,91,1806 ./.:50:99:44:0,114,1304 +20 10038584 . A . . END=10038639 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:50:99:44:0,114,1304 +20 10038640 . A C, . . BaseQRankSum=-1.630e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=162000,45;ReadPosRankSum=0.213 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:54:0,120,1800,120,1800,1800 ./.:23,22,0:45:99:.:579,0,582,648,648,1296:9,14,18,4 +20 10038641 . A . . END=10038835 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:55:99:38:0,99,1194 +20 10038836 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:82:41:0,82,1234 +20 10038837 . C . . END=10038849 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:39:0,111,1297 +20 10038850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:42:94:42:0,94,1268 +20 10038851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:42:99:42:0,117,1755 +20 10038852 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:88:41:0,88,1268 +20 10038853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,109,1277 +20 10038854 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:90:41:0,90,1272 +20 10038855 . T . . END=10038857 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:99:40:0,106,1260 +20 10038858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:86:40:0,86,1212 +20 10038859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,111,1665 +20 10038860 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:89:41:0,89,1251 +20 10038861 . G . . END=10038863 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:38:0,102,1530 +20 10038864 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:88:41:0,88,1102 +20 10038865 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,99,1195 +20 10038866 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:83:38:0,83,1140 +20 10038867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:39:0,102,1530 +20 10038868 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:84:39:0,84,1113 +20 10038869 . C . . END=10038876 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:37:99:36:0,105,1117 +20 10038877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:86:36:0,86,1073 +20 10038878 . T . . END=10038881 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:99:35:0,102,1105 +20 10038882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:81:36:0,81,1005 +20 10038883 . T . . END=10038890 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:37:99:36:0,102,1530 +20 10038891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:91:38:0,91,1114 +20 10038892 . A . . END=10038901 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:99:37:0,99,1144 +20 10038902 . T . . END=10038922 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:90:31:0,90,961 +20 10038923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:76:31:0,76,940 +20 10038924 . A . . END=10038925 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:90:31:0,90,999 +20 10038926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:87:31:0,87,1305 +20 10038927 . A . . END=10038930 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:33:90:32:0,90,1350 +20 10038931 . C . . END=10038936 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:35:99:34:0,99,1083 +20 10038937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:88:34:0,88,1000 +20 10038938 . T . . END=10038982 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:34:0,99,1019 +20 10038983 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:71:34:0,71,973 +20 10038984 . T . . END=10038993 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:99:37:0,99,1485 +20 10038994 . C T, . . BaseQRankSum=2.96;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-2.350e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:54:0,120,1800,120,1800,1800 ./.:19,19,0:38:99:.:524,0,452,581,509,1090:14,5,9,10 +20 10038995 . A . . END=10039370 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:52:99:38:0,100,1150 +20 10039371 . T G, . . BaseQRankSum=-1.667e+00;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=428400,119;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL:SB ./.:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 ./.:28,17,0:45:99:411,0,777,495,828,1324:10,18,9,8 +20 10039372 . T . . END=10039503 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:48:99:43:0,107,1307 +20 10039504 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:43:96:43:0,96,1239 +20 10039505 . A . . END=10039707 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:49:99:39:0,102,1236 +20 10039708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:92:41:0,92,1304 +20 10039709 . A . . END=10039832 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:49:99:41:0,104,1340 +20 10039833 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:53:97:53:0,97,1404 +20 10039834 . T . . END=10040087 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:50:99:40:0,100,1242 +20 10040088 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:94:46:0,94,1393 +20 10040089 . T . . END=10040420 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:53:99:43:0,100,1261 +20 10040421 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:74:44:0,74,1237 +20 10040422 . A . . END=10040436 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:43:99:40:0,99,1485 +20 10040437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:90:41:0,90,1200 +20 10040438 . A . . END=10040439 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:99:40:0,102,1530 +20 10040440 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:96:39:0,96,1162 +20 10040441 . T . . END=10040442 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:40:99:39:0,102,1530 +20 10040443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:36:96:36:0,96,1121 +20 10040444 . A . . END=10040484 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:99:34:0,100,1044 +20 10040485 . T . . END=10040486 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:95:41:0,95,1232 +20 10040487 . C . . END=10040512 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:99:39:0,108,1245 +20 10040513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:82:42:0,82,1240 +20 10040514 . T . . END=10040537 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:40:99:38:0,105,1109 +20 10040538 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:38:92:38:0,92,1161 +20 10040539 . T . . END=10040564 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:99:36:0,100,1047 +20 10040565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:86:41:0,86,1192 +20 10040566 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:99:42:0,120,1800 +20 10040567 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:96:42:0,96,1208 +20 10040568 . C . . END=10040578 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:99:39:0,99,1029 +20 10040579 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:95:46:0,95,1300 +20 10040580 . A . . END=10040634 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:99:42:0,111,1303 +20 10040635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:45:87:45:0,87,1333 +20 10040636 . T . . END=10040647 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:99:43:0,119,1332 +20 10040648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:83:44:0,83,1294 +20 10040649 . A . . END=10040666 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:99:43:0,104,1286 +20 10040667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:48:86:48:0,86,1339 +20 10040668 . C . . END=10040726 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:99:43:0,99,1271 +20 10040727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:82:42:0,82,1185 +20 10040728 . T . . END=10040735 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:99:40:0,99,1485 +20 10040736 . T . . END=10040739 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:90:36:0,90,1350 +20 10040740 . T . . END=10040742 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:84:40:0,84,1260 +20 10040743 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:43:78:43:0,78,1170 +20 10040744 . C . . END=10040762 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:60:36:0,60,900 +20 10040763 . T . . END=10040767 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:57:38:0,57,855 +20 10040768 . T . . END=10040770 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:40:54:39:0,54,810 +20 10040771 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:60:81:0,60,2763 ./.:40:54:39:0,54,810 +20 10040772 . C CT,CTT, . . BaseQRankSum=0.374;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=358648,120;ReadPosRankSum=-4.270e-01 GT:AD:DP:GQ:PL:SB ./.:0,70,0,0:70:99:2033,210,0,2034,210,2034,2034,210,2034,2034:0,0,37,33 ./.:17,0,20,0:37:99:640,692,1318,0,626,563,692,1318,626,1318:7,10,10,10 +20 10040773 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:42:0:42:0,0,240 +20 10040774 . T . . END=10040778 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:44:87:44:0,87,1305 +20 10040779 . T . . END=10040780 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:44:90:44:0,90,1350 +20 10040781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:42:10:42:0,10,1085 +20 10040782 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:39:28:39:0,28,1031 +20 10040783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:42:77:42:0,77,1191 +20 10040784 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:40:68:40:0,68,1127 +20 10040785 . T . . END=10040792 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:41:81:39:0,81,1215 +20 10040793 . T . . END=10040798 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:41:72:38:0,72,1080 +20 10040799 . T . . END=10040805 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:40:66:38:0,66,990 +20 10040806 . T . . END=10040810 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:39:57:38:0,57,855 +20 10040811 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:41:60:41:0,60,900 +20 10040812 . AT A, . . BaseQRankSum=0.905;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=358099,122;ReadPosRankSum=0.031 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 ./.:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040813 . T *, . . DP=122 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 ./.:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:42:0:42:0,0,275 +20 10040815 . T . . END=10040820 GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:41:99:40:0,111,1665 +20 10040821 . T C,A, . . BaseQRankSum=-2.100e-02;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=347299,119;ReadPosRankSum=-3.470e-01 GT:AD:DP:GQ:PL:SB ./.:38,0,40,0:78:99:1200,1314,2533,0,1219,1099,1314,2533,1219,2533:20,18,21,19 ./.:39,1,0,0:40:90:0,90,1292,117,1295,1322,117,1295,1322,1322:17,22,0,1 +20 10040822 . A . . END=10040945 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:40:0,108,1209 +20 10040946 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:96:40:0,96,1140 +20 10040947 . T . . END=10040964 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:99:41:0,111,1193 +20 10040965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:86:42:0,86,1184 +20 10040966 . G . . END=10040999 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:99:38:0,105,1162 +20 10041000 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:73:37:0,73,978 +20 10041001 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:99:39:0,116,1109 +20 10041002 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:94:37:0,94,1076 +20 10041003 . G . . END=10041133 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:99:34:0,99,1068 +20 10041134 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:36:96:36:0,96,1086 +20 10041135 . C . . END=10041137 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:99:37:0,105,1575 +20 10041138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:36:96:36:0,96,1098 +20 10041139 . G . . END=10041201 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:35:0,101,1028 +20 10041202 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:98:41:0,98,1268 +20 10041203 . A . . END=10041213 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:99:36:0,103,1102 +20 10041214 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:38:98:38:0,98,1136 +20 10041215 . G . . END=10041244 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:99:37:0,100,1099 +20 10041245 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:43:98:43:0,98,1224 +20 10041246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:43:99:43:0,118,1316 +20 10041247 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:44:83:44:0,83,1191 +20 10041248 . A . . END=10041278 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:44:99:41:0,101,1215 +20 10041279 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:46:91:46:0,91,1306 +20 10041280 . G . . END=10041283 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:42:0,106,1272 +20 10041284 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:94:42:0,94,1249 +20 10041285 . T . . END=10041289 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:42:0,108,1620 +20 10041290 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:89:39:0,89,1138 +20 10041291 . T . . END=10041292 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:40:0,102,1530 +20 10041293 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:81:40:0,81,1107 +20 10041294 . A . . END=10041303 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:38:0,102,1530 +20 10041304 . C T, . . BaseQRankSum=3.22;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=362210,102;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL:SB ./.:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 ./.:18,15,0:33:99:391,0,405,445,450,895:8,10,7,8 +20 10041305 . G . . END=10041308 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:41:99:40:0,109,1141 +20 10041309 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:94:39:0,94,1146 +20 10041310 . A . . END=10041311 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:41:99:40:0,111,1665 +20 10041312 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:85:37:0,85,1109 +20 10041313 . G . . END=10041317 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:37:0,101,1165 +20 10041318 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:96:38:0,96,1136 +20 10041319 . G . . END=10041321 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:36:0,99,1485 +20 10041322 . T . . END=10041324 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:92:37:0,92,1121 +20 10041325 . G . . END=10041328 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:38:0,99,1196 +20 10041329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:89:39:0,89,1177 +20 10041330 . T . . END=10041350 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:35:0,99,1117 +20 10041351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:97:36:0,97,1109 +20 10041352 . G . . END=10041353 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,102,1048 +20 10041354 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:97:36:0,97,1085 +20 10041355 . T . . END=10041373 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:34:0,99,1056 +20 10041374 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:35:89:35:0,89,1029 +20 10041375 . T . . END=10041385 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,102,1037 +20 10041386 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:90:36:0,90,1064 +20 10041387 . C . . END=10041393 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:36:0,102,1166 +20 10041394 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:93:36:0,93,1077 +20 10041395 . C . . END=10041405 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:37:0,99,1167 +20 10041406 . G . . END=10041407 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:90:36:0,90,1350 +20 10041408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:68:36:0,68,1006 +20 10041409 . A . . END=10041413 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:87:34:0,87,1305 +20 10041414 . G . . END=10041417 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:90:30:0,90,935 +20 10041418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:73:33:0,73,935 +20 10041419 . A . . END=10041427 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:32:90:30:0,90,933 +20 10041428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:70:33:0,70,927 +20 10041429 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:84:33:0,84,945 +20 10041430 . T . . END=10041431 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:99:34:0,99,1485 +20 10041432 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:97:36:0,97,1104 +20 10041433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:36:0,105,1575 +20 10041434 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:79:36:0,79,1099 +20 10041435 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:37:0,105,1575 +20 10041436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:96:37:0,96,1090 +20 10041437 . A . . END=10041443 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:36:0,99,1141 +20 10041444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:96:39:0,96,1440 +20 10041445 . A . . END=10041449 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:39:0,99,1485 +20 10041450 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:61:38:0,61,1101 +20 10041451 . G . . END=10041458 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:35:99:33:0,99,1084 +20 10041459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:35:94:35:0,94,1111 +20 10041460 . A . . END=10041465 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:35:0,102,1011 +20 10041466 . C . . END=10041467 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:92:36:0,92,1098 +20 10041468 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:37:0,99,1485 +20 10041469 . A . . END=10041473 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:90:37:0,90,1350 +20 10041474 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:78:37:0,78,1071 +20 10041475 . C . . END=10041488 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:90:32:0,90,1350 +20 10041489 . T . . END=10041490 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:99:33:0,99,1105 +20 10041491 . G . . END=10041497 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:90:33:0,90,1350 +20 10041498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:88:33:0,88,1024 +20 10041499 . A . . END=10041504 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:32:90:31:0,90,1350 +20 10041505 . T . . END=10041515 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,99,1485 +20 10041516 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:92:36:0,92,1049 +20 10041517 . A . . END=10041547 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:35:0,101,1051 +20 10041548 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:94:37:0,94,1136 +20 10041549 . T . . END=10041574 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:35:0,102,1124 +20 10041575 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:96:36:0,96,1440 +20 10041576 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:38:0,102,1063 +20 10041577 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:98:37:0,98,1073 +20 10041578 . T . . END=10041581 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:37:0,99,1485 +20 10041582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:40:97:40:0,97,1173 +20 10041583 . C . . END=10041600 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:40:99:38:0,108,1620 +20 10041601 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:40:95:40:0,95,1196 +20 10041602 . A . . END=10041613 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:37:0,108,1620 +20 10041614 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:98:39:0,98,1125 +20 10041615 . G . . END=10041648 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:36:0,99,1079 +20 10041649 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:96:36:0,96,1098 +20 10041650 . A . . END=10041662 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,99,1485 +20 10041663 . G . . END=10041675 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:90:34:0,90,1350 +20 10041676 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:87:34:0,87,1305 +20 10041677 . A . . END=10041685 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:72:32:0,72,1080 +20 10041686 . A . . END=10041692 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:31:60:30:0,60,900 +20 10041693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:30:54:30:0,54,810 +20 10041694 . T . . END=10041695 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:30:48:29:0,48,720 +20 10041696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:29:41:29:0,41,825 +20 10041697 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:29:42:29:0,42,630 +20 10041698 . C CAT, . . BaseQRankSum=1.89;DP=100;ExcessHet=3.01;MQRankSum=0.844;RAW_MQandDP=361697,100;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB ./.:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 ./.:23,0,0:23:69:0,69,825,69,825,825:12,11,0,0 +20 10041699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:78:0,120,1800 ./.:29:39:29:0,39,585 +20 10041700 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:78:0,120,1800 ./.:28:36:28:0,36,540 +20 10041701 . A ATG,ATATG, . . BaseQRankSum=0.848;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=0.959;RAW_MQandDP=363190,103;ReadPosRankSum=1.12 GT:AD:DP:GQ:PL:SB ./.:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 ./.:8,0,11,0:19:99:291,346,691,0,266,568,349,679,452,810:3,5,6,5 +20 10041702 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:0:29:0,0,182 +20 10041703 . G . . END=10041707 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:69:28:0,69,1035 +20 10041708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:40:28:0,40,739 +20 10041709 . G . . END=10041710 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:73:28:0,73,834 +20 10041711 . G . . END=10041712 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:29:0,81,1215 +20 10041713 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:75:30:0,75,870 +20 10041714 . T . . END=10041715 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041716 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:58:30:0,58,839 +20 10041717 . G . . END=10041719 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041720 . T . . END=10041730 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:72:28:0,72,1001 +20 10041731 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:69:28:0,69,1035 +20 10041732 . T . . END=10041739 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:26:0,72,823 +20 10041740 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:54:25:0,54,568 +20 10041741 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:64:27:0,64,724 +20 10041742 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:78:26:0,78,806 +20 10041743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:58:26:0,58,766 +20 10041744 . T . . END=10041748 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:70:26:0,70,817 +20 10041749 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:68:27:0,68,807 +20 10041750 . T . . END=10041752 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:75:28:0,75,1125 +20 10041753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:55:29:0,55,856 +20 10041754 . T . . END=10041761 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:28:0,72,871 +20 10041762 . T . . END=10041766 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:65:27:0,65,763 +20 10041767 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:28:0,72,1080 +20 10041768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:69:27:0,69,760 +20 10041769 . C . . END=10041780 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:72:24:0,72,727 +20 10041781 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:68:28:0,68,781 +20 10041782 . A . . END=10041784 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:81:27:0,81,806 +20 10041785 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:63:27:0,63,721 +20 10041786 . C . . END=10041793 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:81:27:0,81,850 +20 10041794 . T . . END=10041795 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:78:28:0,78,1170 +20 10041796 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:58:28:0,58,815 +20 10041797 . T . . END=10041810 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:73:26:0,73,810 +20 10041811 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:66:26:0,66,794 +20 10041812 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:75:25:0,75,766 +20 10041813 . C . . END=10041815 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:81:27:0,81,842 +20 10041816 . C . . END=10041818 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:78:27:0,78,1170 +20 10041819 . C . . END=10041821 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041822 . C . . END=10041824 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:75:29:0,75,854 +20 10041825 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:81:31:0,81,1215 +20 10041826 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:60:31:0,60,908 +20 10041827 . G . . END=10041833 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:87:29:0,87,893 +20 10041834 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:75:29:0,75,914 +20 10041835 . G . . END=10041837 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:87:29:0,87,917 +20 10041838 . T . . END=10041839 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,907 +20 10041840 . T . . END=10041845 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:84:30:0,84,1260 +20 10041846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:66:32:0,66,904 +20 10041847 . T . . END=10041849 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:32:0,84,1260 +20 10041850 . G . . END=10041851 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:78:29:0,78,1170 +20 10041852 . C . . END=10041853 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:33:81:32:0,81,1215 +20 10041854 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:79:31:0,79,913 +20 10041855 . C . . END=10041870 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:81:29:0,81,937 +20 10041871 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:67:31:0,67,912 +20 10041872 . T . . END=10041879 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:87:29:0,87,903 +20 10041880 . A . . END=10041882 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,924 +20 10041883 . G . . END=10041890 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:29:0,81,918 +20 10041891 . C . . END=10041896 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:72:28:0,72,1080 +20 10041897 . T . . END=10041901 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:66:25:0,66,780 +20 10041902 . A . . END=10041903 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:72:26:0,72,1080 +20 10041904 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:65:27:0,65,796 +20 10041905 . C . . END=10041906 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:75:27:0,75,1125 +20 10041907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:56:26:0,56,754 +20 10041908 . G . . END=10041909 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:72:24:0,72,713 +20 10041910 . C . . END=10041914 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:69:25:0,69,1035 +20 10041915 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:72:27:0,72,1080 +20 10041916 . C . . END=10041918 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:69:26:0,69,1035 +20 10041919 . C . . END=10041922 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:27:0,72,1080 +20 10041923 . C . . END=10041928 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:81:27:0,81,851 +20 10041929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,911 +20 10041930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:64:29:0,64,893 +20 10041931 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,897 +20 10041932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:82:31:0,82,879 +20 10041933 . T . . END=10041935 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:90:31:0,90,1350 +20 10041936 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:32:0,84,993 +20 10041937 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:64:32:0,64,930 +20 10041938 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041939 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:75:32:0,75,981 +20 10041940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041941 . T . . END=10041942 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:70:31:0,70,914 +20 10041943 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:87:31:0,87,1305 +20 10041944 . C . . END=10041945 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041946 . G . . END=10041949 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:31:0,84,1260 +20 10041950 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:69:32:0,69,930 +20 10041951 . C . . END=10041952 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:33:93:32:0,93,982 +20 10041953 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:87:34:0,87,1305 +20 10041954 . A . . END=10041958 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:90:33:0,90,1041 +20 10041959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:77:34:0,77,960 +20 10041960 . T . . END=10041962 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:96:35:0,96,1440 +20 10041963 . G . . END=10041964 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:99:35:0,105,1033 +20 10041965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:82:35:0,82,1025 +20 10041966 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:99:35:0,102,1530 +20 10041967 . A . . END=10041968 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:92:35:0,92,943 +20 10041969 . A . . END=10041970 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:86:35:0,86,1059 +20 10041971 . G . . END=10041976 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:36:0,105,1575 +20 10041977 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:88:35:0,88,1044 +20 10041978 . C . . END=10041981 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:99:35:0,102,1104 +20 10041982 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:89:36:0,89,968 +20 10041983 . G . . END=10041986 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:35:0,105,1007 +20 10041987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:92:36:0,92,1072 +20 10041988 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:38:99:38:0,105,1575 +20 10041989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:92:36:0,92,1097 +20 10041990 . G . . END=10041992 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:35:0,105,1095 +20 10041993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:94:37:0,94,1023 +20 10041994 . T . . END=10041997 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:38:0,102,1530 +20 10041998 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:79:39:0,79,1123 +20 10041999 . A . . END=10042006 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:38:0,105,1164 +20 10042007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:38:92:38:0,92,1163 +20 10042008 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:39:0,114,1710 +20 10042009 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:80:39:0,80,1154 +20 10042010 . T . . END=10042147 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:48:99:39:0,105,1263 +20 10042148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:49:73:49:0,73,1442 +20 10042149 . A . . END=10042174 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:47:99:45:0,120,1800 +20 10042175 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:49:90:49:0,90,1419 +20 10042176 . A . . END=10042282 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:51:99:42:0,108,1271 +20 10042283 . C . . END=10042284 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:41:90:41:0,90,1159 +20 10042285 . G . . END=10042318 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:46:99:42:0,114,1290 +20 10042319 . C T, . . BaseQRankSum=1.66;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=381051,108;ReadPosRankSum=-8.950e-01 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 ./.:21,21,0:42:99:563,0,514,626,577,1203:8,13,12,9 +20 10042320 . C . . END=10042340 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:48:99:43:0,117,1755 +20 10042341 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:46:94:46:0,94,1335 +20 10042342 . T . . END=10042611 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:47:99:40:0,103,1161 +20 10042612 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:40:95:40:0,95,1165 +20 10042613 . T . . END=10042618 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:40:99:39:0,114,1216 +20 10042619 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:38:98:38:0,98,1143 +20 10042620 . C . . END=10042760 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:48:99:40:0,114,1288 +20 10042761 . A G, . . BaseQRankSum=-2.960e-01;ClippingRankSum=0.00;DP=143;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=514800,143;ReadPosRankSum=-7.100e-02 GT:AD:DP:GQ:PL:SB ./.:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 ./.:23,29,0:52:99:761,0,602,830,689,1519:13,10,14,15 +20 10042762 . G . . END=10042828 GT:DP:GQ:MIN_DP:PL ./.:90:99:78:0,120,1800 ./.:59:99:51:0,120,1800 +20 10042829 . A G, . . BaseQRankSum=-1.650e-01;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=480169,134;ReadPosRankSum=-8.090e-01 GT:AD:DP:GQ:PL:SB ./.:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 ./.:24,31,0:55:99:780,0,566,852,659,1511:14,10,17,14 +20 10042830 . C . . END=10042935 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:52:99:38:0,102,1111 +20 10042936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:40:87:40:0,87,1152 +20 10042937 . C . . END=10042942 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:99:38:0,102,1530 +20 10042943 . A . . END=10042946 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:93:39:0,93,1395 +20 10042947 . T . . END=10042948 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:99:39:0,99,1485 +20 10042949 . G . . END=10042955 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:38:93:33:0,93,1395 +20 10042956 . A . . END=10042958 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:35:99:35:0,99,1485 +20 10042959 . T . . END=10042962 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:35:94:32:0,94,1021 +20 10042963 . A . . END=10042966 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:36:99:34:0,99,1485 +20 10042967 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:36:74:36:0,74,1048 +20 10042968 . A . . END=10042980 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:43:99:36:0,108,1088 +20 10042981 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:43:96:43:0,96,1172 +20 10042982 . C . . END=10043001 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:42:99:40:0,109,1146 +20 10043002 . A T, . . BaseQRankSum=3.99;DP=126;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=309600,86;ReadPosRankSum=-3.500e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:48,38,0:86:99:.:1316,0,1659,1460,1773,3233:19,29,18,20 ./.:.:42:99:40:0,109,1146,109,1146,1146 +20 10043003 . C . . END=10043005 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:99:40:0,109,1146 +20 10043006 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:95:42:0,95,1202 +20 10043007 . T . . END=10043164 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:52:99:41:0,102,1381 +20 10043165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:78:42:0,78,1184 +20 10043166 . T . . END=10043185 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:36:0,99,1133 +20 10043186 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:96:37:0,96,1091 +20 10043187 . T . . END=10043190 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:38:0,105,1575 +20 10043191 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1099 +20 10043192 . G . . END=10043199 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:37:0,106,1093 +20 10043200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:87:39:0,87,1093 +20 10043201 . A . . END=10043207 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,102,1530 +20 10043208 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:96:37:0,96,1440 +20 10043209 . G . . END=10043211 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,99,1485 +20 10043212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:97:37:0,97,1116 +20 10043213 . A . . END=10043214 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,102,1530 +20 10043215 . G . . END=10043220 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:90:33:0,90,1099 +20 10043221 . T . . END=10043224 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:87:34:0,87,1305 +20 10043225 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:35:0,90,1350 +20 10043226 . G . . END=10043228 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:87:31:0,87,1305 +20 10043229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:32:0,90,1350 +20 10043230 . A . . END=10043233 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:87:31:0,87,1305 +20 10043234 . A . . END=10043239 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:30:0,90,904 +20 10043240 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:77:31:0,77,904 +20 10043241 . A . . END=10043243 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:31:0,90,1350 +20 10043244 . T . . END=10043261 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:34:0,99,994 +20 10043262 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:92:37:0,92,1063 +20 10043263 . T . . END=10043438 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:99:36:0,102,1190 +20 10043439 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:87:39:0,87,1121 +20 10043440 . G . . END=10043471 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:37:0,99,1129 +20 10043472 . T . . END=10043478 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:96:35:0,96,1440 +20 10043479 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:77:36:0,77,968 +20 10043480 . G . . END=10043491 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:32:0,90,1015 +20 10043492 . A . . END=10043498 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:99:33:0,99,1076 +20 10043499 . G . . END=10043501 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:92:36:0,92,1084 +20 10043502 . T . . END=10043503 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:37:0,102,1530 +20 10043504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1152 +20 10043505 . T . . END=10043513 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:43:99:40:0,111,1665 +20 10043514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:89:46:0,89,1301 +20 10043515 . G . . END=10043694 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:49:99:38:0,100,1170 +20 10043695 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:90:38:0,90,1163 +20 10043696 . A . . END=10043698 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:37:0,99,1485 +20 10043699 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1150 +20 10043700 . T . . END=10043702 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:99:36:0,99,1485 +20 10043703 . C . . END=10043719 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:32:0,90,1084 +20 10043720 . G . . END=10043724 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:33:0,99,1039 +20 10043725 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:96:34:0,96,1440 +20 10043726 . T . . END=10043728 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:87:32:0,87,1305 +20 10043729 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:90:34:0,90,1350 +20 10043730 . T . . END=10043732 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:80:34:0,80,973 +20 10043733 . T . . END=10043740 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:93:33:0,93,1395 +20 10043741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:71:33:0,71,1003 +20 10043742 . C . . END=10043748 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:90:33:0,90,1350 +20 10043749 . T . . END=10043751 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:99:36:0,99,1485 +20 10043752 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:95:36:0,95,1088 +20 10043753 . T . . END=10043757 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:99:33:0,99,1043 +20 10043758 . C . . END=10043759 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:91:32:0,91,986 +20 10043760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:34:0,99,1485 +20 10043761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:91:34:0,91,1068 +20 10043762 . A . . END=10043763 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:34:0,102,1065 +20 10043764 . C . . END=10043768 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:82:35:0,82,1022 +20 10043769 . C . . END=10043791 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:33:0,90,1035 +20 10043792 . A . . END=10043798 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:84:32:0,84,1026 +20 10043799 . A . . END=10043808 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:90:30:0,90,941 +20 10043809 . A . . END=10043813 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:84:31:0,84,1260 +20 10043814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:74:32:0,74,995 +20 10043815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:81:31:0,81,1215 +20 10043816 . A . . END=10043838 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:26:72:25:0,72,800 +20 10043839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:25:47:25:0,47,724 +20 10043840 . G . . END=10043844 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:25:72:25:0,72,784 +20 10043845 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:27:63:27:0,63,774 +20 10043846 . A . . END=10043847 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:28:78:28:0,78,1170 +20 10043848 . C . . END=10043850 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:81:29:0,81,1215 +20 10043851 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:72:29:0,72,884 +20 10043852 . G . . END=10043853 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:84:28:0,84,920 +20 10043854 . A . . END=10043855 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:93:32:0,93,1395 +20 10043856 . A . . END=10043870 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:35:0,101,1086 +20 10043871 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:80:37:0,80,1055 +20 10043872 . C . . END=10043879 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,99,1485 +20 10043880 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:96:36:0,96,1102 +20 10043881 . C . . END=10043892 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:38:0,105,1189 +20 10043893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:92:40:0,92,1246 +20 10043894 . T . . END=10043916 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:38:0,108,1257 +20 10043917 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:98:39:0,98,1176 +20 10043918 . T . . END=10044038 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:99:38:0,102,1145 +20 10044039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:44:97:44:0,97,1300 +20 10044040 . A . . END=10044172 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:44:99:36:0,99,1058 +20 10044173 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:95:39:0,95,1116 +20 10044174 . G . . END=10044248 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:35:0,102,1120 +20 10044249 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:79:37:0,79,1079 +20 10044250 . C . . END=10044251 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:36:0,102,1530 +20 10044252 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:91:36:0,91,998 +20 10044253 . T . . END=10044279 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:34:0,101,1028 +20 10044280 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:90:39:0,90,1175 +20 10044281 . G . . END=10044282 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:39:0,106,1216 +20 10044283 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:85:37:0,85,1113 +20 10044284 . G . . END=10044649 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:50:99:36:0,102,1126 +20 10044650 . A G, . . BaseQRankSum=-5.504e+00;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=194400,54;ReadPosRankSum=0.426 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:44:0,104,1655,104,1655,1655 ./.:24,30,0:54:99:.:652,0,625,724,714,1438:14,10,17,13 +20 10044651 . T . . END=10044848 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:48:99:39:0,105,1212 +20 10044849 . A G, . . DP=98;ExcessHet=3.01;RAW_MQandDP=209641,59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,59,0:59:99:.:2120,177,0,2120,177,2120:0,0,22,37 ./.:.:48:99:39:0,105,1212,105,1212,1212 +20 10044850 . C . . END=10045077 GT:DP:GQ:MIN_DP:PL ./.:69:99:56:0,120,1800 ./.:48:99:39:0,105,1212 +20 10045078 . G T, . . DP=120;ExcessHet=3.01;RAW_MQandDP=279389,81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,81,0:81:99:.:3300,244,0,3300,244,3300:0,0,37,44 ./.:.:48:99:39:0,105,1212,105,1212,1212 +20 10045079 . C . . END=10045351 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:48:99:39:0,105,1212 +20 10045352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:45:87:45:0,87,1221 +20 10045353 . C . . END=10045495 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:46:99:42:0,105,1253 +20 10045496 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:47:95:47:0,95,1238 +20 10045497 . G . . END=10045512 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:48:99:45:0,120,1800 +20 10045513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:50:84:50:0,84,1420 +20 10045514 . T . . END=10045533 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:51:99:47:0,118,1535 +20 10045534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:49:80:49:0,80,1383 +20 10045535 . C . . END=10045552 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:43:99:34:0,99,1462 +20 10045553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:90:36:0,90,1068 +20 10045554 . T . . END=10045555 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10045556 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:75:36:0,75,1069 +20 10045557 . A . . END=10045558 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:36:0,102,1530 +20 10045559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:35:84:35:0,84,1055 +20 10045560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:37:91:37:0,91,1079 +20 10045561 . C . . END=10045583 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:99:36:0,105,1120 +20 10045584 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:37:95:37:0,95,1123 +20 10045585 . C . . END=10045606 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:40:99:37:0,100,1139 +20 10045607 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:87:38:0,87,1161 +20 10045608 . A . . END=10045611 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:99:39:0,111,1665 +20 10045612 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:89:39:0,89,1172 +20 10045613 . C . . END=10045624 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:40:99:38:0,105,1575 +20 10045625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:94:42:0,94,1284 +20 10045626 . A . . END=10045628 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:99:42:0,105,1575 +20 10045629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:94:42:0,94,1218 +20 10045630 . C . . END=10045631 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:99:41:0,100,1233 +20 10045632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:94:41:0,94,1251 +20 10045633 . A . . END=10045634 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:99:40:0,99,1485 +20 10045635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:88:38:0,88,1131 +20 10045636 . A . . END=10045637 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:99:38:0,102,1530 +20 10045638 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:87:38:0,87,1124 +20 10045639 . A . . END=10045640 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:36:0,102,1530 +20 10045641 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:86:36:0,86,1060 +20 10045642 . G C, . . BaseQRankSum=-4.850e-01;ClippingRankSum=0.00;DP=112;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=398210,112;ReadPosRankSum=-3.380e-01 GT:AD:DP:GQ:PL:SB ./.:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 ./.:18,13,0:31:99:304,0,478,358,518,875:9,9,2,11 +20 10045643 . A . . END=10045644 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:99:37:0,99,1124 +20 10045645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:63:39:0,63,1070 +20 10045646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:80:38:0,80,1104 +20 10045647 . C . . END=10045648 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:40:0,108,1210 +20 10045649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:48:40:0,48,1101 +20 10045650 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:82:42:0,82,1176 +20 10045651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,104,1280 +20 10045652 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:80:43:0,80,1264 +20 10045653 . A . . END=10045654 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:71:42:0,71,1162 +20 10045655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:93:43:0,93,1256 +20 10045656 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:62:42:0,62,1091 +20 10045657 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:34:42:0,34,1066 +20 10045658 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:15:42:0,15,1044 +20 10045659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:85:40:0,85,1142 +20 10045660 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,115,1230 +20 10045661 . T . . END=10045662 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:91:42:0,91,1198 +20 10045663 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:62:43:0,62,1193 +20 10045664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,117,1755 +20 10045665 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:88:41:0,88,1213 +20 10045666 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:71:41:0,71,1132 +20 10045667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:88:41:0,88,1206 +20 10045668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:78:43:0,78,1247 +20 10045669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:61:44:0,61,1212 +20 10045670 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:82:44:0,82,1255 +20 10045671 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:91:44:0,91,1257 +20 10045672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,111,1286 +20 10045673 . T . . END=10045674 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:91:42:0,91,1269 +20 10045675 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:74:43:0,74,1224 +20 10045676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:94:42:0,94,1288 +20 10045677 . G . . END=10045678 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:74:40:0,74,1158 +20 10045679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:81:42:0,81,1230 +20 10045680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:96:43:0,96,1292 +20 10045681 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:69:43:0,69,1241 +20 10045682 . A . . END=10045683 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:94:43:0,94,1230 +20 10045684 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:99:44:0,120,1800 +20 10045685 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:89:41:0,89,1260 +20 10045686 . G . . END=10045688 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:42:0,99,1300 +20 10045689 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:77:46:0,77,1332 +20 10045690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:45:0,102,1390 +20 10045691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:75:46:0,75,1303 +20 10045692 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:46:0,104,1411 +20 10045693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:90:46:0,90,1325 +20 10045694 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:46:0,120,1800 +20 10045695 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:98:44:0,98,1283 +20 10045696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:45:0,102,1322 +20 10045697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:98:44:0,98,1285 +20 10045698 . C . . END=10045706 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:99:46:0,104,1330 +20 10045707 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:91:46:0,91,1309 +20 10045708 . A . . END=10045711 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:44:0,99,1267 +20 10045712 . A . . END=10045713 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:93:46:0,93,1343 +20 10045714 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:46:0,104,1361 +20 10045715 . T . . END=10045718 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:95:43:0,95,1282 +20 10045719 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:99:43:0,120,1800 +20 10045720 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:96:43:0,96,1324 +20 10045721 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:99:44:0,99,1356 +20 10045722 . T . . END=10045726 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:95:43:0,95,1249 +20 10045727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:52:44:0,52,1204 +20 10045728 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:97:44:0,97,1320 +20 10045729 . T . . END=10045730 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:45:0,101,1385 +20 10045731 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:91:45:0,91,1359 +20 10045732 . C . . END=10045734 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:43:0,102,1331 +20 10045735 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:71:45:0,71,1278 +20 10045736 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:99:44:0,99,1284 +20 10045737 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:89:45:0,89,1331 +20 10045738 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,113,1296 +20 10045739 . T . . END=10045740 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:92:42:0,92,1257 +20 10045741 . T . . END=10045742 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:99:42:0,120,1800 +20 10045743 . A . . END=10045744 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:93:42:0,93,1229 +20 10045745 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:99:41:0,120,1800 +20 10045746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:90:41:0,90,1240 +20 10045747 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:87:40:0,87,1214 +20 10045748 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:91:41:0,91,1263 +20 10045749 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:40:0,114,1710 +20 10045750 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:92:40:0,92,1170 +20 10045751 . G . . END=10045752 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:86:40:0,86,1185 +20 10045753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:40:0,114,1710 +20 10045754 . C . . END=10045755 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:67:39:0,67,1159 +20 10045756 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:87:40:0,87,1187 +20 10045757 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:91:41:0,91,1289 +20 10045758 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:99:41:0,105,1575 +20 10045759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:76:40:0,76,1150 +20 10045760 . C . . END=10045767 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:83:39:0,83,1169 +20 10045768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:64:38:0,64,1124 +20 10045769 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:79:38:0,79,1129 +20 10045770 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:99:39:0,99,1485 +20 10045771 . T . . END=10045773 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:84:39:0,84,1155 +20 10045774 . C . . END=10045804 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:99:36:0,103,1167 +20 10045805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:93:39:0,93,1154 +20 10045806 . A . . END=10045882 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:37:0,102,1167 +20 10045883 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:84:39:0,84,1149 +20 10045884 . T . . END=10045890 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:99:39:0,111,1665 +20 10045891 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:91:39:0,91,1141 +20 10045892 . T . . END=10045921 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:35:0,99,1120 +20 10045922 . G . . END=10045926 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:90:32:0,90,1350 +20 10045927 . G . . END=10045936 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:81:33:0,81,1023 +20 10045937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:63:32:0,63,889 +20 10045938 . C . . END=10045939 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:30:87:29:0,87,905 +20 10045940 . T . . END=10045955 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:31:0,90,968 +20 10045956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:84:34:0,84,1003 +20 10045957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:93:33:0,93,1395 +20 10045958 . A . . END=10045959 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:87:31:0,87,1305 +20 10045960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:78:34:0,78,1170 +20 10045961 . C . . END=10045968 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:35:81:31:0,81,1215 +20 10045969 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:32:0,90,1350 +20 10045970 . A . . END=10045971 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:87:32:0,87,1305 +20 10045972 . A . . END=10045973 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:90:34:0,90,1350 +20 10045974 . G . . END=10045989 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:81:30:0,81,1215 +20 10045990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:74:33:0,74,998 +20 10045991 . T . . END=10045992 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:84:33:0,84,1260 +20 10045993 . A . . END=10046011 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:30:0,90,961 +20 10046012 . C . . END=10046021 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:31:84:31:0,84,1260 +20 10046022 . G . . END=10046042 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:31:0,90,982 +20 10046043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:85:33:0,85,988 +20 10046044 . A . . END=10046121 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:34:0,99,1110 +20 10046122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:91:45:0,91,1326 +20 10046123 . A . . END=10046126 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:43:0,120,1800 +20 10046127 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:90:45:0,90,1156 +20 10046128 . A . . END=10046146 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:99:44:0,102,1456 +20 10046147 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:93:44:0,93,1395 +20 10046148 . G . . END=10046151 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:81:42:0,81,1215 +20 10046152 . A . . END=10046153 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:78:43:0,78,1170 +20 10046154 . G . . END=10046156 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:60:43:0,60,900 +20 10046157 . G . . END=10046162 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:54:41:0,54,810 +20 10046163 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:51:47:0,51,765 +20 10046164 . A . . END=10046167 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:45:46:0,45,675 +20 10046168 . A . . END=10046172 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:51:33:49:0,33,495 +20 10046173 . A . . END=10046174 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:50:27:50:0,27,405 +20 10046175 . A . . END=10046176 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:48:18:47:0,18,270 +20 10046177 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:50:15:50:0,15,225 +20 10046178 . AAGAAAGAAAG A, . . DP=110;ExcessHet=3.01;RAW_MQandDP=324745,110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046179 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046180 . G *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046181 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046182 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046183 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046184 . G *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046185 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046186 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046187 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046188 . G *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046189 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:50:0:50:0,0,0 +20 10046190 . G . . END=10046197 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:48:99:45:0,100,1308 +20 10046198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:46:71:46:0,71,1310 +20 10046199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:99:45:0,100,1323 +20 10046200 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:43:94:43:0,94,1211 +20 10046201 . A . . END=10046202 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:82:43:0,82,1212 +20 10046203 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:99:45:0,100,1331 +20 10046204 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:96:44:0,96,1209 +20 10046205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:89:45:0,89,1297 +20 10046206 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:43:94:43:0,94,1237 +20 10046207 . A . . END=10046216 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:99:42:0,110,1221 +20 10046217 . G . . END=10046221 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:42:96:39:0,96,1440 +20 10046222 . A . . END=10046223 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:87:37:0,87,1305 +20 10046224 . A . . END=10046225 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:90:38:0,90,1350 +20 10046226 . A . . END=10046229 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:41:99:40:0,99,1485 +20 10046230 . A . . END=10046232 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:96:37:0,96,1132 +20 10046233 . A . . END=10046234 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,102,1530 +20 10046235 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:97:38:0,97,1099 +20 10046236 . A . . END=10046239 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:35:0,102,1530 +20 10046240 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:69:36:0,69,861 +20 10046241 . G . . END=10046245 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:90:36:0,90,1350 +20 10046246 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,99,1485 +20 10046247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:85:38:0,85,1066 +20 10046248 . A . . END=10046250 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,99,1485 +20 10046251 . G . . END=10046259 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:93:36:0,93,1084 +20 10046260 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046261 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:96:35:0,96,1440 +20 10046262 . A . . END=10046264 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046265 . G . . END=10046267 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:87:33:0,87,977 +20 10046268 . A . . END=10046269 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:93:36:0,93,1395 +20 10046270 . A . . END=10046277 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,99,1110 +20 10046278 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:84:37:0,84,1260 +20 10046279 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:71:35:0,71,923 +20 10046280 . A . . END=10046286 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:84:34:0,84,1072 +20 10046287 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:34:90:34:0,90,1350 +20 10046288 . A . . END=10046294 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:81:31:0,81,1215 +20 10046295 . G . . END=10046300 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:75:28:0,75,1125 +20 10046301 . A . . END=10046303 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:81:29:0,81,1215 +20 10046304 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:78:29:0,78,1170 +20 10046305 . A . . END=10046306 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:81:29:0,81,1215 +20 10046307 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:28:63:28:0,63,762 +20 10046308 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:27:47:27:0,47,676 +20 10046309 . A . . END=10046310 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:84:29:0,84,1260 +20 10046311 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:27:64:27:0,64,740 +20 10046312 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:85:32:0,85,981 +20 10046313 . A . . END=10046316 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:93:31:0,93,961 +20 10046317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:37:30:0,37,675 +20 10046318 . G . . END=10046323 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:84:29:0,84,787 +20 10046324 . A . . END=10046326 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:70:29:0,70,700 +20 10046327 . A . . END=10046329 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:81:30:0,81,1215 +20 10046330 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:77:30:0,77,790 +20 10046331 . A . . END=10046334 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:84:30:0,84,1260 +20 10046335 . A . . END=10046336 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:90:31:0,90,1350 +20 10046337 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:80:32:0,80,911 +20 10046338 . A . . END=10046340 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:90:31:0,90,864 +20 10046341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:33:71:33:0,71,799 +20 10046342 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046343 . G . . END=10046344 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:34:83:33:0,83,976 +20 10046345 . A . . END=10046346 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:34:0,99,1485 +20 10046347 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:80:35:0,80,988 +20 10046348 . G . . END=10046393 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:40:99:36:0,100,1064 +20 10046394 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:87:38:0,87,1082 +20 10046395 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:99:39:0,108,1620 +20 10046396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:86:39:0,86,1197 +20 10046397 . A . . END=10046403 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,99,1485 +20 10046404 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:97:38:0,97,1168 +20 10046405 . G . . END=10046411 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:37:0,99,1485 +20 10046412 . A . . END=10046420 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:92:36:0,92,1053 +20 10046421 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:37:0,99,1485 +20 10046422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:92:36:0,92,1036 +20 10046423 . A . . END=10046430 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:90:35:0,90,1054 +20 10046432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:82:36:0,82,1046 +20 10046433 . A . . END=10046435 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,105,1155 +20 10046436 . A . . END=10046437 GT:DP:GQ:MIN_DP:PL ./.:68:96:65:0,96,1440 ./.:38:99:37:0,105,1155 +20 10046438 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:96:65:0,96,1440 ./.:38:96:38:0,96,1184 +20 10046439 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:66:0,99,1485 ./.:40:99:38:0,108,1620 +20 10046440 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:93:66:0,93,1395 ./.:40:99:38:0,108,1620 +20 10046441 . C . . END=10046443 GT:DP:GQ:MIN_DP:PL ./.:62:87:54:0,87,1305 ./.:40:99:38:0,108,1620 +20 10046444 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:54:39:0,54,1348 ./.:40:99:38:0,108,1620 +20 10046445 . T . . END=10046448 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:40:99:38:0,108,1620 +20 10046449 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:39:87:39:0,87,1145 +20 10046450 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:72:34:0,72,1251 ./.:38:99:37:0,105,1575 +20 10046451 . C . . END=10046453 GT:DP:GQ:MIN_DP:PL ./.:33:84:32:0,84,1260 ./.:38:99:37:0,105,1575 +20 10046454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:87:31:0,87,1305 ./.:38:99:37:0,105,1575 +20 10046456 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046457 . C . . END=10046458 GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:38:99:37:0,105,1575 +20 10046459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046460 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:39:76:39:0,76,1134 +20 10046461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:42:99:39:0,99,1128 +20 10046462 . C . . END=10046475 GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:42:99:39:0,99,1128 +20 10046476 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:43:97:43:0,97,1215 +20 10046477 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:45:99:39:0,108,1306 +20 10046478 . T . . END=10046479 GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:45:99:39:0,108,1306 +20 10046480 . C . . END=10046483 GT:DP:GQ:MIN_DP:PL ./.:39:99:39:0,99,1485 ./.:45:99:39:0,108,1306 +20 10046484 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:96:38:0,96,1440 ./.:45:99:39:0,108,1306 +20 10046485 . G . . END=10046491 GT:DP:GQ:MIN_DP:PL ./.:39:99:36:0,100,1440 ./.:45:99:39:0,108,1306 +20 10046492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:82:38:0,82,1478 ./.:45:99:39:0,108,1306 +20 10046493 . T . . END=10046500 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:45:99:39:0,108,1306 +20 10046501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:40:96:40:0,96,1181 +20 10046502 . T . . END=10046512 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:39:99:37:0,104,1121 +20 10046513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:36:97:36:0,97,1119 +20 10046514 . A . . END=10046516 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:99:36:0,108,1023 +20 10046517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:90:37:0,90,1121 +20 10046518 . G . . END=10046530 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:39:99:37:0,105,1575 +20 10046531 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:38:84:38:0,84,1128 +20 10046532 . A . . END=10046536 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:99:35:0,99,1485 +20 10046537 . A G, . . BaseQRankSum=-3.909e+00;DP=92;ExcessHet=3.01;MQRankSum=0.395;RAW_MQandDP=169333,57;ReadPosRankSum=0.727 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:28,29,0:57:99:.:848,0,902,932,988,1920:13,15,10,19 ./.:.:37:99:35:0,99,1485,99,1485,1485 +20 10046538 . T . . END=10046547 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:99:35:0,99,1485 +20 10046548 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:35:96:35:0,96,1440 +20 10046549 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:99:37:0,99,1485 +20 10046550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:96:37:0,96,1070 +20 10046551 . C . . END=10046557 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:36:99:34:0,99,1485 +20 10046558 . T . . END=10046569 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:34:90:32:0,90,1350 +20 10046570 . T . . END=10046575 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:29:0,81,1215 +20 10046576 . C . . END=10046578 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:78:31:0,78,1170 +20 10046579 . A . . END=10046590 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:32:81:30:0,81,910 +20 10046591 . T . . END=10046592 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:33:90:32:0,90,1350 +20 10046593 . C . . END=10046598 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:30:0,81,1215 +20 10046599 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:30:79:30:0,79,913 +20 10046600 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:31:0,81,1215 +20 10046601 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:30:55:30:0,55,871 +20 10046602 . C . . END=10046620 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:72:28:0,72,852 +20 10046621 . T . . END=10046630 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:30:0,81,1215 +20 10046631 . A . . END=10046632 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:71:28:0,71,858 +20 10046633 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:87:29:0,87,927 +20 10046634 . A . . END=10046635 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:93:31:0,93,972 +20 10046636 . T . . . GT:DP:GQ:MIN_DP:PL ./.:44:92:44:0,92,1722 ./.:31:64:31:0,64,943 +20 10046637 . T . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:44:0,104,1719 ./.:31:90:30:0,90,952 +20 10046638 . C . . . GT:DP:GQ:MIN_DP:PL ./.:45:95:45:0,95,1751 ./.:31:90:30:0,90,952 +20 10046639 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:30:0,90,952 +20 10046640 . T . . END=10046641 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:62:31:0,62,939 +20 10046642 . A . . END=10046643 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10046644 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046645 . T . . END=10046646 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:87:33:0,87,1051 +20 10046647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10046648 . C . . END=10046652 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046653 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:36:0,90,995 +20 10046654 . C . . END=10046656 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:36:0,105,1575 +20 10046657 . C . . END=10046658 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:93:37:0,93,1160 +20 10046659 . G . . END=10046672 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,99,1185 +20 10046673 . C . . END=10046674 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:89:40:0,89,1179 +20 10046675 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:72:40:0,72,1157 +20 10046676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:87:40:0,87,1218 +20 10046677 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:52:39:0,52,1127 +20 10046678 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:83:39:0,83,1196 +20 10046679 . T . . END=10046681 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,114,1263 +20 10046682 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:85:39:0,85,1222 +20 10046683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,114,1710 +20 10046684 . C . . END=10046685 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:81:38:0,81,1116 +20 10046686 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:58:40:0,58,1166 +20 10046687 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:88:40:0,88,1269 +20 10046688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,114,1710 +20 10046689 . G . . END=10046691 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1176 +20 10046692 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:71:40:0,71,1154 +20 10046693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,111,1665 +20 10046694 . C . . END=10046695 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:87:40:0,87,1206 +20 10046696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:72:39:0,72,1141 +20 10046697 . C . . END=10046698 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:81:38:0,81,1137 +20 10046699 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:79:41:0,79,1195 +20 10046700 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:81:38:0,81,1167 +20 10046701 . C . . END=10046762 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:37:0,105,1164 +20 10046763 . T . . END=10046764 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:40:0,96,1440 +20 10046765 . C . . END=10046819 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:37:0,99,1128 +20 10046820 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:90:41:0,90,1162 +20 10046821 . A . . END=10046826 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,103,1090 +20 10046827 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:72:39:0,72,1026 +20 10046828 . T C, . . DP=75;ExcessHet=3.01;RAW_MQandDP=115200,32 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:0,32,0:32:96:.:993,96,0,993,96,993:0,0,17,15 +20 10046829 . T . . END=10046841 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,102,1098 +20 10046842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:83:37:0,83,1067 +20 10046843 . T . . END=10046850 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:93:35:0,93,1395 +20 10046851 . A . . END=10046852 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,102,1126 +20 10046853 . T . . END=10046856 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:36:0,96,1440 +20 10046857 . G . . END=10046858 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10046859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:96:36:0,96,1048 +20 10046860 . A . . END=10046862 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,99,1485 +20 10046863 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:96:39:0,96,1440 +20 10046864 . T . . END=10046874 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10046875 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:84:34:0,84,961 +20 10046876 . T . . END=10046880 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,961 +20 10046881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:89:34:0,89,934 +20 10046882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046883 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:80:33:0,80,979 +20 10046884 . C . . END=10046907 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:34:0,99,953 +20 10046908 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:98:37:0,98,1128 +20 10046909 . T . . END=10046911 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,102,1530 +20 10046912 . T . . END=10046915 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:36:0,96,1440 +20 10046916 . C . . END=10046917 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1530 +20 10046918 . G . . END=10046919 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:37:0,96,1084 +20 10046920 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:62:37:0,62,1033 +20 10046921 . A . . END=10046922 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:37:0,96,1044 +20 10046923 . C . . END=10046946 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:35:0,99,1123 +20 10046947 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:98:39:0,98,1151 +20 10046948 . T . . END=10046989 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:35:0,100,1097 +20 10046990 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:90:41:0,90,1185 +20 10046991 . A . . END=10047004 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:35:0,99,1485 +20 10047005 . A . . END=10047011 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:33:0,90,1002 +20 10047012 . A . . END=10047019 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:33:0,99,954 +20 10047020 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:86:35:0,86,1042 +20 10047021 . T . . END=10047023 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,102,1530 +20 10047024 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:93:36:0,93,1076 +20 10047025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,102,1530 +20 10047026 . C . . END=10047027 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:92:35:0,92,1066 +20 10047028 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:87:34:0,87,990 +20 10047029 . T . . END=10047037 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:92:34:0,92,1033 +20 10047038 . T C, . . BaseQRankSum=-1.461e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.254 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:11,20,0:31:99:.:553,0,276,586,336,922:6,5,12,8 +20 10047039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10047040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:67:34:0,67,999 +20 10047042 . A . . END=10047053 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047054 . T . . END=10047062 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:33:0,90,1075 +20 10047063 . A . . END=10047069 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:81:34:0,81,1215 +20 10047070 . G . . END=10047072 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:35:0,90,1350 +20 10047073 . T . . END=10047077 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047078 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:69:34:0,69,1066 +20 10047079 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047080 . A . . END=10047106 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:90:32:0,90,1110 +20 10047107 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:72:34:0,72,934 +20 10047108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:69:32:0,69,867 +20 10047109 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:80:32:0,80,901 +20 10047110 . C . . END=10047111 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:91:34:0,91,1027 +20 10047113 . T . . END=10047119 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,995 +20 10047120 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:89:36:0,89,1029 +20 10047121 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:94:35:0,94,1047 +20 10047122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:67:34:0,67,914 +20 10047123 . A . . END=10047125 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047126 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:86:35:0,86,900 +20 10047127 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:93:35:0,93,945 +20 10047128 . T . . END=10047132 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,1002 +20 10047133 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:96:32:0,96,1014 +20 10047134 . C . . END=10047136 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,99,1485 +20 10047137 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:80:35:0,80,1081 +20 10047138 . C . . END=10047139 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:91:32:0,91,983 +20 10047140 . T . . END=10047141 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,102,1021 +20 10047142 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:69:34:0,69,951 +20 10047143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,105,1074 +20 10047144 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:92:36:0,92,1046 +20 10047145 . C . . END=10047146 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,105,1017 +20 10047147 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:89:35:0,89,1033 +20 10047148 . C . . END=10047168 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:34:0,99,1065 +20 10047169 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:95:37:0,95,1083 +20 10047170 . C . . END=10047216 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:36:0,99,1149 +20 10047217 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:98:43:0,98,1236 +20 10047218 . T . . END=10047224 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:41:0,103,1232 +20 10047225 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:98:40:0,98,1212 +20 10047226 . A . . END=10047266 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,100,1127 +20 10047267 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:87:41:0,87,1168 +20 10047268 . C . . END=10047274 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,111,1665 +20 10047275 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:95:38:0,95,1129 +20 10047276 . T . . END=10047286 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,101,1142 +20 10047287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:39:0,93,1127 +20 10047288 . C . . END=10047291 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:40:0,111,1665 +20 10047292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:87:42:0,87,1146 +20 10047293 . T . . END=10047340 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:42:0,99,1294 +20 10047341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:83:42:0,83,1157 +20 10047342 . T . . END=10047403 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,100,1185 +20 10047404 . T . . END=10047406 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:92:41:0,92,1255 +20 10047407 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:88:41:0,88,1226 +20 10047408 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:41:0,111,1665 +20 10047409 . A . . END=10047414 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:82:39:0,82,1163 +20 10047415 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,111,1665 +20 10047416 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1204 +20 10047417 . T . . END=10047422 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:38:0,111,1665 +20 10047423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:39:0,93,1199 +20 10047424 . C . . END=10047434 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,103,1186 +20 10047435 . G A, . . BaseQRankSum=2.75;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=-5.400e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:20,21,0:41:99:.:529,0,417,588,479,1067:13,7,9,12 +20 10047436 . C . . END=10048125 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:51:99:39:0,99,1200 +20 10048126 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:97:42:0,97,1268 +20 10048127 . T . . END=10048134 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:34:0,99,1485 +20 10048135 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:35:0,90,1071 +20 10048136 . C . . END=10048153 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,100,1163 +20 10048154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:93:37:0,93,1138 +20 10048155 . A . . END=10048159 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1193 +20 10048160 . T . . END=10048169 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:91:35:0,91,1162 +20 10048170 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:84:35:0,84,1085 +20 10048171 . A . . END=10048172 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:93:34:0,93,1395 +20 10048173 . A . . END=10048174 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,99,1485 +20 10048175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:85:37:0,85,1174 +20 10048176 . T . . END=10048187 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,102,1530 +20 10048188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:98:38:0,98,1207 +20 10048189 . T . . END=10048191 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,108,1620 +20 10048192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:91:36:0,91,1058 +20 10048193 . C . . END=10048223 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,102,1194 +20 10048224 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:94:37:0,94,1138 +20 10048225 . C . . END=10048301 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:37:0,101,1181 +20 10048302 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:93:40:0,93,1203 +20 10048303 . A . . END=10048310 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,108,1166 +20 10048311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:96:39:0,96,1213 +20 10048312 . G . . END=10048314 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,108,1620 +20 10048315 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:41:0,96,1209 +20 10048316 . A . . END=10048327 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,99,1485 +20 10048328 . C . . END=10048329 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:94:38:0,94,1057 +20 10048330 . G . . END=10048331 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,105,1575 +20 10048332 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:79:36:0,79,1078 +20 10048333 . T . . END=10048334 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10048335 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:88:35:0,88,1045 +20 10048336 . T . . END=10048392 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:36:0,99,1243 +20 10048393 . C G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=158400,44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:78:99:43:.:.:0,101,1614,101,1614,1614 ./.:0,43,0:43:99:.:0|1:10048393_C_G:1609,132,0,1609,132,1609:0,0,23,20 +20 10048394 . G . . END=10048399 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:47:0,120,1800 +20 10048400 . C T, . . BaseQRankSum=2.20;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=1.71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:78:99:43:.:.:0,101,1614,101,1614,1614 ./.:24,21,0:45:99:.:0|1:10048393_C_G:467,0,468,537,530,1067:11,13,13,8 +20 10048401 . G . . END=10048541 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:38:0,102,1362 +20 10048542 . C . . END=10048555 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:93:35:0,93,1395 +20 10048556 . T . . END=10048558 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10048559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10048560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,102,1530 +20 10048561 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:78:38:0,78,1100 +20 10048562 . T . . END=10048577 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,99,1181 +20 10048578 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:88:39:0,88,1094 +20 10048579 . A . . END=10048594 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,100,1209 +20 10048595 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:98:44:0,98,1207 +20 10048596 . T . . END=10048602 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:46:99:44:0,120,1800 +20 10048603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:83:44:0,83,1209 +20 10048604 . C . . END=10048607 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:45:99:43:0,120,1800 +20 10048608 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:47:95:47:0,95,1276 +20 10048609 . T . . END=10048694 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:40:0,100,1169 +20 10048695 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:87:42:0,87,1232 +20 10048696 . C . . END=10048699 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:43:0,102,1530 +20 10048700 . A . . END=10048701 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:96:43:0,96,1440 +20 10048702 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:89:43:0,89,1279 +20 10048703 . T . . END=10048707 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:38:0,93,1395 +20 10048708 . A . . END=10048711 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10048712 . A . . END=10048715 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10048716 . T . . END=10048717 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10048718 . A . . END=10048723 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:34:0,90,1003 +20 10048724 . T . . END=10048725 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,99,1485 +20 10048726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:87:35:0,87,1305 +20 10048727 . T . . END=10048729 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:36:0,90,1350 +20 10048730 . A . . END=10048882 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:35:0,99,1043 +20 10048883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:41:0,96,1217 +20 10048884 . T . . END=10048958 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:35:0,99,1060 +20 10048959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:74:36:0,74,1064 +20 10048960 . G . . END=10048964 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:38:0,102,1530 +20 10048965 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:92:37:0,92,1078 +20 10048966 . T . . END=10048983 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:33:0,99,1009 +20 10048984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1120 +20 10048985 . G . . END=10048987 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,111,1665 +20 10048988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:97:38:0,97,1141 +20 10048989 . A . . END=10048994 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,103,1166 +20 10048995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:87:39:0,87,1171 +20 10048996 . C . . END=10048997 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,111,1665 +20 10048998 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:89:38:0,89,1130 +20 10048999 . A . . END=10049005 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1153 +20 10049006 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:94:37:0,94,1114 +20 10049007 . G . . END=10049011 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:34:0,102,1049 +20 10049012 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:97:36:0,97,1103 +20 10049013 . A . . END=10049015 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:33:0,99,1059 +20 10049016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10049017 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10049018 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:76:35:0,76,1041 +20 10049019 . T . . END=10049022 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,99,1485 +20 10049023 . G . . END=10049024 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:96:36:0,96,1440 +20 10049025 . C . . END=10049026 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:87:36:0,87,1305 +20 10049027 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:77:35:0,77,1060 +20 10049028 . T . . END=10049030 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:84:35:0,84,1260 +20 10049031 . T . . END=10049034 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:75:33:0,75,1125 +20 10049035 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:81:32:0,81,1215 +20 10049036 . T . . END=10049053 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:28:72:26:0,72,1080 +20 10049054 . C . . END=10049058 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:81:29:0,81,1215 +20 10049059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:62:30:0,62,902 +20 10049060 . G . . END=10049066 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049067 . T . . END=10049070 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:30:0,90,1017 +20 10049071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:64:30:0,64,960 +20 10049072 . A . . END=10049074 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049075 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:31:0,90,1350 +20 10049076 . A . . END=10049078 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:87:31:0,87,1305 +20 10049079 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:74:30:0,74,945 +20 10049080 . A . . END=10049081 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:30:0,81,1215 +20 10049082 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:70:30:0,70,948 +20 10049083 . T . . END=10049106 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:29:0,81,1215 +20 10049107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:90:30:0,90,972 +20 10049108 . C . . END=10049119 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:30:0,81,1215 +20 10049120 . A G, . . BaseQRankSum=0.571;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=-1.548e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:11,22,0:33:99:.:567,0,223,599,288,888:7,4,13,9 +20 10049121 . G . . END=10049123 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049124 . C . . END=10049126 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:31:0,90,977 +20 10049127 . G . . END=10049128 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:99:33:0,99,1028 +20 10049129 . G . . END=10049130 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:33:0,96,1440 +20 10049131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10049132 . T . . END=10049133 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:91:35:0,91,1081 +20 10049134 . C . . END=10049137 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:36:0,105,1575 +20 10049138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:84:36:0,84,1049 +20 10049139 . G . . END=10049167 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:34:0,102,1069 +20 10049168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:88:38:0,88,1145 +20 10049169 . G . . END=10049404 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:48:99:39:0,110,1306 +20 10049405 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:47:97:47:0,97,1378 +20 10049406 . C . . END=10049516 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:39:0,100,1197 +20 10049517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:94:42:0,94,1275 +20 10049518 . A . . END=10049528 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,100,1160 +20 10049529 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:93:40:0,93,1242 +20 10049530 . G . . END=10049538 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:41:0,106,1219 +20 10049539 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:94:43:0,94,1255 +20 10049540 . A . . END=10049541 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:42:0,109,1252 +20 10049542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:93:41:0,93,1220 +20 10049543 . T . . END=10049834 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:51:99:40:0,104,1115 +20 10049835 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:89:44:0,89,1278 +20 10049836 . A . . END=10050160 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:39:0,99,1204 +20 10050161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:75:68:0,75,2271 ./.:49:99:39:0,99,1204 +20 10050162 . C . . END=10050254 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:49:99:39:0,99,1204 +20 10050255 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:94:39:0,94,1149 +20 10050256 . A . . END=10050261 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:37:0,99,1485 +20 10050262 . C . . END=10050268 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:90:34:0,90,1099 +20 10050269 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10050270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10050271 . A . . END=10050275 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:36:0,99,1485 +20 10050276 . G . . END=10050278 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:36:0,93,1395 +20 10050279 . G . . END=10050298 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:34:0,102,1062 +20 10050299 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10050300 . C . . END=10050308 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:99:36:0,99,1485 +20 10050309 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:95:37:0,95,995 +20 10050310 . G . . END=10050321 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:99:36:0,99,1485 +20 10050322 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:81:36:0,81,1075 +20 10050323 . A . . END=10050325 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050326 . A . . END=10050335 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:34:0,93,1111 +20 10050336 . T . . END=10050340 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:33:0,99,1039 +20 10050341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:88:33:0,88,1022 +20 10050342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:99:33:0,99,1045 +20 10050343 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:80:35:0,80,1056 +20 10050344 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050345 . G . . END=10050346 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:96:36:0,96,1440 +20 10050347 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:88:37:0,88,1046 +20 10050348 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:96:37:0,96,1440 +20 10050349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:83:37:0,83,1091 +20 10050350 . A . . END=10050351 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:92:35:0,92,1081 +20 10050352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:83:37:0,83,1096 +20 10050353 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10050354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:35:0,86,1028 +20 10050355 . T . . END=10050356 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:93:37:0,93,1093 +20 10050357 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:84:36:0,84,1064 +20 10050358 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:90:34:0,90,1350 +20 10050359 . C . . END=10050360 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:34:0,86,1041 +20 10050361 . C . . END=10050368 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10050369 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:29:87:29:0,87,962 +20 10050370 . T . . END=10050371 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:93:31:0,93,1007 +20 10050372 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:30:89:30:0,89,885 +20 10050373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:76:31:0,76,907 +20 10050374 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:93:31:0,93,987 +20 10050375 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:30:68:30:0,68,839 +20 10050376 . C . . END=10050379 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:30:0,90,951 +20 10050380 . C . . END=10050381 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:84:31:0,84,1260 +20 10050382 . A . . END=10050383 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:73:31:0,73,902 +20 10050384 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:87:31:0,87,1305 +20 10050385 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:78:31:0,78,899 +20 10050386 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:90:32:0,90,1350 +20 10050387 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:76:32:0,76,946 +20 10050388 . T . . END=10050389 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:96:32:0,96,1046 +20 10050390 . C . . END=10050394 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:34:0,99,1059 +20 10050395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:87:34:0,87,1016 +20 10050396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:34:0,102,1089 +20 10050397 . C . . END=10050399 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10050400 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10050401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:72:34:0,72,1022 +20 10050402 . C . . END=10050403 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10050404 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:92:36:0,92,1065 +20 10050405 . T . . END=10050409 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050410 . C . . END=10050413 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:35:0,93,1177 +20 10050414 . C . . END=10050417 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:38:0,99,1485 +20 10050418 . A . . END=10050422 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:93:36:0,93,1138 +20 10050423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:75:36:0,75,1100 +20 10050424 . C . . END=10050429 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:90:33:0,90,1004 +20 10050430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:77:31:0,77,901 +20 10050431 . A . . END=10050432 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:31:0,90,1350 +20 10050433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:29:87:29:0,87,899 +20 10050434 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:31:0,90,1350 +20 10050435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:80:32:0,80,968 +20 10050436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10050437 . T . . END=10050459 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:34:0,99,1046 +20 10050460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:98:33:0,98,1035 +20 10050461 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:99:35:0,102,1530 +20 10050462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:35:0,86,1053 +20 10050463 . C . . END=10050627 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:99:34:0,99,1079 +20 10050628 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:42:92:42:0,92,1221 +20 10050629 . T . . END=10050666 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:43:99:38:0,102,1264 +20 10050667 . C T, . . DP=93;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:52:0,120,1800,120,1800,1800 ./.:0,38,0:38:99:.:1185,114,0,1185,114,1185:0,0,20,18 +20 10050668 . C . . END=10050672 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:40:99:37:0,108,1620 +20 10050673 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:81:38:0,81,1146 +20 10050674 . T . . END=10050704 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:36:0,101,1124 +20 10050705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:91:38:0,91,1206 +20 10050706 . T . . END=10050713 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:38:0,111,1665 +20 10050714 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:94:41:0,94,1250 +20 10050715 . T . . END=10050735 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:40:99:39:0,100,1161 +20 10050736 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:92:41:0,92,1193 +20 10050737 . C . . END=10050817 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:43:99:38:0,104,1173 +20 10050818 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:95:37:0,95,1094 +20 10050819 . C . . END=10050827 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:37:0,108,1162 +20 10050828 . T C, . . BaseQRankSum=-2.704e+00;DP=123;ExcessHet=3.01;MQRankSum=0.892;RAW_MQandDP=440041,123;ReadPosRankSum=-1.400e-01 GT:AD:DP:GQ:PL:SB ./.:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 ./.:0,36,0:36:99:1155,108,0,1155,108,1155:0,0,18,18 +20 10050829 . T . . END=10050888 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:38:0,99,1182 +20 10050889 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:86:39:0,86,1145 +20 10050890 . A . . END=10050926 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:40:99:37:0,102,1112 +20 10050927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:97:37:0,97,1104 +20 10050928 . T . . END=10050950 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:37:0,104,1177 +20 10050951 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:82:42:0,82,1145 +20 10050952 . T . . END=10051015 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:38:0,99,1144 +20 10051016 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:96:38:0,96,1118 +20 10051017 . G . . END=10051022 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:37:0,102,1530 +20 10051023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:84:39:0,84,1075 +20 10051024 . G . . END=10051038 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:40:99:37:0,99,1485 +20 10051039 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:88:35:0,88,1025 +20 10051040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:38:0,99,1485 +20 10051041 . T . . END=10051042 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:93:37:0,93,1395 +20 10051043 . C . . END=10051044 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:99:38:0,99,1485 +20 10051045 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:96:39:0,96,1440 +20 10051046 . A . . END=10051055 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:35:0,99,1485 +20 10051056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:34:0,90,999 +20 10051057 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:86:35:0,86,986 +20 10051058 . G . . END=10051059 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:99:33:0,99,976 +20 10051060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:68:34:0,68,966 +20 10051061 . G . . END=10051062 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:70:35:0,70,972 +20 10051063 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:93:35:0,93,1395 +20 10051064 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:99:37:0,99,1485 +20 10051065 . T . . END=10051071 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:93:36:0,93,1395 +20 10051072 . A . . END=10051075 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:36:99:35:0,99,1485 +20 10051076 . G . . END=10051082 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:34:0,90,1350 +20 10051083 . T . . END=10051091 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:84:31:0,84,1260 +20 10051092 . G . . END=10051093 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:90:31:0,90,1350 +20 10051094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:29:87:29:0,87,906 +20 10051095 . C . . END=10051097 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:90:30:0,90,942 +20 10051098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:80:32:0,80,960 +20 10051099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:76:31:0,76,928 +20 10051100 . T . . END=10051106 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:93:32:0,93,1395 +20 10051107 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:84:33:0,84,1023 +20 10051108 . A . . END=10051111 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:99:34:0,99,1485 +20 10051112 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:85:34:0,85,1062 +20 10051113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:96:34:0,96,1440 +20 10051114 . A . . END=10051117 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:99:33:0,99,1023 +20 10051118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:87:34:0,87,1013 +20 10051119 . A . . END=10051121 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:99:34:0,99,1485 +20 10051122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:96:34:0,96,1440 +20 10051123 . G . . END=10051134 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:36:99:33:0,99,1042 +20 10051135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:98:37:0,98,1130 +20 10051136 . A . . END=10051157 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:99:38:0,100,1188 +20 10051158 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:92:42:0,92,1274 +20 10051159 . C . . END=10051198 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:37:0,100,1086 +20 10051199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:64:42:0,64,1173 +20 10051200 . A . . END=10051212 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:46:99:44:0,113,1298 +20 10051213 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:47:94:47:0,94,1284 +20 10051214 . G . . END=10051330 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:44:99:39:0,106,1095 +20 10051331 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:72:42:0,72,1086 +20 10051332 . A . . END=10051366 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:34:0,102,1062 +20 10051367 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:82:37:0,82,1137 +20 10051368 . T . . END=10051375 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:99:37:0,99,1118 +20 10051376 . A G, . . BaseQRankSum=-3.580e-01;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-1.189e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:40:0,99,1485,99,1485,1485 ./.:18,20,0:38:99:.:514,0,430,567,490,1057:9,9,7,13 +20 10051377 . C . . END=10051378 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:38:0,102,1530 +20 10051379 . A . . END=10051392 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:93:32:0,93,1395 +20 10051393 . T . . END=10051394 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:87:33:0,87,930 +20 10051395 . C . . END=10051401 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:93:31:0,93,972 +20 10051402 . T . . END=10051413 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:81:30:0,81,1215 +20 10051414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:78:31:0,78,1170 +20 10051415 . G . . END=10051418 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:84:32:0,84,1260 +20 10051419 . C . . END=10051420 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:33:0,90,1350 +20 10051421 . G . . END=10051432 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:87:30:0,87,1305 +20 10051433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:90:30:0,90,968 +20 10051434 . C . . END=10051438 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:81:30:0,81,1215 +20 10051439 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:78:30:0,78,887 +20 10051440 . C . . END=10051442 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:81:30:0,81,1215 +20 10051443 . T . . END=10051445 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:90:32:0,90,1350 +20 10051446 . C . . END=10051447 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:81:31:0,81,1215 +20 10051448 . T C, . . BaseQRankSum=-5.010e-01;DP=101;ExcessHet=3.01;MQRankSum=-1.404e+00;RAW_MQandDP=358610,101;ReadPosRankSum=-7.050e-01 GT:AD:DP:GQ:PL:SB ./.:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 ./.:0,31,0:31:93:990,93,0,990,93,990:0,0,19,12 +20 10051449 . T . . END=10051452 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:81:31:0,81,1215 +20 10051453 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:79:32:0,79,949 +20 10051454 . C . . END=10051459 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:84:28:0,84,879 +20 10051460 . T . . END=10051463 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:29:76:29:0,76,858 +20 10051464 . C . . END=10051465 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:81:30:0,81,1215 +20 10051466 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:78:31:0,78,1170 +20 10051467 . A . . END=10051477 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:80:30:0,80,956 +20 10051478 . G . . END=10051479 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:90:32:0,90,1350 +20 10051480 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:30:33:0,30,880 +20 10051481 . C . . END=10051483 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:34:90:33:0,90,1350 +20 10051484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:74:32:0,74,965 +20 10051485 . T . . END=10051486 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:93:32:0,93,1395 +20 10051487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:85:32:0,85,986 +20 10051488 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:79:32:0,79,959 +20 10051489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:81:32:0,81,980 +20 10051490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:93:32:0,93,1395 +20 10051491 . A . . END=10051492 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:87:31:0,87,1305 +20 10051493 . A . . END=10051505 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:90:31:0,90,1047 +20 10051506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:72:32:0,72,956 +20 10051507 . G . . END=10051510 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:90:31:0,90,951 +20 10051511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:85:32:0,85,979 +20 10051512 . G . . END=10051518 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:93:31:0,93,970 +20 10051519 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:99:33:0,99,1016 +20 10051520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:88:33:0,88,1010 +20 10051521 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:96:32:0,96,940 +20 10051522 . A . . END=10051594 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:43:99:34:0,100,1078 +20 10051595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:88:44:0,88,1279 +20 10051596 . C . . END=10051694 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:46:99:44:0,120,1307 +20 10051695 . G A, . . BaseQRankSum=3.95;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=165600,46;ReadPosRankSum=-2.980e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:82:99:55:0,114,1800,114,1800,1800 ./.:21,25,0:46:99:.:667,0,425,729,500,1229:8,13,14,11 +20 10051696 . T . . END=10051744 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:42:99:38:0,105,1299 +20 10051745 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:90:35:0,90,1018 +20 10051746 . C . . END=10051750 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,102,1530 +20 10051751 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:94:36:0,94,1035 +20 10051752 . A . . END=10051760 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:99:37:0,99,1485 +20 10051761 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1395 +20 10051762 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:89:36:0,89,949 +20 10051763 . C . . END=10051765 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:93:33:0,93,1395 +20 10051766 . A . . END=10051982 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:47:99:36:0,99,1156 +20 10051983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:75:37:0,75,1079 +20 10051984 . T . . END=10052271 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:43:99:36:0,100,1147 +20 10052272 . C . . END=10052275 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:96:37:0,96,1440 +20 10052276 . T . . END=10052277 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:99:37:0,99,1485 +20 10052278 . A . . END=10052283 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1395 +20 10052284 . A . . END=10052434 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:42:99:35:0,99,1147 +20 10052435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:41:98:41:0,98,1177 +20 10052436 . C . . END=10052449 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:41:99:37:0,99,1209 +20 10052450 . A . . END=10052454 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:93:35:0,93,1076 +20 10052455 . A . . END=10052456 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:87:35:0,87,1077 +20 10052457 . C . . END=10052460 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:90:35:0,90,1350 +20 10052461 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:84:36:0,84,1064 +20 10052462 . A . . END=10052464 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:90:36:0,90,1350 +20 10052465 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:89:35:0,89,1043 +20 10052466 . T . . END=10052475 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:96:33:0,96,1440 +20 10052476 . A . . END=10052491 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:99:34:0,102,1053 +20 10052492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1074 +20 10052493 . T . . END=10052512 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:99:35:0,99,1099 +20 10052513 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:91:37:0,91,1091 +20 10052514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:79:37:0,79,1091 +20 10052515 . T . . END=10052522 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,108,1620 +20 10052523 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:98:39:0,98,1218 +20 10052524 . T . . END=10052532 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,101,1131 +20 10052533 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:97:39:0,97,1192 +20 10052534 . A . . END=10052547 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:38:0,105,1214 +20 10052548 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:98:40:0,98,1211 +20 10052549 . T . . END=10052551 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:99:35:0,102,1530 +20 10052552 . C . . END=10052553 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:95:37:0,95,1109 +20 10052554 . T . . END=10052571 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:38:0,99,1244 +20 10052572 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:86:40:0,86,1179 +20 10052573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:70:39:0,70,1057 +20 10052574 . T . . END=10052624 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:39:0,102,1151 +20 10052625 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:45:75:45:0,75,1200 +20 10052626 . A . . END=10052678 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:38:0,101,1173 +20 10052679 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:87:40:0,87,1154 +20 10052680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:40:0,117,1755 +20 10052681 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:89:40:0,89,1221 +20 10052682 . A . . END=10052687 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:39:0,102,1246 +20 10052688 . C A, . . BaseQRankSum=0.180;DP=116;ExcessHet=3.01;MQRankSum=0.870;RAW_MQandDP=274969,77;ReadPosRankSum=1.44 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,32,0:77:99:.:1091,0,1645,1226,1741,2967:27,18,16,16 ./.:.:44:99:39:0,102,1246,102,1246,1246 +20 10052689 . A . . END=10052714 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:39:0,102,1246 +20 10052715 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:81:39:0,81,1106 +20 10052716 . T . . END=10052717 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,111,1665 +20 10052718 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:36:0,90,1022 +20 10052719 . T . . END=10052729 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:35:0,99,1485 +20 10052730 . T . . END=10052742 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10052743 . C . . END=10052746 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:85:32:0,85,1000 +20 10052747 . G . . END=10052748 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:32:0,90,1350 +20 10052749 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:55:31:0,55,818 +20 10052750 . G . . END=10052757 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:31:0,81,957 +20 10052758 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:65:30:0,65,866 +20 10052759 . A . . END=10052768 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:80:29:0,80,969 +20 10052769 . A . . END=10052776 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:32:0,90,961 +20 10052777 . C . . END=10052780 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052781 . T . . END=10052785 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052786 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:82:34:0,82,1065 +20 10052787 . A . . END=10052790 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10052791 . T . . END=10052792 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:33:0,84,1025 +20 10052793 . G . . END=10052794 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:31:0,90,1350 +20 10052795 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:83:33:0,83,967 +20 10052796 . T . . END=10052801 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:32:0,93,1395 +20 10052802 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:87:29:0,87,922 +20 10052803 . A . . END=10052807 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:93:32:0,93,1395 +20 10052808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:34:0,84,1008 +20 10052809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,984 +20 10052811 . A . . END=10052814 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1036 +20 10052815 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:54:34:0,54,983 +20 10052816 . A . . END=10052821 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,102,1120 +20 10052822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:90:38:0,90,1163 +20 10052823 . T . . END=10052826 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,108,1620 +20 10052827 . T . . END=10052830 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:38:0,96,1440 +20 10052831 . A . . END=10052843 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:36:0,102,1117 +20 10052844 . A . . END=10052846 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:37:0,94,1079 +20 10052847 . A . . END=10052850 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:35:0,102,1530 +20 10052851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1128 +20 10052852 . G . . END=10052857 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,99,1485 +20 10052858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:37:0,90,1126 +20 10052859 . A . . END=10052874 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1011 +20 10052875 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:82:35:0,82,1003 +20 10052876 . A . . END=10052879 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,983 +20 10052880 . A . . END=10052881 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,973 +20 10052883 . A . . END=10052884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:83:34:0,83,993 +20 10052886 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,944 +20 10052887 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:82:33:0,82,959 +20 10052888 . T . . END=10052889 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1006 +20 10052890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:98:33:0,98,975 +20 10052891 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1027 +20 10052892 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1000 +20 10052893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1021 +20 10052894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:72:35:0,72,976 +20 10052895 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:93:35:0,93,1050 +20 10052896 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,108,1070 +20 10052897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:36:0,90,1044 +20 10052898 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,105,1575 +20 10052899 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:36:0,93,1041 +20 10052900 . A . . END=10052904 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1079 +20 10052905 . T . . END=10052908 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:36:0,96,1440 +20 10052909 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,99,1485 +20 10052910 . G . . END=10052914 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1395 +20 10052915 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10052916 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:92:36:0,92,1068 +20 10052917 . C . . END=10052918 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10052919 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1119 +20 10052920 . A . . END=10052922 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052923 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:83:33:0,83,996 +20 10052924 . C . . END=10052926 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052927 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1035 +20 10052928 . C . . END=10052929 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052930 . T . . END=10052931 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:81:33:0,81,996 +20 10052932 . A . . END=10052933 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:34:0,96,1440 +20 10052934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1024 +20 10052935 . T . . END=10052937 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:33:0,90,1052 +20 10052938 . C . . END=10052940 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:33:0,99,1056 +20 10052941 . C . . END=10052943 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:34:0,96,1440 +20 10052944 . T . . END=10052947 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1485 +20 10052948 . A . . END=10052955 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10052956 . A . . END=10052959 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:81:31:0,81,1215 +20 10052960 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:65:31:0,65,968 +20 10052961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10052962 . T . . END=10052963 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:29:0,78,1170 +20 10052964 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:31:0,81,1215 +20 10052965 . A . . END=10052991 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:27:75:25:0,75,807 +20 10052992 . A . . END=10052993 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:66:27:0,66,845 +20 10052994 . T . . END=10052995 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10052996 . G . . END=10053010 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:72:25:0,72,760 +20 10053011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:25:48:25:0,48,756 +20 10053012 . C . . END=10053020 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:26:72:24:0,72,750 +20 10053021 . A . . END=10053022 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:84:28:0,84,850 +20 10053023 . T G, . . BaseQRankSum=-1.451e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=-1.276e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:10,17,0:27:99:.:419,0,247,449,298,746:7,3,8,9 +20 10053024 . C . . END=10053025 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:84:29:0,84,1260 +20 10053026 . C . . END=10053029 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:90:31:0,90,1350 +20 10053030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,894 +20 10053031 . G . . END=10053039 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:30:0,90,908 +20 10053040 . C . . END=10053041 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:81:34:0,81,982 +20 10053042 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10053043 . C . . END=10053044 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,962 +20 10053045 . A . . END=10053049 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,1350 +20 10053050 . C . . END=10053051 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:32:0,87,887 +20 10053052 . T . . END=10053059 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:34:0,90,1350 +20 10053060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:77:35:0,77,1044 +20 10053061 . T . . END=10053063 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:34:0,96,1440 +20 10053064 . A . . END=10053082 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:33:0,99,1020 +20 10053083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:76:38:0,76,961 +20 10053084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1089 +20 10053085 . G . . END=10053086 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10053087 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1107 +20 10053088 . A . . END=10053089 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10053090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:38:0,94,1109 +20 10053091 . C . . END=10053093 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10053094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:71:34:0,71,1043 +20 10053095 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:88:36:0,88,1029 +20 10053096 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,981 +20 10053097 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,105,1056 +20 10053098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:86:36:0,86,1052 +20 10053099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,105,1071 +20 10053100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1071 +20 10053101 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:80:34:0,80,985 +20 10053102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:35:0,94,1013 +20 10053103 . C . . END=10053107 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,995 +20 10053108 . A . . END=10053110 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:34:0,94,1042 +20 10053111 . T . . END=10053113 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,100,1102 +20 10053114 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1112 +20 10053115 . A . . END=10053117 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:36:0,90,1086 +20 10053118 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:60:35:0,60,1023 +20 10053119 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:85:35:0,85,1098 +20 10053120 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:73:34:0,73,1027 +20 10053121 . C . . END=10053122 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1485 +20 10053123 . T . . END=10053124 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:84:36:0,84,1010 +20 10053125 . T . . END=10053126 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1041 +20 10053127 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,102,1530 +20 10053128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:70:35:0,70,1071 +20 10053129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10053130 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:72:35:0,72,1012 +20 10053131 . C . . END=10053132 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:34:0,90,1350 +20 10053133 . A . . END=10053134 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:84:36:0,84,1060 +20 10053135 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:37:0,96,1440 +20 10053136 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,99,1485 +20 10053137 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:86:38:0,86,1117 +20 10053138 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,105,1575 +20 10053139 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:78:36:0,78,1056 +20 10053140 . C . . END=10053141 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,102,1097 +20 10053142 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:62:38:0,62,1077 +20 10053143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:89:37:0,89,1106 +20 10053144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:92:38:0,92,1104 +20 10053145 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:37:0,81,1072 +20 10053146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,111,1665 +20 10053147 . T . . END=10053148 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:80:38:0,80,1111 +20 10053149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:95:39:0,95,1168 +20 10053150 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,102,1530 +20 10053151 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1136 +20 10053152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:92:38:0,92,1116 +20 10053153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:87:38:0,87,1119 +20 10053154 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:75:39:0,75,1062 +20 10053155 . A . . END=10053156 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:92:38:0,92,1109 +20 10053157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1112 +20 10053158 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:91:38:0,91,1141 +20 10053159 . A . . END=10053160 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:80:37:0,80,1085 +20 10053161 . A . . END=10053162 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1083 +20 10053163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:74:39:0,74,1116 +20 10053164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,102,1530 +20 10053165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:85:39:0,85,1087 +20 10053166 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:93:39:0,93,1109 +20 10053167 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:76:37:0,76,1045 +20 10053168 . A . . END=10053171 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:93:36:0,93,1395 +20 10053172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:83:36:0,83,1035 +20 10053173 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:75:37:0,75,1016 +20 10053174 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:80:36:0,80,1054 +20 10053175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:79:37:0,79,1081 +20 10053176 . T . . END=10053183 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1017 +20 10053184 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:62:32:0,62,904 +20 10053185 . G . . END=10053190 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:82:30:0,82,909 +20 10053191 . A . . END=10053201 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,961 +20 10053202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053203 . T . . END=10053206 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10053207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:75:34:0,75,975 +20 10053208 . T . . END=10053213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10053214 . C . . END=10053216 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,102,1058 +20 10053217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:86:35:0,86,997 +20 10053218 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,984 +20 10053219 . T . . END=10053220 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053221 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053222 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:82:34:0,82,1003 +20 10053223 . A . . END=10053226 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1395 +20 10053227 . C . . END=10053229 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10053230 . T . . END=10053233 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053234 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1022 +20 10053236 . G . . END=10053243 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1009 +20 10053244 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,983 +20 10053245 . A . . END=10053251 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,969 +20 10053252 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053253 . T . . END=10053261 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10053262 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053263 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:89:36:0,89,1072 +20 10053264 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053265 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:95:36:0,95,1098 +20 10053266 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10053267 . G A, . . BaseQRankSum=0.321;ClippingRankSum=0.00;DP=72;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.409 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:19,16,0:35:99:.:383,0,480,440,527,968:10,9,9,7 +20 10053268 . T . . END=10053275 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1077 +20 10053276 . A . . END=10053277 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10053278 . A . . END=10053280 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:87:33:0,87,1305 +20 10053281 . A . . END=10053288 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1019 +20 10053289 . C . . END=10053349 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:33:0,99,1008 +20 10053350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:92:43:0,92,1223 +20 10053351 . C . . END=10053366 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:41:0,117,1755 +20 10053367 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:70:45:0,70,1249 +20 10053368 . A . . END=10053394 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:45:0,120,1800 +20 10053395 . G C, . . DP=95;ExcessHet=3.01;RAW_MQandDP=212400,59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:0,57,0:57:99:.:1569,169,0,1569,169,1569:0,0,30,27 +20 10053396 . G . . END=10053463 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:58:99:49:0,120,1800 +20 10053464 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:94:50:0,94,1435 +20 10053465 . A . . END=10053708 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:99:39:0,103,1226 +20 10053709 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:91:47:0,91,1335 +20 10053710 . C . . END=10053890 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:52:99:45:0,110,1450 +20 10053891 . C G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=169200,47 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:0,47,0:47:99:.:1433,140,0,1433,140,1433:0,0,27,20 +20 10053892 . T . . END=10054050 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:99:42:0,99,1313 +20 10054051 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:56:50:0,56,1394 +20 10054052 . A . . END=10054116 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:40:0,111,1239 +20 10054117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:50:45:0,50,1211 +20 10054118 . A . . END=10054156 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:37:0,99,1278 +20 10054157 . T . . END=10054158 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1440 +20 10054159 . T . . END=10054181 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:34:0,99,1051 +20 10054182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1027 +20 10054183 . T . . END=10054185 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1036 +20 10054186 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1034 +20 10054187 . G . . END=10054200 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1077 +20 10054201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:89:35:0,89,1087 +20 10054202 . A . . END=10054204 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10054205 . T . . END=10054206 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:96:36:0,96,1164 +20 10054207 . G . . END=10054210 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1485 +20 10054211 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1010 +20 10054212 . G . . END=10054213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1042 +20 10054214 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:91:36:0,91,1111 +20 10054215 . C . . END=10054219 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,100,1123 +20 10054220 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1108 +20 10054221 . G . . END=10054222 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10054223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1123 +20 10054224 . T . . END=10054225 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10054226 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:37:0,96,1440 +20 10054227 . A . . END=10054229 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,99,1485 +20 10054230 . T . . END=10054233 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:93:38:0,93,1395 +20 10054234 . T . . END=10054238 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,99,1485 +20 10054239 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:38:0,96,1440 +20 10054240 . G . . END=10054241 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10054242 . T . . END=10054247 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:36:0,93,1072 +20 10054248 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:87:36:0,87,1057 +20 10054249 . A . . END=10054256 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:31:0,90,1350 +20 10054257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:78:32:0,78,955 +20 10054258 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:90:30:0,90,915 +20 10054259 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,886 +20 10054260 . T . . END=10054272 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:29:0,81,1215 +20 10054273 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,935 +20 10054274 . T . . END=10054280 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:81:30:0,81,1215 +20 10054281 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:65:29:0,65,881 +20 10054282 . T . . END=10054283 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:28:0,81,1215 +20 10054284 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:90:31:0,90,1350 +20 10054285 . T . . END=10054288 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:87:29:0,87,886 +20 10054289 . C . . END=10054292 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10054293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:77:31:0,77,929 +20 10054294 . T . . END=10054297 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:87:31:0,87,1305 +20 10054298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:65:31:0,65,936 +20 10054299 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:84:32:0,84,961 +20 10054300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10054301 . C . . END=10054303 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:80:32:0,80,983 +20 10054304 . A . . END=10054312 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10054313 . C . . END=10054470 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:33:0,99,1039 +20 10054471 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:91:43:0,91,1200 +20 10054472 . T . . END=10054503 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:37:0,100,1182 +20 10054504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:83:38:0,83,1156 +20 10054505 . A . . END=10054510 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:38:0,103,1188 +20 10054511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:90:41:0,90,1239 +20 10054512 . A . . END=10054552 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:34:0,99,973 +20 10054553 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:94:40:0,94,1236 +20 10054554 . T . . END=10054561 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:40:0,101,1254 +20 10054562 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:80:39:0,80,1101 +20 10054563 . T . . END=10054574 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:35:0,100,1023 +20 10054575 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:35:0,90,948 +20 10054576 . A . . END=10054578 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,108,1620 +20 10054579 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1126 +20 10054580 . T . . END=10054585 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1175 +20 10054586 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:94:39:0,94,1239 +20 10054587 . A . . END=10054597 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:40:0,100,1240 +20 10054598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:92:41:0,92,1227 +20 10054599 . T . . END=10054603 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:41:0,101,1286 +20 10054604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:94:42:0,94,1232 +20 10054605 . T . . END=10054615 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:41:0,117,1303 +20 10054616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:94:44:0,94,1232 +20 10054617 . T . . END=10054697 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:43:0,99,1238 +20 10054698 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:83:48:0,83,1358 +20 10054699 . T . . END=10055045 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:42:0,99,1279 +20 10055046 . A G, . . BaseQRankSum=-5.250e-01;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=1.50 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:18,21,0:39:99:.:530,0,438,584,501,1085:11,7,8,13 +20 10055047 . C . . END=10055130 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:40:0,100,1238 +20 10055131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:81:44:0,81,1224 +20 10055132 . A . . END=10055216 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:39:0,102,1149 +20 10055217 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:87:44:0,87,1313 +20 10055218 . T . . END=10055685 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:52:99:41:0,102,1271 +20 10055686 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:90:46:0,90,1339 +20 10055687 . C . . END=10055803 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:37:0,99,1170 +20 10055804 . A . . END=10055808 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:36:0,90,1350 +20 10055809 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:87:37:0,87,1305 +20 10055810 . A . . END=10055813 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:35:0,90,1350 +20 10055814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:87:34:0,87,1305 +20 10055815 . A . . END=10055816 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10055817 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:69:33:0,69,983 +20 10055818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:73:33:0,73,1019 +20 10055819 . A . . END=10055822 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:32:0,84,1260 +20 10055823 . G . . END=10055825 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,1170 +20 10055826 . A . . END=10055828 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:31:0,81,1215 +20 10055829 . T C, . . BaseQRankSum=-2.257e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.424 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:17,15,0:32:99:.:346,0,466,397,511,908:7,10,9,6 +20 10055830 . T . . END=10055839 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:34:0,90,1350 +20 10055840 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:73:35:0,73,1052 +20 10055841 . T . . END=10055843 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:35:0,90,1350 +20 10055844 . G . . END=10055848 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10055849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1158 +20 10055850 . G . . END=10055854 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10055855 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:89:38:0,89,1164 +20 10055856 . T . . END=10055860 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1073 +20 10055861 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:96:36:0,96,1100 +20 10055862 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,105,1575 +20 10055863 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:87:36:0,87,1094 +20 10055864 . A . . END=10055870 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1082 +20 10055871 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1116 +20 10055872 . C . . END=10055877 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,99,1144 +20 10055878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1124 +20 10055879 . A . . END=10055884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,111,1665 +20 10055885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:89:37:0,89,1172 +20 10055886 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,111,1665 +20 10055887 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1104 +20 10055888 . T . . END=10055889 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:39:0,114,1710 +20 10055890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:76:40:0,76,1165 +20 10055891 . C . . END=10055939 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:42:0,110,1331 +20 10055940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:85:45:0,85,1288 +20 10055941 . C . . END=10055963 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:99:44:0,114,1439 +20 10055964 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:90:46:0,90,1287 +20 10055965 . C . . END=10055979 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:41:0,101,1204 +20 10055980 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:90:44:0,90,1195 +20 10055981 . T . . END=10056003 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:38:0,101,1140 +20 10056004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:97:37:0,97,1064 +20 10056005 . A . . END=10056025 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:37:0,105,1234 +20 10056026 . C G, . . BaseQRankSum=1.78;ClippingRankSum=0.00;DP=74;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-7.530e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:18,19,0:37:99:.:464,0,405,518,461,980:5,13,10,9 +20 10056027 . G . . END=10056032 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:39:0,105,1575 +20 10056033 . G . . END=10056034 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:96:39:0,96,1440 +20 10056035 . A . . END=10056043 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:34:0,81,1215 +20 10056044 . A . . END=10056049 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:75:28:0,75,1125 +20 10056050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:69:28:0,69,847 +20 10056051 . A . . END=10056054 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:75:28:0,75,1125 +20 10056055 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:27:69:27:0,69,801 +20 10056056 . T . . END=10056062 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:75:27:0,75,1125 +20 10056063 . A . . END=10056064 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10056065 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:78:29:0,78,1170 +20 10056066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:81:30:0,81,1215 +20 10056067 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,1170 +20 10056068 . T . . END=10056071 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:32:0,81,1215 +20 10056072 . T . . END=10056073 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10056074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10056075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:34:0,93,1395 +20 10056076 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:86:35:0,86,1018 +20 10056077 . A . . END=10056097 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,943 +20 10056098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:67:32:0,67,913 +20 10056099 . C . . END=10056102 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,949 +20 10056103 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:83:32:0,83,927 +20 10056104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,986 +20 10056105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:88:35:0,88,1016 +20 10056106 . C . . END=10056107 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,102,1057 +20 10056108 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,927 +20 10056109 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,832 +20 10056110 . C . . END=10056111 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1099 +20 10056112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1022 +20 10056113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,117,1171 +20 10056114 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:89:39:0,89,1095 +20 10056115 . C . . END=10056124 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,102,1133 +20 10056125 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:83:39:0,83,1071 +20 10056126 . G . . END=10056130 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:36:0,102,1117 +20 10056131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1068 +20 10056132 . C . . END=10056133 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,105,1108 +20 10056134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1091 +20 10056135 . A . . END=10056139 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10056140 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1117 +20 10056141 . C . . END=10056149 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1530 +20 10056150 . A . . END=10056154 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:93:36:0,93,1112 +20 10056155 . A . . END=10056162 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:33:0,99,1043 +20 10056163 . A . . END=10056167 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10056168 . T . . END=10056172 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10056173 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1106 +20 10056174 . T . . END=10056192 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,102,1140 +20 10056193 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1190 +20 10056194 . G . . END=10056196 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,106,1167 +20 10056197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1164 +20 10056198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10056199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:88:38:0,88,1151 +20 10056200 . T . . END=10056201 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,108,1620 +20 10056202 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:88:39:0,88,1146 +20 10056203 . T . . END=10056207 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:38:0,111,1665 +20 10056208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1205 +20 10056209 . A . . END=10056210 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10056211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1217 +20 10056212 . T . . END=10056213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10056214 . A . . END=10056225 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:35:0,90,1051 +20 10056226 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10056227 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10056228 . A . . END=10056231 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:34:0,99,1485 +20 10056232 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:83:38:0,83,1119 +20 10056233 . A . . END=10056243 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,105,996 +20 10056244 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1083 +20 10056245 . G . . END=10056247 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10056248 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:84:39:0,84,1140 +20 10056249 . T . . END=10056264 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,108,1133 +20 10056265 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:97:40:0,97,1181 +20 10056266 . A . . END=10056330 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:38:0,108,1167 +20 10056331 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:98:41:0,98,1181 +20 10056332 . C . . END=10056362 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:38:0,103,1172 +20 10056363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:85:44:0,85,1243 +20 10056364 . C . . END=10056572 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:37:0,99,1191 +20 10056573 . G . . END=10056577 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:37:0,94,1146 +20 10056578 . T . . END=10056579 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10056580 . C . . END=10056581 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:37:0,96,1440 +20 10056582 . G . . END=10056583 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10056584 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:37:0,81,1159 +20 10056585 . A . . END=10056586 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,102,1530 +20 10056587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,971 +20 10056588 . T . . END=10056589 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,105,1575 +20 10056590 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1141 +20 10056591 . C . . END=10056592 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,108,1140 +20 10056593 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:92:36:0,92,1127 +20 10056594 . T . . END=10056606 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1101 +20 10056607 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,975 +20 10056608 . G . . END=10056612 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,99,1485 +20 10056613 . A . . END=10056615 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:34:0,96,1440 +20 10056616 . C . . END=10056628 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1018 +20 10056629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,1011 +20 10056630 . G . . END=10056634 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1009 +20 10056635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1036 +20 10056636 . A . . END=10056640 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1011 +20 10056641 . G . . END=10056645 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:31:0,91,957 +20 10056646 . T . . END=10056647 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1530 +20 10056648 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:93:37:0,93,1112 +20 10056649 . G . . END=10056711 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:37:0,99,1142 +20 10056712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:88:41:0,88,1173 +20 10056713 . T . . END=10056781 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:38:0,99,1150 +20 10056782 . A C, . . BaseQRankSum=-1.811e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=2.51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:74:99:36:.:.:0,99,1485,99,1485,1485 ./.:26,17,0:43:99:.:0|1:10056782_A_C:662,0,1496,740,1550,2290:16,10,7,10 +20 10056783 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:46:0,120,1800 +20 10056784 . A C, . . BaseQRankSum=-9.100e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=2.15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:74:99:36:.:.:0,99,1485,99,1485,1485 ./.:25,18,0:43:99:.:0|1:10056782_A_C:662,0,1496,740,1550,2290:15,10,8,10 +20 10056785 . A . . END=10056845 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:39:0,99,1146 +20 10056846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:86:40:0,86,1144 +20 10056847 . A . . END=10056852 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:39:0,111,1665 +20 10056853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:84:39:0,84,1136 +20 10056854 . A . . END=10056858 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:36:0,99,1122 +20 10056859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1081 +20 10056860 . G . . END=10056884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:36:0,102,1181 +20 10056885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:98:44:0,98,1322 +20 10056886 . T . . END=10056912 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:40:0,99,1219 +20 10056913 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:96:43:0,96,1292 +20 10056914 . A . . END=10057222 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:36:0,102,1288 +20 10057223 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:86:38:0,86,1070 +20 10057224 . A . . END=10057585 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:54:99:36:0,105,1038 +20 10057586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:38:0,96,1161 +20 10057587 . T . . END=10057675 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:36:0,99,1146 +20 10057676 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:97:42:0,97,1261 +20 10057677 . G . . END=10057918 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:99:40:0,101,1192 +20 10057919 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:90:41:0,90,1200 +20 10057920 . A . . END=10057921 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:40:0,105,1575 +20 10057922 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:94:42:0,94,1235 +20 10057923 . C . . END=10057933 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:36:0,102,1530 +20 10057934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:93:37:0,93,1065 +20 10057935 . G . . END=10057936 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10057937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:91:37:0,91,1102 +20 10057938 . C . . END=10057940 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,102,1530 +20 10057941 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:92:35:0,92,1048 +20 10057942 . A . . END=10057945 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,102,1035 +20 10057946 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:35:0,94,1051 +20 10057947 . C . . END=10057953 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10057954 . C . . END=10057955 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:35:0,90,1350 +20 10057956 . T . . END=10057957 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:81:34:0,81,1001 +20 10057958 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:76:33:0,76,1028 +20 10057959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10057960 . T . . END=10057974 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10057975 . G . . END=10057977 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10057978 . C . . END=10057993 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:33:0,90,1044 +20 10057994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:34:0,84,1031 +20 10057995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:34:0,93,1395 +20 10057996 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1017 +20 10057997 . A . . END=10057999 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10058000 . G . . END=10058003 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:31:0,84,1014 +20 10058004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:78:34:0,78,1170 +20 10058005 . T . . END=10058018 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:28:0,81,905 +20 10058019 . T . . END=10058021 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058022 . T C, . . BaseQRankSum=-2.346e+00;DP=99;ExcessHet=3.01;MQRankSum=0.466;RAW_MQandDP=237579,68;ReadPosRankSum=0.018 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,32,0:68:99:.:1004,0,1261,1112,1357,2469:16,20,13,19 ./.:.:32:90:31:0,90,1350,90,1350,1350 +20 10058023 . A . . END=10058028 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:67:34:0,67,982 +20 10058030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:71:33:0,71,991 +20 10058031 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10058032 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:77:32:0,77,909 +20 10058033 . C . . END=10058035 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10058036 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,1027 +20 10058037 . C . . END=10058039 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:96:32:0,96,1038 +20 10058040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:84:32:0,84,971 +20 10058041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:32:0,78,946 +20 10058042 . C . . END=10058049 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:32:0,90,977 +20 10058050 . T . . END=10058051 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:82:32:0,82,991 +20 10058052 . G . . END=10058053 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:95:32:0,95,965 +20 10058054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,102,1044 +20 10058055 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:77:34:0,77,961 +20 10058056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:92:35:0,92,1082 +20 10058057 . T . . END=10058060 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10058061 . G . . END=10058062 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1062 +20 10058063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,102,1530 +20 10058064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:78:38:0,78,977 +20 10058065 . A . . END=10058085 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,103,1086 +20 10058086 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:95:41:0,95,1134 +20 10058087 . A . . END=10058161 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:39:0,101,1175 +20 10058162 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:98:38:0,98,1129 +20 10058163 . G . . END=10058178 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,108,1127 +20 10058179 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:89:40:0,89,1088 +20 10058180 . C . . END=10058181 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,111,1665 +20 10058182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:86:39:0,86,1108 +20 10058183 . A . . END=10058184 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,111,1665 +20 10058185 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:96:39:0,96,1130 +20 10058186 . A . . END=10058189 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,111,1100 +20 10058190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:89:37:0,89,1023 +20 10058191 . G . . END=10058193 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,108,1072 +20 10058194 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:95:38:0,95,1021 +20 10058195 . G . . END=10058206 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:36:0,102,1530 +20 10058207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1068 +20 10058208 . A . . END=10058210 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,102,1530 +20 10058211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:81:38:0,81,978 +20 10058212 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1000 +20 10058213 . T . . END=10058236 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:38:0,102,1120 +20 10058237 . G . . END=10058239 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:37:0,96,1440 +20 10058240 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,99,1485 +20 10058241 . T . . END=10058243 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:36:0,96,1440 +20 10058244 . G . . END=10058245 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10058246 . G . . END=10058247 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:93:36:0,93,1395 +20 10058248 . G A, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=111600,31;ReadPosRankSum=-6.060e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:1,30,0:31:82:.:898,82,0,900,89,907:1,0,15,15 +20 10058249 . A . . END=10058251 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,1020 +20 10058252 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:86:33:0,86,880 +20 10058253 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10058254 . C . . END=10058257 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:87:31:0,87,1305 +20 10058258 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:70:29:0,70,882 +20 10058259 . C . . END=10058260 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058261 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:83:33:0,83,997 +20 10058262 . C . . END=10058263 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058264 . T . . END=10058265 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10058266 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:75:31:0,75,928 +20 10058267 . C . . END=10058271 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:30:0,87,1305 +20 10058272 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:78:31:0,78,968 +20 10058273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10058274 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:58:28:0,58,838 +20 10058275 . G . . END=10058286 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:29:0,81,1215 +20 10058287 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:76:29:0,76,881 +20 10058288 . C . . END=10058290 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:81:28:0,81,926 +20 10058291 . T . . END=10058295 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:90:30:0,90,929 +20 10058296 . T . . END=10058303 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:29:0,81,1215 +20 10058304 . T . . END=10058307 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:28:0,78,1170 +20 10058308 . C . . END=10058310 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:28:0,81,1215 +20 10058311 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:68:28:0,68,848 +20 10058312 . T . . END=10058314 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:81:27:0,81,828 +20 10058315 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:70:27:0,70,782 +20 10058316 . C . . END=10058328 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:27:0,81,781 +20 10058329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:55:29:0,55,866 +20 10058330 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:69:29:0,69,865 +20 10058331 . T . . END=10058335 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:29:0,81,1215 +20 10058336 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10058337 . C . . END=10058338 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:84:32:0,84,1260 +20 10058339 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:79:34:0,79,943 +20 10058340 . A . . END=10058343 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:83:32:0,83,918 +20 10058344 . T . . END=10058347 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:31:0,90,1350 +20 10058348 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10058349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10058350 . T . . END=10058351 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:86:33:0,86,955 +20 10058352 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:32:0,78,881 +20 10058353 . T . . END=10058355 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:84:31:0,84,1260 +20 10058356 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:78:33:0,78,1170 +20 10058357 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:32:0,81,939 +20 10058358 . T . . END=10058359 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:30:0,78,1170 +20 10058360 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:31:0,81,1215 +20 10058361 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:75:31:0,75,883 +20 10058362 . C . . END=10058364 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:87:33:0,87,1305 +20 10058365 . A . . END=10058367 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:90:30:0,90,859 +20 10058368 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10058369 . A . . END=10058373 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058374 . G . . END=10058375 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:76:30:0,76,871 +20 10058376 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10058377 . T . . END=10058383 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:30:0,87,1305 +20 10058384 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,1350 +20 10058385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:31:0,81,900 +20 10058386 . C . . END=10058387 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:32:0,93,1395 +20 10058388 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:84:28:0,84,847 +20 10058389 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10058390 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,984 +20 10058391 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:77:33:0,77,918 +20 10058392 . C . . END=10058397 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:33:0,99,1049 +20 10058398 . A . . END=10058400 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:34:0,96,1440 +20 10058401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:86:34:0,86,994 +20 10058402 . C . . END=10058406 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:36:0,99,1182 +20 10058407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:68:38:0,68,1096 +20 10058408 . A . . END=10058412 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10058413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:94:35:0,94,1056 +20 10058414 . T . . END=10058430 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1100 +20 10058431 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1044 +20 10058432 . A . . END=10058440 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,99,1153 +20 10058441 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:95:36:0,95,1110 +20 10058442 . T . . END=10058455 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,105,1149 +20 10058456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:37:0,95,1086 +20 10058457 . C . . END=10058562 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:37:0,105,1178 +20 10058563 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:94:40:0,94,1158 +20 10058564 . A . . END=10058571 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:41:0,117,1755 +20 10058572 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:83:39:0,83,1096 +20 10058573 . C . . END=10058644 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:99:40:0,99,1167 +20 10058645 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:92:41:0,92,1209 +20 10058646 . C . . END=10058679 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:39:0,100,1193 +20 10058680 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:88:41:0,88,1181 +20 10058681 . A . . END=10058740 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:42:0,112,1413 +20 10058741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:98:44:0,98,1318 +20 10058742 . A . . END=10058823 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:99:38:0,105,1214 +20 10058824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1062 +20 10058825 . T . . END=10058826 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:40:0,114,1710 +20 10058827 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:91:41:0,91,1239 +20 10058828 . G . . END=10058902 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:40:0,105,1231 +20 10058903 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:90:41:0,90,1222 +20 10058904 . A . . END=10058908 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:39:0,102,1138 +20 10058909 . T . . END=10058910 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:96:40:0,96,1440 +20 10058911 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:41:0,99,1485 +20 10058912 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:96:41:0,96,1440 +20 10058913 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:40:0,99,1485 +20 10058914 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:86:40:0,86,1174 +20 10058915 . A . . END=10058924 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:36:0,108,1195 +20 10058925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:84:37:0,84,1151 +20 10058926 . T . . END=10058931 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,108,1174 +20 10058932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:96:39:0,96,1195 +20 10058933 . T . . END=10058937 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:40:0,103,1241 +20 10058938 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:85:41:0,85,1175 +20 10058939 . C . . END=10058956 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:38:0,101,1225 +20 10058957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:97:38:0,97,1142 +20 10058958 . C . . END=10058974 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:39:0,103,1194 +20 10058975 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:90:39:0,90,1141 +20 10058976 . T . . END=10058980 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,99,1485 +20 10058981 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:85:38:0,85,1090 +20 10058982 . A . . END=10058987 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:33:0,93,1395 +20 10058988 . T . . END=10058990 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:82:31:0,82,971 +20 10058991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:74:34:0,74,962 +20 10058992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:34:0,84,1260 +20 10058993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:62:33:0,62,920 +20 10058994 . C . . END=10058995 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:31:0,78,1170 +20 10058996 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:67:32:0,67,925 +20 10058997 . A . . END=10059001 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:78:29:0,78,1170 +20 10059002 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059003 . G . . END=10059008 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:27:0,75,1125 +20 10059009 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:58:27:0,58,763 +20 10059010 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:59:30:0,59,811 +20 10059011 . A . . END=10059014 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:27:0,81,833 +20 10059015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:50:27:0,50,797 +20 10059016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:84:28:0,84,863 +20 10059017 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:72:28:0,72,834 +20 10059018 . C . . END=10059024 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:27:0,81,848 +20 10059025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10059026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:79:33:0,79,943 +20 10059027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:66:33:0,66,895 +20 10059028 . T . . END=10059029 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:33:0,96,1440 +20 10059030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:85:34:0,85,1010 +20 10059031 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:70:35:0,70,985 +20 10059032 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1395 +20 10059033 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:72:35:0,72,948 +20 10059034 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:85:38:0,85,1017 +20 10059035 . C . . END=10059040 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10059041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1053 +20 10059042 . C . . END=10059050 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,102,1068 +20 10059051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:79:37:0,79,965 +20 10059052 . G . . END=10059055 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,102,1031 +20 10059056 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1075 +20 10059057 . T . . END=10059065 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:35:0,99,1485 +20 10059066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1036 +20 10059067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:99:33:0,99,976 +20 10059068 . C . . END=10059076 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059077 . C . . END=10059078 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1305 +20 10059079 . T . . END=10059080 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059081 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1305 +20 10059082 . C . . END=10059087 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:32:0,90,1350 +20 10059088 . C . . END=10059089 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10059090 . C . . END=10059092 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:32:0,81,973 +20 10059094 . A . . END=10059095 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:32:0,93,1395 +20 10059096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:77:32:0,77,950 +20 10059097 . G . . END=10059099 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:93:31:0,93,981 +20 10059100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:75:31:0,75,916 +20 10059101 . T . . END=10059105 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,975 +20 10059106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:84:32:0,84,941 +20 10059107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059108 . A . . END=10059110 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059111 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1096 +20 10059112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10059113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,1016 +20 10059114 . T . . END=10059116 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:96:33:0,96,1440 +20 10059117 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:85:33:0,85,1021 +20 10059118 . G . . END=10059121 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,1395 +20 10059122 . T . . END=10059134 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,102,1530 +20 10059135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:97:37:0,97,1131 +20 10059136 . T . . END=10059142 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:36:0,102,1530 +20 10059143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1107 +20 10059144 . C . . END=10059147 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:34:0,102,1105 +20 10059148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:94:36:0,94,1118 +20 10059149 . A . . END=10059151 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059152 . A . . END=10059158 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:34:0,96,1440 +20 10059159 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:36:0,102,1530 +20 10059160 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:36:0,93,1079 +20 10059161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059162 . T . . END=10059163 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:34:0,96,1440 +20 10059164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059165 . G . . END=10059170 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:91:34:0,91,1055 +20 10059171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059172 . T . . END=10059174 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,1004 +20 10059175 . G . . END=10059176 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:84:32:0,84,1260 +20 10059177 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:90:35:0,90,1350 +20 10059178 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1305 +20 10059179 . T . . END=10059185 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:32:0,90,1350 +20 10059186 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:79:32:0,79,940 +20 10059187 . C . . END=10059188 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10059189 . T . . END=10059190 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:81:32:0,81,908 +20 10059191 . G . . END=10059196 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,952 +20 10059197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:83:32:0,83,978 +20 10059198 . C . . END=10059200 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1046 +20 10059201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:83:33:0,83,1003 +20 10059202 . T . . END=10059212 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,974 +20 10059213 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:32:0,80,984 +20 10059214 . T . . END=10059216 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:33:0,96,1440 +20 10059217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:86:34:0,86,1020 +20 10059218 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:34:0,96,1440 +20 10059219 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:85:34:0,85,991 +20 10059220 . C . . END=10059226 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059227 . A . . END=10059236 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:31:0,80,957 +20 10059237 . A . . END=10059246 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:30:0,90,872 +20 10059247 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10059248 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10059249 . T . . END=10059258 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:31:0,80,936 +20 10059259 . G . . END=10059264 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:72:30:0,72,855 +20 10059265 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:57:30:0,57,817 +20 10059266 . C . . END=10059268 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:72:31:0,72,1080 +20 10059269 . A . . END=10059271 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:69:26:0,69,1035 +20 10059272 . C . . END=10059273 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:72:27:0,72,1080 +20 10059274 . G . . END=10059275 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:63:27:0,63,786 +20 10059276 . A . . END=10059281 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:72:26:0,72,1080 +20 10059282 . C . . END=10059286 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:81:27:0,81,852 +20 10059287 . C . . END=10059296 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:78:27:0,78,1170 +20 10059297 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:81:27:0,81,877 +20 10059298 . C . . END=10059299 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:78:27:0,78,1170 +20 10059300 . T . . END=10059306 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:82:29:0,82,907 +20 10059307 . C . . END=10059317 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:90:30:0,90,917 +20 10059318 . G . . END=10059333 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059334 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:74:30:0,74,894 +20 10059335 . C . . END=10059339 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:28:0,81,1215 +20 10059340 . C . . END=10059345 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:71:28:0,71,832 +20 10059346 . T . . END=10059348 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059349 . G . . END=10059353 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:28:0,75,1125 +20 10059354 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059355 . G . . END=10059365 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:75:26:0,75,819 +20 10059366 . C . . END=10059376 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:27:0,81,827 +20 10059377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,1350 +20 10059378 . A . . END=10059379 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059380 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059381 . C . . END=10059387 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059388 . G . . END=10059395 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:89:34:0,89,1051 +20 10059397 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10059398 . A . . END=10059400 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:96:33:0,96,1440 +20 10059401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1030 +20 10059402 . G . . END=10059412 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:34:0,93,1048 +20 10059413 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:88:35:0,88,1061 +20 10059414 . T . . END=10059428 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:30:0,90,933 +20 10059429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:83:34:0,83,926 +20 10059430 . C . . END=10059435 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,102,1051 +20 10059436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1079 +20 10059437 . C . . END=10059442 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:36:0,99,1075 +20 10059443 . T . . END=10059449 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:35:0,96,1440 +20 10059450 . G . . END=10059454 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1071 +20 10059455 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:96:32:0,96,945 +20 10059456 . C . . END=10059461 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:36:0,105,998 +20 10059462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:91:36:0,91,1086 +20 10059463 . G . . END=10059477 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:35:0,105,1076 +20 10059478 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:96:37:0,96,1071 +20 10059479 . T . . END=10059484 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,111,1134 +20 10059485 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:80:38:0,80,1050 +20 10059486 . T . . END=10059490 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:36:0,99,1110 +20 10059491 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1054 +20 10059492 . G . . END=10059497 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,103,1113 +20 10059498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:91:40:0,91,1157 +20 10059499 . A . . END=10059507 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:37:0,109,1135 +20 10059508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:93:40:0,93,1167 +20 10059509 . A . . END=10059542 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:35:0,99,1133 +20 10059543 . A . . END=10059557 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:90:32:0,90,1350 +20 10059558 . G . . END=10059560 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10059561 . G . . END=10059563 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,985 +20 10059564 . G . . END=10059568 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,102,1070 +20 10059569 . C . . END=10059573 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,1032 +20 10059574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:34:0,84,976 +20 10059575 . C . . END=10059582 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059583 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,102,1530 +20 10059584 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:97:36:0,97,1098 +20 10059585 . C . . END=10059603 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:34:0,99,1043 +20 10059604 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:74:36:0,74,1023 +20 10059605 . C . . END=10059644 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:36:0,99,1135 +20 10059645 . T . . END=10059646 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1440 +20 10059647 . C . . END=10059652 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059653 . G . . END=10059655 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:33:0,96,1440 +20 10059656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,1012 +20 10059657 . G . . END=10059672 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:31:0,93,1010 +20 10059673 . T . . END=10059693 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:29:0,81,908 +20 10059694 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:30:0,78,931 +20 10059695 . G . . END=10059696 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:30:0,87,1305 +20 10059697 . A . . END=10059700 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10059701 . T . . END=10059708 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,1350 +20 10059710 . G . . END=10059712 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059713 . C . . END=10059724 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:32:0,90,1034 +20 10059725 . G . . END=10059736 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:81:32:0,81,1215 +20 10059737 . G . . END=10059739 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:32:0,90,1350 +20 10059740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:76:32:0,76,992 +20 10059742 . T . . END=10059745 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10059746 . A . . END=10059748 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:31:0,81,1215 +20 10059749 . C . . END=10059754 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:75:30:0,75,1125 +20 10059755 . G . . END=10059756 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:31:0,81,1215 +20 10059757 . T . . END=10059774 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:25:0,75,810 +20 10059775 . T . . END=10059776 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:62:27:0,62,810 +20 10059777 . G . . END=10059778 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:27:0,75,1125 +20 10059779 . G . . END=10059782 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:28:0,81,1215 +20 10059783 . T . . END=10059786 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:32:0,93,1395 +20 10059787 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:80:33:0,80,967 +20 10059788 . A . . END=10059798 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:32:0,93,1012 +20 10059799 . C . . END=10059814 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:33:0,99,999 +20 10059815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1019 +20 10059816 . C . . END=10059843 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:35:0,103,1085 +20 10059844 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:95:40:0,95,1170 +20 10059845 . A . . END=10059853 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:38:0,102,1530 +20 10059854 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:85:38:0,85,1087 +20 10059855 . G . . END=10059856 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,99,1485 +20 10059857 . T . . END=10059859 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:37:0,95,1090 +20 10059860 . C . . END=10059876 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:34:0,99,1117 +20 10059877 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1048 +20 10059878 . C . . END=10059880 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10059881 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:35:0,96,1440 +20 10059882 . T . . END=10059899 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1131 +20 10059900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:88:39:0,88,1169 +20 10059901 . G . . END=10059917 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,102,1113 +20 10059918 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1182 +20 10059919 . A . . END=10060111 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:37:0,99,1097 +20 10060112 . A . . END=10060113 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:96:37:0,96,1440 +20 10060114 . C . . END=10060127 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:35:0,99,1485 +20 10060128 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:74:34:0,74,1045 +20 10060129 . T . . END=10060130 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:94:33:0,94,934 +20 10060131 . T . . END=10060137 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:33:0,99,1042 +20 10060138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:92:36:0,92,1060 +20 10060139 . A . . END=10060149 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,100,1043 +20 10060150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:81:40:0,81,1138 +20 10060151 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:92:38:0,92,1085 +20 10060152 . G . . END=10060222 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:36:0,99,1079 +20 10060223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:95:43:0,95,1264 +20 10060224 . A . . END=10060410 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:36:0,102,1272 +20 10060411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:79:36:0,79,1033 +20 10060412 . G . . END=10060422 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,102,1530 +20 10060423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:85:35:0,85,1083 +20 10060424 . A . . END=10060438 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:35:0,99,1485 +20 10060439 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:90:40:0,90,1185 +20 10060440 . C . . END=10060448 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:39:0,111,1665 +20 10060449 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:98:42:0,98,1236 +20 10060450 . A . . END=10060453 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:41:0,117,1755 +20 10060454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:72:40:0,72,1148 +20 10060455 . C . . END=10060461 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:37:0,111,1174 +20 10060462 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:90:41:0,90,1142 +20 10060463 . T . . END=10060468 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:39:0,105,1170 +20 10060469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:87:40:0,87,1136 +20 10060470 . T . . END=10060868 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:51:99:39:0,105,1177 +20 10060869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:49:91:49:0,91,1347 +20 10060870 . A . . END=10061081 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:55:99:44:0,117,1715 +20 10061082 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:95:45:0,95,1314 +20 10061083 . A . . END=10061095 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:99:40:0,99,1485 +20 10061096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:96:41:0,96,1440 +20 10061097 . C . . END=10061100 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:39:0,99,1485 +20 10061101 . G . . END=10061103 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:36:0,95,1085 +20 10061104 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:86:36:0,86,1125 +20 10061105 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10061106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:36:0,93,1070 +20 10061107 . A . . END=10061110 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,108,1133 +20 10061111 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:91:38:0,91,1130 +20 10061112 . A . . END=10061125 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:39:0,108,1161 +20 10061126 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:87:42:0,87,1193 +20 10061127 . C . . END=10061191 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:47:99:40:0,99,1289 +20 10061192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:47:97:47:0,97,1441 +20 10061193 . A . . END=10061246 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:38:0,105,1357 +20 10061247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:98:39:0,98,1160 +20 10061248 . C . . END=10061251 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,99,1485 +20 10061252 . A . . END=10061257 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:96:37:0,96,1440 +20 10061258 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:88:35:0,88,1059 +20 10061259 . T . . END=10061262 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:34:0,99,1485 +20 10061263 . A . . END=10061274 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:31:0,93,954 +20 10061275 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:76:33:0,76,946 +20 10061276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10061277 . A . . END=10061286 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:81:31:0,81,1215 +20 10061287 . A . . END=10061288 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:31:0,93,967 +20 10061289 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:30:0,78,907 +20 10061290 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:32:0,93,1395 +20 10061291 . C . . END=10061293 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10061294 . C . . END=10061297 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:92:35:0,92,1112 +20 10061298 . T . . END=10061300 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,99,1485 +20 10061301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:87:37:0,87,1103 +20 10061302 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:98:38:0,98,1140 +20 10061303 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,105,1575 +20 10061304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:89:38:0,89,1163 +20 10061305 . G . . END=10061306 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,102,1530 +20 10061307 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1090 +20 10061308 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:77:38:0,77,1077 +20 10061309 . A . . END=10061504 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:35:0,100,1071 +20 10061505 . T . . END=10061506 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:96:37:0,96,1440 +20 10061507 . T . . END=10061511 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:38:0,99,1485 +20 10061512 . G . . END=10061527 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:33:0,90,1350 +20 10061528 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:32:0,80,930 +20 10061529 . C . . END=10061534 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,1395 +20 10061535 . C . . END=10061545 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1056 +20 10061546 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:37:0,95,1119 +20 10061547 . C . . END=10061556 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,102,1530 +20 10061557 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:80:36:0,80,1106 +20 10061558 . C . . END=10061569 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10061570 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1440 +20 10061571 . A . . END=10061572 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10061573 . A . . END=10061578 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:35:0,93,1395 +20 10061579 . T C, . . BaseQRankSum=0.610;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.844 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:17,15,0:32:99:.:391,0,454,442,499,942:7,10,7,8 +20 10061580 . C . . END=10061590 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:31:0,90,1350 +20 10061591 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:75:32:0,75,1004 +20 10061592 . G . . END=10061594 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:31:0,93,945 +20 10061595 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:68:31:0,68,915 +20 10061596 . C . . END=10061599 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:31:0,90,1350 +20 10061600 . C . . END=10061603 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10061604 . C . . END=10061607 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:33:0,96,1440 +20 10061608 . G . . END=10061609 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:33:0,99,1029 +20 10061610 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:34:0,84,1011 +20 10061611 . C . . END=10061616 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:33:0,99,1078 +20 10061617 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:82:33:0,82,1016 +20 10061618 . A . . END=10061621 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1065 +20 10061622 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1061 +20 10061623 . G . . END=10061625 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:35:0,96,1440 +20 10061626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:38:0,99,1485 +20 10061627 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:80:37:0,80,1080 +20 10061628 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,99,1485 +20 10061629 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:92:36:0,92,1035 +20 10061630 . C . . END=10061631 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10061632 . C T, . . DP=80;ExcessHet=3.01;RAW_MQandDP=122400,34 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:0,34,0:34:99:.:1106,102,0,1106,102,1106:0,0,18,16 +20 10061633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:48:35:0,48,999 +20 10061634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:35:0,96,1440 +20 10061635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:87:35:0,87,1076 +20 10061636 . G . . END=10061637 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:34:0,93,1395 +20 10061638 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:86:34:0,86,1030 +20 10061639 . T . . END=10061644 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,1395 +20 10061645 . A . . END=10061659 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:30:0,81,992 +20 10061660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:30:0,78,898 +20 10061661 . A . . END=10061665 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:29:0,81,1215 +20 10061666 . C . . END=10061667 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:78:31:0,78,1170 +20 10061668 . T . . END=10061673 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:30:0,81,1215 +20 10061674 . A . . END=10061684 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:32:0,90,1350 +20 10061685 . A . . END=10061691 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:32:0,84,1260 +20 10061692 . C . . END=10061694 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10061695 . T . . END=10061699 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:84:31:0,84,997 +20 10061700 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10061701 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10061702 . C . . END=10061703 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10061704 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:87:33:0,87,1305 +20 10061705 . A . . END=10061710 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10061711 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:65:32:0,65,906 +20 10061712 . A . . END=10061722 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:30:0,90,942 +20 10061723 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,987 +20 10061724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:96:32:0,96,942 +20 10061725 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,982 +20 10061726 . G . . END=10061728 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10061729 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:91:34:0,91,1031 +20 10061730 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10061731 . G . . END=10061739 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:90:33:0,90,1047 +20 10061740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:82:31:0,82,920 +20 10061741 . G . . END=10061750 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,914 +20 10061751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:74:34:0,74,1007 +20 10061752 . A . . END=10061759 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10061760 . A . . END=10061767 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:34:0,93,1395 +20 10061768 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:69:35:0,69,1030 +20 10061769 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:80:34:0,80,1060 +20 10061770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:34:0,96,1440 +20 10061771 . A . . END=10061782 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1085 +20 10061783 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:94:35:0,94,1097 +20 10061784 . C . . END=10061793 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,100,1051 +20 10061794 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:98:38:0,98,1155 +20 10061795 . A . . END=10061801 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:38:0,106,1171 +20 10061802 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:95:43:0,95,1247 +20 10061803 . T . . END=10061838 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:39:0,104,1122 +20 10061839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:91:41:0,91,1187 +20 10061840 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:88:40:0,88,1124 +20 10061841 . G . . END=10061849 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,100,1174 +20 10061850 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1114 +20 10061851 . C . . END=10061976 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:36:0,100,1133 +20 10061977 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:94:41:0,94,1140 +20 10061978 . A . . END=10061981 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:43:0,117,1299 +20 10061982 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:95:43:0,95,1236 +20 10061983 . C . . END=10061992 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:41:0,106,1218 +20 10061993 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:88:41:0,88,1130 +20 10061994 . T . . END=10062011 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:42:0,116,1309 +20 10062012 . A . . END=10062013 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:96:41:0,96,1252 +20 10062014 . T . . END=10062022 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:40:0,114,1268 +20 10062023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:96:42:0,96,1280 +20 10062024 . C . . END=10062150 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:54:99:42:0,99,1255 +20 10062151 . A G, . . BaseQRankSum=-1.656e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=212400,59;ReadPosRankSum=-6.130e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:38,19,0:57:99:.:406,0,1012,520,1069,1588:18,20,9,10 +20 10062152 . T . . END=10062272 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:57:99:48:0,120,1800 +20 10062273 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:49:96:49:0,96,1419 +20 10062274 . C . . END=10062328 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:46:99:42:0,101,1340 +20 10062329 . T C, . . BaseQRankSum=-2.037e+00;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.337 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:15,25,0:40:99:.:620,0,364,665,438,1103:4,11,13,12 +20 10062330 . T . . END=10062400 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:46:99:39:0,107,1300 +20 10062401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:95:44:0,95,1333 +20 10062402 . C . . END=10062440 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:41:0,100,1278 +20 10062441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:97:43:0,97,1236 +20 10062442 . C . . END=10062530 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:47:99:41:0,104,1224 +20 10062531 . A G, . . BaseQRankSum=-2.520e-01;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=0.447 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:29,15,0:44:99:.:313,0,725,400,770,1169:12,17,4,11 +20 10062532 . T . . END=10062695 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:46:99:41:0,111,1297 +20 10062696 . T C, . . BaseQRankSum=0.953;ClippingRankSum=0.00;DP=93;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=-1.579e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:18,27,0:45:99:.:668,0,404,722,484,1205:11,7,16,11 +20 10062697 . C . . END=10062772 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:39:0,102,1482 +20 10062773 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:93:40:0,93,1197 +20 10062774 . C . . END=10062873 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:37:0,99,1206 +20 10062874 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:91:40:0,91,1199 +20 10062875 . T . . END=10062884 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,105,1575 +20 10062885 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:81:37:0,81,1060 +20 10062886 . A . . END=10062901 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,102,1043 +20 10062902 . A . . END=10062907 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:90:36:0,90,1350 +20 10062908 . G . . END=10062911 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:81:34:0,81,1215 +20 10062912 . A . . END=10062920 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:72:31:0,72,1080 +20 10062921 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:69:31:0,69,1035 +20 10062922 . T C, . . DP=77;ExcessHet=3.01;RAW_MQandDP=111600,31 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:0,31,0:31:92:.:917,92,0,917,92,917:0,0,18,13 +20 10062923 . G . . END=10062924 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:66:31:0,66,990 +20 10062925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:57:31:0,57,855 +20 10062926 . A . . END=10062928 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:51:31:0,51,765 +20 10062929 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:48:31:0,48,720 +20 10062930 . T . . END=10062931 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:45:30:0,45,675 +20 10062932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:36:30:0,36,540 +20 10062933 . C . . END=10062934 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:33:30:0,33,495 +20 10062935 . CAAA CAA,C,CA,CAAAA, . . BaseQRankSum=1.34;ClippingRankSum=0.00;DP=111;ExcessHet=3.01;MQRankSum=1.71;RAW_MQandDP=350168,111;ReadPosRankSum=-8.900e-02 GT:AD:DP:GQ:PL:SB ./.:5,4,2,2,10,0:23:16:130,115,505,219,628,1823,163,576,1171,1044,0,16,158,82,101,243,608,986,887,171,888:2,3,9,9 ./.:13,10,0,0,0,0:23:99:138,0,197,177,227,404,177,227,404,404,177,227,404,404,404,177,227,404,404,404,404:7,6,8,2 +20 10062936 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:5,4,0:23:16:130,115,505,243,608,888:2,3,9,9 ./.:13,10,0:23:99:138,0,197,177,227,404:7,6,8,2 +20 10062937 . A *, . . DP=120 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:5,4,0:23:16:.:130,115,505,243,608,888:2,3,9,9 ./.:.:41:0:41:0,0,653,0,653,653 +20 10062938 . A *, . . DP=119 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:5,4,0:23:16:.:130,115,505,243,608,888:2,3,9,9 ./.:.:41:99:40:0,99,1272,99,1272,1272 +20 10062939 . A . . END=10062954 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:41:99:40:0,99,1272 +20 10062955 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:40:89:40:0,89,1208 +20 10062956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:80:69:0,80,2241 ./.:40:99:37:0,100,1052 +20 10062957 . C . . END=10062991 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:37:0,100,1052 +20 10062992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:95:39:0,95,1170 +20 10062993 . G . . END=10062999 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:41:0,101,1176 +20 10063000 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:88:42:0,88,1199 +20 10063001 . T . . END=10063018 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:44:99:41:0,106,1217 +20 10063019 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:44:80:44:0,80,1244 +20 10063020 . C . . END=10063087 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:43:99:40:0,102,1234 +20 10063088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:89:39:0,89,1115 +20 10063089 . T . . END=10063090 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,99,1147 +20 10063091 . C . . END=10063101 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:34:0,90,1080 +20 10063102 . T . . END=10063104 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:31:0,87,1305 +20 10063105 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:79:33:0,79,979 +20 10063106 . A . . END=10063113 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:84:32:0,84,1260 +20 10063114 . T . . END=10063116 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,1021 +20 10063118 . C . . END=10063119 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,102,1530 +20 10063120 . C . . END=10063122 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:34:0,96,1440 +20 10063123 . T . . END=10063125 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1305 +20 10063126 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:75:36:0,75,1095 +20 10063127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:90:36:0,90,1350 +20 10063128 . A . . END=10063130 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:87:34:0,87,1305 +20 10063131 . C . . END=10063132 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:35:0,90,1350 +20 10063133 . G . . END=10063146 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:30:0,81,969 +20 10063147 . A . . END=10063163 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,982 +20 10063164 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:87:30:0,87,1305 +20 10063165 . G . . END=10063168 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10063169 . G . . END=10063170 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:33:0,99,1025 +20 10063171 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:85:34:0,85,1008 +20 10063172 . G . . END=10063174 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,102,1064 +20 10063175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:94:35:0,94,1073 +20 10063176 . C . . END=10063179 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,102,1061 +20 10063180 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:86:35:0,86,1076 +20 10063181 . A . . END=10063182 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,102,1104 +20 10063183 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:88:35:0,88,1078 +20 10063184 . A . . END=10063199 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:97:39:0,97,1126 +20 10063201 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:89:39:0,89,1177 +20 10063202 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1153 +20 10063203 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:38:0,99,1485 +20 10063204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:90:38:0,90,1088 +20 10063205 . A . . END=10063206 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:41:0,108,1620 +20 10063207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:87:40:0,87,1137 +20 10063208 . G . . END=10063269 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:38:0,99,1151 +20 10063270 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:98:39:0,98,1139 +20 10063271 . T . . END=10063299 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:33:0,99,1012 +20 10063300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,994 +20 10063301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:99:33:0,99,1033 +20 10063302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:96:32:0,96,1008 +20 10063303 . A . . END=10063309 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1065 +20 10063310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:96:33:0,96,1440 +20 10063311 . C . . END=10063351 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:35:0,99,1114 +20 10063352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:94:40:0,94,1230 +20 10063353 . T . . END=10063357 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:37:0,99,1485 +20 10063358 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:91:36:0,91,1062 +20 10063359 . T . . END=10063360 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,99,1485 +20 10063361 . G . . END=10063366 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:93:33:0,93,1395 +20 10063367 . T . . END=10063369 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:82:34:0,82,1010 +20 10063370 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:79:35:0,79,1011 +20 10063371 . T . . END=10063374 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:33:0,87,1305 +20 10063375 . A . . END=10063376 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:34:0,90,1062 +20 10063377 . T . . END=10063390 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:84:29:0,84,952 +20 10063391 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:54:29:0,54,870 +20 10063392 . T . . END=10063394 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:71:29:0,71,858 +20 10063395 . A . . END=10063397 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:84:29:0,84,1260 +20 10063398 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:70:30:0,70,858 +20 10063399 . G . . END=10063401 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:84:29:0,84,1260 +20 10063402 . T . . END=10063403 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10063404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:69:32:0,69,959 +20 10063405 . G . . END=10063407 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063408 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,982 +20 10063409 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:93:33:0,93,1395 +20 10063410 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:86:33:0,86,998 +20 10063411 . G . . END=10063417 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10063418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,918 +20 10063419 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063420 . C . . END=10063422 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:34:0,90,1350 +20 10063423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1063 +20 10063424 . C . . END=10063425 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1350 +20 10063426 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,1044 +20 10063427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:75:32:0,75,981 +20 10063428 . T . . END=10063432 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10063433 . T . . END=10063435 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,942 +20 10063436 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:78:32:0,78,995 +20 10063437 . T . . END=10063442 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:31:0,81,939 +20 10063443 . A . . END=10063444 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:78:30:0,78,1170 +20 10063445 . C . . END=10063452 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:31:0,80,957 +20 10063453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:57:35:0,57,993 +20 10063455 . T . . END=10063457 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:35:0,96,1440 +20 10063458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:78:35:0,78,1079 +20 10063459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10063460 . T . . END=10063463 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1072 +20 10063464 . A . . END=10063465 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10063466 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063467 . C . . END=10063471 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,99,1485 +20 10063472 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063473 . C . . END=10063480 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:35:0,99,1485 +20 10063481 . A . . END=10063494 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:30:0,90,981 +20 10063495 . A . . END=10063500 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:33:0,99,1048 +20 10063501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:96:32:0,96,1014 +20 10063502 . T . . END=10063513 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:34:0,99,1112 +20 10063514 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:96:41:0,96,1242 +20 10063515 . A . . END=10063525 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:40:0,100,1227 +20 10063526 . T . . END=10063527 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:93:42:0,93,1209 +20 10063528 . T . . END=10063549 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:41:0,110,1259 +20 10063550 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:91:40:0,91,1167 +20 10063551 . T . . END=10063584 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:38:0,108,1125 +20 10063585 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:79:42:0,79,1193 +20 10063586 . A . . END=10063666 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:36:0,99,1136 +20 10063667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:96:37:0,96,1086 +20 10063668 . C . . END=10063671 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:35:0,99,1485 +20 10063672 . T . . END=10063674 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:34:0,96,1440 +20 10063675 . C . . END=10063676 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:94:35:0,94,1066 +20 10063678 . G . . END=10063679 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,99,1485 +20 10063680 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:88:35:0,88,1061 +20 10063681 . C . . END=10063723 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:34:0,101,1079 +20 10063724 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:90:41:0,90,1244 +20 10063725 . A . . END=10063730 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:38:0,105,1575 +20 10063731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:96:38:0,96,1091 +20 10063732 . C . . END=10063737 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:34:0,99,1485 +20 10063738 . C . . END=10063741 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:93:35:0,93,1395 +20 10063742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:86:34:0,86,1032 +20 10063743 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063744 . G . . END=10063745 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063746 . A . . END=10063755 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1350 +20 10063756 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063757 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:76:33:0,76,955 +20 10063758 . T . . END=10063759 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:87:32:0,87,1305 +20 10063760 . G . . END=10063763 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10063764 . T . . END=10063768 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:30:0,81,1215 +20 10063769 . G . . END=10063789 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:27:72:25:0,72,773 +20 10063790 . C . . END=10063792 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,1215 +20 10063793 . C . . END=10063794 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:72:29:0,72,843 +20 10063795 . T . . END=10063797 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,1260 +20 10063798 . A . . END=10063800 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1057 +20 10063801 . A . . END=10063803 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063804 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:72:34:0,72,944 +20 10063805 . A . . END=10063808 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:33:0,99,1040 +20 10063809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:83:33:0,83,989 +20 10063810 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063811 . G . . END=10063823 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:34:0,99,1485 +20 10063824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:90:41:0,90,1243 +20 10063825 . T . . END=10064065 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:36:0,99,1122 +20 10064066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:96:38:0,96,1204 +20 10064067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:87:38:0,87,1119 +20 10064068 . A . . END=10064090 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:37:0,102,1179 +20 10064091 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:92:41:0,92,1137 +20 10064092 . A . . END=10064096 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:39:0,111,1665 +20 10064097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:95:40:0,95,1182 +20 10064098 . A . . END=10064100 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:40:0,114,1710 +20 10064101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:94:40:0,94,1226 +20 10064102 . T . . END=10064103 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,111,1167 +20 10064104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:90:39:0,90,1157 +20 10064105 . A . . END=10064106 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:39:0,109,1180 +20 10064107 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:87:40:0,87,1132 +20 10064108 . T . . END=10064114 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:43:99:40:0,101,1300 +20 10064115 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:88:42:0,88,1226 +20 10064116 . G . . END=10064135 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:37:0,102,1123 +20 10064136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:93:36:0,93,1042 +20 10064137 . C . . END=10064260 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:49:99:39:0,114,1203 +20 10064261 . T G, . . BaseQRankSum=0.993;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=172800,48;ReadPosRankSum=-1.260e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:22,23,0:45:99:.:572,0,499,638,568,1205:13,9,15,8 +20 10064262 . A . . END=10064305 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:52:99:49:0,120,1800 +20 10064306 . T A, . . DP=90;ExcessHet=3.01;RAW_MQandDP=172800,48 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:0,48,0:48:99:.:1511,144,0,1511,144,1511:0,0,27,21 +20 10064307 . A . . END=10064450 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:50:99:46:0,120,1800 +20 10064451 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:48:98:48:0,98,1355 +20 10064452 . T . . END=10064528 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:41:0,108,1310 +20 10064529 . A G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:0,39,0:39:99:.:1049,115,0,1049,115,1049:0,0,22,17 +20 10064530 . G . . END=10064770 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:50:99:38:0,99,1209 +20 10064771 . C . . END=10064781 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:33:0,90,1350 +20 10064782 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:87:32:0,87,1305 +20 10064783 . A . . END=10064800 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:32:0,90,911 +20 10064801 . C . . END=10064802 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:83:33:0,83,982 +20 10064803 . A . . END=10064806 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:93:32:0,93,1395 +20 10064807 . C . . END=10064810 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10064811 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:91:36:0,91,1106 +20 10064812 . G . . END=10065310 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:35:0,99,1101 +20 10065311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:84:39:0,84,1185 +20 10065312 . T . . END=10065323 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,99,1117 +20 10065324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:79:37:0,79,1074 +20 10065325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:84:38:0,84,1106 +20 10065326 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1136 +20 10065327 . A . . END=10065328 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:38:0,99,1485 +20 10065329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:92:39:0,92,1136 +20 10065330 . T . . END=10065332 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:37:0,99,1162 +20 10065333 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:93:38:0,93,1126 +20 10065334 . G . . END=10065336 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,101,1055 +20 10065337 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:86:37:0,86,1060 +20 10065338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:37:0,100,1130 +20 10065339 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:65:37:0,65,1000 +20 10065340 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:80:37:0,80,1001 +20 10065341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:65:37:0,65,1021 +20 10065343 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065344 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:77:37:0,77,1084 +20 10065345 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065346 . C . . END=10065349 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:73:33:0,73,956 +20 10065350 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1305 +20 10065351 . A . . END=10065353 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:74:33:0,74,993 +20 10065354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10065355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:68:33:0,68,984 +20 10065356 . A . . END=10065358 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:32:0,80,942 +20 10065359 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:69:32:0,69,952 +20 10065360 . C . . END=10065361 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:87:31:0,87,1305 +20 10065362 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:71:32:0,71,1002 +20 10065363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:32:0,80,960 +20 10065364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:72:34:0,72,1008 +20 10065365 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:47:33:0,47,920 +20 10065366 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:68:33:0,68,983 +20 10065367 . T . . END=10065372 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065373 . C . . END=10065382 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:84:32:0,84,1010 +20 10065383 . T G, . . BaseQRankSum=-4.436e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=122400,34;ReadPosRankSum=-7.660e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:15,16,0:31:99:.:342,0,417,387,464,851:9,6,9,7 +20 10065384 . T . . END=10065393 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:30:0,81,1215 +20 10065394 . C . . END=10065400 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1044 +20 10065401 . T . . END=10065433 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:35:0,99,1132 +20 10065434 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1060 +20 10065435 . A . . END=10065455 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:36:0,103,1081 +20 10065456 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:92:40:0,92,1228 +20 10065457 . G . . END=10065459 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:36:0,102,1530 +20 10065460 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:84:38:0,84,1132 +20 10065461 . C . . END=10065470 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:35:0,102,1530 +20 10065471 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:89:35:0,89,1063 +20 10065472 . T . . END=10065480 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,100,1151 +20 10065481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1132 +20 10065482 . T . . END=10065483 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,108,1153 +20 10065484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:92:36:0,92,1141 +20 10065485 . T . . END=10065486 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,108,1163 +20 10065487 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1147 +20 10065488 . T . . END=10065490 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,107,1099 +20 10065491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1126 +20 10065492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,105,1575 +20 10065493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:86:36:0,86,1078 +20 10065494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:32:35:0,32,925 +20 10065495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:81:36:0,81,1035 +20 10065496 . C . . END=10065502 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,99,1141 +20 10065503 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:90:37:0,90,1350 +20 10065504 . A . . END=10065505 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:88:36:0,88,1059 +20 10065506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:90:36:0,90,1350 +20 10065507 . T . . END=10065509 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:84:35:0,84,1260 +20 10065510 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:78:35:0,78,1016 +20 10065511 . G . . END=10065514 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:84:31:0,84,1260 +20 10065515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,893 +20 10065516 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065517 . T C, . . BaseQRankSum=0.690;ClippingRankSum=0.00;DP=73;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=111600,31;ReadPosRankSum=-1.828e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:70:99:42:.:.:0,105,1575,105,1575,1575 ./.:18,12,0:30:99:.:0|1:10065517_T_C:273,0,706,327,741,1068:9,9,4,8 +20 10065518 . T . . END=10065520 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065521 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,1010 +20 10065522 . T . . END=10065524 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10065525 . G A, . . BaseQRankSum=0.814;ClippingRankSum=0.00;DP=70;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=0.551 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:70:99:42:.:.:0,105,1575,105,1575,1575 ./.:10,17,0:27:99:.:1|0:10065517_T_C:481,0,391,514,442,956:4,6,9,8 +20 10065526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065527 . A . . END=10065533 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:31:0,81,1215 +20 10065534 . C . . END=10065543 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:72:29:0,72,1080 +20 10065544 . A . . END=10065547 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,1215 +20 10065548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:65:28:0,65,775 +20 10065549 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:54:28:0,54,805 +20 10065550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:69:29:0,69,855 +20 10065551 . T . . END=10065562 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:28:0,81,1215 +20 10065563 . T . . END=10065564 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:71:28:0,71,865 +20 10065565 . T . . END=10065572 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,875 +20 10065573 . A . . END=10065575 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:78:29:0,78,1170 +20 10065576 . C . . END=10065580 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:84:32:0,84,1260 +20 10065581 . A . . END=10065584 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10065585 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,882 +20 10065586 . C . . END=10065604 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:82:29:0,82,948 +20 10065605 . A . . END=10065614 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,951 +20 10065615 . G . . END=10065617 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:61:31:0,61,902 +20 10065618 . T . . END=10065619 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:93:32:0,93,1395 +20 10065620 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:46:32:0,46,875 +20 10065621 . T . . END=10065623 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,978 +20 10065624 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,937 +20 10065625 . A . . END=10065626 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,958 +20 10065627 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:82:31:0,82,926 +20 10065628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,972 +20 10065629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,898 +20 10065630 . A . . END=10065635 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,948 +20 10065636 . A . . END=10065637 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:99:33:0,99,1035 +20 10065638 . T . . END=10065644 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065645 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:85:34:0,85,993 +20 10065646 . C . . END=10065652 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10065653 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,901 +20 10065654 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065655 . A . . END=10065663 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:29:0,84,932 +20 10065664 . C . . END=10065669 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,990 +20 10065670 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:82:32:0,82,965 +20 10065671 . T . . END=10065676 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:93:32:0,93,1395 +20 10065677 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:70:32:0,70,930 +20 10065678 . T . . END=10065683 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:90:30:0,90,912 +20 10065684 . T . . END=10065686 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:29:0,81,1215 +20 10065687 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:78:31:0,78,1170 +20 10065688 . T . . END=10065694 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:30:0,81,1017 +20 10065695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:78:30:0,78,1170 +20 10065696 . G . . END=10065698 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:30:0,81,1215 +20 10065699 . T . . END=10065708 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:72:27:0,72,836 +20 10065709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:61:26:0,61,769 +20 10065710 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:72:26:0,72,1080 +20 10065711 . A . . END=10065715 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:64:24:0,64,792 +20 10065716 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:27:72:27:0,72,1080 +20 10065717 . C . . END=10065722 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:66:25:0,66,779 +20 10065723 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:46:26:0,46,780 +20 10065724 . C . . END=10065727 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:66:24:0,66,990 +20 10065728 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:26:24:0,26,583 +20 10065729 . T . . END=10065737 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:61:21:0,61,641 +20 10065738 . G . . END=10065739 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:55:24:0,55,665 +20 10065740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:66:25:0,66,990 +20 10065741 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:58:25:0,58,735 +20 10065742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:39:24:0,39,649 +20 10065743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:66:23:0,66,990 +20 10065744 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:52:23:0,52,661 +20 10065745 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:60:24:0,60,900 +20 10065746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:55:24:0,55,675 +20 10065747 . G . . END=10065748 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:57:23:0,57,855 +20 10065749 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:51:22:0,51,635 +20 10065750 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:60:22:0,60,900 +20 10065751 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:58:23:0,58,668 +20 10065752 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:60:23:0,60,900 +20 10065753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:58:23:0,58,687 +20 10065754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:49:22:0,49,624 +20 10065755 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:16:22:0,16,531 +20 10065756 . T . . END=10065758 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:60:20:0,60,637 +20 10065759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:52:23:0,52,677 +20 10065760 . T . . END=10065761 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:66:23:0,66,990 +20 10065762 . T . . END=10065772 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:70:24:0,70,754 +20 10065773 . A . . END=10065774 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:60:31:0,60,900 +20 10065775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:54:32:0,54,810 +20 10065776 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:76:49:0,76,1707 ./.:34:32:34:0,32,849 +20 10065777 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:94:48:0,94,1738 ./.:35:39:35:0,39,585 +20 10065778 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:48:0,120,1800 ./.:42:42:42:0,42,630 +20 10065779 . G GTT,GTTT, . . DP=78;ExcessHet=3.01;RAW_MQandDP=91481,26 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:52:0:52:0,0,1441,0,1441,1441,0,1441,1441,1441 ./.:0,7,6,0:13:50:.:687,131,50,154,0,87,494,126,151,432:0,0,7,6 +20 10065780 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:38:61:0,38,2046 ./.:46:0:46:0,0,893 +20 10065781 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:75:71:0,75,1125 ./.:45:60:44:0,60,900 +20 10065782 . T . . END=10065802 GT:DP:GQ:MIN_DP:PL ./.:82:99:65:0,108,1620 ./.:45:60:44:0,60,900 +20 10065803 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:81:59:0,81,2051 ./.:30:0:28:0,0,0 +20 10065804 . C . . END=10065807 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:0:28:0,0,0 +20 10065808 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:58:31:0,58,735 +20 10065809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:63:31:0,63,945 +20 10065810 . A . . END=10065812 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:0:24:0,0,278 +20 10065813 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:22:4:22:0,4,493 +20 10065814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:0:24:0,0,528 +20 10065815 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:14:24:0,14,587 +20 10065816 . G . . END=10065817 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:0:25:0,0,483 +20 10065818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:22:19:22:0,19,562 +20 10065819 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,585 +20 10065820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:38:24:0,38,676 +20 10065821 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,547 +20 10065822 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:38:24:0,38,657 +20 10065823 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,568 +20 10065824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:47:26:0,47,733 +20 10065825 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:42:25:0,42,725 +20 10065826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:54:25:0,54,810 +20 10065827 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:47:27:0,47,814 +20 10065828 . G . . END=10065832 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:23:0:22:0,0,417 +20 10065833 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:25:24:0,25,632 +20 10065834 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:0:26:0,0,636 +20 10065835 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:60:26:0,60,900 +20 10065836 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:25:27:0,25,715 +20 10065837 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:0:27:0,0,654 +20 10065838 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:38:27:0,38,732 +20 10065839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:41:27:0,41,732 +20 10065840 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:57:30:0,57,877 +20 10065841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:44:30:0,44,854 +20 10065842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:53:29:0,53,880 +20 10065843 . G . . END=10065844 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:0:27:0,0,605 +20 10065845 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:46:27:0,46,818 +20 10065846 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,623 +20 10065847 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:21:27:0,21,696 +20 10065848 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:46:29:0,46,765 +20 10065849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:0:28:0,0,691 +20 10065850 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:2:28:0,2,706 +20 10065851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:51:28:0,51,813 +20 10065852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:50:28:0,50,823 +20 10065853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:0:28:0,0,643 +20 10065854 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:50:28:0,50,828 +20 10065855 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:69:27:0,69,1035 +20 10065856 . A . . END=10065857 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:0:29:0,0,670 +20 10065858 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:43:29:0,43,832 +20 10065859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:18:31:0,18,833 +20 10065860 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:33:32:0,33,907 +20 10065861 . T . . END=10065863 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:63:32:0,63,920 +20 10065864 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:87:31:0,87,1305 +20 10065865 . C . . END=10065870 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:60:31:0,60,943 +20 10065871 . T . . END=10065872 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:31:0,90,1350 +20 10065873 . T . . END=10065874 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:63:32:0,63,966 +20 10065875 . C . . END=10065877 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:32:0,90,1350 +20 10065878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:67:33:0,67,1034 +20 10065879 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:70:34:0,70,1034 +20 10065880 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:96:33:0,96,1440 +20 10065881 . T . . END=10065882 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:76:36:0,76,1137 +20 10065883 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:36:0,102,1530 +20 10065884 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:78:37:0,78,1146 +20 10065885 . A . . END=10065887 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:80:37:0,80,1145 +20 10065888 . C . . END=10065905 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:35:0,102,1530 +20 10065906 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:74:33:0,74,1021 +20 10065907 . T . . END=10066020 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:45:99:36:0,101,1201 +20 10066021 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:95:43:0,95,1245 +20 10066022 . T . . END=10066106 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:99:36:0,100,1147 +20 10066107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:98:40:0,98,1159 +20 10066108 . G . . END=10066123 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:99:37:0,102,1151 +20 10066124 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:92:40:0,92,1121 +20 10066125 . A . . END=10066152 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:99:36:0,99,1102 +20 10066153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:97:36:0,97,1083 +20 10066154 . A . . END=10066162 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:33:0,99,1016 +20 10066163 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:97:36:0,97,1033 +20 10066164 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:83:36:0,83,1017 +20 10066165 . T . . END=10066168 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:35:0,99,1485 +20 10066169 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:83:34:0,83,1038 +20 10066170 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:99:33:0,99,997 +20 10066171 . T . . END=10066173 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:91:32:0,91,970 +20 10066174 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:69:33:0,69,920 +20 10066175 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:93:35:0,93,1395 +20 10066176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:88:35:0,88,1050 +20 10066177 . T . . END=10066178 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:34:0,90,1350 +20 10066179 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:89:35:0,89,1021 +20 10066180 . G . . END=10066183 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:90:30:0,90,940 +20 10066184 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:77:34:0,77,1015 +20 10066185 . G . . END=10066192 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:32:0,90,1350 +20 10066193 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:83:33:0,83,953 +20 10066194 . T . . END=10066205 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:30:0,90,916 +20 10066206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:85:32:0,85,973 +20 10066207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:73:30:0,73,893 +20 10066208 . A . . END=10066211 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:31:0,90,954 +20 10066212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:83:34:0,83,977 +20 10066213 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:64:34:0,64,901 +20 10066214 . C . . END=10066234 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:33:0,90,986 +20 10066235 . T . . END=10066251 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:72:25:0,72,848 +20 10066252 . G . . END=10066265 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:63:25:0,63,945 +20 10066266 . G . . END=10066272 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:75:25:0,75,780 +20 10066273 . G . . END=10066275 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:80:27:0,80,831 +20 10066276 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:70:29:0,70,800 +20 10066277 . T . . END=10066281 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:90:30:0,90,881 +20 10066282 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:76:31:0,76,919 +20 10066283 . G . . END=10066285 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:90:31:0,90,929 +20 10066286 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:66:32:0,66,894 +20 10066287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:32:0,90,1350 +20 10066288 . G . . END=10066290 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:83:32:0,83,944 +20 10066291 . G . . END=10066296 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:32:0,90,1350 +20 10066297 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:84:33:0,84,986 +20 10066298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:79:32:0,79,953 +20 10066299 . G . . END=10066307 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:30:0,90,887 +20 10066308 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:82:31:0,82,948 +20 10066309 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:90:30:0,90,930 +20 10066310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:87:29:0,87,930 +20 10066311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:90:31:0,90,1350 +20 10066312 . G . . END=10066313 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:84:28:0,84,884 +20 10066314 . A . . END=10066317 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:32:0,93,963 +20 10066318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:88:33:0,88,967 +20 10066319 . C . . END=10066340 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:31:0,90,967 +20 10066341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:71:31:0,71,872 +20 10066342 . T . . END=10066344 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:96:33:0,96,1440 +20 10066345 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:82:33:0,82,950 +20 10066346 . C . . END=10066350 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:32:0,90,1350 +20 10066351 . A . . END=10066362 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:81:30:0,81,879 +20 10066363 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:75:29:0,75,780 +20 10066364 . A . . END=10066365 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:87:31:0,87,1305 +20 10066366 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:79:31:0,79,865 +20 10066367 . A . . END=10066374 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:81:30:0,81,1215 +20 10066375 . C . . END=10066380 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:31:0,90,961 +20 10066381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:99:33:0,99,999 +20 10066382 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:76:33:0,76,956 +20 10066383 . T . . END=10066394 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:34:0,102,1024 +20 10066395 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:93:35:0,93,1077 +20 10066396 . G . . END=10066398 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:35:0,102,1530 +20 10066399 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:90:35:0,90,1066 +20 10066400 . T . . END=10066404 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:33:0,99,1072 +20 10066405 . A . . END=10066412 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:90:33:0,90,1350 +20 10066413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:73:33:0,73,899 +20 10066415 . A . . END=10066416 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:81:33:0,81,1215 +20 10066417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:78:31:0,78,1170 +20 10066418 . C . . END=10066428 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:81:31:0,81,1215 +20 10066429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:90:31:0,90,1350 +20 10066430 . T . . END=10066435 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:84:30:0,84,1260 +20 10066436 . C . . END=10066442 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:32:0,93,1395 +20 10066443 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:82:33:0,82,947 +20 10066444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:96:33:0,96,1440 +20 10066445 . T . . END=10066448 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:99:33:0,99,1041 +20 10066449 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:93:31:0,93,984 +20 10066450 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:80:33:0,80,957 +20 10066451 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:75:33:0,75,998 +20 10066452 . T . . END=10066458 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:33:0,90,1350 +20 10066459 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:80:36:0,80,993 +20 10066460 . A . . END=10066462 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:93:33:0,93,1395 +20 10066463 . C . . END=10066475 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:34:0,99,1485 +20 10066476 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:93:40:0,93,1151 +20 10066477 . C . . END=10066496 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:38:0,99,1119 +20 10066497 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:94:42:0,94,1230 +20 10066498 . A . . END=10066511 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:99:40:0,103,1139 +20 10066512 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:94:42:0,94,1249 +20 10066513 . T . . END=10066516 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:41:0,114,1710 +20 10066517 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:88:42:0,88,1169 +20 10066518 . A . . END=10066533 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:40:0,111,1665 +20 10066534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:94:42:0,94,1224 +20 10066535 . A . . END=10066583 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:44:99:42:0,107,1313 +20 10066584 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:96:42:0,96,1219 +20 10066585 . T . . END=10066592 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:99:38:0,108,1620 +20 10066593 . C . . END=10066594 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:93:37:0,93,1104 +20 10066595 . T . . END=10066605 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:99:36:0,99,1171 +20 10066606 . C . . END=10066615 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:90:34:0,90,1091 +20 10066616 . T . . END=10066618 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:87:32:0,87,1305 +20 10066619 . G . . END=10066620 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:32:0,90,1350 +20 10066621 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:89:35:0,89,1078 +20 10066622 . G . . END=10066624 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:33:0,90,1350 +20 10066625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066626 . C . . END=10066627 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:32:0,90,1350 +20 10066628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066629 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:79:32:0,79,979 +20 10066630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066631 . G . . END=10066633 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:78:31:0,78,916 +20 10066634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:84:33:0,84,1260 +20 10066635 . A . . END=10066648 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:75:28:0,75,815 +20 10066649 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:81:30:0,81,1215 +20 10066650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:78:31:0,78,911 +20 10066651 . A . . END=10066652 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:81:31:0,81,1215 +20 10066653 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:67:28:0,67,781 +20 10066654 . A . . END=10066657 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:84:29:0,84,1260 +20 10066658 . A . . END=10066670 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:31:0,90,1350 +20 10066671 . T . . END=10066672 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066673 . A . . END=10066682 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:31:0,90,1350 +20 10066683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066684 . C . . END=10066687 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:33:0,90,1350 +20 10066688 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:88:33:0,88,956 +20 10066689 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:69:33:0,69,918 +20 10066690 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:33:0,93,1395 +20 10066691 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:35:0,99,1485 +20 10066692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:97:36:0,97,1067 +20 10066693 . A . . END=10066708 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:35:0,102,1060 +20 10066709 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:95:41:0,95,1178 +20 10066710 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:41:0,114,1710 +20 10066711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:91:41:0,91,1105 +20 10066712 . T . . END=10066726 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:39:99:38:0,100,1136 +20 10066727 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:97:38:0,97,1141 +20 10066728 . C . . END=10066731 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:40:0,99,1161 +20 10066732 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:98:41:0,98,1197 +20 10066733 . A . . END=10066737 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:39:0,102,1152 +20 10066738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:92:43:0,92,1204 +20 10066739 . C . . END=10066740 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:41:0,113,1279 +20 10066741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:84:42:0,84,1204 +20 10066742 . C . . END=10066852 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:44:99:39:0,99,1245 +20 10066853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:96:43:0,96,1254 +20 10066854 . G . . END=10066884 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:39:99:37:0,108,1122 +20 10066885 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:88:35:0,88,1007 +20 10066886 . C . . END=10066916 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:46:99:37:0,99,1131 +20 10066917 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:47:95:47:0,95,1407 +20 10066918 . T . . END=10066961 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:39:0,102,1260 +20 10066962 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:39:89:39:0,89,1180 +20 10066963 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:99:38:0,108,1620 +20 10066964 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:95:37:0,95,1136 +20 10066965 . T . . END=10066968 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:99:36:0,99,1485 +20 10066969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:88:36:0,88,1137 +20 10066970 . A . . END=10066972 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:35:0,99,1485 +20 10066973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:96:37:0,96,1440 +20 10066974 . G . . END=10066978 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:99:36:0,99,1485 +20 10066979 . C . . END=10066981 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:96:34:0,96,1440 +20 10066982 . T . . END=10066989 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:99:34:0,99,1485 +20 10066990 . T . . END=10066993 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:91:34:0,91,1090 +20 10066994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:62:33:0,62,949 +20 10066995 . A . . END=10067002 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:32:0,93,1005 +20 10067003 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:80:33:0,80,1014 +20 10067004 . T . . END=10067007 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:93:33:0,93,1395 +20 10067008 . A . . END=10067011 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:83:34:0,83,1038 +20 10067012 . A . . END=10067015 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:78:33:0,78,1170 +20 10067016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:81:36:0,81,1215 +20 10067017 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:62:35:0,62,981 +20 10067018 . A . . END=10067028 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:80:33:0,80,1011 +20 10067029 . C . . END=10067031 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:78:33:0,78,1170 +20 10067032 . T . . END=10067036 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:60:34:0,60,900 +20 10067037 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:57:37:0,57,855 +20 10067038 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:54:37:0,54,810 +20 10067039 . T . . END=10067040 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:45:35:0,45,675 +20 10067041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:42:36:0,42,630 +20 10067042 . A . . END=10067043 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:39:33:0,39,585 +20 10067044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:36:32:0,36,540 +20 10067045 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:33:33:0,33,495 +20 10067046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:30:33:0,30,450 +20 10067047 . A . . END=10067048 GT:DP:GQ:MIN_DP:PL ./.:51:96:50:0,96,1440 ./.:32:24:30:0,24,360 +20 10067049 . TAAAAAAAAA TAA,TAAAAAA,T,TA, . . BaseQRankSum=0.177;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=310256,99;ReadPosRankSum=-1.322e+00 GT:AD:DP:GQ:PL:SB ./.:2,9,0,4,7,0:22:99:651,135,106,443,170,627,365,101,591,925,164,0,394,381,340,443,170,627,591,394,627:1,1,12,8 ./.:1,8,9,0,0,0:18:99:571,324,502,248,0,237,593,443,276,696,593,443,276,696,696,593,443,276,696,696,696:0,1,9,8 +20 10067050 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067051 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067052 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067053 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067054 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067055 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067056 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067057 . A *, . . DP=102 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,9,0:22:99:.:651,135,106,443,170,627:1,1,12,8 ./.:.:33:0:33:0,0,485,0,485,485 +20 10067058 . A *, . . DP=103 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,9,0:22:99:.:651,135,106,443,170,627:1,1,12,8 ./.:.:34:75:34:0,75,1125,75,1125,1125 +20 10067059 . A . . END=10067060 GT:DP:GQ:MIN_DP:PL ./.:57:99:50:0,99,1485 ./.:34:75:34:0,75,1125 +20 10067061 . A . . END=10067066 GT:DP:GQ:MIN_DP:PL ./.:57:99:50:0,99,1485 ./.:36:81:34:0,81,1215 +20 10067067 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:50:0,99,1485 ./.:35:93:35:0,93,1395 +20 10067068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:33:70:33:0,70,1002 +20 10067069 . A . . END=10067070 GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:36:90:34:0,90,1350 +20 10067071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:36:90:34:0,90,1350 +20 10067072 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:47:37:0,47,1098 +20 10067073 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:36:87:36:0,87,1091 +20 10067074 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:38:63:38:0,63,1092 +20 10067075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:96:37:0,96,1440 +20 10067076 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:69:37:0,69,1056 +20 10067077 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:79:37:0,79,1096 +20 10067078 . G . . END=10067079 GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:90:34:0,90,1350 +20 10067080 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:82:35:0,82,1059 +20 10067081 . A . . END=10067082 GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:90:34:0,90,1350 +20 10067083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:72:35:0,72,1022 +20 10067084 . T . . END=10067089 GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:93:34:0,93,1395 +20 10067090 . C A, . . DP=85;ExcessHet=3.01;RAW_MQandDP=273948,85 GT:AD:DP:GQ:PL:SB ./.:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 ./.:0,30,0:30:90:969,90,0,969,90,969:0,0,15,15 +20 10067091 . T . . END=10067095 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1063 +20 10067096 . A . . END=10067097 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:35:93:35:0,93,1036 +20 10067098 . T . . END=10067099 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,102,993 +20 10067100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:86:34:0,86,1013 +20 10067101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:96:32:0,96,1016 +20 10067102 . A . . END=10067105 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:35:0,105,1072 +20 10067106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:91:36:0,91,1085 +20 10067107 . T . . END=10067109 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10067110 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:91:36:0,91,1082 +20 10067111 . A . . END=10067112 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10067113 . T . . END=10067114 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:90:36:0,90,1078 +20 10067115 . A . . END=10067120 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:35:99:34:0,99,1485 +20 10067121 . G . . END=10067122 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:96:35:0,96,1049 +20 10067123 . G . . END=10067128 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:35:0,99,1485 +20 10067129 . T . . END=10067130 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:31:90:30:0,90,897 +20 10067131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:99:33:0,99,1018 +20 10067132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:43:34:0,43,910 +20 10067133 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10067134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:66:33:0,66,922 +20 10067135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10067136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:66:33:0,66,929 +20 10067137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:57:34:0,57,953 +20 10067138 . G . . END=10067141 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:72:35:0,72,965 +20 10067142 . C . . END=10067145 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:80:38:0,80,1032 +20 10067146 . A . . END=10067170 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:40:99:37:0,100,1066 +20 10067171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:68:37:0,68,1035 +20 10067172 . G . . END=10067175 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:99:36:0,108,1111 +20 10067176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:98:38:0,98,1089 +20 10067177 . C . . END=10067183 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:38:0,100,1148 +20 10067184 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:81:39:0,81,1089 +20 10067185 . T . . END=10067187 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:99:37:0,99,1164 +20 10067188 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:87:38:0,87,1102 +20 10067189 . T . . END=10067196 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:37:0,105,1133 +20 10067197 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:92:39:0,92,1144 +20 10067198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:40:99:40:0,111,1665 +20 10067199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:88:39:0,88,1165 +20 10067200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:99:37:0,108,1620 +20 10067201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:95:38:0,95,1140 +20 10067202 . C . . END=10067207 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:38:0,105,1575 +20 10067208 . A . . END=10067210 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:94:36:0,94,1068 +20 10067211 . A . . END=10067216 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:84:34:0,84,1260 +20 10067217 . G . . END=10067220 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:96:36:0,96,1440 +20 10067221 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:31:68:31:0,68,923 +20 10067222 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:99:33:0,99,1007 +20 10067223 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:82:33:0,82,1006 +20 10067224 . G . . END=10067238 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:90:32:0,90,1350 +20 10067239 . T . . END=10067243 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:87:32:0,87,1010 +20 10067244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10067245 . A . . END=10067246 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:84:32:0,84,1260 +20 10067247 . A . . END=10067256 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:90:32:0,90,1350 +20 10067257 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:83:33:0,83,974 +20 10067258 . A . . END=10067261 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:33:0,99,1020 +20 10067262 . G . . END=10067263 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10067264 . G A, . . BaseQRankSum=0.369;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=376082,106;ReadPosRankSum=-4.930e-01 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 ./.:20,13,0:33:99:319,0,534,379,573,952:8,12,7,6 +20 10067265 . C . . END=10067280 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:93:33:0,93,1395 +20 10067281 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:66:33:0,66,985 +20 10067282 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:31:59:31:0,59,932 +20 10067283 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:68:33:0,68,991 +20 10067284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:70:34:0,70,1047 +20 10067285 . G . . END=10067286 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:67:34:0,67,1018 +20 10067287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:90:34:0,90,1350 +20 10067288 . A . . END=10067297 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:80:32:0,80,986 +20 10067298 . A . . END=10067299 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:32:90:30:0,90,877 +20 10067300 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:30:72:30:0,72,842 +20 10067301 . G . . END=10067304 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:90:31:0,90,1350 +20 10067305 . G . . END=10067309 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:99:34:0,99,1485 +20 10067310 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:74:36:0,74,1056 +20 10067311 . T . . END=10067318 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:33:0,99,1042 +20 10067319 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:97:36:0,97,1111 +20 10067320 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:50:36:0,50,969 +20 10067321 . A . . END=10067323 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:91:36:0,91,1116 +20 10067324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:36:0,99,1485 +20 10067325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:95:37:0,95,1059 +20 10067326 . C . . END=10067328 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:36:0,102,1530 +20 10067329 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:83:36:0,83,1077 +20 10067330 . T . . END=10067334 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:35:0,99,1060 +20 10067335 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:85:36:0,85,1040 +20 10067336 . C . . END=10067337 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:36:0,99,1485 +20 10067338 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:83:38:0,83,1066 +20 10067339 . A . . END=10067447 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:45:99:37:0,102,1107 +20 10067448 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:47:96:47:0,96,1399 +20 10067449 . G . . END=10067545 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:45:99:38:0,100,1191 +20 10067546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:90:37:0,90,1105 +20 10067547 . C . . END=10067549 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:37:0,99,1485 +20 10067550 . G . . END=10067557 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:93:35:0,93,1081 +20 10067558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:77:35:0,77,1040 +20 10067559 . A . . END=10067566 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:96:33:0,96,1111 +20 10067567 . A . . END=10067586 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:99:36:0,102,1530 +20 10067587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:90:36:0,90,1053 +20 10067588 . G . . END=10067600 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:99:34:0,99,1485 +20 10067601 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:98:39:0,98,1182 +20 10067602 . G . . END=10067624 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:99:37:0,108,1165 +20 10067625 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:41:95:41:0,95,1169 +20 10067626 . A . . END=10067640 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:40:99:36:0,99,1485 +20 10067641 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:96:34:0,96,1440 +20 10067642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:99:35:0,99,1485 +20 10067643 . A . . END=10067656 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:90:32:0,90,1045 +20 10067657 . G . . END=10067658 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:36:0,99,1485 +20 10067659 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:81:33:0,81,941 +20 10067660 . T . . END=10067674 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:99:34:0,99,1049 +20 10067675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:96:36:0,96,1064 +20 10067676 . G . . END=10067716 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:99:36:0,99,1083 +20 10067717 . C . . END=10067719 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:96:37:0,96,1440 +20 10067720 . C . . END=10067721 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:37:0,102,1530 +20 10067722 . A C, . . DP=92;ExcessHet=3.01;RAW_MQandDP=331200,92 GT:AD:DP:GQ:PL:SB ./.:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 ./.:0,38,0:38:99:1185,114,0,1185,114,1185:0,0,19,19 +20 10067723 . C . . END=10067728 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:35:0,99,1485 +20 10067729 . A . . END=10067730 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:96:36:0,96,1440 +20 10067731 . C . . END=10067752 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:36:0,99,1485 +20 10067753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:89:37:0,89,1106 +20 10067754 . T . . END=10067756 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:99:37:0,102,1530 +20 10067757 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:96:38:0,96,1125 +20 10067758 . T . . END=10067764 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:37:0,99,1117 +20 10067765 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:37:0,93,1086 +20 10067766 . C . . END=10067770 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:38:0,105,1575 +20 10067771 . G . . END=10067772 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:92:37:0,92,1052 +20 10067773 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:83:38:0,83,1035 +20 10067774 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:97:38:0,97,1052 +20 10067775 . C . . END=10067814 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:40:99:35:0,102,1044 +20 10067815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:41:93:41:0,93,1201 +20 10067816 . A . . END=10067832 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:41:99:36:0,106,1099 +20 10067833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:42:97:42:0,97,1234 +20 10067834 . T . . END=10067882 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:44:99:42:0,111,1301 +20 10067883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:42:98:42:0,98,1282 +20 10067884 . A . . END=10067953 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:36:0,99,1132 +20 10067954 . T . . END=10067955 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:90:38:0,90,1124 +20 10067956 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:38:0,105,1575 +20 10067957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:96:38:0,96,1107 +20 10067958 . A . . END=10067983 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:36:0,99,1120 +20 10067984 . T . . END=10067987 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:35:0,93,974 +20 10067988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:87:39:0,87,1041 +20 10067989 . A . . END=10067991 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:36:0,99,1485 +20 10067992 . C . . END=10067994 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:35:0,93,970 +20 10067995 . T . . END=10067998 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:99:36:0,99,1485 +20 10067999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:78:35:0,78,968 +20 10068000 . G . . END=10068002 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:99:35:0,99,1485 +20 10068003 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:34:84:34:0,84,931 +20 10068004 . A . . END=10068009 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:90:33:0,90,1350 +20 10068010 . T . . END=10068014 GT:DP:GQ:MIN_DP:PL ./.:39:90:38:0,90,1350 ./.:35:90:33:0,90,1350 +20 10068015 . T . . END=10068017 GT:DP:GQ:MIN_DP:PL ./.:37:84:34:0,84,1260 ./.:35:90:33:0,90,1350 +20 10068018 . T . . END=10068019 GT:DP:GQ:MIN_DP:PL ./.:37:84:34:0,84,1260 ./.:36:99:35:0,99,1485 +20 10068020 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:36:99:35:0,99,1485 +20 10068021 . A . . . GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1260 ./.:34:96:34:0,96,1440 +20 10068022 . A . . . GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1260 ./.:35:99:35:0,99,1485 +20 10068023 . A . . END=10068025 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:34:82:33:0,82,976 +20 10068026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:36:93:36:0,93,1090 +20 10068027 . T . . END=10068028 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:37:99:37:0,99,1139 +20 10068029 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1035 ./.:37:83:37:0,83,1041 +20 10068030 . G . . END=10068033 GT:DP:GQ:MIN_DP:PL ./.:32:72:32:0,72,1080 ./.:37:96:35:0,96,1440 +20 10068034 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:35:12:35:0,12,845 +20 10068035 . G . . END=10068036 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:34:96:34:0,96,1440 +20 10068037 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:34:83:34:0,83,988 +20 10068038 . G . . END=10068040 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:32:93:31:0,93,953 +20 10068041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:93:31:0,93,953 +20 10068042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:71:32:0,71,900 +20 10068043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:93:31:0,93,935 +20 10068044 . T . . END=10068045 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:31:0,93,935 +20 10068046 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:78:31:0,78,907 +20 10068047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:32:0,93,1395 +20 10068048 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:85:32:0,85,919 +20 10068049 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:93:31:0,93,968 +20 10068050 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:77:31:0,77,917 +20 10068051 . T . . END=10068055 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:32:0,93,990 +20 10068056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:74:32:0,74,908 +20 10068057 . C . . END=10068060 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:33:90:32:0,90,959 +20 10068061 . T . . END=10068063 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:34:87:34:0,87,1305 +20 10068064 . C . . END=10068065 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:35:90:35:0,90,1350 +20 10068066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:35:87:35:0,87,1066 +20 10068067 . A . . END=10068068 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:34:90:33:0,90,1350 +20 10068069 . A . . END=10068071 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:87:31:0,87,1305 +20 10068072 . T . . END=10068077 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:90:32:0,90,1350 +20 10068078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:82:32:0,82,965 +20 10068079 . A . . END=10068080 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:90:30:0,90,948 +20 10068081 . T . . END=10068084 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:84:30:0,84,1260 +20 10068085 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:71:29:0,71,866 +20 10068086 . C . . END=10068090 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:84:31:0,84,1260 +20 10068091 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:78:30:0,78,938 +20 10068092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:81:30:0,81,1215 +20 10068093 . C . . END=10068101 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:70:28:0,70,839 +20 10068102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:55:29:0,55,789 +20 10068103 . A . . END=10068105 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:28:81:27:0,81,807 +20 10068106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:27:53:27:0,53,807 +20 10068107 . A . . END=10068108 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:27:81:27:0,81,872 +20 10068109 . T . . END=10068118 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:72:27:0,72,1080 +20 10068119 . T . . END=10068120 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:81:32:0,81,1215 +20 10068121 . T . . END=10068124 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:76:29:0,76,943 +20 10068125 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:28:68:28:0,68,786 +20 10068126 . A . . END=10068128 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:72:29:0,72,1080 +20 10068129 . T . . END=10068135 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:60:28:0,60,900 +20 10068136 . A . . END=10068138 GT:DP:GQ:MIN_DP:PL ./.:40:87:40:0,87,1305 ./.:30:60:28:0,60,900 +20 10068139 . T . . END=10068141 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:30:60:28:0,60,900 +20 10068142 . C . . END=10068148 GT:DP:GQ:MIN_DP:PL ./.:35:81:31:0,81,1215 ./.:30:60:28:0,60,900 +20 10068149 . T . . . GT:DP:GQ:MIN_DP:PL ./.:31:75:31:0,75,1125 ./.:30:60:28:0,60,900 +20 10068150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:75:31:0,75,1125 ./.:31:57:30:0,57,855 +20 10068151 . A . . END=10068154 GT:DP:GQ:MIN_DP:PL ./.:29:63:28:0,63,945 ./.:31:57:30:0,57,855 +20 10068155 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:63:28:0,63,945 ./.:30:47:30:0,47,863 +20 10068156 . A . . END=10068157 GT:DP:GQ:MIN_DP:PL ./.:27:57:27:0,57,855 ./.:34:51:33:0,51,765 +20 10068158 . GTGTATATATATA G, . . BaseQRankSum=-6.520e-01;DP=60;ExcessHet=3.01;MQRankSum=0.328;RAW_MQandDP=93364,29;ReadPosRankSum=0.524 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,4,0:7:57:.:104,0,57,114,69,183:0,3,2,2 ./.:.:31:54:31:0,54,810,54,810,810 +20 10068159 . T *, . . DP=61 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,4,0:7:57:.:104,0,57,114,69,183:0,3,2,2 ./.:.:33:45:32:0,45,675,45,675,675 +20 10068160 . GTATATATATATGTA G,*, . . DP=60;ExcessHet=3.01;RAW_MQandDP=87005,28 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,4,0:6:53:.:735,162,131,102,0,53,507,174,108,472:0,0,2,4 ./.:.:33:45:32:0,45,675,45,675,675,45,675,675,675 +20 10068161 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068162 . A *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068163 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068164 . A *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068165 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068166 . ATATATG A,*, . . BaseQRankSum=-9.800e-01;ClippingRankSum=0.00;DP=53;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=88000,25;ReadPosRankSum=-6.600e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,0,4,0:6:53:.:.:735,507,472,102,108,53,507,472,108,472:0,0,2,4 ./.:2,9,0,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273,224,49,273,273:2,0,3,6 +20 10068167 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,4,0:6:53:.:.:735,102,53,507,108,472:0,0,2,4 ./.:2,9,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273:2,0,3,6 +20 10068168 . ATATG A,*, . . BaseQRankSum=0.447;ClippingRankSum=0.00;DP=53;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=88000,25;ReadPosRankSum=0.660 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,0,4,0:6:53:.:.:735,507,472,102,108,53,507,472,108,472:0,0,2,4 ./.:9,2,0,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273,49,224,273,273:3,6,2,0 +20 10068169 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,4,0:6:53:.:.:735,102,53,507,108,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068170 . A *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,4,0:6:53:.:.:735,102,53,507,108,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068171 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,4,0:6:53:.:.:735,102,53,507,108,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068172 . G *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,4,0:6:53:.:.:735,102,53,507,108,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068173 . T *, . . DP=57 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:29:0:29:0,0,115,0,115,115 +20 10068174 . A *, . . DP=57 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,4,0:6:53:.:735,102,53,507,108,472:0,0,2,4 ./.:.:29:39:29:0,39,585,39,585,585 +20 10068175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:18:20:0,18,270 ./.:29:39:29:0,39,585 +20 10068176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:19:24:17:0,24,360 ./.:30:42:30:0,42,630 +20 10068177 . T . . END=10068180 GT:DP:GQ:MIN_DP:PL ./.:19:24:17:0,24,360 ./.:30:48:29:0,48,720 +20 10068181 . T . . END=10068184 GT:DP:GQ:MIN_DP:PL ./.:16:27:16:0,27,405 ./.:30:48:29:0,48,720 +20 10068185 . T . . . GT:DP:GQ:MIN_DP:PL ./.:16:27:16:0,27,405 ./.:30:51:30:0,51,765 +20 10068186 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:9:16:0,9,570 ./.:30:51:30:0,51,765 +20 10068187 . T . . . GT:DP:GQ:MIN_DP:PL ./.:16:27:15:0,27,405 ./.:30:51:30:0,51,765 +20 10068188 . A . . END=10068190 GT:DP:GQ:MIN_DP:PL ./.:16:27:15:0,27,405 ./.:29:54:29:0,54,810 +20 10068191 . T . . END=10068192 GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,289 ./.:29:54:29:0,54,810 +20 10068193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,289 ./.:30:57:30:0,57,855 +20 10068194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:30:57:30:0,57,855 +20 10068195 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,411 ./.:31:63:30:0,63,945 +20 10068196 . A . . . GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,437 ./.:31:63:30:0,63,945 +20 10068197 . T . . END=10068198 GT:DP:GQ:MIN_DP:PL ./.:13:36:12:0,36,476 ./.:31:63:30:0,63,945 +20 10068199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:27:37:27:0,37,739 +20 10068200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:45:16:0,45,675 ./.:27:69:27:0,69,1035 +20 10068201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:51:18:0,51,765 ./.:28:56:28:0,56,784 +20 10068202 . A . . END=10068203 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:28:73:27:0,73,837 +20 10068204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:29:81:29:0,81,1215 +20 10068205 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:28:78:28:0,78,1170 +20 10068206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:26:61:26:0,61,780 +20 10068207 . C . . END=10068208 GT:DP:GQ:MIN_DP:PL ./.:22:57:21:0,57,855 ./.:28:78:27:0,78,1170 +20 10068209 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:63:23:0,63,945 ./.:28:84:28:0,84,869 +20 10068210 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:29:69:29:0,69,852 +20 10068211 . C . . END=10068219 GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:30:80:30:0,80,955 +20 10068220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:29:0,81,1215 ./.:31:64:31:0,64,884 +20 10068221 . A . . END=10068223 GT:DP:GQ:MIN_DP:PL ./.:29:81:29:0,81,1215 ./.:33:93:33:0,93,1395 +20 10068224 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:29:0,81,1215 ./.:30:76:30:0,76,911 +20 10068225 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:31:90:30:0,90,903 +20 10068226 . T . . END=10068227 GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:90:30:0,90,903 +20 10068228 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:75:31:0,75,892 +20 10068229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:93:31:0,93,978 +20 10068230 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:32:69:32:0,69,869 +20 10068231 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:93:31:0,93,960 +20 10068232 . A . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:33:67:33:0,67,962 +20 10068233 . A . . END=10068237 GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:35:99:34:0,99,992 +20 10068238 . T . . END=10068242 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:35:99:34:0,99,992 +20 10068243 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:37:95:37:0,95,1052 +20 10068244 . C . . END=10068247 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:43:99:36:0,100,1082 +20 10068248 . T . . END=10068290 GT:DP:GQ:MIN_DP:PL ./.:38:99:34:0,102,1384 ./.:43:99:36:0,100,1082 +20 10068291 . C . . END=10068299 GT:DP:GQ:MIN_DP:PL ./.:40:90:36:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068300 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:87:36:0,87,1305 ./.:43:99:36:0,100,1082 +20 10068301 . C . . END=10068308 GT:DP:GQ:MIN_DP:PL ./.:32:72:31:0,72,1080 ./.:43:99:36:0,100,1082 +20 10068309 . T . . END=10068312 GT:DP:GQ:MIN_DP:PL ./.:28:66:26:0,66,990 ./.:43:99:36:0,100,1082 +20 10068313 . A . . END=10068316 GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:43:99:36:0,100,1082 +20 10068317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:43:99:36:0,100,1082 +20 10068318 . C . . END=10068322 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:43:99:36:0,100,1082 +20 10068323 . T . . END=10068328 GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:43:99:36:0,100,1082 +20 10068330 . C . . END=10068338 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068339 . A . . END=10068347 GT:DP:GQ:MIN_DP:PL ./.:31:75:30:0,75,1125 ./.:43:99:36:0,100,1082 +20 10068348 . T . . END=10068352 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068353 . C . . END=10068355 GT:DP:GQ:MIN_DP:PL ./.:29:78:28:0,78,1170 ./.:43:99:36:0,100,1082 +20 10068356 . T . . END=10068361 GT:DP:GQ:MIN_DP:PL ./.:30:84:29:0,84,1260 ./.:43:99:36:0,100,1082 +20 10068362 . T . . END=10068364 GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068365 . G . . END=10068368 GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:43:99:36:0,100,1082 +20 10068369 . A . . END=10068370 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068371 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:98:38:0,98,1091 +20 10068372 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:85:38:0,85,1127 +20 10068373 . A . . END=10068400 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:38:0,102,1162 +20 10068401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:87:38:0,87,1146 +20 10068402 . A . . END=10068405 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:38:0,103,1213 +20 10068406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:89:39:0,89,1187 +20 10068407 . T . . END=10068412 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:37:0,102,1530 +20 10068413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:94:40:0,94,1270 +20 10068414 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:82:38:0,82,1144 +20 10068415 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:94:41:0,94,1290 +20 10068416 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,105,1575 +20 10068417 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:91:41:0,91,1289 +20 10068418 . A . . END=10068420 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:83:39:0,83,1214 +20 10068421 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:65:38:0,65,1064 +20 10068422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:87:40:0,87,1223 +20 10068423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:76:40:0,76,1217 +20 10068424 . G . . END=10068425 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:83:39:0,83,1176 +20 10068426 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:38:0,102,1530 +20 10068427 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:79:37:0,79,1176 +20 10068428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,102,1530 +20 10068429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:75:36:0,75,1093 +20 10068430 . A . . END=10068432 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1163 +20 10068433 . T . . END=10068436 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:37:0,105,1575 +20 10068437 . A . . END=10068438 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:90:37:0,90,1098 +20 10068439 . C . . END=10068442 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:36:0,105,1575 +20 10068443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:72:38:0,72,1086 +20 10068444 . A . . END=10068454 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:34:0,101,1048 +20 10068455 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:92:36:0,92,1051 +20 10068456 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:99:36:0,99,1485 +20 10068457 . C . . END=10068459 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:96:33:0,96,1440 +20 10068460 . A . . END=10068466 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:81:34:0,81,1049 +20 10068467 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:78:31:0,78,881 +20 10068468 . A . . END=10068470 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:87:32:0,87,1305 +20 10068471 . T . . END=10068473 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,955 +20 10068474 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:99:33:0,99,1024 +20 10068475 . T . . END=10068477 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:96:32:0,96,1013 +20 10068478 . T . . END=10068483 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:99:34:0,102,1084 +20 10068484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:93:37:0,93,1101 +20 10068485 . A . . END=10068486 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,105,1575 +20 10068487 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:92:36:0,92,1139 +20 10068488 . T . . END=10068493 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:99:36:0,105,1132 +20 10068494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:89:39:0,89,1128 +20 10068495 . A . . END=10068499 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:38:0,102,1183 +20 10068500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:94:39:0,94,1162 +20 10068501 . C . . END=10068521 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:37:0,99,1134 +20 10068522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:90:38:0,90,1134 +20 10068523 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:86:38:0,86,1162 +20 10068524 . G . . END=10068533 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:37:0,99,1100 +20 10068534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:89:36:0,89,1062 +20 10068535 . T . . END=10068545 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:37:0,102,1139 +20 10068546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:82:40:0,82,1117 +20 10068547 . A . . END=10068556 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:39:0,105,1265 +20 10068557 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:85:40:0,85,1188 +20 10068558 . G . . END=10068560 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:91:42:0,91,1262 +20 10068561 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1304 +20 10068562 . A . . END=10068563 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1261 +20 10068564 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:73:42:0,73,1248 +20 10068565 . T . . END=10068566 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:99:41:0,120,1800 +20 10068567 . G . . END=10068568 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:84:41:0,84,1197 +20 10068569 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:96:43:0,96,1265 +20 10068570 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:84:44:0,84,1255 +20 10068571 . T . . END=10068572 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1316 +20 10068573 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:99:44:0,120,1800 +20 10068574 . T . . END=10068575 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1311 +20 10068576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1355 +20 10068577 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1288 +20 10068578 . T . . END=10068579 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,102,1323 +20 10068580 . G . . END=10068581 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1207 +20 10068582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,120,1800 +20 10068583 . C . . END=10068584 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1193 +20 10068585 . G . . END=10068586 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:86:40:0,86,1180 +20 10068587 . C . . END=10068588 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:90:41:0,90,1154 +20 10068589 . T . . END=10068591 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:99:40:0,120,1280 +20 10068592 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:93:42:0,93,1194 +20 10068593 . G . . END=10068594 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:75:40:0,75,1169 +20 10068595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:99:43:0,107,1244 +20 10068596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:96:43:0,96,1269 +20 10068597 . T . . END=10068601 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:44:0,99,1312 +20 10068602 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:84:45:0,84,1234 +20 10068603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:92:45:0,92,1221 +20 10068604 . C . . END=10068606 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1296 +20 10068607 . C . . END=10068608 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:94:43:0,94,1240 +20 10068609 . T . . END=10068617 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:99:45:0,102,1261 +20 10068618 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:93:46:0,93,1337 +20 10068619 . A . . END=10068624 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:99:44:0,99,1259 +20 10068625 . C . . END=10068626 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:96:43:0,96,1209 +20 10068627 . T . . END=10068628 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:44:0,99,1285 +20 10068629 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:76:43:0,76,1163 +20 10068630 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,111,1203 +20 10068631 . A . . END=10068632 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:90:41:0,90,1189 +20 10068633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:77:40:0,77,1127 +20 10068634 . T . . END=10068636 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:87:40:0,87,1146 +20 10068637 . C . . END=10068638 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:39:0,99,1485 +20 10068639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:68:40:0,68,1135 +20 10068640 . G . . END=10068641 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1107 +20 10068642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:78:37:0,78,1085 +20 10068643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:82:38:0,82,1139 +20 10068644 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:96:35:0,96,1440 +20 10068645 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:72:35:0,72,1015 +20 10068646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:87:33:0,87,965 +20 10068647 . G . . END=10068648 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:70:34:0,70,933 +20 10068649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:96:35:0,96,1440 +20 10068650 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:99:35:0,99,1485 +20 10068651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:56:36:0,56,975 +20 10068652 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:75:36:0,75,1022 +20 10068653 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:60:37:0,60,1005 +20 10068654 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:84:39:0,84,1112 +20 10068655 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,111,1665 +20 10068656 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:88:40:0,88,1136 +20 10068657 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,114,1710 +20 10068658 . T . . END=10068659 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1109 +20 10068660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:76:40:0,76,1107 +20 10068661 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,111,1154 +20 10068662 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:62:39:0,62,1075 +20 10068663 . A . . END=10068664 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1110 +20 10068665 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:70:40:0,70,1086 +20 10068666 . T . . END=10068667 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1109 +20 10068668 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,105,1575 +20 10068669 . G . . END=10068670 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:80:38:0,80,1097 +20 10068671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:90:41:0,90,1165 +20 10068672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:89:41:0,89,1205 +20 10068673 . G . . END=10068674 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,99,1485 +20 10068675 . G . . END=10068676 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:84:36:0,84,1039 +20 10068677 . T . . END=10068686 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:90:32:0,90,1350 +20 10068687 . G . . END=10068690 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:87:32:0,87,1305 +20 10068691 . T . . END=10068694 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,1350 +20 10068695 . G . . END=10068696 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:87:32:0,87,1305 +20 10068697 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:90:33:0,90,1350 +20 10068698 . A . . END=10068710 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:81:28:0,81,989 +20 10068711 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:73:29:0,73,807 +20 10068712 . C . . END=10068718 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:81:28:0,81,1215 +20 10068719 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068720 . A . . END=10068727 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:30:87:29:0,87,943 +20 10068728 . A . . END=10068732 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068733 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:87:29:0,87,932 +20 10068734 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068735 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:81:32:0,81,973 +20 10068736 . G . . END=10068737 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,1350 +20 10068738 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:98:60:0,98,2062 ./.:33:87:32:0,87,1305 +20 10068739 . A . . END=10068741 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:87:32:0,87,1305 +20 10068742 . C . . END=10068747 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:90:33:0,90,1350 +20 10068748 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:83:32:0,83,996 +20 10068749 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10068750 . A . . END=10068759 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:81:31:0,81,1215 +20 10068760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:75:29:0,75,923 +20 10068761 . A . . END=10068763 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:81:28:0,81,1215 +20 10068764 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:73:30:0,73,931 +20 10068765 . A . . END=10068773 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:81:29:0,81,1215 +20 10068774 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:78:30:0,78,908 +20 10068775 . C . . END=10068781 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:84:29:0,84,880 +20 10068782 . G . . END=10068789 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:90:30:0,90,908 +20 10068790 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:84:31:0,84,1260 +20 10068791 . T . . END=10068808 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:72:25:0,72,773 +20 10068809 . A . . END=10068813 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:28:81:27:0,81,874 +20 10068814 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:28:73:28:0,73,861 +20 10068815 . A . . END=10068818 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:82:28:0,82,862 +20 10068819 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:93:33:0,93,1395 +20 10068820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10068821 . A . . END=10068822 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:96:34:0,96,1440 +20 10068823 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10068824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:67:35:0,67,963 +20 10068825 . A . . END=10068863 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:99:35:0,99,1153 +20 10068864 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:91:40:0,91,1086 +20 10068865 . C . . END=10068866 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:41:99:40:0,111,1665 +20 10068867 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:90:40:0,90,1147 +20 10068868 . A . . END=10068875 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:99:38:0,104,1156 +20 10068876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:41:94:41:0,94,1191 +20 10068877 . A . . END=10068879 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:99:38:0,100,1121 +20 10068880 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:72:39:0,72,1066 +20 10068881 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:63:39:0,63,1072 +20 10068882 . A . . END=10068886 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10068887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:95:37:0,95,1070 +20 10068888 . A . . END=10068889 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10068890 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:36:59:36:0,59,1000 +20 10068891 . T . . END=10068892 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:92:35:0,92,998 +20 10068893 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:59:34:0,59,961 +20 10068894 . T . . END=10068896 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:34:0,99,1485 +20 10068897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:71:34:0,71,900 +20 10068898 . C . . END=10068899 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10068900 . G . . END=10068901 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:85:35:0,85,993 +20 10068902 . C . . END=10068906 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:33:0,99,1015 +20 10068907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:85:34:0,85,987 +20 10068908 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:64:35:0,64,972 +20 10068909 . A . . END=10068912 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10068913 . G . . END=10068914 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:96:32:0,96,998 +20 10068915 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:85:34:0,85,983 +20 10068916 . T . . END=10068925 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:33:0,99,1009 +20 10068926 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:96:34:0,96,1440 +20 10068927 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:87:34:0,87,976 +20 10068928 . G . . END=10068932 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10068933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:67:32:0,67,951 +20 10068934 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10068935 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:89:35:0,89,1020 +20 10068936 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10068937 . T . . END=10068938 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:87:34:0,87,1305 +20 10068939 . A . . END=10068940 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10068941 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:79:32:0,79,936 +20 10068942 . A . . END=10068945 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10068946 . G . . END=10068949 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:81:31:0,81,1215 +20 10068950 . A . . END=10068958 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:75:29:0,75,1125 +20 10068959 . A . . END=10068973 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:26:60:24:0,60,900 +20 10068974 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:24:57:24:0,57,855 +20 10068975 . A . . END=10068980 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:26:60:25:0,60,766 +20 10068981 . G A, . . DP=87;ExcessHet=3.01;RAW_MQandDP=313200,87 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 ./.:0,26,0:26:78:845,78,0,845,78,845:0,0,14,12 +20 10068982 . A . . END=10068983 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:69:25:0,69,1035 +20 10068984 . A . . END=10068991 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:72:24:0,72,772 +20 10068992 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:26:0,62,774 +20 10068993 . A . . END=10069002 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,793 +20 10069003 . A . . END=10069006 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:27:0,81,827 +20 10069007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:69:27:0,69,830 +20 10069008 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:75:27:0,75,1125 +20 10069009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:53:27:0,53,829 +20 10069010 . C . . END=10069024 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:72:25:0,72,802 +20 10069025 . C . . END=10069028 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:81:27:0,81,812 +20 10069029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:78:26:0,78,813 +20 10069030 . C . . END=10069031 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:25:0,62,700 +20 10069032 . A . . END=10069038 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:72:26:0,72,786 +20 10069039 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:68:27:0,68,759 +20 10069040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:26:0,72,1080 +20 10069041 . C . . END=10069044 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:26:0,62,739 +20 10069045 . G . . END=10069062 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,812 +20 10069063 . C . . END=10069069 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:27:0,81,847 +20 10069070 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:63:30:0,63,825 +20 10069071 . A . . END=10069078 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:81:29:0,81,1215 +20 10069079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,865 +20 10069080 . T . . END=10069082 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:84:29:0,84,1260 +20 10069083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:76:30:0,76,909 +20 10069084 . C . . END=10069089 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:28:0,81,856 +20 10069090 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069091 . A . . END=10069092 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:87:32:0,87,1305 +20 10069093 . A . . END=10069099 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069100 . A . . END=10069115 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:99:33:0,99,989 +20 10069116 . A . . END=10069119 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:96:34:0,96,1440 +20 10069120 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:81:35:0,81,1003 +20 10069121 . A . . END=10069122 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10069123 . G . . END=10069124 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:99:36:0,99,1485 +20 10069125 . G . . END=10069128 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:34:0,90,1350 +20 10069129 . A . . END=10069131 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:81:33:0,81,1007 +20 10069132 . G . . END=10069135 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:33:0,90,986 +20 10069136 . G . . END=10069144 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:84:29:0,84,1260 +20 10069145 . A . . END=10069167 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:31:0,90,955 +20 10069168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:74:32:0,74,1015 +20 10069169 . G . . END=10069174 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:75:32:0,75,1016 +20 10069176 . G . . END=10069180 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069181 . T . . END=10069183 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069184 . T . . END=10069188 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069190 . T . . END=10069211 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1117 +20 10069212 . A . . END=10069217 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:34:0,99,1485 +20 10069218 . G . . END=10069219 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:93:34:0,93,1395 +20 10069220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:77:34:0,77,1026 +20 10069221 . G . . END=10069230 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:93:32:0,93,1065 +20 10069231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:88:33:0,88,1039 +20 10069232 . G . . END=10069233 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:93:33:0,93,1395 +20 10069234 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:87:33:0,87,1005 +20 10069235 . C . . END=10069239 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:90:33:0,90,1350 +20 10069240 . C . . END=10069245 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:81:32:0,81,1215 +20 10069246 . A . . END=10069250 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:78:30:0,78,1170 +20 10069251 . T . . END=10069254 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:81:29:0,81,1215 +20 10069255 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:49:27:0,49,768 +20 10069256 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:28:0,81,1215 +20 10069257 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:78:26:0,78,832 +20 10069258 . T . . END=10069259 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:81:27:0,81,847 +20 10069260 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:78:27:0,78,1170 +20 10069261 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:66:28:0,66,859 +20 10069262 . T . . END=10069284 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:72:25:0,72,804 +20 10069285 . T . . END=10069287 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:66:26:0,66,807 +20 10069288 . A . . END=10069297 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:26:0,72,1080 +20 10069298 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:41:25:0,41,719 +20 10069299 . G . . END=10069303 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:72:25:0,72,1080 +20 10069304 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:23:69:23:0,69,734 +20 10069305 . T . . END=10069327 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,726 +20 10069328 . T . . END=10069330 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:69:23:0,69,722 +20 10069331 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:46:24:0,46,694 +20 10069332 . T . . END=10069343 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:60:24:0,60,900 +20 10069344 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:57:25:0,57,855 +20 10069345 . G . . END=10069349 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:60:24:0,60,900 +20 10069350 . G . . END=10069351 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:48:25:0,48,707 +20 10069352 . G . . END=10069353 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:63:22:0,63,945 +20 10069354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:22:52:22:0,52,621 +20 10069355 . T . . END=10069357 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:63:23:0,63,945 +20 10069358 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:43:26:0,43,669 +20 10069359 . T . . END=10069364 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,757 +20 10069365 . T . . END=10069372 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:27:0,81,790 +20 10069373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,869 +20 10069374 . A . . END=10069375 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:84:30:0,84,1260 +20 10069376 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,876 +20 10069377 . A . . END=10069385 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:84:29:0,84,1260 +20 10069386 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:71:30:0,71,848 +20 10069387 . T . . END=10069403 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:81:28:0,81,902 +20 10069404 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:69:28:0,69,810 +20 10069405 . T . . END=10069411 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:70:26:0,70,807 +20 10069412 . A . . END=10069418 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:27:0,81,827 +20 10069419 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:59:29:0,59,837 +20 10069420 . C . . END=10069421 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:30:0,90,910 +20 10069422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:75:30:0,75,880 +20 10069423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:66:31:0,66,909 +20 10069424 . T . . END=10069427 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:30:0,90,946 +20 10069428 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:87:30:0,87,1305 +20 10069429 . C . . END=10069430 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:31:0,90,1350 +20 10069431 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069432 . T . . END=10069443 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1350 +20 10069444 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:78:32:0,78,903 +20 10069445 . G . . END=10069453 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:31:0,90,940 +20 10069454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:86:33:0,86,1001 +20 10069455 . T . . END=10069457 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:93:33:0,93,1395 +20 10069458 . T . . END=10069465 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1004 +20 10069466 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:88:35:0,88,967 +20 10069467 . T . . END=10069485 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:35:0,102,1090 +20 10069486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:93:40:0,93,1150 +20 10069487 . G . . END=10069493 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:39:0,99,1485 +20 10069494 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:92:40:0,92,1216 +20 10069495 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:77:41:0,77,1152 +20 10069496 . G . . END=10069509 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,99,1485 +20 10069510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:77:37:0,77,1009 +20 10069511 . T . . END=10069517 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,102,1112 +20 10069518 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:95:37:0,95,1101 +20 10069519 . C . . END=10069524 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:35:0,105,1114 +20 10069525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:78:39:0,78,1141 +20 10069526 . T . . END=10069537 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:38:0,104,1165 +20 10069538 . G . . END=10069539 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:44:92:43:0,92,1207 +20 10069540 . A . . END=10070051 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:47:99:37:0,99,1163 +20 10070052 . G . . END=10070057 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:33:0,93,1395 +20 10070058 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:38:0,102,1530 +20 10070059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:92:37:0,92,1128 +20 10070060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:99:36:0,102,1530 +20 10070061 . T . . END=10070063 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10070064 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:37:0,102,1530 +20 10070065 . A . . END=10070068 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:34:0,93,1395 +20 10070069 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:87:35:0,87,1078 +20 10070070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:96:37:0,96,1440 +20 10070071 . T . . END=10070073 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:87:35:0,87,953 +20 10070075 . T . . END=10070077 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:32:0,93,1395 +20 10070078 . G . . END=10070079 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:80:37:0,80,1068 +20 10070081 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070082 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:89:35:0,89,1081 +20 10070083 . T . . END=10070098 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:34:0,99,956 +20 10070099 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:96:37:0,96,1081 +20 10070100 . T . . END=10070105 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:37:0,105,1575 +20 10070106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:91:37:0,91,1037 +20 10070107 . C . . END=10070155 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:36:0,102,1165 +20 10070156 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:85:36:0,85,1056 +20 10070157 . G . . END=10070162 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1000 +20 10070163 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:96:34:0,96,1440 +20 10070164 . C . . END=10070171 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1002 +20 10070172 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:76:34:0,76,965 +20 10070173 . C . . END=10070192 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:35:0,102,1232 +20 10070193 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:85:39:0,85,1117 +20 10070194 . G . . END=10070233 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:36:0,101,1123 +20 10070234 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:93:39:0,93,1151 +20 10070235 . G . . END=10070259 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,99,1090 +20 10070260 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:94:41:0,94,1207 +20 10070261 . A . . END=10070263 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,99,1485 +20 10070264 . A . . END=10070265 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:92:35:0,92,1023 +20 10070266 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:89:35:0,89,1039 +20 10070267 . T . . END=10070272 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:34:0,96,1440 +20 10070273 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070274 . A . . END=10070279 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:90:32:0,90,1033 +20 10070280 . G . . END=10070287 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:35:0,99,1485 +20 10070288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:93:37:0,93,1055 +20 10070289 . C . . END=10070314 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,103,1113 +20 10070315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:88:40:0,88,1170 +20 10070316 . T . . END=10070328 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:38:0,102,1530 +20 10070329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:67:38:0,67,1133 +20 10070330 . T . . END=10070335 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,105,1575 +20 10070336 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:97:38:0,97,1127 +20 10070337 . C . . END=10070356 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:34:0,102,1083 +20 10070357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:84:38:0,84,1175 +20 10070358 . A . . END=10070366 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,102,1530 +20 10070367 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:94:39:0,94,1172 +20 10070368 . A . . END=10070371 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,102,1131 +20 10070372 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:66:37:0,66,992 +20 10070373 . C . . END=10070412 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:37:0,102,1153 +20 10070413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:92:40:0,92,1190 +20 10070414 . C . . END=10070421 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:39:0,102,1530 +20 10070422 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:96:39:0,96,1440 +20 10070423 . C . . END=10070425 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070426 . G . . END=10070435 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:34:0,90,1071 +20 10070436 . A . . END=10070441 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:37:0,99,1485 +20 10070442 . C . . END=10070443 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:94:37:0,94,1101 +20 10070444 . C . . END=10070493 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:36:0,101,1088 +20 10070494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:88:39:0,88,1182 +20 10070495 . C . . END=10070520 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:36:0,100,1111 +20 10070521 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:85:37:0,85,1074 +20 10070522 . G . . END=10070533 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,99,1129 +20 10070534 . T . . END=10070543 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:33:0,90,1350 +20 10070544 . T . . END=10070545 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:86:33:0,86,1014 +20 10070546 . T . . END=10070553 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:93:33:0,93,1395 +20 10070554 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:88:33:0,88,989 +20 10070555 . G . . END=10070564 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1350 +20 10070565 . G . . END=10070601 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:36:0,105,1144 +20 10070602 . T C, . . BaseQRankSum=-3.081e+00;ClippingRankSum=0.00;DP=112;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=392164,112;ReadPosRankSum=-6.890e-01 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 ./.:21,19,0:40:99:475,0,592,538,649,1187:13,8,8,11 +20 10070603 . A . . END=10070632 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:40:99:38:0,104,1138 +20 10070633 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:42:91:42:0,91,1277 +20 10070634 . G . . END=10070651 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:45:99:43:0,120,1800 +20 10070652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:44:98:44:0,98,1334 +20 10070653 . T . . END=10070893 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:45:99:40:0,99,1230 +20 10070894 . C . . END=10070896 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:41:93:41:0,93,1395 +20 10070897 . G . . END=10070911 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:39:81:39:0,81,1215 +20 10070912 . A . . END=10070914 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:39:78:38:0,78,1170 +20 10070915 . A . . END=10070917 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:40:81:39:0,81,1215 +20 10070918 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:39:75:39:0,75,1125 +20 10070919 . T . . END=10070928 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:40:60:38:0,60,900 +20 10070929 . A . . END=10070932 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:42:57:41:0,57,855 +20 10070933 . C . . END=10070935 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:43:62:43:0,62,945 +20 10070936 . T A, . . BaseQRankSum=-1.071e+00;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=427233,122;ReadPosRankSum=0.014 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 ./.:21,19,0:40:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,12,7,12 +20 10070937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:80:0,120,1800 ./.:43:63:43:0,63,945 +20 10070938 . G GA, . . BaseQRankSum=-8.020e-01;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=412764,117;ReadPosRankSum=-5.400e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 ./.:19,19,0:38:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,10,7,12 +20 10070939 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:40:0:40:0,0,113 +20 10070940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:40:99:40:0,120,1240 +20 10070941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:41:94:41:0,94,1235 +20 10070942 . T . . END=10070958 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:44:99:40:0,108,1250 +20 10070959 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:44:96:44:0,96,1303 +20 10070960 . G . . END=10070969 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:41:99:38:0,102,1530 +20 10070970 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:38:98:38:0,98,1109 +20 10070971 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:39:99:39:0,105,1575 +20 10070972 . A . . END=10070977 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:38:96:36:0,96,1440 +20 10070978 . C . . END=10070982 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070983 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:89:35:0,89,1055 +20 10070984 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:33:74:33:0,74,962 +20 10070985 . G . . END=10070989 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:93:33:0,93,1395 +20 10070990 . G . . END=10070992 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:99:34:0,99,1485 +20 10070993 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:96:36:0,96,1440 +20 10070994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:37:99:37:0,99,1485 +20 10070995 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:81:36:0,81,1078 +20 10070996 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:60:35:0,60,991 +20 10070997 . A . . END=10070998 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070999 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:84:34:0,84,1014 +20 10071000 . T . . END=10071003 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:90:34:0,90,1028 +20 10071004 . T . . END=10071009 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:99:35:0,99,1485 +20 10071010 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:82:35:0,82,1048 +20 10071011 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071012 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:32:96:32:0,96,1031 +20 10071013 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:96:34:0,96,1440 +20 10071015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071016 . A . . END=10071019 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:93:34:0,93,1395 +20 10071020 . G . . END=10071134 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:47:99:35:0,102,1106 +20 10071135 . C T, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=456123,129;ReadPosRankSum=2.25 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 ./.:1,48,0:49:99:1481,137,0,1483,144,1490:0,1,21,27 +20 10071136 . T . . END=10071186 GT:DP:GQ:MIN_DP:PL ./.:83:99:77:0,120,1800 ./.:51:99:45:0,115,1316 +20 10071187 . G A, . . BaseQRankSum=2.97;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=458041,128;ReadPosRankSum=-2.080e-01 GT:AD:DP:GQ:PL:SB ./.:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 ./.:21,24,0:45:99:619,0,444,681,516,1197:13,8,10,14 +20 10071188 . G . . END=10071301 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:43:99:39:0,105,1229 +20 10071302 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:94:42:0,94,1193 +20 10071303 . T . . END=10071337 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:41:99:38:0,105,1151 +20 10071338 . G . . END=10071340 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:38:96:38:0,96,1440 +20 10071341 . C . . END=10071380 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:40:99:37:0,99,1189 +20 10071381 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:95:42:0,95,1187 +20 10071382 . T . . END=10071705 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:47:99:40:0,104,1209 +20 10071706 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:45:96:45:0,96,1325 +20 10071707 . A . . END=10071780 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:49:99:45:0,120,1800 +20 10071781 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:45:86:45:0,86,1292 +20 10071782 . C . . END=10071863 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:43:99:39:0,99,1153 +20 10071864 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:36:74:36:0,74,1010 +20 10071865 . C . . END=10071883 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:39:99:38:0,100,1158 +20 10071884 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:41:96:41:0,96,1187 +20 10071885 . C . . END=10071889 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:99:40:0,102,1207 +20 10071890 . T C, . . BaseQRankSum=-4.435e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=357769,100;ReadPosRankSum=0.584 GT:AD:DP:GQ:PL:SB ./.:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 ./.:20,23,0:43:99:488,0,521,548,590,1138:10,10,9,14 +20 10071891 . G . . END=10072038 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:44:99:39:0,101,1226 +20 10072039 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:93:41:0,93,1189 +20 10072040 . A . . END=10072092 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:99:37:0,101,1113 +20 10072093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:40:98:40:0,98,1264 +20 10072094 . G . . END=10072488 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:52:99:38:0,99,1218 +20 10072489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:93:41:0,93,1120 +20 10072490 . C . . END=10072499 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:43:99:42:0,101,1149 +20 10072500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:86:41:0,86,1135 +20 10072501 . A . . END=10072504 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:43:99:41:0,120,1800 +20 10072505 . A G, . . BaseQRankSum=-1.080e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=374400,104;ReadPosRankSum=0.816 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 ./.:19,20,0:39:99:483,0,448,539,508,1047:8,11,10,10 +20 10072506 . C . . END=10072589 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:44:99:40:0,104,1218 +20 10072590 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:91:41:0,91,1228 +20 10072591 . T . . END=10072628 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:37:0,99,1255 +20 10072629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:38:0,96,1440 +20 10072630 . C . . END=10072631 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,99,1485 +20 10072632 . T . . END=10072634 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:96:36:0,96,1440 +20 10072635 . G . . END=10072642 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1004 +20 10072644 . C . . END=10072654 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072655 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:97:36:0,97,1078 +20 10072656 . C . . END=10072664 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:36:0,105,1575 +20 10072665 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:93:40:0,93,1226 +20 10072666 . A . . END=10072682 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,105,1249 +20 10072683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:96:39:0,96,1225 +20 10072684 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,108,1620 +20 10072685 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:91:37:0,91,1115 +20 10072686 . G . . END=10072688 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,105,1575 +20 10072689 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:38:0,96,1146 +20 10072690 . T . . END=10072710 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1031 +20 10072711 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:92:35:0,92,1023 +20 10072712 . A . . END=10072729 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,102,1089 +20 10072730 . G . . END=10072731 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:93:36:0,93,1066 +20 10072732 . T . . END=10072734 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:36:0,99,1485 +20 10072735 . G . . END=10072738 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1395 +20 10072739 . C . . END=10072745 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:36:0,99,1485 +20 10072746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:84:39:0,84,1083 +20 10072747 . A . . END=10072750 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,111,1107 +20 10072751 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1100 +20 10072752 . T . . END=10072774 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,100,1070 +20 10072775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:84:41:0,84,1074 +20 10072776 . C . . END=10072804 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:36:0,100,1067 +20 10072805 . A . . END=10072809 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:35:0,96,1440 +20 10072810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10072811 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10072812 . A . . END=10072830 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:34:0,99,1101 +20 10072831 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:94:37:0,94,1146 +20 10072832 . G . . END=10072838 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,105,1575 +20 10072839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:89:37:0,89,1143 +20 10072840 . C . . END=10072871 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:36:0,102,1158 +20 10072872 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:98:38:0,98,1118 +20 10072873 . T . . END=10072883 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:39:0,99,1222 +20 10072884 . A . . END=10072890 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:36:0,96,1440 +20 10072891 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1038 +20 10072892 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10072893 . C . . END=10072897 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1054 +20 10072898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:80:36:0,80,1046 +20 10072899 . A . . END=10072909 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:35:0,99,1126 +20 10072910 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:71:35:0,71,1006 +20 10072911 . G . . END=10072913 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10072914 . G . . END=10072915 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:94:35:0,94,997 +20 10072916 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10072917 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10072918 . T . . END=10072929 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:36:0,99,1119 +20 10072930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:78:36:0,78,1062 +20 10072931 . C . . END=10072932 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,99,1485 +20 10072933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:88:34:0,88,999 +20 10072934 . C . . END=10072935 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:32:0,96,904 +20 10072936 . G . . END=10072937 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1002 +20 10072938 . C . . END=10072946 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,99,1095 +20 10072947 . G . . END=10072951 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10072952 . T . . END=10072964 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072965 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:98:38:0,98,1131 +20 10072966 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,105,1575 +20 10072967 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:95:37:0,95,1119 +20 10072968 . C . . END=10072990 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:36:0,99,1142 +20 10072991 . A . . END=10072996 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:96:38:0,96,1440 +20 10072997 . G . . END=10073091 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:34:0,99,1059 +20 10073092 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1073 +20 10073093 . T . . END=10073096 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:39:0,106,1190 +20 10073097 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:87:40:0,87,1147 +20 10073098 . C . . END=10073129 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:47:99:41:0,114,1244 +20 10073130 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:45:95:45:0,95,1349 +20 10073131 . G . . END=10073157 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:45:99:41:0,102,1292 +20 10073158 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:94:42:0,94,1302 +20 10073159 . A . . END=10073175 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:40:0,111,1665 +20 10073176 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:97:43:0,97,1349 +20 10073177 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:43:0,102,1375 +20 10073178 . A . . END=10073180 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:92:42:0,92,1280 +20 10073181 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:43:0,101,1309 +20 10073182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:82:42:0,82,1239 +20 10073183 . T . . END=10073263 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:46:99:39:0,100,1247 +20 10073264 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:94:39:0,94,1135 +20 10073265 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:39:0,108,1620 +20 10073266 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:92:37:0,92,1070 +20 10073267 . G . . END=10073276 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:36:0,104,1165 +20 10073277 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:88:39:0,88,1177 +20 10073278 . A . . END=10073279 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:94:39:0,94,1122 +20 10073280 . T . . END=10073337 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:37:0,99,1166 +20 10073338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:85:37:0,85,1156 +20 10073339 . T . . END=10073344 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:34:0,90,1116 +20 10073345 . A . . END=10073348 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1007 +20 10073349 . G . . END=10073350 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:33:0,90,1073 +20 10073351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:74:34:0,74,1017 +20 10073352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1082 +20 10073353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:88:35:0,88,1083 +20 10073354 . A . . END=10073360 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:33:0,99,1055 +20 10073361 . T . . END=10073364 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:32:0,96,1019 +20 10073365 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:84:34:0,84,1023 +20 10073366 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,943 +20 10073367 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:98:33:0,98,931 +20 10073368 . A . . END=10073369 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1070 +20 10073370 . G . . END=10073371 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10073372 . C . . END=10073377 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,102,1089 +20 10073378 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:95:36:0,95,1044 +20 10073379 . T . . END=10073390 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:35:0,102,1140 +20 10073391 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1126 +20 10073392 . G . . END=10073420 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:38:0,99,1149 +20 10073421 . A . . END=10073425 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:90:39:0,90,1350 +20 10073426 . T . . END=10073434 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:84:34:0,84,1260 +20 10073435 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:78:31:0,78,937 +20 10073436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:84:31:0,84,1260 +20 10073437 . T . . END=10073443 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:31:0,90,1350 +20 10073444 . G . . END=10073448 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10073449 . G . . END=10073450 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10073451 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:83:33:0,83,1017 +20 10073452 . G . . END=10073462 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1080 +20 10073463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1071 +20 10073464 . T . . END=10073472 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:36:0,108,1097 +20 10073473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:71:39:0,71,1136 +20 10073474 . A . . END=10073489 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:34:0,102,1087 +20 10073490 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:90:39:0,90,1177 +20 10073491 . C . . END=10073494 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:37:0,99,1485 +20 10073495 . A . . END=10073498 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:92:36:0,92,1129 +20 10073499 . G . . END=10073500 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,99,1485 +20 10073501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:96:37:0,96,1098 +20 10073502 . A . . END=10073510 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:33:0,99,1017 +20 10073511 . G . . END=10073512 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:35:0,96,1440 +20 10073513 . T . . END=10073551 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:33:0,99,1013 +20 10073552 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:93:31:0,93,978 +20 10073553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,936 +20 10073554 . G . . END=10073560 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:93:31:0,93,963 +20 10073561 . C . . END=10073564 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:33:0,99,1029 +20 10073565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:83:33:0,83,1000 +20 10073566 . T . . END=10073567 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10073568 . A . . END=10073569 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10073570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:93:31:0,93,969 +20 10073571 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1003 +20 10073572 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:76:35:0,76,947 +20 10073573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10073574 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1007 +20 10073575 . C . . END=10073584 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1069 +20 10073585 . A . . END=10073600 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:93:32:0,93,986 +20 10073601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:86:34:0,86,1027 +20 10073602 . A . . END=10073610 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:31:0,90,965 +20 10073611 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:86:35:0,86,992 +20 10073612 . C . . END=10073614 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:34:0,93,1034 +20 10073615 . C . . END=10073699 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:35:0,105,1029 +20 10073700 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:83:38:0,83,1053 +20 10073701 . A . . END=10073722 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:39:0,106,1219 +20 10073723 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:96:41:0,96,1160 +20 10073724 . G . . END=10073758 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:38:0,99,1160 +20 10073759 . T . . END=10073768 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:93:34:0,93,1395 +20 10073769 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:87:33:0,87,1023 +20 10073770 . C . . END=10073771 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:33:0,90,1350 +20 10073772 . A . . END=10073775 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:32:84:31:0,84,1260 +20 10073776 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:33:0,90,1350 +20 10073777 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:81:33:0,81,970 +20 10073778 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:34:0,90,1350 +20 10073779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:87:33:0,87,1305 +20 10073780 . A . . END=10073787 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:32:0,90,1350 +20 10073788 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:85:35:0,85,1030 +20 10073789 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10073790 . T . . END=10073807 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:35:0,99,1150 +20 10073808 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:85:41:0,85,1124 +20 10073809 . C . . END=10073818 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:41:0,114,1295 +20 10073819 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:89:41:0,89,1213 +20 10073820 . T . . END=10073822 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,114,1710 +20 10073823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:87:40:0,87,1216 +20 10073824 . T . . END=10073829 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:39:0,108,1154 +20 10073830 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:91:41:0,91,1215 +20 10073831 . T . . END=10073836 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:40:0,112,1269 +20 10073837 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:95:37:0,95,1115 +20 10073838 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,117,1755 +20 10073839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:92:40:0,92,1218 +20 10073840 . T . . END=10073847 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:40:0,108,1620 +20 10073848 . G . . END=10073849 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:93:40:0,93,1150 +20 10073850 . T . . END=10073854 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,108,1123 +20 10073855 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:95:39:0,95,1159 +20 10073856 . G . . END=10073868 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,100,1132 +20 10073869 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:95:38:0,95,1137 +20 10073870 . C . . END=10073890 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,103,1209 +20 10073891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:93:39:0,93,1204 +20 10073892 . T . . END=10073897 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,102,1530 +20 10073898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:77:36:0,77,1037 +20 10073899 . T . . END=10073900 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:94:37:0,94,1132 +20 10073901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:86:35:0,86,1036 +20 10073902 . G . . END=10073906 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10073907 . C . . END=10073908 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,99,1485 +20 10073909 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:94:35:0,94,1085 +20 10073910 . T . . END=10073928 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:37:0,102,1121 +20 10073929 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:77:37:0,77,1094 +20 10073930 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,99,1485 +20 10073931 . C . . END=10073932 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:35:0,90,1350 +20 10073933 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1305 +20 10073934 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:36:0,90,1350 +20 10073935 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:85:35:0,85,1075 +20 10073936 . A . . END=10073943 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:90:35:0,90,1042 +20 10073944 . C . . END=10073945 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,102,1530 +20 10073946 . G . . END=10073954 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:93:35:0,93,1037 +20 10073955 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,99,1485 +20 10073956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:86:38:0,86,1142 +20 10073957 . C . . END=10073967 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:33:0,99,1029 +20 10073968 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:36:0,96,1051 +20 10073969 . C . . END=10073976 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10073977 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:91:35:0,91,945 +20 10073978 . G . . END=10073982 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10073983 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:92:36:0,92,1043 +20 10073984 . G . . END=10074121 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:36:0,100,1126 +20 10074122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:89:40:0,89,1154 +20 10074123 . G . . END=10074125 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,117,1755 +20 10074126 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:95:40:0,95,1091 +20 10074127 . A . . END=10074129 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,102,1229 +20 10074130 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:94:40:0,94,1163 +20 10074131 . C . . END=10074186 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:37:0,108,1121 +20 10074187 . A G, . . BaseQRankSum=-6.360e-01;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=434523,123;ReadPosRankSum=2.42 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 ./.:17,26,0:43:99:694,0,403,745,481,1226:10,7,16,10 +20 10074188 . T . . END=10074239 GT:DP:GQ:MIN_DP:PL ./.:80:99:71:0,120,1800 ./.:49:99:44:0,113,1271 +20 10074240 . T C, . . BaseQRankSum=-3.298e+00;ClippingRankSum=0.00;DP=136;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=487369,136;ReadPosRankSum=-1.192e+00 GT:AD:DP:GQ:PL:SB ./.:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 ./.:24,25,0:49:99:593,0,646,665,721,1386:13,11,14,11 +20 10074241 . A . . END=10074667 GT:DP:GQ:MIN_DP:PL ./.:74:99:41:0,105,1544 ./.:51:99:39:0,102,1161 +20 10074668 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:96:41:0,96,1440 ./.:37:81:37:0,81,1071 +20 10074669 . A . . END=10074671 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:38:96:36:0,96,1440 +20 10074672 . G . . END=10074674 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:38:99:37:0,99,1485 +20 10074675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:37:90:36:0,90,1350 +20 10074676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:37:90:36:0,90,1350 +20 10074677 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:37:85:37:0,85,1085 +20 10074678 . C . . END=10074695 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:90:33:0,90,1350 +20 10074696 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:35:0,99,1485 +20 10074697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:90:35:0,90,1035 +20 10074698 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:35:0,102,1530 +20 10074699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:94:35:0,94,1061 +20 10074700 . A . . END=10074703 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:34:0,102,1040 +20 10074704 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:93:35:0,93,1038 +20 10074705 . A . . END=10074715 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:36:99:34:0,102,952 +20 10074716 . G A, . . DP=98;ExcessHet=3.01;RAW_MQandDP=350041,98 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 ./.:0,33,0:33:99:1008,99,0,1008,99,1008:0,0,11,22 +20 10074717 . C . . END=10074718 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:35:0,99,1485 +20 10074719 . C . . END=10074720 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:96:35:0,96,1440 +20 10074721 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:36:0,99,1485 +20 10074722 . G . . END=10074723 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:37:93:37:0,93,1395 +20 10074724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:39:99:39:0,99,1485 +20 10074725 . A . . END=10074728 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:40:96:38:0,96,1440 +20 10074729 . G . . END=10074740 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:38:99:37:0,99,1485 +20 10074741 . C . . END=10074755 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:90:32:0,90,1350 +20 10074756 . G . . END=10074763 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1048 +20 10074764 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:32:96:32:0,96,1048 +20 10074765 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1060 +20 10074766 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:96:33:0,96,1440 +20 10074767 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10074768 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074769 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:89:34:0,89,1073 +20 10074770 . A . . END=10074771 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074772 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:99:35:0,99,1485 +20 10074773 . C . . END=10074774 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:96:34:0,96,1440 +20 10074775 . G . . END=10074776 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:36:0,99,1485 +20 10074777 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:78:35:0,78,1051 +20 10074778 . C . . END=10074792 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:93:32:0,93,1015 +20 10074793 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1012 +20 10074794 . C . . END=10074796 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074797 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:76:35:0,76,1017 +20 10074798 . A . . END=10074805 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:37:99:36:0,105,1103 +20 10074806 . G A, . . BaseQRankSum=2.32;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=383277,108;ReadPosRankSum=-1.000e-01 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 ./.:14,23,0:37:99:613,0,307,655,375,1031:8,6,8,15 +20 10074807 . C . . END=10075042 GT:DP:GQ:MIN_DP:PL ./.:68:99:56:0,120,1800 ./.:42:99:35:0,100,1070 +20 10075043 . T C, . . DP=101;ExcessHet=3.01;RAW_MQandDP=360841,101 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 ./.:0,39,0:39:99:1177,116,0,1177,116,1177:0,0,25,14 +20 10075044 . C . . END=10075141 GT:DP:GQ:MIN_DP:PL ./.:55:99:51:0,120,1800 ./.:42:99:37:0,99,1187 +20 10075142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:91:65:0,91,2199 ./.:42:99:37:0,99,1187 +20 10075143 . A . . END=10075145 GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:42:99:37:0,99,1187 +20 10075146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:38:98:38:0,98,1143 +20 10075147 . C . . END=10075167 GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:39:99:36:0,102,1530 +20 10075168 . C T, . . DP=121;ExcessHet=3.01;RAW_MQandDP=428781,121 GT:AD:DP:GQ:PL:SB ./.:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 ./.:0,33,0:33:99:1031,99,0,1031,99,1031:0,0,18,15 +20 10075169 . G . . END=10075173 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:99:36:0,99,1124 +20 10075174 . A . . END=10075182 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:92:35:0,92,1048 +20 10075183 . C . . END=10075188 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:99:35:0,99,1119 +20 10075189 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:98:37:0,98,1107 +20 10075190 . A . . END=10075202 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:99:36:0,100,1083 +20 10075203 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:38:91:38:0,91,1134 +20 10075204 . C . . END=10075205 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:99:40:0,111,1665 +20 10075206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:97:40:0,97,1236 +20 10075207 . A . . END=10075209 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:99:40:0,114,1710 +20 10075210 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:89:40:0,89,1211 +20 10075211 . C . . END=10075462 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:48:99:37:0,101,1025 +20 10075463 . G A, . . BaseQRankSum=0.247;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=-2.174e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:49:0,119,1800,119,1800,1800 ./.:19,23,0:42:99:.:536,0,436,593,503,1096:10,9,8,15 +20 10075464 . G . . END=10075471 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:45:99:43:0,99,1485 +20 10075472 . C . . END=10075476 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:45:93:43:0,93,1395 +20 10075477 . A . . END=10075478 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:44:84:42:0,84,1260 +20 10075479 . A G, . . DP=88;ExcessHet=3.01;RAW_MQandDP=140400,39 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:49:0,119,1800,119,1800,1800 ./.:0,39,0:39:99:.:1465,120,0,1465,120,1465:0,0,17,22 +20 10075480 . T . . END=10075484 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:45:81:44:0,81,1215 +20 10075485 . T . . END=10075489 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:43:72:39:0,72,1080 +20 10075490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:66:40:0,66,990 +20 10075491 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:39:57:39:0,57,855 +20 10075492 . T . . END=10075496 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:54:38:0,54,810 +20 10075497 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:39:51:39:0,51,765 +20 10075498 . T . . END=10075499 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:39:48:39:0,48,720 +20 10075500 . A . . END=10075501 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:42:37:0,42,630 +20 10075502 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:34:48:34:0,48,720 +20 10075503 . A . . END=10075506 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:45:35:0,45,675 +20 10075507 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:39:36:0,39,585 +20 10075508 . GAA G,GA, . . BaseQRankSum=-1.270e-01;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=388921,105;ReadPosRankSum=2.47 GT:AD:DP:GQ:PL:SB ./.:0,0,70,0:70:99:1966,1966,1966,210,210,0,1966,1966,210,1966:0,0,29,41 ./.:12,11,0,0:23:99:357,0,371,393,405,798,393,405,798,798:5,7,5,6 +20 10075509 . A *, . . DP=105 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 ./.:12,11,0:23:99:357,0,371,393,405,798:5,7,5,6 +20 10075510 . A *, . . DP=83 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:12,11,0:23:99:.:357,0,371,393,405,798:5,7,5,6 +20 10075511 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:0:34:0,0,66 +20 10075512 . A . . END=10075513 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10075514 . A . . END=10075516 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10075517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:80:35:0,80,1019 +20 10075518 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10075519 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:87:35:0,87,998 +20 10075520 . C . . END=10075522 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:35:0,102,1530 +20 10075523 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:85:35:0,85,1030 +20 10075524 . A . . END=10075526 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10075527 . T . . END=10075530 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:90:33:0,90,1038 +20 10075531 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:87:34:0,87,1017 +20 10075532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:64:35:0,64,980 +20 10075533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:35:0,90,1062 +20 10075534 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:32:70:32:0,70,951 +20 10075535 . T . . END=10075536 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:34:0,90,1079 +20 10075537 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10075538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:85:34:0,85,1007 +20 10075539 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:99:35:0,102,1530 +20 10075540 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:82:35:0,82,1089 +20 10075541 . A . . END=10075545 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:99:34:0,102,1107 +20 10075546 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:74:35:0,74,1110 +20 10075547 . G . . END=10075555 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:36:0,108,1132 +20 10075556 . T . . END=10075557 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:96:39:0,96,1440 +20 10075558 . T . . END=10075575 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:99:36:0,99,1097 +20 10075576 . A . . END=10075580 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:92:36:0,92,980 +20 10075581 . T . . END=10075582 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:38:0,99,1485 +20 10075583 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:95:41:0,95,1244 +20 10075584 . C . . END=10075587 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:99:38:0,111,1665 +20 10075588 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:86:39:0,86,1177 +20 10075589 . T . . END=10075593 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:99:36:0,99,1088 +20 10075594 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:96:36:0,96,995 +20 10075595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,105,1575 +20 10075596 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:97:36:0,97,1103 +20 10075597 . G . . END=10075603 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:34:0,102,1059 +20 10075604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:85:37:0,85,1068 +20 10075605 . A . . END=10075624 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:35:0,105,1025 +20 10075625 . T . . END=10075628 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:43:90:42:0,90,1350 +20 10075629 . A . . END=10075632 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:81:39:0,81,1215 +20 10075633 . C . . END=10075636 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:72:40:0,72,1080 +20 10075637 . A . . END=10075646 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:60:39:0,60,900 +20 10075647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:57:40:0,57,855 +20 10075648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:54:39:0,54,810 +20 10075649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:51:40:0,51,765 +20 10075650 . A . . END=10075652 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:48:38:0,48,720 +20 10075653 . T . . END=10075654 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:42:38:0,42,630 +20 10075655 . G . . END=10075658 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:39:37:0,39,585 +20 10075659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:36:38:0,36,540 +20 10075660 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:27:39:0,27,405 +20 10075661 . T . . END=10075662 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:24:38:0,24,360 +20 10075663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:21:37:0,21,315 +20 10075664 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:18:38:0,18,270 +20 10075665 . T . . END=10075666 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:9:37:0,9,135 +20 10075667 . A . . END=10075668 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:3:37:0,3,45 +20 10075669 . GA G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=116500,32 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:0,29,0:29:87:.:817,87,0,817,87,817:0,0,15,14 +20 10075670 . A *, . . DP=87 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:0,29,0:29:87:.:817,87,0,817,87,817:0,0,15,14 +20 10075671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:0:34:0,0,0 +20 10075672 . A . . END=10075675 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:35:0,90,1041 +20 10075676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:88:36:0,88,1084 +20 10075677 . A . . END=10075678 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:93:36:0,93,1088 +20 10075679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:68:36:0,68,1003 +20 10075680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:84:36:0,84,1260 +20 10075681 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:58:35:0,58,941 +20 10075682 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:68:35:0,68,952 +20 10075683 . C . . END=10075689 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:80:32:0,80,940 +20 10075690 . A . . END=10075693 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:33:93:32:0,93,1395 +20 10075694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10075695 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:66:31:0,66,898 +20 10075696 . C . . END=10075700 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:31:0,81,1215 +20 10075701 . T . . END=10075703 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:71:31:0,71,933 +20 10075704 . C . . END=10075708 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:28:0,81,851 +20 10075709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:28:71:28:0,71,842 +20 10075710 . A . . END=10075712 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10075713 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:28:55:28:0,55,814 +20 10075714 . T . . END=10075719 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10075720 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:33:76:33:0,76,939 +20 10075721 . T . . END=10075726 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:34:0,90,1099 +20 10075727 . C . . END=10075766 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:99:35:0,99,1085 +20 10075767 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:98:40:0,98,1241 +20 10075768 . T . . END=10075781 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:99:37:0,111,1195 +20 10075782 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:91:40:0,91,1193 +20 10075783 . C . . END=10075926 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:52:99:39:0,101,1196 +20 10075927 . T C, . . BaseQRankSum=-1.298e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=180000,50;ReadPosRankSum=-1.755e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:27,23,0:50:99:.:579,0,718,660,787,1448:16,11,12,11 +20 10075928 . A . . END=10076188 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:54:99:46:0,108,1340 +20 10076189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:95:46:0,95,1312 +20 10076190 . G . . END=10076195 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:99:44:0,106,1307 +20 10076196 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:45:93:45:0,93,1301 +20 10076197 . A . . END=10076249 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:99:41:0,104,1086 +20 10076250 . A G, . . BaseQRankSum=-3.386e+00;DP=123;ExcessHet=3.01;MQRankSum=-1.423e+00;RAW_MQandDP=437066,123;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL:SB ./.:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 ./.:0,43,0:43:99:1227,129,0,1227,129,1227:0,0,25,18 +20 10076251 . A . . END=10076275 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:47:99:42:0,111,1665 +20 10076276 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:94:41:0,94,1144 +20 10076277 . A . . END=10076287 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:99:39:0,104,1189 +20 10076288 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:91:41:0,91,1213 +20 10076289 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:84:41:0,84,1115 +20 10076290 . C . . END=10076292 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:43:99:41:0,106,1300 +20 10076293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:91:41:0,91,1126 +20 10076294 . C . . END=10076301 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:43:99:41:0,107,1181 +20 10076302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:45:73:45:0,73,1206 +20 10076303 . A . . END=10076338 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:49:99:45:0,99,1185 +20 10076339 . A G, . . BaseQRankSum=-6.900e-02;DP=127;ExcessHet=3.01;MQRankSum=-8.660e-01;RAW_MQandDP=454441,127;ReadPosRankSum=1.02 GT:AD:DP:GQ:PL:SB ./.:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 ./.:0,55,0:55:99:1597,164,0,1597,164,1597:0,0,18,37 +20 10076340 . A . . END=10076398 GT:DP:GQ:MIN_DP:PL ./.:88:99:71:0,120,1800 ./.:57:99:47:0,110,1369 +20 10076399 . G A, . . BaseQRankSum=4.15;DP=139;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=500400,139;ReadPosRankSum=-1.058e+00 GT:AD:DP:GQ:PL:SB ./.:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 ./.:0,45,0:45:99:1353,133,0,1353,133,1353:0,0,16,29 +20 10076400 . G . . END=10076410 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:45:99:41:0,115,1400 +20 10076411 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:97:42:0,97,1198 +20 10076412 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:39:0,117,1174 +20 10076413 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:90:41:0,90,1153 +20 10076414 . G . . END=10076418 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:39:0,104,1121 +20 10076419 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:94:41:0,94,1224 +20 10076420 . G . . END=10076444 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:99:39:0,99,1220 +20 10076445 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:90:40:0,90,1216 +20 10076446 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:87:40:0,87,1106 +20 10076447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:40:0,108,1620 +20 10076448 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:92:41:0,92,1226 +20 10076449 . A . . END=10076451 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:37:0,101,1053 +20 10076452 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:76:35:0,76,947 +20 10076453 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:88:38:0,88,1063 +20 10076454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:91:38:0,91,1093 +20 10076455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,105,1575 +20 10076456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:96:38:0,96,1440 +20 10076457 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:80:38:0,80,1031 +20 10076458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:96:37:0,96,1440 +20 10076459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:85:38:0,85,1031 +20 10076460 . A . . END=10076461 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:93:38:0,93,1395 +20 10076462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:38:0,99,1485 +20 10076463 . A . . END=10076467 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:90:35:0,90,964 +20 10076468 . T . . END=10076469 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:68:33:0,68,882 +20 10076470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:33:79:33:0,79,972 +20 10076471 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:81:32:0,81,1215 +20 10076472 . C . . END=10076479 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:71:29:0,71,844 +20 10076480 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:69:29:0,69,1035 +20 10076481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:56:27:0,56,819 +20 10076482 . T . . END=10076483 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:69:29:0,69,815 +20 10076484 . C . . END=10076488 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:70:26:0,70,821 +20 10076489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:52:27:0,52,712 +20 10076490 . A . . END=10076492 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:75:28:0,75,848 +20 10076493 . G . . END=10076494 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:63:27:0,63,707 +20 10076495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:26:78:26:0,78,771 +20 10076496 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:48:27:0,48,732 +20 10076497 . A . . END=10076504 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:64:26:0,64,769 +20 10076505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:28:72:28:0,72,1080 +20 10076506 . A . . END=10076507 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:26:69:25:0,69,1035 +20 10076508 . G . . END=10076509 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:25:72:25:0,72,1080 +20 10076510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:25:64:25:0,64,678 +20 10076511 . A . . END=10076512 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:78:26:0,78,766 +20 10076513 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:81:27:0,81,775 +20 10076514 . T . . END=10076521 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:28:75:27:0,75,1125 +20 10076522 . T . . END=10076527 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:81:28:0,81,836 +20 10076528 . T . . END=10076536 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:90:30:0,90,897 +20 10076537 . A . . END=10076538 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:99:34:0,99,1485 +20 10076539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:96:34:0,96,1440 +20 10076540 . A . . END=10076544 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:99:34:0,99,1034 +20 10076545 . A . . END=10076546 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:76:36:0,76,1000 +20 10076547 . A . . END=10076557 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:99:36:0,99,1089 +20 10076558 . T . . END=10076569 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:90:34:0,90,1350 +20 10076570 . G . . END=10076575 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:87:32:0,87,1305 +20 10076576 . A . . END=10076579 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:90:31:0,90,1350 +20 10076580 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:78:32:0,78,918 +20 10076581 . G . . END=10076599 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:33:90:31:0,90,949 +20 10076600 . G . . END=10076645 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:34:0,99,1081 +20 10076646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:97:40:0,97,1184 +20 10076647 . T . . END=10076685 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:36:0,99,1151 +20 10076686 . A . . END=10076690 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:96:33:0,96,1440 +20 10076691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:99:35:0,99,1485 +20 10076692 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:91:34:0,91,1022 +20 10076693 . T . . END=10076696 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:99:33:0,99,1052 +20 10076697 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:96:32:0,96,1046 +20 10076698 . A . . END=10076706 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:99:33:0,99,1056 +20 10076707 . A . . END=10076708 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:96:34:0,96,1440 +20 10076709 . T . . END=10076748 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:99:35:0,99,1142 +20 10076749 . G A, . . DP=90;ExcessHet=3.01;RAW_MQandDP=140400,39 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,120,1800,120,1800,1800 ./.:0,38,0:38:99:.:1267,114,0,1267,114,1267:0,0,24,14 +20 10076750 . C . . END=10076760 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:37:0,99,1172 +20 10076761 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:81:36:0,81,1066 +20 10076762 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:93:36:0,93,1087 +20 10076763 . G . . END=10076790 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:35:0,100,1069 +20 10076791 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:97:38:0,97,1136 +20 10076792 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:39:0,108,1620 +20 10076793 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:83:39:0,83,1122 +20 10076794 . A . . END=10076795 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:38:0,105,1575 +20 10076796 . A G, . . DP=88;ExcessHet=3.01;RAW_MQandDP=133200,37 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,120,1800,120,1800,1800 ./.:0,37,0:37:99:.:1164,111,0,1164,111,1164:0,0,21,16 +20 10076797 . A . . END=10076799 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:39:0,105,1575 +20 10076800 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:89:40:0,89,1207 +20 10076801 . G . . END=10076817 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:37:0,102,1238 +20 10076818 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:78:37:0,78,1108 +20 10076819 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,108,1158 +20 10076820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:91:36:0,91,1108 +20 10076821 . C . . END=10076859 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:44:99:37:0,108,1171 +20 10076860 . A C, . . DP=94;ExcessHet=3.01;RAW_MQandDP=154800,43 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,120,1800,120,1800,1800 ./.:0,43,0:43:99:.:1227,129,0,1227,129,1227:0,0,19,24 +20 10076861 . G . . END=10076893 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:99:40:0,107,1241 +20 10076894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:97:42:0,97,1220 +20 10076895 . T . . END=10076899 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:99:40:0,106,1236 +20 10076900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:85:39:0,85,1189 +20 10076901 . G . . END=10076903 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:38:0,108,1620 +20 10076904 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:97:38:0,97,1141 +20 10076905 . T . . END=10076908 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:38:0,105,1575 +20 10076909 . G . . END=10076912 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:93:38:0,93,1395 +20 10076913 . T . . END=10076918 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:37:0,99,1485 +20 10076919 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:82:39:0,82,1180 +20 10076920 . A . . END=10076922 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,105,1575 +20 10076923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:93:36:0,93,1057 +20 10076924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,102,1530 +20 10076925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:66:37:0,66,1018 +20 10076926 . A . . END=10076931 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:37:0,99,1485 +20 10076932 . C . . END=10076933 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:93:36:0,93,1070 +20 10076934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:77:36:0,77,1037 +20 10076935 . A . . END=10076936 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:90:36:0,90,1350 +20 10076937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:87:35:0,87,1305 +20 10076938 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:79:35:0,79,1050 +20 10076939 . A . . END=10076941 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:81:34:0,81,1215 +20 10076942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:68:34:0,68,997 +20 10076943 . C . . END=10076944 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:84:34:0,84,1260 +20 10076945 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:69:34:0,69,999 +20 10076946 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:78:32:0,78,1170 +20 10076947 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:69:32:0,69,1035 +20 10076948 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:31:31:0,31,815 +20 10076949 . C . . END=10076951 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:61:31:0,61,912 +20 10076952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:37:31:0,37,829 +20 10076953 . A . . END=10076959 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:66:28:0,66,793 +20 10076960 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:28:52:28:0,52,776 +20 10076961 . C . . END=10076974 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:60:29:0,60,900 +20 10076975 . A . . END=10076976 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:54:27:0,54,810 +20 10076977 . T . . END=10076978 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:51:28:0,51,765 +20 10076979 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:42:30:0,42,779 +20 10076980 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:48:32:0,48,720 +20 10076981 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:0:31:0,0,730 +20 10076982 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:41:30:0,41,751 +20 10076983 . T . . END=10076984 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:0:29:0,0,619 +20 10076985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:48:37:0,48,720 +20 10076986 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:0:35:0,0,321 +20 10076987 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:54:39:0,54,810 +20 10076988 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:0:35:0,0,377 +20 10076989 . CAA CAAAAAA,C,CA,CAAA, . . BaseQRankSum=-1.760e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=-1.670e-01;RAW_MQandDP=346646,102;ReadPosRankSum=0.087 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:7,0,3,13,7,0:30:41:.:.:252,322,705,271,712,1146,41,423,448,376,147,318,276,0,361,322,705,712,423,318,705:4,3,12,11 ./.:1,19,0,0,0,0:20:62:0|1:10076989_C_CAAAA:964,62,0,967,69,975,967,69,975,975,967,69,975,975,975,967,69,975,975,975,975:1,0,12,7 +20 10076990 . A *, . . DP=112 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:7,13,0:30:41:.:252,41,376,322,423,705:4,3,12,11 ./.:.:37:0:37:0,0,382,0,382,382 +20 10076991 . A *, . . DP=111 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:7,13,0:30:41:.:252,41,376,322,423,705:4,3,12,11 ./.:.:37:75:36:0,75,1125,75,1125,1125 +20 10076992 . A . . END=10076995 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:37:75:36:0,75,1125 +20 10076996 . A . . END=10076998 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:36:81:36:0,81,1215 +20 10076999 . A . . END=10077000 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:36:75:36:0,75,1125 +20 10077001 . A . . END=10077007 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:38:81:38:0,81,1215 +20 10077008 . T A, . . BaseQRankSum=-1.748e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.725;RAW_MQandDP=270123,79;ReadPosRankSum=0.805 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 ./.:23,3,0:26:7:0|1:10076989_C_CAAAA:0,7,855,69,864,926:11,12,3,0 +20 10077009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:99:52:0,120,1800 ./.:36:78:36:0,78,1170 +20 10077010 . G A, . . BaseQRankSum=-1.841e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.558;RAW_MQandDP=268523,78;ReadPosRankSum=0.911 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 ./.:21,2,0:23:7:0|1:10076989_C_CAAAA:0,7,855,69,864,925:10,11,2,0 +20 10077011 . A . . END=10077012 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:78:33:0,78,1170 +20 10077013 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:81:33:0,81,1215 +20 10077014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:71:32:0,71,971 +20 10077015 . T A, . . BaseQRankSum=-1.628e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=0.442;RAW_MQandDP=86000,25;ReadPosRankSum=1.18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:24,1,0:25:18:.:0|1:10076989_C_CAAAA:0,18,932,72,938,993:13,11,1,0 +20 10077016 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:81:32:0,81,1215 +20 10077017 . G . . END=10077018 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:31:57:31:0,57,863 +20 10077019 . T . . END=10077025 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:81:29:0,81,952 +20 10077026 . A . . END=10077029 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:31:90:30:0,90,991 +20 10077030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:81:32:0,81,972 +20 10077031 . G . . END=10077035 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:96:32:0,96,992 +20 10077036 . A . . END=10077038 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:99:33:0,99,1055 +20 10077039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:88:33:0,88,1026 +20 10077040 . G . . END=10077042 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:96:32:0,96,1007 +20 10077043 . A . . END=10077059 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:99:34:0,99,1485 +20 10077060 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:35:93:35:0,93,1395 +20 10077061 . A . . END=10077071 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:35:82:33:0,82,1011 +20 10077072 . A . . END=10077074 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:90:30:0,90,958 +20 10077075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:87:30:0,87,1305 +20 10077076 . T . . END=10077079 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:90:31:0,90,987 +20 10077080 . A . . END=10077087 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:34:99:34:0,99,1050 +20 10077088 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:34:70:34:0,70,993 +20 10077089 . T . . END=10077099 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:99:34:0,99,1056 +20 10077100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:38:96:38:0,96,1131 +20 10077101 . C . . END=10077105 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:99:36:0,105,1078 +20 10077106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:83:37:0,83,1073 +20 10077107 . C . . END=10077112 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:99:34:0,99,1485 +20 10077113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:94:36:0,94,1106 +20 10077114 . A . . END=10077174 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:38:99:35:0,99,1127 +20 10077175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:97:36:0,97,1144 +20 10077176 . G . . END=10077197 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:39:99:37:0,102,1207 +20 10077198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:97:41:0,97,1270 +20 10077199 . T . . END=10077244 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:36:0,103,1163 +20 10077245 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:91:37:0,91,1092 +20 10077246 . G . . END=10077258 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:36:0,108,1125 +20 10077259 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:93:41:0,93,1151 +20 10077260 . C . . END=10077266 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:99:41:0,111,1665 +20 10077267 . A T, . . DP=85;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:0,39,0:39:99:.:0|1:10077267_A_T:1716,117,0,1716,117,1716:0,0,22,17 +20 10077268 . G . . END=10077274 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:41:0,102,1530 +20 10077275 . A G, . . DP=84;ExcessHet=3.01;RAW_MQandDP=144000,40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:0,38,0:38:99:.:0|1:10077267_A_T:1719,117,0,1719,117,1719:0,0,20,18 +20 10077276 . A . . END=10077279 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:40:99:38:0,102,1530 +20 10077280 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:94:37:0,94,1146 +20 10077281 . A . . END=10077296 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:39:99:36:0,104,1178 +20 10077297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:44:84:44:0,84,1233 +20 10077298 . A . . END=10077306 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:99:40:0,111,1318 +20 10077307 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:93:41:0,93,1201 +20 10077308 . A . . END=10077614 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:48:99:39:0,99,1193 +20 10077615 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:61:42:0,61,1247 +20 10077616 . A . . END=10077620 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:43:92:42:0,92,1088 +20 10077621 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:45:84:45:0,84,1198 +20 10077622 . G . . END=10077751 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:53:99:44:0,99,1170 +20 10077752 . T C, . . BaseQRankSum=-6.503e+00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=284400,79;ReadPosRankSum=-3.520e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:34,45,0:79:99:.:1374,0,1187,1477,1322,2799:16,18,16,29 ./.:.:53:99:44:0,99,1170,99,1170,1170 +20 10077753 . G . . END=10077767 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:53:99:44:0,99,1170 +20 10077768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:47:91:47:0,91,1379 +20 10077769 . G . . END=10077781 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:40:0,99,1211 +20 10077782 . T . . END=10077785 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:90:43:0,90,1350 +20 10077786 . C . . END=10077788 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:84:43:0,84,1260 +20 10077789 . A . . END=10077794 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:72:40:0,72,1080 +20 10077795 . G . . END=10077797 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:60:42:0,60,900 +20 10077798 . A . . END=10077799 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:57:41:0,57,855 +20 10077800 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:54:39:0,54,810 +20 10077801 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:45:40:0,45,675 +20 10077802 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:42:40:0,42,630 +20 10077803 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:39:39:0,39,585 +20 10077804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:33:40:0,33,495 +20 10077805 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:21:38:0,21,315 +20 10077806 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:18:37:0,18,270 +20 10077807 . T . . END=10077814 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:3:37:0,3,45 +20 10077815 . T . . END=10077819 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:0:38:0,0,0 +20 10077820 . TC T, . . DP=81;ExcessHet=3.01;RAW_MQandDP=126000,35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1276,105,0,1276,105,1276:0,0,18,17 +20 10077821 . C *, . . DP=81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1276,105,0,1276,105,1276:0,0,18,17 +20 10077822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:0:39:0,0,0 +20 10077823 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:78:39:0,78,1170 +20 10077824 . T . . END=10077826 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:81:38:0,81,1215 +20 10077827 . T . . END=10077828 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:78:37:0,78,1170 +20 10077829 . T . . END=10077838 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:84:29:0,84,1260 +20 10077839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:76:29:0,76,834 +20 10077840 . G . . END=10077843 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:81:28:0,81,1215 +20 10077844 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:62:29:0,62,827 +20 10077845 . G . . END=10077848 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:84:30:0,84,1260 +20 10077849 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:32:0,90,1350 +20 10077850 . A . . END=10077851 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:78:30:0,78,840 +20 10077852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:53:29:0,53,797 +20 10077853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:32:0,90,1350 +20 10077854 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1305 +20 10077855 . G . . END=10077858 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:31:0,90,1350 +20 10077859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:73:34:0,73,945 +20 10077860 . A . . END=10077862 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:32:0,90,1350 +20 10077863 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1017 +20 10077864 . G . . END=10077865 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:93:32:0,93,1395 +20 10077866 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:70:33:0,70,960 +20 10077867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:96:33:0,96,1440 +20 10077868 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:83:33:0,83,1030 +20 10077869 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:69:33:0,69,923 +20 10077870 . A . . END=10077871 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1485 +20 10077872 . G . . END=10077873 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:83:35:0,83,1006 +20 10077874 . A . . END=10077877 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1485 +20 10077878 . G . . END=10077879 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:91:34:0,91,1073 +20 10077880 . T . . END=10077989 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:99:35:0,102,1120 +20 10077990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:88:38:0,88,1155 +20 10077991 . C . . END=10077997 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1130 +20 10077998 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1026 +20 10077999 . C . . END=10078002 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,101,1183 +20 10078003 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:95:38:0,95,1164 +20 10078004 . T . . END=10078005 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:38:0,105,1575 +20 10078006 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:83:38:0,83,1168 +20 10078007 . T . . END=10078012 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:37:0,102,1530 +20 10078013 . A . . END=10078014 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1089 +20 10078015 . C . . END=10078017 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,99,1485 +20 10078018 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1078 +20 10078019 . C . . END=10078028 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1530 +20 10078029 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1149 +20 10078030 . G . . END=10078033 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,99,1485 +20 10078034 . A . . END=10078038 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:93:37:0,93,1395 +20 10078039 . T . . END=10078040 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:87:35:0,87,1305 +20 10078041 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1350 +20 10078042 . G . . END=10078049 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:81:34:0,81,1215 +20 10078050 . T . . END=10078055 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:31:0,90,1350 +20 10078056 . T . . END=10078057 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:63:32:0,63,940 +20 10078058 . C . . END=10078064 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:31:0,90,1350 +20 10078065 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1485 +20 10078066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:91:34:0,91,963 +20 10078067 . C . . END=10078071 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1059 +20 10078072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:77:35:0,77,1010 +20 10078073 . T . . END=10078084 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:36:0,99,1073 +20 10078085 . G . . END=10078086 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:95:37:0,95,1098 +20 10078087 . T . . END=10078090 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,101,1082 +20 10078091 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:96:38:0,96,1091 +20 10078092 . C . . END=10078107 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:35:0,99,1076 +20 10078108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:96:38:0,96,1121 +20 10078109 . T . . END=10078115 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1530 +20 10078116 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:96:37:0,96,1096 +20 10078117 . A . . END=10078119 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:37:0,102,1530 +20 10078120 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:97:39:0,97,1183 +20 10078121 . T . . END=10078128 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,100,1114 +20 10078129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:97:36:0,97,1097 +20 10078130 . T . . END=10078137 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:36:0,99,1485 +20 10078138 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1116 +20 10078139 . C . . END=10078145 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,104,1130 +20 10078146 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:84:39:0,84,1164 +20 10078147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:40:0,111,1665 +20 10078148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:93:40:0,93,1202 +20 10078149 . T . . END=10078161 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:39:0,108,1218 +20 10078162 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:96:42:0,96,1251 +20 10078163 . T . . END=10078206 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:39:0,103,1236 +20 10078207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:90:40:0,90,1177 +20 10078208 . G . . END=10078314 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:39:0,104,1208 +20 10078315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:86:40:0,86,1128 +20 10078316 . C . . END=10078344 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:38:0,100,1217 +20 10078345 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:71:39:0,71,1101 +20 10078346 . G . . END=10078389 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:39:0,104,1168 +20 10078390 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:91:40:0,91,1266 +20 10078391 . G . . END=10078403 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:39:0,102,1226 +20 10078404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:98:42:0,98,1294 +20 10078405 . T . . END=10078418 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:99:41:0,104,1300 +20 10078419 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:94:43:0,94,1280 +20 10078420 . C . . END=10078451 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,104,1198 +20 10078452 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:77:41:0,77,1201 +20 10078453 . T . . END=10078469 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:36:0,99,1113 +20 10078470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:82:37:0,82,1111 +20 10078471 . T . . END=10078493 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:38:0,101,1134 +20 10078494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:73:39:0,73,1094 +20 10078495 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:40:0,102,1530 +20 10078496 . A . . END=10078504 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:93:37:0,93,1182 +20 10078505 . G A, . . DP=83;ExcessHet=3.01;RAW_MQandDP=133200,37 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1176,105,0,1176,105,1176:0,0,17,18 +20 10078506 . G . . END=10078512 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:33:0,93,1395 +20 10078513 . G . . END=10078514 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:77:33:0,77,1003 +20 10078515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1013 +20 10078516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:93:32:0,93,1395 +20 10078517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:78:32:0,78,943 +20 10078518 . T . . END=10078519 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:93:32:0,93,1012 +20 10078520 . T . . END=10078527 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1142 +20 10078528 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:35:0,93,1395 +20 10078529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:89:35:0,89,1006 +20 10078530 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:75:35:0,75,964 +20 10078531 . A . . END=10078542 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:34:0,90,1049 +20 10078543 . T . . END=10078545 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1485 +20 10078546 . C . . END=10078551 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:33:0,90,1350 +20 10078552 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:82:33:0,82,976 +20 10078553 . C . . END=10078554 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:33:0,90,1350 +20 10078555 . A . . END=10078556 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:87:33:0,87,1305 +20 10078557 . T . . END=10078562 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:32:0,90,960 +20 10078563 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:68:32:0,68,906 +20 10078564 . T . . END=10078565 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,102,1530 +20 10078566 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:92:36:0,92,1068 +20 10078567 . G . . END=10078570 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,103,1134 +20 10078571 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:98:38:0,98,1081 +20 10078572 . T . . END=10078601 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:99:38:0,104,1286 +20 10078602 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:98:48:0,98,1349 +20 10078603 . C . . END=10078615 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:99:42:0,108,1260 +20 10078616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:96:42:0,96,1192 +20 10078617 . A . . END=10078855 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:47:99:41:0,99,1194 +20 10078856 . A . . END=10078857 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:90:43:0,90,1350 +20 10078858 . G . . END=10078859 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:81:43:0,81,1215 +20 10078860 . T . . END=10078863 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:72:44:0,72,1080 +20 10078864 . A . . END=10078869 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:69:44:0,69,1035 +20 10078870 . G . . END=10078871 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:57:42:0,57,855 +20 10078872 . C . . END=10078873 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:54:45:0,54,810 +20 10078874 . T . . END=10078879 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:48:45:0,48,720 +20 10078880 . C . . END=10078882 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:45:41:0,45,675 +20 10078883 . A . . END=10078885 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:42:40:0,42,630 +20 10078886 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:36:43:0,36,540 +20 10078887 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:33:43:0,33,495 +20 10078888 . G . . END=10078889 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:27:42:0,27,405 +20 10078890 . C . . END=10078891 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:18:42:0,18,270 +20 10078892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:15:42:0,15,225 +20 10078893 . A . . END=10078894 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:12:43:0,12,180 +20 10078895 . T . . END=10078896 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:6:45:0,6,90 +20 10078897 . T TA, . . DP=88;ExcessHet=3.01;RAW_MQandDP=151200,42 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,40,0:40:99:.:1219,129,0,1219,129,1219:0,0,19,21 +20 10078898 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:0:48:0,0,0 +20 10078899 . A . . END=10078907 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:99:46:0,111,1322 +20 10078908 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:88:46:0,88,1279 +20 10078909 . A . . END=10079064 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:51:99:43:0,101,1354 +20 10079065 . T C, . . DP=87;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,39,0:39:99:.:1122,116,0,1122,116,1122:0,0,18,21 +20 10079066 . G . . END=10079103 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,101,1171 +20 10079104 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:98:42:0,98,1160 +20 10079105 . A . . END=10079110 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:38:0,102,1150 +20 10079111 . G . . END=10079113 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:92:36:0,92,1028 +20 10079114 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:77:36:0,77,1044 +20 10079115 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:96:37:0,96,1440 +20 10079116 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:89:36:0,89,1040 +20 10079117 . T . . END=10079118 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:90:36:0,90,1350 +20 10079119 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:89:35:0,89,1037 +20 10079120 . T . . END=10079122 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:35:0,90,1350 +20 10079123 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:87:35:0,87,1009 +20 10079124 . T . . END=10079133 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:35:0,90,1350 +20 10079134 . A . . END=10079136 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:84:38:0,84,1260 +20 10079137 . A . . END=10079140 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:90:37:0,90,1350 +20 10079141 . A . . END=10079142 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,102,1530 +20 10079143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:93:36:0,93,1119 +20 10079144 . A . . END=10079145 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:36:0,99,1485 +20 10079146 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:94:35:0,94,1083 +20 10079147 . T . . END=10079151 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,99,1485 +20 10079152 . T . . END=10079154 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:35:0,93,1395 +20 10079155 . T . . END=10079180 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:37:0,99,1159 +20 10079181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:94:41:0,94,1251 +20 10079182 . T . . END=10079187 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,117,1302 +20 10079188 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:96:43:0,96,1161 +20 10079189 . A . . END=10079216 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:42:0,106,1231 +20 10079217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:98:45:0,98,1252 +20 10079218 . T . . END=10079237 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:42:0,113,1352 +20 10079238 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:89:45:0,89,1298 +20 10079239 . A . . END=10079246 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:99:44:0,113,1301 +20 10079247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:97:43:0,97,1246 +20 10079248 . T . . END=10079253 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:41:0,111,1209 +20 10079254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:98:44:0,98,1341 +20 10079255 . A . . END=10079395 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:49:99:42:0,101,1241 +20 10079396 . A G, . . DP=97;ExcessHet=3.01;RAW_MQandDP=183600,51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,50,0:50:99:.:1433,150,0,1433,150,1433:0,0,26,24 +20 10079397 . C . . END=10079451 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:52:99:39:0,105,1172 +20 10079452 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:88:38:0,88,1105 +20 10079453 . A . . END=10079454 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:38:0,99,1485 +20 10079455 . A . . END=10079461 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:90:37:0,90,1350 +20 10079462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:39:0,99,1485 +20 10079463 . T . . END=10079466 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:90:39:0,90,1350 +20 10079467 . A . . END=10079468 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,99,1485 +20 10079469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:93:39:0,93,1395 +20 10079470 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:84:38:0,84,1124 +20 10079471 . G . . END=10079475 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:33:0,90,1350 +20 10079476 . T G, . . BaseQRankSum=-4.570e+00;DP=79;ExcessHet=3.01;MQRankSum=-8.260e-01;RAW_MQandDP=153410,44;ReadPosRankSum=1.53 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,11,0:44:39:.:39,0,1137,137,1166,1304:6,27,11,0 ./.:.:35:85:35:0,85,1012,85,1012,1012 +20 10079477 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:35:93:35:0,93,1395 +20 10079478 . A . . END=10079481 GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:37:99:36:0,99,1485 +20 10079482 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:36:97:36:0,97,1087 +20 10079483 . A . . END=10079488 GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:36:99:35:0,102,1067 +20 10079489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:47:84:47:0,84,1672 ./.:36:99:35:0,102,1067 +20 10079490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,102,1067 +20 10079491 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:94:37:0,94,1102 +20 10079492 . G . . END=10079494 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,105,1575 +20 10079495 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:98:37:0,98,1127 +20 10079496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,99,1485 +20 10079497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1157 +20 10079498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,99,1485 +20 10079499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:63:36:0,63,1020 +20 10079500 . A . . END=10079503 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10079504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1120 +20 10079505 . G . . END=10079508 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,102,1065 +20 10079509 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:98:39:0,98,1057 +20 10079510 . T . . END=10079519 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:39:0,100,1115 +20 10079520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:98:43:0,98,1225 +20 10079521 . T . . END=10079566 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:41:0,110,1253 +20 10079567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:81:44:0,81,1289 +20 10079568 . C . . END=10079575 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:99:43:0,120,1800 +20 10079576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:85:42:0,85,1240 +20 10079577 . G . . END=10079693 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:99:40:0,100,1193 +20 10079694 . T . . END=10079695 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:90:41:0,90,1275 +20 10079696 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:71:41:0,71,1166 +20 10079697 . A . . END=10079699 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:41:0,99,1485 +20 10079700 . A . . END=10079704 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:90:41:0,90,1350 +20 10079705 . A . . END=10079710 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:84:37:0,84,1260 +20 10079711 . T . . END=10079718 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:72:34:0,72,1080 +20 10079719 . T . . END=10079725 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:63:33:0,63,945 +20 10079726 . A . . END=10079729 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:54:35:0,54,810 +20 10079730 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:51:38:0,51,765 +20 10079731 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:42:38:0,42,630 +20 10079732 . T . . END=10079737 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:39:39:0,39,585 +20 10079738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:36:39:0,36,540 +20 10079739 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:33:38:0,33,495 +20 10079740 . T . . END=10079742 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:24:38:0,24,360 +20 10079743 . A . . END=10079744 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:18:38:0,18,270 +20 10079745 . A . . END=10079747 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:15:39:0,15,225 +20 10079748 . T . . END=10079751 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:12:38:0,12,180 +20 10079752 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:9:39:0,9,135 +20 10079753 . A . . END=10079758 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:3:39:0,3,45 +20 10079759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:6:43:0,6,90 +20 10079760 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:9:42:0,9,135 +20 10079761 . T TAA, . . DP=81;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:40:0,105,1571,105,1571,1571 ./.:0,41,0:41:99:.:1864,126,0,1864,126,1864:0,0,22,19 +20 10079762 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:0:43:0,0,0 +20 10079763 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:28:43:0,28,1126 +20 10079764 . G . . END=10079765 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:42:0,114,1710 +20 10079766 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:67:42:0,67,1172 +20 10079767 . A . . END=10079790 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:38:0,103,1194 +20 10079791 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:97:40:0,97,1176 +20 10079792 . T . . END=10079798 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:38:0,105,1575 +20 10079799 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:97:38:0,97,1091 +20 10079800 . T . . END=10079805 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:35:0,102,1530 +20 10079806 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:95:37:0,95,1135 +20 10079807 . A . . END=10079814 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,102,1530 +20 10079815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:95:38:0,95,1032 +20 10079816 . T . . END=10079820 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,101,1220 +20 10079821 . C G, . . DP=76;ExcessHet=3.01;RAW_MQandDP=129600,36 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:40:0,105,1571,105,1571,1571 ./.:0,36,0:36:99:.:1159,108,0,1159,108,1159:0,0,19,17 +20 10079822 . A . . END=10079993 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:39:0,108,1281 +20 10079994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:80:44:0,80,1196 +20 10079995 . A . . END=10080024 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:38:0,101,1133 +20 10080025 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:92:41:0,92,1155 +20 10080026 . A . . END=10080054 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:36:0,105,1069 +20 10080055 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:93:38:0,93,1125 +20 10080056 . G . . END=10080070 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:35:0,99,1083 +20 10080071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:85:35:0,85,1033 +20 10080072 . G . . END=10080078 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10080079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:81:32:0,81,877 +20 10080080 . A . . END=10080083 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10080084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:78:33:0,78,1001 +20 10080085 . A . . END=10080094 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:33:0,99,1009 +20 10080095 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:92:37:0,92,1117 +20 10080096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:87:37:0,87,1122 +20 10080097 . C . . END=10080135 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:35:0,99,1101 +20 10080136 . T . . END=10080137 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:82:40:0,82,1106 +20 10080138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:41:0,120,1800 +20 10080139 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:76:42:0,76,1214 +20 10080140 . C . . END=10080168 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:40:0,101,1206 +20 10080169 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:89:41:0,89,1265 +20 10080170 . T . . END=10080175 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:41:0,112,1279 +20 10080176 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:92:40:0,92,1172 +20 10080177 . T . . END=10080180 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:40:0,119,1224 +20 10080181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:81:42:0,81,1259 +20 10080182 . C . . END=10080282 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:48:99:38:0,101,1253 +20 10080283 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:97:40:0,97,1193 +20 10080284 . T . . END=10080285 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:41:0,114,1710 +20 10080286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:98:41:0,98,1182 +20 10080287 . T . . END=10080291 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:41:0,111,1210 +20 10080292 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:97:42:0,97,1269 +20 10080293 . G . . END=10080549 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:53:99:38:0,105,1180 +20 10080550 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:60:25:60:0,25,1367 +20 10080551 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:62:50:62:0,50,1706 +20 10080552 . A . . END=10080561 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:64:99:61:0,120,1800 +20 10080562 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:59:83:59:0,83,1562 +20 10080563 . A . . END=10080566 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:60:99:53:0,120,1800 +20 10080567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:59:69:59:0,69,1401 +20 10080568 . A . . END=10080601 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:55:99:44:0,101,1258 +20 10080602 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:77:43:0,77,1116 +20 10080603 . T . . END=10080743 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:54:99:46:0,106,1259 +20 10080744 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:53:89:53:0,89,1446 +20 10080745 . A . . END=10080769 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:49:99:43:0,119,1435 +20 10080770 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:48:94:48:0,94,1393 +20 10080771 . A . . END=10080825 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:44:0,117,1447 +20 10080826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:90:50:0,90,1439 +20 10080827 . A . . END=10080857 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:51:99:46:0,109,1317 +20 10080858 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:97:47:0,97,1316 +20 10080859 . T . . END=10080862 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:45:99:45:0,105,1363 +20 10080863 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:45:94:45:0,94,1365 +20 10080864 . T . . END=10080882 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:49:99:46:0,120,1800 +20 10080883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:94:47:0,94,1343 +20 10080884 . A . . END=10081241 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:41:0,102,1294 +20 10081242 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:89:41:0,89,1256 +20 10081243 . A . . END=10081245 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:38:0,102,1530 +20 10081246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:93:41:0,93,1230 +20 10081247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:39:0,108,1620 +20 10081248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:87:40:0,87,1183 +20 10081249 . A . . END=10081255 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,105,1575 +20 10081256 . G . . END=10081261 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:90:36:0,90,1350 +20 10081262 . G . . END=10081264 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:87:38:0,87,1305 +20 10081265 . G . . END=10081270 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:90:34:0,90,1350 +20 10081271 . T . . END=10081283 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:30:81:28:0,81,1215 +20 10081284 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:29:76:29:0,76,884 +20 10081285 . C . . END=10081292 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:30:81:28:0,81,1215 +20 10081293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:90:31:0,90,1350 +20 10081294 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:78:31:0,78,925 +20 10081295 . T . . END=10081296 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10081297 . A . . END=10081299 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1076 +20 10081300 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:85:34:0,85,1005 +20 10081301 . A . . END=10081304 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:96:34:0,96,1440 +20 10081305 . G . . END=10081308 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081309 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:92:35:0,92,974 +20 10081310 . G . . END=10081313 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,102,1042 +20 10081314 . G . . END=10081316 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:93:35:0,93,1072 +20 10081317 . C . . END=10081318 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081319 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1119 +20 10081320 . G . . END=10081325 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,99,1096 +20 10081326 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:82:35:0,82,997 +20 10081327 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081328 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1090 +20 10081329 . A . . END=10081330 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081331 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1095 +20 10081332 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,99,1485 +20 10081333 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:94:36:0,94,1093 +20 10081334 . G . . END=10081347 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:34:0,99,1485 +20 10081348 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1090 +20 10081349 . C . . END=10081350 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1530 +20 10081351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:94:35:0,94,1055 +20 10081352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,99,1485 +20 10081353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:74:34:0,74,1016 +20 10081354 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1485 +20 10081355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:94:35:0,94,1059 +20 10081356 . C . . END=10081358 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:33:0,99,1009 +20 10081359 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:86:34:0,86,997 +20 10081360 . A . . END=10081361 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1485 +20 10081362 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:84:32:0,84,941 +20 10081363 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:76:31:0,76,910 +20 10081364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:33:0,93,1395 +20 10081365 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:86:34:0,86,1086 +20 10081366 . G . . END=10081369 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,99,1485 +20 10081370 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:77:37:0,77,1114 +20 10081371 . G . . END=10081374 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:36:0,105,1575 +20 10081375 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1094 +20 10081376 . C . . END=10081378 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,102,1070 +20 10081379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1113 +20 10081380 . G . . END=10081381 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,105,1575 +20 10081382 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:87:38:0,87,1157 +20 10081383 . A . . END=10081384 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:38:0,102,1530 +20 10081385 . A . . END=10081391 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:34:0,96,1440 +20 10081392 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:87:35:0,87,1037 +20 10081393 . T . . END=10081394 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,102,1530 +20 10081395 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1395 +20 10081396 . A . . END=10081405 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:37:0,99,1485 +20 10081406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:94:40:0,94,1209 +20 10081407 . A . . END=10081414 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:39:0,108,1620 +20 10081415 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:95:39:0,95,1186 +20 10081416 . C . . END=10081422 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:39:0,104,1189 +20 10081423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:97:39:0,97,1216 +20 10081424 . A . . END=10081437 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:39:0,106,1212 +20 10081438 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:97:38:0,97,1164 +20 10081439 . C . . END=10081448 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:37:0,105,1575 +20 10081449 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:97:37:0,97,1153 +20 10081450 . A . . END=10081576 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:37:0,102,1154 +20 10081577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:87:40:0,87,1122 +20 10081578 . C . . END=10081589 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,100,1067 +20 10081590 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:85:39:0,85,1111 +20 10081591 . A . . END=10081618 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:37:0,99,1163 +20 10081619 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:96:37:0,96,1119 +20 10081620 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:81:36:0,81,1071 +20 10081621 . A . . END=10081623 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1530 +20 10081624 . G . . END=10081625 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1067 +20 10081626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,100,1101 +20 10081627 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:90:36:0,90,1028 +20 10081628 . T . . END=10081629 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,102,1530 +20 10081630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1141 +20 10081631 . T . . END=10081640 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081641 . A . . END=10081643 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:93:35:0,93,1395 +20 10081644 . A . . END=10081650 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:87:34:0,87,1305 +20 10081651 . A . . END=10081654 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:90:32:0,90,1350 +20 10081655 . A . . END=10081659 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:81:30:0,81,923 +20 10081660 . C . . END=10081661 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081662 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:90:36:0,90,1071 +20 10081663 . G . . END=10081666 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,99,1485 +20 10081667 . T . . END=10081677 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:90:32:0,90,1350 +20 10081678 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:68:33:0,68,967 +20 10081679 . A . . END=10081680 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:90:33:0,90,1350 +20 10081681 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:87:33:0,87,1305 +20 10081682 . A . . END=10081692 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:91:32:0,91,1061 +20 10081693 . T . . END=10081695 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:34:0,99,1485 +20 10081696 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:96:35:0,96,1440 +20 10081697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:88:35:0,88,953 +20 10081698 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:96:33:0,96,1440 +20 10081699 . A . . END=10081710 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:34:0,99,1485 +20 10081711 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:89:35:0,89,972 +20 10081712 . A . . END=10081732 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1145 +20 10081733 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:90:38:0,90,1136 +20 10081734 . T . . END=10081743 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:38:0,102,1530 +20 10081744 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:92:40:0,92,1169 +20 10081745 . A . . END=10081749 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:37:0,105,1116 +20 10081750 . C A, . . BaseQRankSum=2.67;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=298800,83;ReadPosRankSum=-4.060e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:44,39,0:83:99:.:1382,0,1525,1514,1643,3157:23,21,19,20 ./.:.:38:95:38:0,95,1088,95,1088,1088 +20 10081751 . T . . END=10081774 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:40:99:34:0,99,1072 +20 10081775 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:36:79:36:0,79,1048 +20 10081776 . A . . END=10081787 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:38:99:36:0,105,1193 +20 10081788 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:40:88:40:0,88,1156 +20 10081789 . T . . END=10081799 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:41:99:37:0,99,1143 +20 10081800 . C T, . . BaseQRankSum=0.241;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=244800,68;ReadPosRankSum=-2.622e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,33,0:68:99:.:1138,0,1222,1244,1322,2565:26,9,17,16 ./.:.:41:99:37:0,99,1143,99,1143,1143 +20 10081801 . A . . END=10081852 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:99:37:0,99,1143 +20 10081853 . T . . END=10081854 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:94:38:0,94,1123 +20 10081855 . T . . END=10081967 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:40:0,111,1224 +20 10081968 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:97:46:0,97,1329 +20 10081969 . A . . END=10082042 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:45:99:39:0,102,1297 +20 10082043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:81:38:0,81,1079 +20 10082044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:96:38:0,96,1440 +20 10082045 . T . . END=10082047 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:39:0,99,1485 +20 10082048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:98:39:0,98,1163 +20 10082049 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,99,1485 +20 10082050 . C . . END=10082056 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:92:34:0,92,1097 +20 10082057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:72:34:0,72,949 +20 10082058 . A . . END=10082061 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:90:33:0,90,1350 +20 10082062 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:87:33:0,87,1305 +20 10082063 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:56:33:0,56,904 +20 10082064 . A . . END=10082067 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:84:33:0,84,1260 +20 10082068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:90:35:0,90,1350 +20 10082069 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:87:34:0,87,1305 +20 10082070 . G . . END=10082073 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:90:32:0,90,1350 +20 10082074 . G . . END=10082075 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:84:32:0,84,1260 +20 10082076 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:78:32:0,78,914 +20 10082077 . G . . END=10082078 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:31:87:31:0,87,1305 +20 10082079 . C . . END=10082080 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:90:32:0,90,1350 +20 10082081 . A . . END=10082082 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:80:32:0,80,945 +20 10082083 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:90:32:0,90,1350 +20 10082084 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:81:32:0,81,972 +20 10082085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:75:30:0,75,890 +20 10082086 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:90:30:0,90,927 +20 10082087 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:75:30:0,75,898 +20 10082088 . A . . END=10082090 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:31:93:31:0,93,972 +20 10082091 . T . . END=10082092 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:99:33:0,99,1024 +20 10082093 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:86:33:0,86,993 +20 10082094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:99:33:0,99,1032 +20 10082095 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:91:35:0,91,988 +20 10082096 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:88:35:0,88,978 +20 10082097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:99:35:0,102,1530 +20 10082098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:94:35:0,94,1056 +20 10082099 . A . . END=10082105 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:99:34:0,99,1052 +20 10082106 . C . . END=10082107 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:96:33:0,96,1440 +20 10082108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:69:36:0,69,1022 +20 10082109 . G . . END=10082110 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:93:36:0,93,1395 +20 10082111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,102,1530 +20 10082112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:96:41:0,96,1106 +20 10082113 . T . . END=10082119 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:40:99:36:0,103,1068 +20 10082120 . A . . END=10082121 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:94:38:0,94,1067 +20 10082122 . G . . END=10082126 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:37:0,103,1098 +20 10082127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:81:39:0,81,1069 +20 10082128 . T . . END=10082131 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:37:0,105,1575 +20 10082132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:97:38:0,97,1138 +20 10082133 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,105,1575 +20 10082134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:84:37:0,84,1033 +20 10082135 . A . . END=10082137 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,108,1620 +20 10082138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:67:36:0,67,1014 +20 10082139 . T . . END=10082140 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:99:37:0,108,1620 +20 10082141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:98:37:0,98,1093 +20 10082142 . G . . END=10082148 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:38:0,108,1620 +20 10082149 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:84:38:0,84,1110 +20 10082150 . C . . END=10082156 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:99:37:0,102,1530 +20 10082157 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:85:41:0,85,1197 +20 10082158 . G . . END=10082162 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:99:41:0,108,1620 +20 10082163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:43:98:43:0,98,1276 +20 10082164 . A . . END=10082318 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:49:99:38:0,99,1147 +20 10082319 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:47:96:47:0,96,1319 +20 10082320 . C . . END=10082372 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:42:0,101,1299 +20 10082373 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:96:46:0,96,1260 +20 10082374 . A . . END=10082447 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:39:0,108,1180 +20 10082448 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:94:42:0,94,1180 +20 10082449 . A . . END=10082475 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:44:99:39:0,112,1170 +20 10082476 . A G, . . BaseQRankSum=1.25;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-5.430e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:43:0,111,1665,111,1665,1665 ./.:19,21,0:40:99:.:552,0,487,609,549,1158:10,9,13,8 +20 10082477 . C . . END=10082540 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:45:99:41:0,104,1252 +20 10082541 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:47:92:47:0,92,1352 +20 10082542 . T . . END=10082636 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:52:99:45:0,104,1432 +20 10082637 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:48:96:48:0,96,1317 +20 10082638 . T . . END=10082803 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:40:0,99,1211 +20 10082804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:43:96:43:0,96,1286 +20 10082805 . T . . END=10082807 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:42:0,120,1800 +20 10082808 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:93:42:0,93,1217 +20 10082809 . A . . END=10082877 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:37:0,99,1146 +20 10082878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:93:38:0,93,1395 +20 10082879 . A . . END=10082884 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:38:0,99,1192 +20 10082885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:83:43:0,83,1521 ./.:38:77:38:0,77,1130 +20 10082886 . C . . END=10082891 GT:DP:GQ:MIN_DP:PL ./.:43:99:42:0,99,1485 ./.:36:99:35:0,102,1530 +20 10082892 . C T, . . DP=75;ExcessHet=3.01;RAW_MQandDP=267241,75 GT:AD:DP:GQ:PL:SB ./.:0,44,0:44:99:1741,132,0,1741,132,1741:0,0,20,24 ./.:0,31,0:31:93:967,93,0,967,93,967:0,0,17,14 +20 10082893 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:35:99:35:0,105,1072 +20 10082894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:97:36:0,97,1085 +20 10082895 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:35:99:35:0,105,1087 +20 10082896 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:97:36:0,97,1100 +20 10082897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:99:36:0,108,1155 +20 10082898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:73:36:0,73,1054 +20 10082899 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:93:36:0,93,1086 +20 10082900 . C . . END=10082901 GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:38:99:36:0,105,1102 +20 10082902 . C . . END=10082903 GT:DP:GQ:MIN_DP:PL ./.:38:96:38:0,96,1440 ./.:38:99:36:0,105,1102 +20 10082904 . C . . END=10082905 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,102,1530 ./.:38:99:36:0,105,1102 +20 10082906 . T . . END=10082909 GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:38:99:36:0,105,1102 +20 10082910 . A . . . GT:DP:GQ:MIN_DP:PL ./.:35:83:35:0,83,1220 ./.:38:99:36:0,105,1102 +20 10082911 . C . . END=10082913 GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:38:99:36:0,105,1102 +20 10082914 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:40:86:40:0,86,1121 +20 10082915 . C . . END=10082918 GT:DP:GQ:MIN_DP:PL ./.:37:99:35:0,99,1485 ./.:38:99:36:0,99,1017 +20 10082919 . A . . END=10082924 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:38:99:36:0,99,1017 +20 10082925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:38:0,99,1485 ./.:38:99:36:0,99,1017 +20 10082926 . C . . END=10082930 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:38:99:36:0,99,1017 +20 10082931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:75:38:0,75,1443 ./.:38:99:36:0,99,1017 +20 10082932 . C . . END=10082938 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,99,1017 +20 10082939 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:94:37:0,94,1136 +20 10082940 . C . . END=10082942 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:35:0,99,1485 +20 10082943 . G . . END=10082953 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:32:0,90,980 +20 10082954 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,983 +20 10082955 . C . . END=10082958 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:93:32:0,93,1395 +20 10082959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:84:34:0,84,1018 +20 10082960 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10082961 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:96:35:0,96,1440 +20 10082962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:37:0,102,1530 +20 10082963 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:92:37:0,92,1084 +20 10082964 . C . . END=10082967 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,102,1530 +20 10082968 . T . . END=10082971 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:95:37:0,95,1115 +20 10082972 . T . . END=10082973 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082974 . C . . END=10082975 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:38:0,96,1124 +20 10082976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082977 . A . . END=10082983 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:93:33:0,93,1084 +20 10082984 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:85:37:0,85,1052 +20 10082985 . C . . END=10082986 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082987 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:87:38:0,87,1133 +20 10082988 . A . . END=10082990 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:96:36:0,96,1440 +20 10082991 . G . . END=10082998 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:36:0,99,1130 +20 10082999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:81:33:0,81,984 +20 10083000 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:91:36:0,91,1067 +20 10083001 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10083002 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:77:36:0,77,1024 +20 10083003 . A . . END=10083006 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:90:34:0,90,1350 +20 10083007 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:87:34:0,87,1032 +20 10083008 . C . . END=10083014 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:93:33:0,93,1061 +20 10083015 . A . . END=10083016 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:78:32:0,78,933 +20 10083017 . G . . END=10083018 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:95:32:0,95,893 +20 10083019 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:85:32:0,85,960 +20 10083020 . T . . END=10083022 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:92:31:0,92,936 +20 10083023 . C . . END=10083028 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,102,1041 +20 10083029 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:94:35:0,94,1065 +20 10083030 . A . . END=10083046 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:33:0,99,1026 +20 10083047 . T . . END=10083058 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:90:32:0,90,1350 +20 10083059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:82:31:0,82,972 +20 10083060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10083061 . C . . END=10083062 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:76:32:0,76,918 +20 10083063 . T . . END=10083065 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:31:0,90,1350 +20 10083066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:87:29:0,87,895 +20 10083067 . C . . END=10083068 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:31:0,90,1350 +20 10083069 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:77:31:0,77,894 +20 10083070 . T . . END=10083072 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:92:31:0,92,926 +20 10083073 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:87:29:0,87,847 +20 10083074 . T . . END=10083076 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:96:32:0,96,977 +20 10083077 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:74:30:0,74,862 +20 10083078 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:96:32:0,96,1025 +20 10083079 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:63:34:0,63,991 +20 10083080 . T . . END=10083081 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,102,1085 +20 10083082 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:87:34:0,87,999 +20 10083083 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,105,1575 +20 10083084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:89:35:0,89,1057 +20 10083085 . T . . END=10083096 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:36:0,99,1088 +20 10083097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:93:42:0,93,1273 +20 10083098 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:78:42:0,78,1162 +20 10083099 . A . . END=10083139 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,99,1340 +20 10083140 . T . . END=10083142 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:37:0,96,1440 +20 10083143 . T . . END=10083149 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,99,1485 +20 10083150 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:85:34:0,85,978 +20 10083151 . T . . END=10083167 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:33:0,99,1040 +20 10083168 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:92:40:0,92,1180 +20 10083169 . T . . END=10083175 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:37:0,102,1220 +20 10083176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:90:38:0,90,1132 +20 10083177 . C . . END=10083190 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,108,1141 +20 10083191 . A T, . . BaseQRankSum=-1.131e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-6.800e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:18,20,0:38:99:.:512,0,452,566,512,1078:11,7,10,10 +20 10083192 . C . . END=10083211 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:99:41:0,109,1223 +20 10083212 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:83:43:0,83,1119 +20 10083213 . C . . END=10083230 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:99:42:0,108,1262 +20 10083231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:74:44:0,74,1206 +20 10083232 . T . . END=10083238 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,108,1620 +20 10083239 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:89:40:0,89,1148 +20 10083240 . C . . END=10083277 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,102,1101 +20 10083278 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:94:37:0,94,1074 +20 10083279 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,102,1530 +20 10083280 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:53:35:0,53,919 +20 10083281 . T . . END=10083282 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,99,1090 +20 10083283 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:92:37:0,92,1118 +20 10083284 . A . . END=10083291 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,102,1150 +20 10083292 . G . . END=10083293 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:94:38:0,94,1086 +20 10083294 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:78:37:0,78,1043 +20 10083295 . A . . END=10083309 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:37:0,99,1485 +20 10083310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:93:37:0,93,1097 +20 10083311 . T . . END=10083312 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,99,1120 +20 10083313 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:71:37:0,71,1016 +20 10083314 . C . . END=10083341 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:36:0,105,1075 +20 10083342 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:93:40:0,93,1205 +20 10083343 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:40:0,104,1211 +20 10083344 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:83:39:0,83,1140 +20 10083345 . C . . END=10083349 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:39:0,102,1530 +20 10083350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:89:40:0,89,1193 +20 10083351 . A . . END=10083384 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:37:0,105,1155 +20 10083385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:82:38:0,82,1160 +20 10083386 . A . . END=10083387 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,108,1620 +20 10083388 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:84:39:0,84,1155 +20 10083389 . T . . END=10083395 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,102,1530 +20 10083396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:67:41:0,67,1215 +20 10083397 . G . . END=10083454 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:47:99:42:0,106,1414 +20 10083455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:47:94:47:0,94,1236 +20 10083456 . T . . END=10083566 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:48:99:40:0,105,1312 +20 10083567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:92:45:0,92,1279 +20 10083568 . T . . END=10083655 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:40:0,103,1143 +20 10083656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:92:41:0,92,1192 +20 10083657 . A . . END=10083663 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,112,1072 +20 10083664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:97:40:0,97,1165 +20 10083665 . A . . END=10083675 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,108,1197 +20 10083676 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:90:41:0,90,1207 +20 10083677 . G . . END=10083700 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:38:0,99,1135 +20 10083701 . A . . END=10083705 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:90:40:0,90,1150 +20 10083706 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:40:0,102,1530 +20 10083707 . A . . END=10083711 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:91:36:0,91,1073 +20 10083712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:89:35:0,89,991 +20 10083713 . T . . END=10083714 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:96:35:0,96,1440 +20 10083715 . C . . END=10083724 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:33:0,99,1013 +20 10083725 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:85:34:0,85,1014 +20 10083726 . G . . END=10083737 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:91:33:0,91,1009 +20 10083738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:85:32:0,85,989 +20 10083739 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:93:32:0,93,1395 +20 10083740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:87:33:0,87,949 +20 10083741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:93:31:0,93,984 +20 10083742 . A . . END=10083753 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:70:29:0,70,849 +20 10083754 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:32:0,90,1350 +20 10083755 . G . . END=10083756 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:87:30:0,87,1305 +20 10083757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:79:30:0,79,920 +20 10083758 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:81:30:0,81,1215 +20 10083759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:79:30:0,79,913 +20 10083760 . C . . END=10083771 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:81:29:0,81,974 +20 10083772 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:76:29:0,76,862 +20 10083773 . C . . END=10083775 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:84:30:0,84,1260 +20 10083776 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:78:30:0,78,896 +20 10083777 . A . . END=10083783 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:84:29:0,84,1260 +20 10083784 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:71:29:0,71,813 +20 10083785 . T . . END=10083787 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:28:81:27:0,81,838 +20 10083788 . A . . END=10083789 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:93:32:0,93,1395 +20 10083790 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:55:33:0,55,948 +20 10083791 . A . . END=10083797 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10083798 . A . . END=10083801 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:84:31:0,84,1260 +20 10083802 . C . . END=10083807 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1025 +20 10083808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,944 +20 10083809 . T . . END=10083812 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:31:0,90,1350 +20 10083813 . A . . END=10083823 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1056 +20 10083824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:96:36:0,96,1075 +20 10083825 . G . . END=10083849 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,102,1128 +20 10083850 . A . . END=10083851 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:37:0,96,1440 +20 10083852 . C . . END=10084120 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:51:99:36:0,99,1185 +20 10084121 . C T, . . BaseQRankSum=-1.401e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=-4.290e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:1,46,0:47:99:.:1486,107,0,1489,138,1521:0,1,17,29 +20 10084122 . T . . END=10084188 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:50:99:40:0,108,1299 +20 10084189 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:96:40:0,96,1186 +20 10084190 . A . . END=10084209 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:34:0,99,1069 +20 10084210 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:89:38:0,89,1174 +20 10084211 . T . . END=10084238 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:36:0,102,1178 +20 10084239 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:77:37:0,77,1046 +20 10084240 . T . . END=10084255 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,100,1099 +20 10084256 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:87:40:0,87,1258 +20 10084257 . T . . END=10084268 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,111,1332 +20 10084269 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:97:43:0,97,1303 +20 10084270 . T . . END=10084457 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:49:99:41:0,102,1277 +20 10084458 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:53:97:53:0,97,1503 +20 10084459 . T . . END=10084574 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:50:99:38:0,99,1175 +20 10084575 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:88:40:0,88,1201 +20 10084576 . T . . END=10084599 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:38:0,103,1215 +20 10084600 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:93:42:0,93,1312 +20 10084601 . G . . END=10084625 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,99,1153 +20 10084626 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:98:37:0,98,1124 +20 10084627 . A . . END=10084631 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:34:0,102,1044 +20 10084632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:91:35:0,91,1023 +20 10084633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:35:0,105,1091 +20 10084634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:96:37:0,96,1096 +20 10084635 . A . . END=10084637 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:36:0,107,1043 +20 10084638 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:89:37:0,89,1055 +20 10084639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:90:39:0,90,1213 +20 10084640 . G . . END=10084651 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,109,1178 +20 10084652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:86:39:0,86,1078 +20 10084653 . T . . END=10084672 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:99:39:0,104,1153 +20 10084673 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:97:38:0,97,1042 +20 10084674 . T . . END=10084760 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:37:0,105,1159 +20 10084761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:94:39:0,94,1170 +20 10084762 . G . . END=10084780 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,103,1193 +20 10084781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:91:38:0,91,1172 +20 10084782 . C . . END=10084818 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,99,1169 +20 10084819 . C . . END=10084827 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:90:34:0,90,1350 +20 10084828 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10084829 . C . . END=10084833 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1350 +20 10084834 . C . . END=10084838 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:80:33:0,80,1011 +20 10084839 . T . . END=10084840 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:78:32:0,78,1170 +20 10084841 . T . . END=10084848 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:81:29:0,81,1215 +20 10084849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:53:29:0,53,878 +20 10084850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:87:30:0,87,1305 +20 10084851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:31:0,90,1350 +20 10084852 . T . . END=10084853 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:81:31:0,81,984 +20 10084854 . T . . END=10084863 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:31:0,90,1350 +20 10084864 . A . . END=10084871 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:81:31:0,81,980 +20 10084872 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:78:33:0,78,1009 +20 10084873 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:87:33:0,87,1305 +20 10084874 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10084875 . A . . END=10084883 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:82:30:0,82,1011 +20 10084884 . T . . END=10084896 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:30:0,90,874 +20 10084897 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,1003 +20 10084898 . C . . END=10084902 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:93:34:0,93,1395 +20 10084903 . C . . END=10084905 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1485 +20 10084906 . C . . END=10084915 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1350 +20 10084916 . G . . END=10084921 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1485 +20 10084922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:95:39:0,95,1146 +20 10084923 . G . . END=10085053 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:99:40:0,99,1192 +20 10085054 . A G, . . DP=79;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:0,41,0:41:99:.:1236,123,0,1236,123,1236:0,0,22,19 +20 10085055 . A . . END=10085162 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:40:0,105,1230 +20 10085163 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:97:43:0,97,1221 +20 10085164 . A . . END=10085205 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:99:38:0,99,1207 +20 10085206 . C . . END=10085210 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:90:38:0,90,1350 +20 10085211 . A T, . . BaseQRankSum=-1.501e+00;DP=114;ExcessHet=3.01;MQRankSum=-1.028e+00;RAW_MQandDP=270841,76;ReadPosRankSum=-1.405e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,36,0:76:99:.:1239,0,1443,1360,1551,2911:21,19,17,19 ./.:.:39:90:38:0,90,1350,90,1350,1350 +20 10085212 . G . . END=10085215 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:90:38:0,90,1350 +20 10085216 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:85:36:0,85,1149 +20 10085217 . T . . END=10085221 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:96:34:0,96,1440 +20 10085222 . G . . END=10085228 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10085229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:96:34:0,96,1440 +20 10085230 . T . . END=10085246 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:33:0,99,1041 +20 10085247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:91:38:0,91,1164 +20 10085248 . T . . END=10085319 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:99:38:0,104,1188 +20 10085320 . C T, . . DP=95;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:54:0,120,1800,120,1800,1800 ./.:0,40,0:40:99:.:1269,120,0,1269,120,1269:0,0,22,18 +20 10085321 . A . . END=10085401 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:37:0,99,1185 +20 10085402 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:82:38:0,82,1103 +20 10085403 . G . . END=10085422 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:99:37:0,99,1158 +20 10085423 . T . . END=10085428 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:96:35:0,96,1440 +20 10085429 . A . . END=10085431 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10085432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:93:36:0,93,1395 +20 10085433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:85:35:0,85,1073 +20 10085434 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:96:35:0,96,1440 +20 10085435 . T . . END=10085494 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:37:0,102,1184 +20 10085495 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:97:43:0,97,1266 +20 10085496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:99:43:0,100,1366 +20 10085497 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:97:42:0,97,1288 +20 10085498 . G . . END=10085499 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:84:41:0,84,1223 +20 10085500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:97:42:0,97,1287 +20 10085501 . C . . END=10085502 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:39:0,116,1143 +20 10085503 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:89:40:0,89,1202 +20 10085504 . A . . END=10085506 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,107,1191 +20 10085507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:93:41:0,93,1251 +20 10085508 . A . . END=10085510 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:38:0,112,1230 +20 10085511 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:94:41:0,94,1211 +20 10085512 . G . . END=10085514 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,111,1665 +20 10085515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:77:38:0,77,1122 +20 10085516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:93:40:0,93,1153 +20 10085517 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:41:0,111,1665 +20 10085518 . G . . END=10085519 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:90:40:0,90,1171 +20 10085520 . C . . END=10085859 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:49:99:37:0,99,1160 +20 10085860 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:92:37:0,92,1155 +20 10085861 . T . . END=10085871 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:37:0,102,1530 +20 10085872 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:95:37:0,95,1155 +20 10085873 . A . . END=10085879 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:36:0,99,1129 +20 10085880 . T . . END=10085884 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:93:37:0,93,1395 +20 10085885 . T . . END=10085895 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:33:0,99,1064 +20 10085896 . A . . END=10085905 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:92:34:0,92,1075 +20 10085906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,102,1530 +20 10085907 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:87:35:0,87,1053 +20 10085908 . C . . END=10085917 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:93:33:0,93,1075 +20 10085918 . A . . END=10085921 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:34:0,99,1485 +20 10085922 . T . . END=10085923 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:93:35:0,93,1395 +20 10085924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10085925 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:96:36:0,96,1104 +20 10085926 . A . . END=10085955 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:35:0,99,1485 +20 10085956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:87:37:0,87,1094 +20 10085957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:37:0,108,1620 +20 10085958 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:94:37:0,94,1066 +20 10085959 . G . . END=10085960 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:99:37:0,108,1620 +20 10085961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:92:36:0,92,1095 +20 10085962 . G . . END=10086002 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:99:37:0,108,1119 +20 10086003 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:93:41:0,93,1167 +20 10086004 . C . . END=10086063 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:38:0,102,1155 +20 10086064 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:94:40:0,94,1152 +20 10086065 . C . . END=10086068 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,102,1183 +20 10086069 . A . . END=10086070 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:96:39:0,96,1440 +20 10086071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:40:0,99,1485 +20 10086072 . A . . END=10086074 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:96:38:0,96,1440 +20 10086075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:99:39:0,99,1485 +20 10086076 . A . . END=10086080 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:96:35:0,96,1440 +20 10086081 . T . . END=10086082 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:35:0,99,1485 +20 10086083 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:71:35:0,71,1007 +20 10086084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:89:35:0,89,1076 +20 10086085 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10086086 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:72:35:0,72,1049 +20 10086087 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:64:36:0,64,1029 +20 10086088 . A . . END=10086091 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:72:35:0,72,1005 +20 10086092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10086093 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:75:36:0,75,1008 +20 10086094 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:69:34:0,69,992 +20 10086095 . A . . END=10086101 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:72:35:0,72,971 +20 10086102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:53:35:0,53,923 +20 10086103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:72:35:0,72,984 +20 10086104 . A . . END=10086105 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:81:34:0,81,1215 +20 10086106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:69:34:0,69,997 +20 10086107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:71:34:0,71,1016 +20 10086108 . A . . END=10086109 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:33:60:31:0,60,925 +20 10086110 . G A, . . BaseQRankSum=-3.430e-01;DP=108;ExcessHet=3.01;MQRankSum=-6.800e-01;RAW_MQandDP=380523,108;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL:SB ./.:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 ./.:0,27,0:27:81:868,81,0,868,81,868:0,0,14,13 +20 10086111 . C . . END=10086114 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:63:32:0,63,899 +20 10086115 . A . . END=10086117 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:81:32:0,81,1215 +20 10086118 . A . . END=10086120 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:63:31:0,63,924 +20 10086121 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:31:27:31:0,27,784 +20 10086122 . A . . END=10086123 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:87:30:0,87,1305 +20 10086124 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:78:30:0,78,873 +20 10086125 . A . . END=10086132 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:81:28:0,81,1215 +20 10086133 . G . . END=10086141 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:29:76:28:0,76,879 +20 10086142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:81:28:0,81,1215 +20 10086143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:73:28:0,73,837 +20 10086144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:50:28:0,50,791 +20 10086145 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:78:28:0,78,1170 +20 10086146 . C . . END=10086147 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10086148 . A . . END=10086149 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:93:33:0,93,1395 +20 10086150 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:64:33:0,64,937 +20 10086151 . A . . END=10086154 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10086155 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:86:34:0,86,991 +20 10086156 . A . . END=10086160 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:91:33:0,91,1054 +20 10086161 . A . . END=10086162 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:87:35:0,87,1305 +20 10086163 . A . . END=10086170 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:90:33:0,90,1350 +20 10086171 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:73:33:0,73,926 +20 10086172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:68:32:0,68,901 +20 10086173 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:83:32:0,83,946 +20 10086174 . C . . END=10086177 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:30:0,90,899 +20 10086178 . A . . END=10086181 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:85:30:0,85,929 +20 10086182 . G . . END=10086190 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:30:0,90,884 +20 10086191 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:75:32:0,75,968 +20 10086192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:82:32:0,82,974 +20 10086193 . G . . END=10086196 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10086197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:31:78:31:0,78,915 +20 10086198 . T . . END=10086201 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10086202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:84:33:0,84,991 +20 10086203 . T . . END=10086204 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:99:33:0,99,1027 +20 10086205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:88:33:0,88,1001 +20 10086206 . C . . END=10086207 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:99:33:0,99,1010 +20 10086208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:90:34:0,90,1036 +20 10086209 . T . . END=10086210 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:36:97:36:0,97,1048 +20 10086212 . T . . END=10086232 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:39:99:34:0,102,1043 +20 10086233 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:96:38:0,96,1083 +20 10086234 . C . . END=10086260 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:99:36:0,99,1084 +20 10086261 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:98:38:0,98,1105 +20 10086262 . T . . END=10086269 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:37:99:34:0,99,998 +20 10086270 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:96:32:0,96,893 +20 10086271 . A . . END=10086282 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:99:36:0,102,1102 +20 10086283 . G T, . . BaseQRankSum=2.30;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=442800,123;ReadPosRankSum=1.89 GT:AD:DP:GQ:PL:SB ./.:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 ./.:1,37,0:38:99:1096,104,0,1098,111,1105:1,0,20,17 +20 10086284 . G . . END=10086293 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:38:99:37:0,99,1082 +20 10086294 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:90:39:0,90,1125 +20 10086295 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:99:39:0,99,1485 +20 10086296 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:90:39:0,90,1106 +20 10086297 . A . . END=10086303 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:99:35:0,99,1485 +20 10086304 . A . . END=10086306 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:93:34:0,93,1395 +20 10086307 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:87:35:0,87,1305 +20 10086308 . T . . END=10086309 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:90:36:0,90,1350 +20 10086310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:74:35:0,74,954 +20 10086311 . A . . END=10086317 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:90:33:0,90,1350 +20 10086318 . T . . END=10086323 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:33:99:33:0,99,1026 +20 10086324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:95:36:0,95,1103 +20 10086325 . A . . END=10086337 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:99:37:0,102,1235 +20 10086338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:43:88:43:0,88,1225 +20 10086339 . T . . END=10086369 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:46:99:41:0,108,1268 +20 10086370 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:41:91:41:0,91,1176 +20 10086371 . G . . END=10086618 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:48:99:36:0,99,1127 +20 10086619 . T A, . . BaseQRankSum=0.256;DP=106;ExcessHet=3.01;MQRankSum=-1.312e+00;RAW_MQandDP=249241,70;ReadPosRankSum=-7.600e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,25,0:70:99:.:825,0,1603,961,1679,2639:18,27,9,16 ./.:.:48:99:36:0,99,1127,99,1127,1127 +20 10086620 . T . . END=10086846 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:48:99:36:0,99,1127 +20 10086847 . G T, . . BaseQRankSum=-2.161e+00;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.993 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:81:99:65:.:.:0,120,1800,120,1800,1800 ./.:33,2,0:35:84:.:0|1:10086847_G_T:0,84,922,98,927,941:16,17,2,0 +20 10086848 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:36:99:36:0,102,1530 +20 10086849 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:36:60:36:0,60,975 +20 10086850 . A . . END=10086852 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:35:96:33:0,96,1440 +20 10086853 . G A, . . BaseQRankSum=3.92;DP=106;ExcessHet=3.01;MQRankSum=-1.770e-01;RAW_MQandDP=376610,106;ReadPosRankSum=-1.000e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:41,32,0:73:99:.:.:1031,0,1280,1154,1376,2530:21,20,17,15 ./.:0,33,0:33:99:0|1:10086847_G_T:1052,99,0,1052,99,1052:0,0,17,16 +20 10086854 . T . . END=10086857 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:90:33:0,90,1010 +20 10086858 . T . . END=10086864 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10086865 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:75:35:0,75,988 +20 10086866 . A . . END=10086884 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:38:99:35:0,99,1032 +20 10086885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:82:40:0,82,1109 +20 10086886 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:99:40:0,117,1755 +20 10086887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:86:40:0,86,1028 +20 10086888 . G . . END=10086925 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:39:99:36:0,104,1121 +20 10086926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:38:77:38:0,77,978 +20 10086927 . C . . END=10086931 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:39:99:37:0,102,1530 +20 10086932 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:37:98:37:0,98,1055 +20 10086933 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10086934 . T . . END=10086945 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:37:93:33:0,93,976 +20 10086946 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:88:35:0,88,1025 +20 10086947 . G . . END=10086950 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:90:30:0,90,909 +20 10086951 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:32:96:32:0,96,991 +20 10086953 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086954 . G A, . . BaseQRankSum=2.61;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=363600,101;ReadPosRankSum=-5.340e-01 GT:AD:DP:GQ:PL:SB ./.:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 ./.:0,31,0:31:92:919,92,0,919,92,919:0,0,10,21 +20 10086955 . C . . END=10086956 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10086957 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:91:37:0,91,1044 +20 10086958 . G . . END=10086989 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:41:99:36:0,102,1144 +20 10086990 . A . . END=10086991 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:85:37:0,85,1057 +20 10086992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:99:38:0,108,1620 +20 10086993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:97:38:0,97,1148 +20 10086994 . T . . END=10086999 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10087000 . C . . END=10087011 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:90:31:0,90,1350 +20 10087012 . A . . END=10087016 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10087017 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10087018 . G . . END=10087021 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:87:32:0,87,1305 +20 10087022 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:78:30:0,78,910 +20 10087023 . T . . END=10087039 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087040 . T . . END=10087053 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:30:0,90,932 +20 10087054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:74:31:0,74,936 +20 10087055 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:81:31:0,81,944 +20 10087056 . A . . END=10087063 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:30:0,90,970 +20 10087064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:89:35:0,89,1062 +20 10087065 . T . . END=10087066 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:96:34:0,96,1440 +20 10087067 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:73:33:0,73,978 +20 10087068 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10087069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:64:32:0,64,945 +20 10087070 . A . . END=10087077 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:32:0,90,1014 +20 10087078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087079 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:91:34:0,91,1035 +20 10087080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:84:33:0,84,967 +20 10087081 . A . . END=10087092 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10087093 . A . . END=10087094 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:87:32:0,87,1305 +20 10087095 . C . . END=10087106 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:75:30:0,75,895 +20 10087107 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:57:30:0,57,880 +20 10087108 . A . . END=10087110 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:72:27:0,72,1080 +20 10087111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:69:27:0,69,1035 +20 10087112 . C . . END=10087119 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:72:26:0,72,838 +20 10087120 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:64:27:0,64,760 +20 10087121 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:75:26:0,75,1125 +20 10087122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:66:26:0,66,748 +20 10087123 . T . . END=10087131 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:72:25:0,72,737 +20 10087132 . T . . END=10087135 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:28:81:28:0,81,848 +20 10087136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:72:29:0,72,865 +20 10087137 . T . . END=10087138 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:84:29:0,84,1260 +20 10087139 . C . . END=10087140 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:62:28:0,62,852 +20 10087141 . T . . END=10087142 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10087143 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:61:29:0,61,879 +20 10087144 . A . . END=10087155 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:81:27:0,81,846 +20 10087156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:77:30:0,77,933 +20 10087157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:93:31:0,93,964 +20 10087158 . T . . END=10087164 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:84:30:0,84,1260 +20 10087165 . G . . END=10087168 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:31:0,90,1350 +20 10087169 . A . . END=10087173 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:84:32:0,84,1260 +20 10087174 . A . . END=10087175 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:32:0,90,1350 +20 10087176 . C . . END=10087179 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:83:31:0,83,1014 +20 10087180 . C . . END=10087186 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:30:0,90,940 +20 10087187 . A . . END=10087194 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:87:29:0,87,921 +20 10087195 . G . . END=10087196 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10087197 . A . . END=10087201 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:81:32:0,81,968 +20 10087202 . T . . END=10087210 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10087211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:70:32:0,70,999 +20 10087212 . T . . END=10087216 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10087217 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10087218 . C . . END=10087219 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:93:31:0,93,1002 +20 10087220 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:85:34:0,85,1057 +20 10087221 . C . . END=10087222 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:99:34:0,99,1128 +20 10087223 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:36:87:36:0,87,1080 +20 10087224 . T . . END=10087225 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10087226 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:94:37:0,94,1133 +20 10087227 . T . . END=10087229 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:36:99:36:0,102,1530 +20 10087230 . A G, . . BaseQRankSum=-1.427e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.01;MQRankSum=1.71;RAW_MQandDP=455261,130;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL:SB ./.:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 ./.:1,33,0:34:66:957,66,0,960,97,992:1,0,17,16 +20 10087231 . C . . END=10087393 GT:DP:GQ:MIN_DP:PL ./.:101:99:84:0,120,1800 ./.:46:99:38:0,99,1150 +20 10087394 . T G, . . BaseQRankSum=-2.340e+00;DP=122;ExcessHet=3.01;MQRankSum=1.21;RAW_MQandDP=299641,84;ReadPosRankSum=0.885 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,49,0:84:99:.:1717,0,1186,1823,1334,3156:21,14,24,25 ./.:.:46:99:38:0,99,1150,99,1150,1150 +20 10087395 . T . . END=10087438 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:38:0,99,1150 +20 10087439 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:44:93:44:0,93,1266 +20 10087440 . T . . END=10087450 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:47:99:44:0,106,1300 +20 10087451 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:45:89:45:0,89,1335 +20 10087452 . A . . END=10087572 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:40:0,101,1289 +20 10087573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:47:91:47:0,91,1238 +20 10087574 . G . . END=10087627 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:40:0,111,1665 +20 10087628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:42:93:42:0,93,1220 +20 10087629 . C . . END=10087662 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:40:99:38:0,102,1187 +20 10087663 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:97:37:0,97,1129 +20 10087664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:99:37:0,102,1530 +20 10087665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:93:37:0,93,1143 +20 10087666 . G . . END=10087673 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:99:34:0,102,968 +20 10087674 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:94:35:0,94,1049 +20 10087675 . C . . END=10087679 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087680 . A . . END=10087683 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:81:35:0,81,1215 +20 10087684 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:73:35:0,73,1032 +20 10087685 . A . . END=10087689 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:34:81:33:0,81,1215 +20 10087690 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:33:78:33:0,78,1007 +20 10087691 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:29:0,81,1215 +20 10087692 . T . . END=10087701 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:27:75:25:0,75,761 +20 10087702 . T . . END=10087709 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:28:0,81,1215 +20 10087710 . C . . END=10087712 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:78:29:0,78,1170 +20 10087713 . A . . END=10087714 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:33:84:32:0,84,1260 +20 10087715 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:31:68:31:0,68,964 +20 10087716 . T . . END=10087725 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087726 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:71:30:0,71,869 +20 10087727 . T . . END=10087731 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087732 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:75:29:0,75,1125 +20 10087733 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:49:29:0,49,772 +20 10087734 . T . . END=10087742 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:27:72:27:0,72,1080 +20 10087743 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:26:60:26:0,60,763 +20 10087744 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:26:75:26:0,75,1125 +20 10087745 . G . . END=10087750 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:28:0,81,822 +20 10087751 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:90:30:0,90,872 +20 10087752 . G . . END=10087753 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:87:29:0,87,856 +20 10087754 . T G, . . BaseQRankSum=0.355;DP=110;ExcessHet=3.01;MQRankSum=2.19;RAW_MQandDP=288141,79;ReadPosRankSum=-5.510e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,41,0:78:99:.:1376,0,1239,1488,1362,2849:23,14,24,17 ./.:.:31:90:31:0,90,1350,90,1350,1350 +20 10087755 . G . . END=10087757 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:31:90:31:0,90,1350 +20 10087758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:34:99:34:0,99,1485 +20 10087759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:34:56:34:0,56,951 +20 10087760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:34:93:34:0,93,1395 +20 10087761 . A . . END=10087762 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:76:36:0,76,988 +20 10087763 . A . . END=10087764 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:96:37:0,96,1440 +20 10087765 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:99:38:0,99,1485 +20 10087766 . T . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:67:37:0,67,982 +20 10087767 . T . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:93:38:0,93,1395 +20 10087768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:40:99:40:0,99,1485 +20 10087769 . A . . END=10087776 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:90:37:0,90,1350 +20 10087777 . T . . END=10087781 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:81:36:0,81,1114 +20 10087782 . A . . END=10087783 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:39:72:39:0,72,1080 +20 10087784 . G . . END=10087791 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:39:60:36:0,60,900 +20 10087792 . G . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:57:38:0,57,855 +20 10087793 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:54:38:0,54,810 +20 10087794 . C . . END=10087797 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:51:37:0,51,765 +20 10087798 . A . . END=10087799 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:48:37:0,48,720 +20 10087800 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:42:37:0,42,630 +20 10087801 . T . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:39:37:0,39,585 +20 10087802 . G . . END=10087803 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:36:36:35:0,36,540 +20 10087804 . C T, . . BaseQRankSum=1.94;DP=132;ExcessHet=3.01;MQRankSum=2.62;RAW_MQandDP=491010,132;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL:SB ./.:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 ./.:0,32,0:32:94:882,94,0,882,94,882:0,0,23,9 +20 10087805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:36:33:36:0,33,495 +20 10087806 . G . . END=10087810 GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:36:24:36:0,24,360 +20 10087811 . A . . END=10087814 GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:36:12:36:0,12,180 +20 10087815 . A . . END=10087819 GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:37:3:37:0,3,45 +20 10087820 . CAG CAGAGAG,C,CAGAG, . . BaseQRankSum=-1.974e+00;DP=133;ExcessHet=3.01;MQRankSum=0.422;RAW_MQandDP=492900,133;ReadPosRankSum=-3.570e-01 GT:AD:DP:GQ:PL:SB ./.:35,0,0,18,0:53:99:466,661,2189,669,2237,2577,0,1238,1197,1168,661,2189,2237,1238,2189:17,18,8,10 ./.:0,32,0,0,0:32:96:1428,96,0,1428,96,1428,1428,96,1428,1428,1428,96,1428,1428,1428:0,0,21,11 +20 10087821 . A *, . . DP=134 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,0,0:53:99:.:466,669,2577,661,2237,2189:17,18,8,10 ./.:.:35:0:35:0,0,0,0,0,0 +20 10087822 . G *, . . DP=134 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,0,0:53:99:.:466,669,2577,661,2237,2189:17,18,8,10 ./.:.:35:72:35:0,72,995,72,995,995 +20 10087823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:72:35:0,72,995 +20 10087824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087825 . A . . END=10087826 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:72:35:0,72,1027 +20 10087827 . A . . END=10087832 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:99:35:0,102,1530 +20 10087833 . A . . END=10087834 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:36:90:35:0,90,1350 +20 10087835 . A . . END=10087836 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:36:83:36:0,83,1046 +20 10087837 . A . . END=10087840 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:36:93:35:0,93,1395 +20 10087841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:38:99:38:0,99,1485 +20 10087842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:0:82:0,0,2206 ./.:36:95:36:0,95,1055 +20 10087843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:73:82:0,73,2973 ./.:37:87:36:0,87,1305 +20 10087844 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:0:80:0,0,2190 ./.:37:87:36:0,87,1305 +20 10087845 . A . . END=10087846 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:37:87:36:0,87,1305 +20 10087847 . A . . END=10087860 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:90:34:0,90,1350 +20 10087861 . C . . END=10087865 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:33:83:32:0,83,871 +20 10087866 . C . . END=10087869 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:34:90:33:0,90,1350 +20 10087870 . A . . END=10087871 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:36:99:36:0,99,1485 +20 10087872 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:35:88:35:0,88,1036 +20 10087873 . A . . END=10087877 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:36:99:33:0,99,965 +20 10087878 . T . . END=10087879 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:35:84:34:0,84,860 +20 10087880 . C . . END=10087886 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:37:0,108,1620 +20 10087887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:76:41:0,76,1114 +20 10087888 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:41:0,106,1200 +20 10087889 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:60:39:0,60,932 +20 10087890 . A . . END=10087899 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:37:0,101,1079 +20 10087900 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:84:38:0,84,1053 +20 10087901 . G . . END=10087909 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:37:0,103,1190 +20 10087910 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:98:39:0,98,1045 +20 10087911 . A . . END=10087913 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:99:37:0,100,1142 +20 10087914 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:96:38:0,96,1096 +20 10087915 . C . . END=10087917 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:38:0,111,1665 +20 10087918 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:59:40:0,59,1086 +20 10087919 . A . . END=10087922 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:99:39:0,99,1150 +20 10087923 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:63:39:0,63,1069 +20 10087924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:90:38:0,90,1133 +20 10087925 . A . . END=10087940 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:37:0,103,1118 +20 10087941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:46:84:46:0,84,1209 +20 10087942 . T . . END=10088062 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:51:99:46:0,120,1800 +20 10088063 . C T, . . BaseQRankSum=3.41;DP=140;ExcessHet=3.01;MQRankSum=0.515;RAW_MQandDP=496779,140;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL:SB ./.:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 ./.:0,42,0:42:99:1307,125,0,1307,125,1307:0,0,16,26 +20 10088064 . G . . END=10088077 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:46:99:44:0,111,1444 +20 10088078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:44:98:44:0,98,1353 +20 10088079 . C . . END=10088116 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:38:99:34:0,99,1085 +20 10088117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:36:80:36:0,80,1094 +20 10088118 . A . . END=10088309 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:46:99:38:0,102,1194 +20 10088310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:92:42:0,92,1224 +20 10088311 . A . . END=10088337 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:39:0,102,1056 +20 10088338 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:38:97:38:0,97,1102 +20 10088339 . A . . END=10088358 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:99:36:0,99,1019 +20 10088359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:37:98:37:0,98,1093 +20 10088360 . A . . END=10088381 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:41:99:35:0,99,1092 +20 10088382 . A . . END=10088396 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:33:0,90,1061 +20 10088397 . A . . END=10088402 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:82:33:0,82,1012 +20 10088403 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:65:33:0,65,1001 +20 10088404 . A . . END=10088406 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:81:31:0,81,1215 +20 10088407 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:77:32:0,77,950 +20 10088408 . C . . END=10088410 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:31:0,81,1215 +20 10088411 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:78:30:0,78,934 +20 10088412 . A . . END=10088417 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:84:28:0,84,862 +20 10088418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:57:30:0,57,865 +20 10088419 . A . . END=10088423 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:81:29:0,81,909 +20 10088424 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:78:30:0,78,886 +20 10088425 . C . . END=10088427 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:31:0,81,1215 +20 10088428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:78:31:0,78,968 +20 10088429 . A . . END=10088431 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:30:0,81,1215 +20 10088432 . A . . END=10088434 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:78:29:0,78,1170 +20 10088435 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:28:67:28:0,67,772 +20 10088436 . T . . END=10088444 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:29:0,81,1215 +20 10088445 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:58:30:0,58,860 +20 10088446 . A . . END=10088450 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:81:29:0,81,942 +20 10088451 . A . . END=10088458 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:90:31:0,90,946 +20 10088459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:80:32:0,80,962 +20 10088460 . A . . END=10088464 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:93:32:0,93,1395 +20 10088465 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:87:32:0,87,1305 +20 10088466 . A . . END=10088469 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:90:32:0,90,1350 +20 10088470 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:79:33:0,79,1007 +20 10088471 . C . . END=10088472 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:34:0,93,1395 +20 10088473 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:88:35:0,88,1036 +20 10088474 . G . . END=10088479 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:31:0,93,1008 +20 10088480 . T . . END=10088481 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088482 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:96:34:0,96,1440 +20 10088483 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:85:33:0,85,940 +20 10088484 . T . . END=10088485 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:96:32:0,96,1075 +20 10088486 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088487 . A . . END=10088491 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10088492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:84:34:0,84,952 +20 10088493 . A . . END=10088497 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:34:0,90,1350 +20 10088498 . T . . END=10088502 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:82:30:0,82,930 +20 10088503 . A . . END=10088504 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:90:32:0,90,992 +20 10088505 . T . . END=10088507 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:34:0,99,1485 +20 10088508 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:77:35:0,77,1052 +20 10088509 . T . . END=10088511 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:34:0,93,1395 +20 10088512 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:87:34:0,87,1054 +20 10088513 . A . . END=10088517 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10088518 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:82:33:0,82,966 +20 10088519 . A . . END=10088533 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:90:31:0,90,955 +20 10088534 . G . . END=10088535 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088536 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:87:34:0,87,980 +20 10088537 . C . . END=10088541 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:34:0,102,1061 +20 10088542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:96:32:0,96,1032 +20 10088543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:99:33:0,99,980 +20 10088544 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:86:34:0,86,938 +20 10088545 . T . . END=10088546 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10088547 . G . . END=10088549 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:35:0,90,1350 +20 10088550 . A . . END=10088598 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:99:37:0,99,1157 +20 10088599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:87:40:0,87,1113 +20 10088600 . C . . END=10088601 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:41:0,120,1800 +20 10088602 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:41:96:41:0,96,1135 +20 10088603 . A . . END=10088605 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:41:0,120,1800 +20 10088606 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:92:40:0,92,1165 +20 10088607 . G . . END=10088647 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:43:99:42:0,99,1120 +20 10088648 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:44:82:44:0,82,1206 +20 10088649 . C . . END=10088698 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:51:99:45:0,117,1316 +20 10088699 . C T, . . BaseQRankSum=3.80;DP=113;ExcessHet=3.01;MQRankSum=-3.140e+00;RAW_MQandDP=378442,113;ReadPosRankSum=-1.456e+00 GT:AD:DP:GQ:PL:SB ./.:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 ./.:0,45,0:45:99:1405,135,0,1405,135,1405:0,0,24,21 +20 10088700 . G . . END=10088718 GT:DP:GQ:MIN_DP:PL ./.:53:99:51:0,120,1800 ./.:46:99:44:0,99,1303 +20 10088719 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:51:0,120,1800 ./.:44:78:44:0,78,1193 +20 10088720 . C . . END=10088729 GT:DP:GQ:MIN_DP:PL ./.:53:99:51:0,120,1800 ./.:44:99:43:0,100,1277 +20 10088730 . G A, . . BaseQRankSum=0.224;DP=94;ExcessHet=3.01;MQRankSum=-4.839e+00;RAW_MQandDP=298262,94;ReadPosRankSum=0.581 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 ./.:0,41,0:41:99:0|1:10088730_G_A:1825,123,0,1825,123,1825:0,0,23,18 +20 10088731 . G . . END=10088735 GT:DP:GQ:MIN_DP:PL ./.:55:99:55:0,120,1800 ./.:43:99:42:0,108,1292 +20 10088736 . A C, . . BaseQRankSum=0.282;DP=99;ExcessHet=3.01;MQRankSum=-5.169e+00;RAW_MQandDP=306786,99;ReadPosRankSum=0.573 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 ./.:0,43,0:43:99:0|1:10088730_G_A:1999,138,0,1999,138,1999:0,0,23,20 +20 10088737 . C . . END=10088746 GT:DP:GQ:MIN_DP:PL ./.:56:99:53:0,120,1800 ./.:46:99:45:0,120,1800 +20 10088747 . A G, . . BaseQRankSum=-3.877e+00;DP=103;ExcessHet=3.01;MQRankSum=-4.907e+00;RAW_MQandDP=317743,103;ReadPosRankSum=9.000e-03 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 ./.:0,47,0:47:99:0|1:10088730_G_A:2038,144,0,2038,144,2038:0,0,25,22 +20 10088748 . G . . END=10088780 GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:45:99:42:0,112,1329 +20 10088781 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:41:92:41:0,92,1212 +20 10088782 . T . . END=10088797 GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:41:99:39:0,99,1485 +20 10088798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:40:96:40:0,96,1440 +20 10088799 . G A, . . BaseQRankSum=5.50;DP=94;ExcessHet=3.01;MQRankSum=-2.498e+00;RAW_MQandDP=296344,94;ReadPosRankSum=1.08 GT:AD:DP:GQ:PL:SB ./.:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 ./.:0,40,0:40:99:1320,120,0,1320,120,1320:0,0,20,20 +20 10088800 . T . . END=10088802 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:39:93:39:0,93,1395 +20 10088803 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:41:99:41:0,99,1485 +20 10088804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:39:96:39:0,96,1440 +20 10088805 . A . . END=10088807 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:39:99:39:0,99,1485 +20 10088808 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:38:96:38:0,96,1440 +20 10088809 . A . . END=10088812 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:38:99:37:0,99,1485 +20 10088813 . T . . END=10088815 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:37:96:37:0,96,1440 +20 10088816 . A . . END=10088819 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:38:99:35:0,99,1485 +20 10088820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:35:96:35:0,96,1440 +20 10088821 . A . . END=10088831 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:37:99:34:0,99,1043 +20 10088832 . G . . END=10088842 GT:DP:GQ:MIN_DP:PL ./.:53:63:36:0,63,945 ./.:37:99:34:0,99,1043 +20 10088843 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:16:25:0,16,759 ./.:37:99:34:0,99,1043 +20 10088844 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:37:25:0,37,718 ./.:37:99:34:0,99,1043 +20 10088845 . C . . . GT:DP:GQ:MIN_DP:PL ./.:26:38:26:0,38,870 ./.:37:99:34:0,99,1043 +20 10088846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:60:25:0,60,900 ./.:37:99:34:0,99,1043 +20 10088847 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:51:25:0,51,870 ./.:37:99:34:0,99,1043 +20 10088848 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:63:25:0,63,945 ./.:37:99:34:0,99,1043 +20 10088849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:54:25:0,54,810 ./.:37:99:34:0,99,1043 +20 10088850 . A . . END=10088851 GT:DP:GQ:MIN_DP:PL ./.:26:57:26:0,57,855 ./.:37:99:34:0,99,1043 +20 10088852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:48:25:0,48,720 ./.:37:99:34:0,99,1043 +20 10088853 . C . . END=10088854 GT:DP:GQ:MIN_DP:PL ./.:26:51:26:0,51,765 ./.:37:99:34:0,99,1043 +20 10088855 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:25:0,57,855 ./.:37:99:34:0,99,1043 +20 10088856 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:25:0,57,855 ./.:34:96:33:0,96,1440 +20 10088857 . G . . END=10088860 GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:96:33:0,96,1440 +20 10088861 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:35:87:35:0,87,991 +20 10088862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:74:34:0,74,991 +20 10088863 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:96:34:0,96,1440 +20 10088864 . G . . END=10088865 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:35:99:33:0,99,990 +20 10088866 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:35:99:33:0,99,990 +20 10088867 . A . . END=10088870 GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:35:99:33:0,99,990 +20 10088871 . T . . END=10088875 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:35:99:33:0,99,990 +20 10088876 . C . . END=10088883 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:36:90:35:0,90,1053 +20 10088884 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:35:78:35:0,78,983 +20 10088885 . G . . END=10088887 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:34:81:31:0,81,886 +20 10088888 . G . . END=10088889 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:90:31:0,90,1350 +20 10088890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:31:87:31:0,87,1305 +20 10088891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:90:32:0,90,1350 +20 10088892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:87:32:0,87,1305 +20 10088893 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:33:90:33:0,90,1350 +20 10088894 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:33:87:33:0,87,1305 +20 10088895 . C T, . . BaseQRankSum=2.46;DP=74;ExcessHet=3.01;MQRankSum=0.577;RAW_MQandDP=251171,74;ReadPosRankSum=1.30 GT:AD:DP:GQ:PL:SB ./.:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 ./.:0,31,0:31:92:932,92,0,932,92,932:0,0,18,13 +20 10088896 . G . . END=10088903 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:33:80:29:0,80,790 +20 10088904 . G . . END=10088905 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:31:90:31:0,90,1350 +20 10088906 . G . . END=10088910 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:30:84:28:0,84,866 +20 10088911 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:31:60:31:0,60,858 +20 10088912 . A . . END=10088916 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:32:84:30:0,84,1260 +20 10088917 . G . . END=10088928 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:34:72:32:0,72,1080 +20 10088929 . C . . END=10088937 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:66:35:0,66,990 +20 10088938 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:57:39:0,57,1004 +20 10088939 . C . . END=10088940 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:60:40:0,60,900 +20 10088941 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:57:39:0,57,855 +20 10088942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:38:54:38:0,54,810 +20 10088943 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:51:39:0,51,765 +20 10088944 . C . . END=10088947 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:48:38:0,48,720 +20 10088948 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:42:39:42:0,39,585 +20 10088949 . T . . END=10088952 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:36:39:0,36,540 +20 10088953 . T . . END=10088956 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:43:39:42:0,39,585 +20 10088957 . C . . END=10088959 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:33:39:0,33,495 +20 10088960 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:30:39:0,30,450 +20 10088961 . A . . END=10088963 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:27:38:0,27,405 +20 10088964 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:37:30:37:0,30,450 +20 10088965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:41:27:41:0,27,405 +20 10088966 . C . . END=10088967 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:42:0:41:0,0,683 +20 10088968 . C CAAA, . . BaseQRankSum=0.552;DP=95;ExcessHet=3.01;MQRankSum=-4.750e+00;RAW_MQandDP=292450,95;ReadPosRankSum=2.42 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 ./.:0,30,0:30:99:0|1:10088968_C_CAAA:1781,128,0,1781,128,1781:0,0,18,12 +20 10088969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:70:0,120,1800 ./.:53:0:53:0,0,0 +20 10088970 . A . . END=10088979 GT:DP:GQ:MIN_DP:PL ./.:71:99:70:0,120,1800 ./.:54:99:53:0,120,1800 +20 10088980 . T C, . . BaseQRankSum=-1.585e+00;DP=113;ExcessHet=3.01;MQRankSum=-5.232e+00;RAW_MQandDP=332195,113;ReadPosRankSum=1.29 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 ./.:0,44,0:44:99:0|1:10088968_C_CAAA:1859,135,0,1859,135,1859:0,0,18,26 +20 10088981 . A . . END=10088982 GT:DP:GQ:MIN_DP:PL ./.:71:99:69:0,120,1800 ./.:54:99:54:0,120,1800 +20 10088983 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:69:0,120,1800 ./.:51:43:51:0,43,1358 +20 10088984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:69:0,120,1800 ./.:53:99:53:0,120,1800 +20 10088985 . T C, . . BaseQRankSum=-1.920e-01;DP=118;ExcessHet=3.01;MQRankSum=-5.248e+00;RAW_MQandDP=346085,118;ReadPosRankSum=1.23 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 ./.:0,43,0:43:99:.:.:1926,132,0,1926,132,1926:0,0,18,25 +20 10088986 . A . . END=10088989 GT:DP:GQ:MIN_DP:PL ./.:82:99:81:0,120,1800 ./.:52:99:49:0,110,1473 +20 10088990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:7:84:0,7,2771 ./.:52:99:49:0,110,1473 +20 10088991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:95:81:0,95,2703 ./.:52:99:49:0,110,1473 +20 10088992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:88:80:0,88,2845 ./.:52:99:49:0,110,1473 +20 10088993 . A . . END=10089025 GT:DP:GQ:MIN_DP:PL ./.:84:99:76:0,112,1800 ./.:52:99:49:0,110,1473 +20 10089026 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:0:74:0,0,2116 ./.:52:99:49:0,110,1473 +20 10089027 . A . . END=10089029 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,120,1800 ./.:52:99:49:0,110,1473 +20 10089030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:83:76:0,83,2254 ./.:51:89:51:0,89,1483 +20 10089031 . A . . END=10089036 GT:DP:GQ:MIN_DP:PL ./.:83:99:78:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089037 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:40:82:0,40,2255 ./.:50:99:46:0,103,1428 +20 10089038 . A . . END=10089042 GT:DP:GQ:MIN_DP:PL ./.:83:99:81:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:79:76:0,79,2231 ./.:50:99:46:0,103,1428 +20 10089044 . G . . END=10089074 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:45:88:45:0,88,1279 +20 10089076 . C . . END=10089147 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:99:41:0,101,1310 +20 10089148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:41:91:41:0,91,1207 +20 10089149 . A G, . . BaseQRankSum=1.75;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-4.740e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:82:99:74:0,120,1800,120,1800,1800 ./.:1,39,0:40:99:.:1137,108,0,1140,115,1147:0,1,24,15 +20 10089150 . A . . END=10089162 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:39:99:36:0,108,1146 +20 10089163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:42:93:42:0,93,1173 +20 10089164 . A . . END=10089180 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:99:41:0,120,1800 +20 10089181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:98:44:0,98,1273 +20 10089182 . A . . END=10089440 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:48:99:38:0,102,1104 +20 10089441 . A G, . . BaseQRankSum=-4.885e+00;DP=114;ExcessHet=3.01;MQRankSum=-9.480e-01;RAW_MQandDP=270841,76;ReadPosRankSum=-1.560e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,39,0:76:99:.:1208,0,1313,1319,1430,2749:19,18,14,25 ./.:.:48:99:38:0,102,1104,102,1104,1104 +20 10089442 . G . . END=10089524 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:48:99:38:0,102,1104 +20 10089525 . C T, . . BaseQRankSum=5.86;DP=124;ExcessHet=3.01;MQRankSum=1.53;RAW_MQandDP=441410,124;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL:SB ./.:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 ./.:0,43,0:43:99:1352,128,0,1352,128,1352:0,0,18,25 +20 10089526 . G . . END=10089650 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:49:99:46:0,103,1431 +20 10089651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:46:94:46:0,94,1299 +20 10089652 . A . . END=10089694 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:99:40:0,99,1155 +20 10089695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:97:42:0,97,1247 +20 10089696 . G . . END=10089703 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:99:42:0,110,1230 +20 10089704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:91:43:0,91,1197 +20 10089705 . T . . END=10089752 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:37:0,99,1077 +20 10089753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:97:42:0,97,1168 +20 10089754 . C . . END=10089820 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:47:99:41:0,99,1068 +20 10089821 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:45:87:45:0,87,1261 +20 10089822 . C . . END=10089861 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:44:99:42:0,111,1258 +20 10089862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:95:41:0,95,1201 +20 10089863 . A . . END=10089881 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:40:99:35:0,105,1111 +20 10089882 . G . . END=10089883 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:97:38:0,97,1100 +20 10089884 . T . . END=10089928 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:99:37:0,99,1147 +20 10089929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:37:95:37:0,95,1123 +20 10089930 . T . . END=10089932 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:99:37:0,108,1173 +20 10089933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:96:36:0,96,1104 +20 10089934 . G . . END=10089940 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:37:99:36:0,108,1099 +20 10089941 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:95:38:0,95,1057 +20 10089942 . A . . END=10089952 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:99:37:0,99,1485 +20 10089953 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:37:94:37:0,94,1095 +20 10089954 . A . . END=10089960 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:99:35:0,102,1530 +20 10089961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:35:94:35:0,94,1045 +20 10089962 . A . . END=10089975 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:35:99:35:0,99,1485 +20 10089976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:35:94:35:0,94,1033 +20 10089977 . C . . END=10089980 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:99:36:0,105,1124 +20 10089981 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:95:36:0,95,1107 +20 10089982 . G . . END=10089984 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:99:37:0,108,1620 +20 10089985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:91:41:0,91,1281 +20 10089986 . G . . END=10089994 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:41:0,100,1213 +20 10089995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:78:41:0,78,1122 +20 10089996 . G . . END=10090025 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:39:0,105,1276 +20 10090026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:88:39:0,88,1146 +20 10090027 . A . . END=10090044 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:99:35:0,105,1095 +20 10090045 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:96:36:0,96,1105 +20 10090046 . A . . END=10090060 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:38:0,105,1145 +20 10090061 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:40:86:40:0,86,1180 +20 10090062 . A . . END=10090243 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:54:99:38:0,101,1290 +20 10090244 . A . . END=10090246 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:48:93:47:0,93,1395 +20 10090247 . T . . END=10090256 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:46:81:40:0,81,1215 +20 10090257 . T . . END=10090259 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:44:72:44:0,72,1080 +20 10090260 . A . . END=10090266 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:45:60:43:0,60,900 +20 10090267 . A . . END=10090268 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:57:42:0,57,855 +20 10090269 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:54:43:0,54,810 +20 10090270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:51:43:0,51,765 +20 10090271 . G . . END=10090272 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:48:42:0,48,720 +20 10090273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:45:42:0,45,675 +20 10090274 . A . . END=10090275 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:33:42:0,33,495 +20 10090276 . A . . END=10090279 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:30:41:0,30,450 +20 10090280 . T . . END=10090281 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:27:40:0,27,405 +20 10090282 . A . . END=10090283 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:24:42:0,24,360 +20 10090284 . A . . END=10090285 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:15:42:0,15,225 +20 10090286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:12:39:0,12,180 +20 10090287 . G . . END=10090288 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:9:38:0,9,135 +20 10090289 . CAA C,CA, . . BaseQRankSum=0.441;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=1.39;RAW_MQandDP=424482,118;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL:SB ./.:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 ./.:1,29,0,0:30:66:1009,66,0,1012,88,1033,1012,88,1033,1033:0,1,12,17 +20 10090290 . A *, . . DP=118 GT:AD:DP:GQ:PL:SB ./.:14,20,0:38:99:422,0,230,477,348,928:7,7,11,13 ./.:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090291 . A *, . . DP=118 GT:AD:DP:GQ:PL:SB ./.:14,20,0:38:99:422,0,230,477,348,928:7,7,11,13 ./.:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:0:41:0,0,0 +20 10090293 . A . . END=10090297 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:41:0,102,1530 +20 10090298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:86:42:0,86,1250 +20 10090299 . A . . END=10090303 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:99:42:0,105,1250 +20 10090304 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:86:43:0,86,1261 +20 10090305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:96:43:0,96,1291 +20 10090306 . G . . END=10090307 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:81:41:0,81,1190 +20 10090308 . A . . END=10090465 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:51:99:41:0,99,1273 +20 10090466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:95:42:0,95,1329 +20 10090467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:86:43:0,86,1291 +20 10090468 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:97:43:0,97,1349 +20 10090469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:45:99:45:0,101,1379 +20 10090470 . G . . END=10090471 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:92:42:0,92,1230 +20 10090472 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:41:0,117,1755 +20 10090473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:93:42:0,93,1309 +20 10090474 . G . . END=10090475 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:86:40:0,86,1194 +20 10090476 . C . . END=10090477 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:99:38:0,100,1148 +20 10090478 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:86:40:0,86,1182 +20 10090479 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:75:40:0,75,1155 +20 10090480 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,102,1530 +20 10090481 . T . . END=10090482 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:91:41:0,91,1237 +20 10090483 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:88:41:0,88,1228 +20 10090484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,102,1530 +20 10090485 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:88:40:0,88,1247 +20 10090486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:73:36:0,73,1070 +20 10090487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:82:39:0,82,1145 +20 10090488 . C . . END=10090490 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:99:36:0,99,1485 +20 10090491 . G . . END=10090492 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:70:35:0,70,965 +20 10090493 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:34:67:34:0,67,1006 +20 10090494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:99:35:0,99,1485 +20 10090495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:71:35:0,71,1080 +20 10090496 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:56:35:0,56,1025 +20 10090497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:34:67:34:0,67,1022 +20 10090498 . C . . END=10090500 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:37:99:36:0,105,1575 +20 10090501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:79:38:0,79,1173 +20 10090502 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:99:38:0,108,1620 +20 10090503 . T . . END=10090505 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:76:37:0,76,1119 +20 10090506 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:37:80:37:0,80,1107 +20 10090507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:74:36:0,74,1071 +20 10090508 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:82:39:0,82,1160 +20 10090509 . C . . END=10090510 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:99:38:0,105,1575 +20 10090511 . A . . END=10090513 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:81:39:0,81,1156 +20 10090514 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:79:38:0,79,1175 +20 10090515 . C . . END=10090516 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:39:0,111,1665 +20 10090517 . A . . END=10090524 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:80:38:0,80,1130 +20 10090525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:55:42:0,55,1127 +20 10090526 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:89:43:0,89,1263 +20 10090527 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:95:43:0,95,1298 +20 10090528 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:77:42:0,77,1199 +20 10090529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:92:42:0,92,1248 +20 10090530 . C . . END=10090532 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:99:42:0,114,1710 +20 10090533 . A . . END=10090535 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:94:43:0,94,1291 +20 10090536 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:89:41:0,89,1245 +20 10090537 . C . . END=10090539 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:39:0,100,1317 +20 10090540 . A . . END=10090541 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:91:41:0,91,1185 +20 10090542 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:86:44:0,86,1243 +20 10090543 . C . . END=10090547 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,105,1575 +20 10090548 . G . . END=10090549 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:93:39:0,93,1135 +20 10090550 . A . . END=10090557 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:37:0,100,1131 +20 10090558 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:86:39:0,86,1099 +20 10090559 . C . . END=10090592 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:38:0,106,1142 +20 10090593 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:97:40:0,97,1225 +20 10090594 . C . . END=10090763 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:51:99:38:0,100,1169 +20 10090764 . A G, . . BaseQRankSum=-2.659e+00;DP=109;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=392400,109;ReadPosRankSum=1.21 GT:AD:DP:GQ:PL:SB ./.:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 ./.:0,45,0:45:99:1187,133,0,1187,133,1187:0,0,25,20 +20 10090765 . A . . END=10090885 GT:DP:GQ:MIN_DP:PL ./.:75:99:65:0,120,1800 ./.:52:99:45:0,116,1415 +20 10090886 . G A, . . BaseQRankSum=1.03;ClippingRankSum=0.00;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=201600,56;ReadPosRankSum=1.80 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:99:65:0,120,1800,120,1800,1800 ./.:5,51,0:56:48:.:1467,48,0,1481,152,1585:2,3,27,24 +20 10090887 . A . . END=10090969 GT:DP:GQ:MIN_DP:PL ./.:75:99:65:0,120,1800 ./.:53:99:44:0,113,1448 +20 10090970 . T C, . . BaseQRankSum=-4.840e-01;DP=113;ExcessHet=3.01;MQRankSum=1.51;RAW_MQandDP=243938,69;ReadPosRankSum=-7.200e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,36,0:69:99:.:1286,0,1092,1384,1201,2585:20,13,20,16 ./.:.:53:99:44:0,113,1448,113,1448,1448 +20 10090971 . C . . END=10091213 GT:DP:GQ:MIN_DP:PL ./.:61:99:49:0,120,1800 ./.:53:99:44:0,113,1448 +20 10091214 . C T, . . BaseQRankSum=0.361;DP=114;ExcessHet=3.01;MQRankSum=-9.160e-01;RAW_MQandDP=249769,70;ReadPosRankSum=-3.500e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,37,0:70:99:.:1278,0,1110,1377,1222,2599:11,22,13,24 ./.:.:53:99:44:0,113,1448,113,1448,1448 +20 10091215 . C . . END=10091219 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:53:99:44:0,113,1448 +20 10091220 . A G, . . DP=91;ExcessHet=3.01;RAW_MQandDP=162000,45 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:69:99:46:0,120,1800,120,1800,1800 ./.:0,44,0:44:99:.:1235,130,0,1235,130,1235:0,0,20,24 +20 10091221 . T . . END=10091324 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:99:43:0,101,1302 +20 10091325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:89:43:0,89,1252 +20 10091326 . G . . END=10091363 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1114 +20 10091364 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:87:40:0,87,1215 +20 10091365 . G . . END=10091537 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:99:38:0,105,1111 +20 10091538 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:92:40:0,92,1048 +20 10091539 . C . . END=10091564 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,99,1173 +20 10091565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:78:39:0,78,1132 +20 10091566 . G . . END=10091585 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,108,1620 +20 10091586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:97:39:0,97,1147 +20 10091587 . A . . END=10091617 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1141 +20 10091618 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:94:37:0,94,1159 +20 10091619 . C . . END=10091624 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,105,1163 +20 10091625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:98:38:0,98,1183 +20 10091626 . T . . END=10091662 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1188 +20 10091663 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:80:38:0,80,1111 +20 10091664 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:41:0,117,1755 +20 10091665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:90:41:0,90,1210 +20 10091666 . A . . END=10091744 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:35:0,105,1152 +20 10091745 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:79:35:0,79,1053 +20 10091746 . G . . END=10091797 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:42:99:33:0,99,1031 +20 10091798 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:85:40:0,85,1196 +20 10091799 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:40:0,114,1710 +20 10091800 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:97:40:0,97,1237 +20 10091801 . A . . END=10091820 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:39:0,105,1180 +20 10091821 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1242 +20 10091822 . A . . END=10091835 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,99,1485 +20 10091836 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1175 +20 10091837 . T . . END=10091838 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:38:0,99,1485 +20 10091839 . A . . END=10091843 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:93:37:0,93,1111 +20 10091844 . A . . END=10091861 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:36:99:34:0,99,1028 +20 10091862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:36:94:36:0,94,1028 +20 10091863 . C . . END=10091868 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,105,1138 +20 10091869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:97:38:0,97,1074 +20 10091870 . C . . END=10091907 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:99:40:0,99,1221 +20 10091908 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:98:47:0,98,1355 +20 10091909 . T . . END=10091931 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:41:0,103,1263 +20 10091932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:42:81:42:0,81,1185 +20 10091933 . T . . END=10092027 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:40:0,114,1239 +20 10092028 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:97:41:0,97,1239 +20 10092029 . C . . END=10092101 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:41:0,102,1213 +20 10092102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:83:47:0,83,1345 +20 10092103 . G . . END=10092130 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:40:0,108,1288 +20 10092131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1128 +20 10092132 . C . . END=10092160 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:37:0,100,1126 +20 10092161 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:89:41:0,89,1165 +20 10092162 . G . . END=10092165 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:39:0,108,1195 +20 10092166 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:91:40:0,91,1151 +20 10092167 . T . . END=10092179 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,101,1084 +20 10092180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:89:40:0,89,1148 +20 10092181 . T . . END=10092194 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:34:0,99,1485 +20 10092195 . T . . END=10092196 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:96:36:0,96,1440 +20 10092197 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:38:0,99,1485 +20 10092198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:90:37:0,90,1072 +20 10092199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:37:0,99,1485 +20 10092200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:90:37:0,90,1063 +20 10092201 . C . . END=10092202 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10092203 . C . . END=10092209 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:34:96:32:0,96,983 +20 10092210 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10092211 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10092212 . A . . END=10092216 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:37:0,103,1087 +20 10092217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:88:38:0,88,1143 +20 10092218 . T . . END=10092238 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:37:0,99,1113 +20 10092239 . A . . END=10092241 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:96:38:0,96,1440 +20 10092242 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:77:39:0,77,1093 +20 10092243 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:96:39:0,96,1440 +20 10092244 . C . . END=10092247 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:39:0,105,1157 +20 10092248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:98:39:0,98,1127 +20 10092249 . A . . END=10092260 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:36:0,103,1121 +20 10092261 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:94:39:0,94,1166 +20 10092262 . A . . END=10092288 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:38:0,102,1110 +20 10092289 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:97:43:0,97,1263 +20 10092290 . T . . END=10092414 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:54:99:39:0,108,1239 +20 10092415 . A G, . . BaseQRankSum=-6.731e+00;DP=140;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=363600,101;ReadPosRankSum=0.082 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:52,49,0:101:99:.:1664,0,1902,1820,2049,3870:27,25,24,25 ./.:.:54:99:39:0,108,1239,108,1239,1239 +20 10092416 . G . . END=10092641 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:54:99:39:0,108,1239 +20 10092642 . T C, . . DP=111;ExcessHet=3.01;RAW_MQandDP=183600,51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:60:0,120,1800,120,1800,1800 ./.:0,51,0:51:99:.:1428,151,0,1428,151,1428:0,0,26,25 +20 10092643 . G . . END=10092926 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:57:99:40:0,108,1608 +20 10092927 . G T, . . BaseQRankSum=-2.507e+00;DP=113;ExcessHet=3.01;MQRankSum=-3.009e+00;RAW_MQandDP=257282,73;ReadPosRankSum=-2.200e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:59,13,0:72:99:.:135,0,1864,310,1901,2211:43,16,0,13 ./.:.:57:99:40:0,108,1608,108,1608,1608 +20 10092928 . T . . END=10093049 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:57:99:40:0,108,1608 +20 10093050 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:91:40:0,91,1217 +20 10093051 . C . . END=10093108 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:99:35:0,99,1143 +20 10093109 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:79:35:0,79,1099 +20 10093110 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:99:35:0,102,1530 +20 10093111 . T . . END=10093123 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:90:32:0,90,1075 +20 10093124 . C . . END=10093125 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:32:87:32:0,87,1305 +20 10093126 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:33:90:33:0,90,1350 +20 10093127 . A . . END=10093128 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:33:84:33:0,84,1260 +20 10093129 . T . . END=10093132 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:90:34:0,90,1079 +20 10093133 . T . . END=10093138 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:36:99:34:0,99,1485 +20 10093139 . A . . END=10093144 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:93:34:0,93,1395 +20 10093145 . A . . END=10093229 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:43:99:37:0,99,1099 +20 10093230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:45:86:45:0,86,1332 +20 10093231 . C . . END=10093530 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:49:99:41:0,102,1306 +20 10093531 . C . . END=10093535 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:42:90:40:0,90,1350 +20 10093536 . C . . END=10093538 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:41:81:41:0,81,1215 +20 10093539 . A . . END=10093542 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:72:39:0,72,1080 +20 10093543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:41:66:41:0,66,990 +20 10093544 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:38:57:38:0,57,855 +20 10093545 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:48:40:0,48,720 +20 10093546 . A . . END=10093547 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:39:45:38:0,45,675 +20 10093548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:39:48:39:0,48,720 +20 10093549 . A . . END=10093550 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:38:45:37:0,45,675 +20 10093551 . G . . END=10093552 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:39:39:38:0,39,585 +20 10093553 . G . . END=10093557 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:24:37:0,24,360 +20 10093558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:21:37:0,21,315 +20 10093559 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:18:37:0,18,270 +20 10093560 . T . . END=10093562 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:15:36:0,15,225 +20 10093563 . G . . END=10093565 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:18:37:0,18,270 +20 10093566 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:38:12:38:0,12,180 +20 10093567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:9:37:0,9,135 +20 10093568 . GTT GTTTT,G,GT,GTTT, . . BaseQRankSum=0.426;DP=87;ExcessHet=3.01;MQRankSum=0.410;RAW_MQandDP=305661,87;ReadPosRankSum=1.26 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:17,0,4,17,4,0:42:99:.:.:364,431,885,329,838,1122,0,449,430,386,377,780,710,293,909,431,885,838,449,780,885:7,10,10,15 ./.:0,24,0,0,0,0:24:75:0|1:10093568_G_GTT:894,75,0,894,75,894,894,75,894,894,894,75,894,894,894,894,75,894,894,894,894:0,0,14,10 +20 10093569 . T *, . . DP=96 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:17,17,0:42:99:.:364,0,386,431,449,885:7,10,10,15 ./.:.:37:0:37:0,0,0,0,0,0 +20 10093570 . T *, . . DP=96 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:17,17,0:42:99:.:364,0,386,431,449,885:7,10,10,15 ./.:.:37:87:37:0,87,1305,87,1305,1305 +20 10093571 . T . . END=10093573 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:87:37:0,87,1305 +20 10093574 . T . . END=10093579 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:72:34:0,72,1080 +20 10093580 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:54:34:0,54,993 +20 10093581 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:33:14:33:0,14,864 +20 10093582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:33:47:33:0,47,848 +20 10093583 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:40:34:0,40,920 +20 10093584 . T G, . . BaseQRankSum=-2.073e+00;ClippingRankSum=0.00;DP=75;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=86400,24;ReadPosRankSum=1.05 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:62:99:51:.:.:0,99,1485,99,1485,1485 ./.:20,4,0:24:2:.:0|1:10093568_G_GTT:2,0,468,60,479,540:8,12,4,0 +20 10093585 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:72:35:0,72,1042 +20 10093586 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:84:32:0,84,1260 +20 10093587 . G . . END=10093589 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:75:30:0,75,904 +20 10093590 . T . . END=10093591 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:83:33:0,83,818 +20 10093592 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:57:31:0,57,762 +20 10093593 . T . . END=10093595 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:87:32:0,87,1305 +20 10093596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:30:56:30:0,56,745 +20 10093597 . T . . END=10093599 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:84:32:0,84,1260 +20 10093600 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:90:34:0,90,1350 +20 10093601 . G . . END=10093602 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:82:33:0,82,927 +20 10093603 . T . . END=10093605 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:93:37:0,93,1395 +20 10093606 . G . . END=10093610 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:84:34:0,84,884 +20 10093611 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:51:37:0,51,947 +20 10093612 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:39:84:39:0,84,1260 +20 10093613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:50:31:0,50,780 +20 10093614 . T . . END=10093623 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:81:30:0,81,1215 +20 10093624 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:90:32:0,90,1350 +20 10093625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:79:32:0,79,941 +20 10093626 . G . . END=10093627 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:96:34:0,96,1440 +20 10093628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:99:34:0,99,1485 +20 10093629 . T . . END=10093631 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:96:34:0,96,1071 +20 10093632 . C . . END=10093655 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:99:36:0,102,1110 +20 10093656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:95:37:0,95,1117 +20 10093657 . G . . END=10093744 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:45:99:35:0,103,1102 +20 10093745 . C . . END=10093746 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:42:96:42:0,96,1440 +20 10093747 . C . . END=10093748 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:41:99:39:0,99,1485 +20 10093749 . C . . END=10093751 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:41:96:39:0,96,1440 +20 10093752 . C . . END=10093753 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:40:99:39:0,102,1530 +20 10093754 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:96:38:0,96,1440 +20 10093755 . C . . END=10093829 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:47:99:38:0,102,1359 +20 10093830 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:42:93:42:0,93,1160 +20 10093831 . T . . END=10093839 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:44:99:42:0,115,1238 +20 10093840 . A . . END=10093841 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:45:95:45:0,95,1260 +20 10093842 . T . . END=10093915 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:47:99:38:0,101,1151 +20 10093916 . A . . END=10093917 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:90:36:0,90,1050 +20 10093918 . A . . END=10093919 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:99:38:0,102,1530 +20 10093920 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:83:37:0,83,1060 +20 10093921 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:99:37:0,102,1530 +20 10093922 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:39:91:37:0,91,1230 +20 10093923 . T A, . . BaseQRankSum=-6.670e-01;DP=104;ExcessHet=3.01;MQRankSum=0.358;RAW_MQandDP=234704,67;ReadPosRankSum=-1.583e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,32,0:67:99:.:1104,0,1257,1209,1353,2563:18,17,15,17 ./.:.:39:91:37:0,91,1230,91,1230,1230 +20 10093924 . G . . END=10093925 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:40:0,99,1485 +20 10093926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:39:96:39:0,96,1440 +20 10093927 . C . . END=10093930 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10093931 . C . . END=10093932 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:96:36:0,96,1440 +20 10093933 . T . . END=10093934 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10093935 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:56:35:0,56,936 +20 10093936 . A . . END=10093938 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:93:34:0,93,1395 +20 10093939 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:87:34:0,87,1019 +20 10093940 . T . . END=10093947 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:93:32:0,93,1395 +20 10093948 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:31:62:31:0,62,944 +20 10093949 . T . . END=10093953 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:32:93:31:0,93,1005 +20 10093954 . G . . END=10093970 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:33:0,99,1012 +20 10093971 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:84:40:0,84,1122 +20 10093972 . C . . END=10093975 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:41:99:40:0,111,1665 +20 10093976 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:91:40:0,91,1212 +20 10093977 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:82:42:0,82,1199 +20 10093978 . G . . END=10093982 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,108,1620 +20 10093983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:90:40:0,90,1277 +20 10093984 . G . . END=10093996 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,105,1195 +20 10093997 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:98:40:0,98,1225 +20 10093998 . A . . END=10094041 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:41:99:38:0,104,1218 +20 10094042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:97:38:0,97,1203 +20 10094043 . T . . END=10094054 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:99:36:0,105,1185 +20 10094055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:92:36:0,92,1108 +20 10094056 . T . . END=10094059 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10094060 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:96:37:0,96,1440 +20 10094061 . A . . END=10094066 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:99:38:0,99,1485 +20 10094067 . T . . END=10094072 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:96:34:0,96,1440 +20 10094073 . A . . END=10094079 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:99:34:0,99,1075 +20 10094080 . T . . END=10094082 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:96:34:0,96,1440 +20 10094083 . T . . END=10094084 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:99:35:0,99,1485 +20 10094085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:91:36:0,91,1076 +20 10094086 . T . . END=10094101 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,99,1153 +20 10094102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:76:42:0,76,1168 +20 10094103 . C . . END=10094137 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:44:99:40:0,101,1217 +20 10094138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:92:42:0,92,1249 +20 10094139 . C . . END=10094250 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:49:99:37:0,100,1165 +20 10094251 . T A, . . BaseQRankSum=0.251;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=223200,62;ReadPosRankSum=1.81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:26,36,0:62:99:.:1299,0,781,1376,889,2265:10,16,23,13 ./.:.:49:99:37:0,100,1165,100,1165,1165 +20 10094252 . C . . END=10094403 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:49:99:37:0,100,1165 +20 10094404 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:98:38:0,98,1181 +20 10094405 . A . . END=10094408 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:36:0,100,1117 +20 10094409 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:93:36:0,93,1121 +20 10094410 . A . . END=10094413 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,99,1485 +20 10094414 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:78:36:0,78,1064 +20 10094415 . A . . END=10094419 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,99,1485 +20 10094420 . G . . END=10094422 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:94:35:0,94,1077 +20 10094423 . A . . END=10094429 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:36:0,99,1485 +20 10094430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:82:37:0,82,1102 +20 10094431 . G . . END=10094442 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1485 +20 10094443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:96:35:0,96,1440 +20 10094444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:88:36:0,88,1099 +20 10094445 . A . . END=10094449 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:93:35:0,93,1083 +20 10094450 . A . . END=10094452 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:99:34:0,99,1485 +20 10094453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:74:35:0,74,965 +20 10094454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:99:35:0,99,1485 +20 10094455 . C . . END=10094462 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:90:34:0,90,1088 +20 10094463 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:34:79:34:0,79,1036 +20 10094464 . C . . END=10094466 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:90:35:0,90,1068 +20 10094467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:88:37:0,88,1097 +20 10094468 . A . . END=10094472 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:34:0,99,1485 +20 10094473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:34:91:34:0,91,1013 +20 10094474 . C . . END=10094486 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1485 +20 10094487 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:92:36:0,92,1082 +20 10094488 . T . . END=10094493 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:99:37:0,99,1485 +20 10094494 . C . . END=10094498 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:95:36:0,95,1093 +20 10094499 . C . . END=10094501 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1152 +20 10094502 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:93:36:0,93,1099 +20 10094503 . G . . END=10094505 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,105,1138 +20 10094506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:87:38:0,87,1147 +20 10094507 . G . . END=10094512 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:39:99:38:0,111,1665 +20 10094513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:93:38:0,93,1141 +20 10094514 . C . . END=10094581 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:44:99:37:0,99,1130 +20 10094582 . A G, . . BaseQRankSum=-1.388e+00;DP=106;ExcessHet=3.01;MQRankSum=1.27;RAW_MQandDP=243410,69;ReadPosRankSum=-1.800e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,30,0:69:99:.:952,0,1350,1070,1440,2510:20,19,16,14 ./.:.:44:99:37:0,99,1130,99,1130,1130 +20 10094583 . T . . END=10094760 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:44:99:37:0,99,1130 +20 10094761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:52:93:52:0,93,1450 +20 10094762 . G . . END=10094769 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:53:99:51:0,120,1800 +20 10094770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:53:87:53:0,87,1503 +20 10094771 . A . . END=10094773 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:51:99:49:0,120,1800 +20 10094774 . C T, . . BaseQRankSum=-7.840e-01;DP=124;ExcessHet=3.01;MQRankSum=0.962;RAW_MQandDP=267241,75;ReadPosRankSum=0.197 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,35,0:75:99:.:1065,0,1282,1185,1385,2570:24,16,21,14 ./.:.:49:97:49:0,97,1393,97,1393,1393 +20 10094775 . A . . END=10094792 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:49:99:45:0,120,1800 +20 10094793 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:43:95:43:0,95,1249 +20 10094794 . T . . END=10094898 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:47:99:43:0,114,1358 +20 10094899 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:49:97:49:0,97,1388 +20 10094900 . G . . END=10094973 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:48:99:44:0,104,1371 +20 10094974 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:96:45:0,96,1282 +20 10094975 . A . . END=10094986 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:99:42:0,117,1755 +20 10094987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:97:45:0,97,1265 +20 10094988 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:99:44:0,114,1710 +20 10094989 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:91:44:0,91,1236 +20 10094990 . T . . END=10094994 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:99:42:0,108,1620 +20 10094995 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:42:87:42:0,87,1169 +20 10094996 . C . . END=10095004 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:99:38:0,99,1108 +20 10095005 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:92:41:0,92,1160 +20 10095006 . A . . END=10095069 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:99:35:0,99,1096 +20 10095070 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:93:35:0,93,1066 +20 10095071 . A . . END=10095080 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:35:0,100,1081 +20 10095081 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:77:36:0,77,1108 +20 10095082 . A . . END=10095098 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:34:0,99,1089 +20 10095099 . C . . END=10095101 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:91:35:0,91,1033 +20 10095102 . A . . END=10095117 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:35:0,99,1074 +20 10095118 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:96:37:0,96,1067 +20 10095119 . A . . END=10095121 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:35:0,99,1485 +20 10095122 . T . . END=10095127 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:93:34:0,93,1395 +20 10095128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:87:33:0,87,986 +20 10095129 . A . . END=10095132 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:93:33:0,93,1395 +20 10095133 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:81:33:0,81,937 +20 10095134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095135 . T . . END=10095161 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:34:0,99,1485 +20 10095162 . A . . END=10095172 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:90:32:0,90,989 +20 10095173 . C . . END=10095182 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:33:0,99,1023 +20 10095183 . T . . END=10095184 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:96:37:0,96,1440 +20 10095185 . T . . END=10095186 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:38:99:38:0,99,1485 +20 10095187 . G . . END=10095196 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:90:32:0,90,1124 +20 10095197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:87:33:0,87,1305 +20 10095198 . T . . END=10095200 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:90:33:0,90,1350 +20 10095201 . C . . END=10095203 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095204 . A . . END=10095205 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:93:36:0,93,1395 +20 10095206 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:75:36:0,75,1081 +20 10095207 . T . . END=10095209 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:96:35:0,96,1093 +20 10095210 . T . . END=10095213 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:34:0,99,1485 +20 10095214 . T . . END=10095236 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:93:32:0,93,1002 +20 10095237 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095238 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:94:35:0,94,1083 +20 10095239 . T . . END=10095240 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095241 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:88:34:0,88,1071 +20 10095242 . A . . END=10095245 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:77:34:0,77,1045 +20 10095247 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:96:32:0,96,992 +20 10095248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,102,1066 +20 10095249 . A . . END=10095250 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095251 . G . . END=10095260 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:99:34:0,99,1112 +20 10095261 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:93:35:0,93,1106 +20 10095262 . T . . END=10095278 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:34:0,99,1051 +20 10095279 . A . . END=10095285 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:90:35:0,90,1350 +20 10095286 . G . . END=10095288 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:84:33:0,84,1260 +20 10095289 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:75:31:0,75,925 +20 10095290 . T . . END=10095299 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:81:29:0,81,1215 +20 10095300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:64:29:0,64,867 +20 10095301 . G . . END=10095302 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:29:0,81,1215 +20 10095303 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:75:30:0,75,910 +20 10095304 . A . . END=10095305 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:87:30:0,87,1305 +20 10095306 . T . . END=10095307 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:78:29:0,78,1170 +20 10095308 . A . . END=10095310 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:80:31:0,80,923 +20 10095311 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:78:30:0,78,864 +20 10095312 . C . . END=10095318 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:28:0,81,871 +20 10095319 . T . . END=10095327 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:75:29:0,75,1125 +20 10095328 . G . . END=10095329 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:81:28:0,81,1215 +20 10095330 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:78:29:0,78,1170 +20 10095331 . T . . END=10095335 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:81:29:0,81,1215 +20 10095336 . A . . END=10095341 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:72:26:0,72,820 +20 10095342 . G . . END=10095344 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:69:27:0,69,1035 +20 10095345 . C . . END=10095350 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:72:28:0,72,1080 +20 10095351 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:30:0,81,1215 +20 10095352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:70:28:0,70,822 +20 10095353 . A . . END=10095362 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:81:27:0,81,840 +20 10095363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:68:29:0,68,841 +20 10095364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:87:29:0,87,892 +20 10095365 . C . . END=10095366 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:90:30:0,90,920 +20 10095367 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:65:30:0,65,908 +20 10095368 . T . . END=10095372 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:93:31:0,93,941 +20 10095373 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:85:32:0,85,979 +20 10095374 . G . . END=10095376 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:90:32:0,90,971 +20 10095377 . C . . END=10095381 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:80:32:0,80,947 +20 10095382 . G . . END=10095385 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:90:32:0,90,1350 +20 10095386 . G . . END=10095387 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:84:31:0,84,1260 +20 10095388 . G . . END=10095395 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:72:30:0,72,1080 +20 10095396 . C . . END=10095412 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:63:32:0,63,945 +20 10095413 . T . . END=10095415 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:54:37:0,54,810 +20 10095416 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:51:37:0,51,765 +20 10095417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:48:40:0,48,720 +20 10095418 . T . . END=10095419 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:45:39:0,45,675 +20 10095420 . A . . END=10095421 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:39:40:0,39,585 +20 10095422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:42:36:42:0,36,540 +20 10095423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:43:33:43:0,33,495 +20 10095424 . A . . END=10095426 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:30:40:0,30,450 +20 10095427 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:27:41:0,27,405 +20 10095428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:24:41:0,24,360 +20 10095429 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:21:41:0,21,315 +20 10095430 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:18:40:0,18,270 +20 10095431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:15:39:0,15,225 +20 10095432 . GTGATGATGA GTGA,G, . . BaseQRankSum=1.27;DP=112;ExcessHet=3.01;MQRankSum=-4.431e+00;RAW_MQandDP=353748,112;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL:SB ./.:27,0,23,0:50:99:877,959,3140,0,2181,2108,959,3140,2181,3140:16,11,12,11 ./.:0,27,0,0:27:82:1217,82,0,1217,82,1217,1217,82,1217,1217:0,0,13,14 +20 10095433 . T *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095434 . G *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095435 . A *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095436 . T *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095437 . G *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095438 . A *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095439 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:36:0:36:0,0,0,0,0,0 +20 10095440 . G *, . . DP=109 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:35:90:32:0,90,1021,90,1021,1021 +20 10095441 . A *, . . DP=109 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:35:90:32:0,90,1021,90,1021,1021 +20 10095442 . T . . END=10095468 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:90:32:0,90,1021 +20 10095469 . T . . END=10095472 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:99:33:0,99,1037 +20 10095473 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:54:33:0,54,948 +20 10095474 . A . . END=10095475 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:67:33:0,67,1016 +20 10095476 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:71:33:0,71,939 +20 10095477 . A . . END=10095478 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:96:32:0,96,1056 +20 10095479 . A . . END=10095499 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:37:0,100,1117 +20 10095500 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:98:39:0,98,1096 +20 10095501 . T . . END=10095502 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:39:0,101,1151 +20 10095503 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:98:38:0,98,1135 +20 10095504 . G . . END=10095508 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:36:0,102,1530 +20 10095509 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:95:37:0,95,1111 +20 10095510 . C . . END=10095512 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:37:0,108,1620 +20 10095513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:95:37:0,95,1123 +20 10095514 . G . . END=10095521 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:37:0,105,1575 +20 10095522 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:94:39:0,94,1135 +20 10095523 . G . . END=10095532 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:37:0,108,1620 +20 10095533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:88:39:0,88,1137 +20 10095534 . A . . END=10095535 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:39:0,108,1620 +20 10095536 . T . . END=10095537 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:84:39:0,84,1113 +20 10095538 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:96:38:0,96,1120 +20 10095539 . C . . END=10095541 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:38:0,99,1485 +20 10095542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:89:36:0,89,1072 +20 10095543 . T . . END=10095560 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:99:36:0,102,1107 +20 10095561 . A . . END=10095564 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:96:40:0,96,1440 +20 10095565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:99:40:0,99,1485 +20 10095566 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:92:40:0,92,1140 +20 10095567 . A . . END=10095568 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:38:0,102,1530 +20 10095569 . A . . END=10095573 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:96:37:0,96,1440 +20 10095574 . C . . END=10095575 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:99:36:0,99,1485 +20 10095576 . G . . END=10095580 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:93:33:0,93,1395 +20 10095581 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:34:66:34:0,66,998 +20 10095582 . A . . END=10095587 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:34:90:30:0,90,966 +20 10095588 . A . . END=10095591 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:84:35:0,84,1095 +20 10095593 . C . . END=10095597 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:99:36:0,105,1575 +20 10095598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:94:37:0,94,1128 +20 10095599 . A . . END=10095636 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:99:36:0,100,1121 +20 10095637 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:79:35:0,79,1059 +20 10095638 . A . . END=10095639 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:99:35:0,102,1530 +20 10095640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:88:35:0,88,1069 +20 10095641 . A . . END=10095647 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:99:34:0,99,1485 +20 10095648 . T . . END=10095653 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:90:34:0,90,1072 +20 10095654 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095655 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:96:35:0,96,1440 +20 10095656 . T . . END=10095658 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:34:0,100,1111 +20 10095659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:96:35:0,96,1440 +20 10095660 . A . . END=10095661 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095662 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:81:36:0,81,1111 +20 10095663 . C . . END=10095668 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:37:0,99,1485 +20 10095669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:96:40:0,96,1241 +20 10095670 . T . . END=10095692 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:37:0,101,1144 +20 10095693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:84:39:0,84,1170 +20 10095694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:38:0,102,1530 +20 10095695 . A . . END=10095696 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:92:36:0,92,1167 +20 10095697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:86:37:0,86,1043 +20 10095698 . C . . END=10095701 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:90:35:0,90,1350 +20 10095702 . A . . END=10095711 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:84:30:0,84,1260 +20 10095712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:30:58:30:0,58,881 +20 10095713 . A . . END=10095727 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:31:81:29:0,81,1215 +20 10095728 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:31:78:31:0,78,1170 +20 10095729 . T . . END=10095735 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:32:81:31:0,81,1215 +20 10095736 . C . . END=10095740 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:90:32:0,90,1350 +20 10095741 . A G, . . BaseQRankSum=-5.340e-01;DP=105;ExcessHet=3.01;MQRankSum=-2.313e+00;RAW_MQandDP=233528,71;ReadPosRankSum=-5.000e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,34,0:70:99:.:1104,0,1233,1213,1335,2547:14,22,18,16 ./.:.:34:67:34:0,67,972,67,972,972 +20 10095742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:33:96:33:0,96,1440 +20 10095743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095744 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095745 . T . . END=10095746 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095747 . T . . END=10095749 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:91:35:0,91,1059 +20 10095750 . G . . END=10095761 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095762 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:37:92:37:0,92,1021 +20 10095763 . G . . END=10095770 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:38:99:36:0,100,1099 +20 10095771 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:66:35:0,66,1071 +20 10095772 . A . . END=10096152 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:48:99:36:0,101,1104 +20 10096153 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:96:39:0,96,1440 +20 10096154 . T . . END=10096163 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:40:99:37:0,99,1485 +20 10096164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:36:92:36:0,92,1081 +20 10096165 . G . . END=10096189 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:99:36:0,99,1122 +20 10096190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:98:42:0,98,1267 +20 10096191 . C . . END=10096212 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:37:0,102,1255 +20 10096213 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:80:39:0,80,1140 +20 10096214 . T . . END=10096236 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:37:0,99,1223 +20 10096237 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:40:86:40:0,86,1175 +20 10096238 . T . . END=10096242 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:41:99:40:0,120,1221 +20 10096243 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:93:42:0,93,1181 +20 10096244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:42:0,111,1228 +20 10096245 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:95:42:0,95,1235 +20 10096246 . A . . END=10096292 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:47:99:40:0,108,1181 +20 10096293 . C T, . . BaseQRankSum=4.66;DP=115;ExcessHet=3.01;MQRankSum=1.40;RAW_MQandDP=257261,75;ReadPosRankSum=-1.135e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,38,0:75:99:.:1384,0,1258,1495,1372,2867:21,16,21,17 ./.:.:47:99:40:0,108,1181,108,1181,1181 +20 10096294 . T . . END=10096317 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:47:99:40:0,108,1181 +20 10096318 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:48:94:48:0,94,1351 +20 10096319 . C . . END=10096356 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:49:99:44:0,120,1800 +20 10096357 . A G, . . BaseQRankSum=0.964;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=1.55 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:57:0,120,1800,120,1800,1800 ./.:1,41,0:42:94:.:1166,94,0,1169,121,1196:1,0,25,16 +20 10096358 . T . . END=10096455 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:48:99:43:0,104,1361 +20 10096456 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:52:98:52:0,98,1401 +20 10096457 . T . . END=10096595 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:60:99:43:0,99,1273 +20 10096596 . C T, . . BaseQRankSum=2.73;DP=130;ExcessHet=3.01;MQRankSum=0.612;RAW_MQandDP=300461,87;ReadPosRankSum=-1.700e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,47,0:87:99:.:1591,0,1273,1711,1414,3125:19,21,23,24 ./.:.:60:99:43:0,99,1273,99,1273,1273 +20 10096597 . T . . END=10096717 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:60:99:43:0,99,1273 +20 10096718 . C T, . . BaseQRankSum=-2.220e-01;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=0.856 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:90:99:75:0,120,1800,120,1800,1800 ./.:49,2,0:51:99:.:0,107,1451,146,1456,1495:25,24,1,1 +20 10096719 . T . . END=10096732 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:61:99:55:0,120,1800 +20 10096733 . C T, . . BaseQRankSum=1.16;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=212400,59;ReadPosRankSum=-9.330e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:90:99:75:0,120,1800,120,1800,1800 ./.:1,56,0:57:99:.:1747,143,0,1750,168,1775:0,1,27,29 +20 10096734 . G . . END=10096767 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:60:99:57:0,120,1800 +20 10096768 . A C, . . BaseQRankSum=-2.764e+00;DP=148;ExcessHet=3.01;MQRankSum=-1.609e+00;RAW_MQandDP=525823,148;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL:SB ./.:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 ./.:0,56,0:56:99:1785,168,0,1785,168,1785:0,0,26,30 +20 10096769 . A . . END=10096857 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:55:99:50:0,102,1530 +20 10096858 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:54:96:54:0,96,1440 +20 10096859 . T . . END=10096861 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:54:87:53:0,87,1305 +20 10096862 . A . . END=10096874 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:55:63:47:0,63,945 +20 10096875 . A . . END=10096876 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:51:57:50:0,57,855 +20 10096877 . G . . END=10096878 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:51:48:50:0,48,720 +20 10096879 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:51:42:51:0,42,630 +20 10096880 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:50:39:50:0,39,585 +20 10096881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:36:52:0,36,540 +20 10096882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:33:52:0,33,495 +20 10096883 . A . . END=10096885 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:53:27:48:0,27,405 +20 10096886 . T . . END=10096888 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:53:21:52:0,21,315 +20 10096889 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:18:52:0,18,270 +20 10096890 . C . . END=10096893 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:15:50:0,15,225 +20 10096894 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:50:12:50:0,12,180 +20 10096895 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:50:9:50:0,9,135 +20 10096896 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:48:6:48:0,6,90 +20 10096897 . T . . END=10096898 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:47:0:47:0,0,0 +20 10096899 . G T, . . BaseQRankSum=2.76;DP=120;ExcessHet=3.01;MQRankSum=-1.387e+00;RAW_MQandDP=428838,120;ReadPosRankSum=0.422 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 ./.:0,41,0:41:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,14,27 +20 10096900 . G . . END=10096904 GT:DP:GQ:MIN_DP:PL ./.:82:99:78:0,120,1800 ./.:47:0:46:0,0,0 +20 10096905 . TA T, . . BaseQRankSum=-7.550e-01;DP=123;ExcessHet=3.01;MQRankSum=-1.677e+00;RAW_MQandDP=436879,123;ReadPosRankSum=0.461 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 ./.:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096906 . A *, . . DP=123 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 ./.:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096907 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:82:0,120,1800 ./.:48:0:48:0,0,0 +20 10096908 . T . . END=10096924 GT:DP:GQ:MIN_DP:PL ./.:84:99:82:0,120,1800 ./.:47:99:45:0,112,1358 +20 10096925 . T C, . . BaseQRankSum=-4.687e+00;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-6.140e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:84:99:82:0,120,1800,120,1800,1800 ./.:20,18,0:38:99:.:364,0,556,424,609,1033:6,14,7,11 +20 10096926 . G . . END=10096932 GT:DP:GQ:MIN_DP:PL ./.:84:99:82:0,120,1800 ./.:46:99:43:0,118,1289 +20 10096933 . G C, . . BaseQRankSum=-1.914e+00;DP=123;ExcessHet=3.01;MQRankSum=-1.802e+00;RAW_MQandDP=435579,123;ReadPosRankSum=0.334 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 ./.:0,38,0:38:99:0|1:10096933_G_C:1730,117,0,1730,117,1730:0,0,13,25 +20 10096934 . T . . END=10096957 GT:DP:GQ:MIN_DP:PL ./.:90:99:86:0,120,1800 ./.:48:99:43:0,116,1435 +20 10096958 . G A, . . BaseQRankSum=2.84;DP=139;ExcessHet=3.01;MQRankSum=-1.701e+00;RAW_MQandDP=493179,139;ReadPosRankSum=-1.833e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 ./.:0,47,0:47:99:0|1:10096933_G_C:1897,141,0,1897,141,1897:0,0,16,31 +20 10096959 . G . . END=10097023 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:54:99:40:0,99,1197 +20 10097024 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:41:96:41:0,96,1215 +20 10097025 . G . . END=10097039 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:42:99:40:0,104,1197 +20 10097040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:90:40:0,90,1144 +20 10097041 . A . . END=10097042 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:99:40:0,108,1620 +20 10097043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:38:80:38:0,80,1137 +20 10097044 . T . . END=10097061 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:39:99:38:0,99,1134 +20 10097062 . T . . END=10097066 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:93:40:0,93,1395 +20 10097067 . A . . END=10097068 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:41:87:41:0,87,1305 +20 10097069 . A . . END=10097074 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:43:90:42:0,90,1350 +20 10097075 . T G, . . BaseQRankSum=1.82;ClippingRankSum=0.00;DP=126;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=438028,126;ReadPosRankSum=1.53 GT:AD:DP:GQ:PL:SB ./.:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 ./.:1,33,0:34:92:1056,92,0,1058,99,1065:0,1,16,17 +20 10097076 . A . . END=10097079 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:41:81:40:0,81,1215 +20 10097080 . A . . END=10097085 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:43:72:42:0,72,1080 +20 10097086 . A . . END=10097089 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:42:60:41:0,60,900 +20 10097090 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:41:54:41:0,54,810 +20 10097091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:40:51:40:0,51,765 +20 10097092 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:42:39:0,42,630 +20 10097093 . G . . END=10097094 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:39:38:0,39,585 +20 10097095 . T . . END=10097096 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:40:33:40:0,33,495 +20 10097097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:38:30:38:0,30,450 +20 10097098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:36:24:36:0,24,360 +20 10097099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:18:39:0,18,270 +20 10097100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:21:39:0,21,315 +20 10097101 . C CTTTT,CTTT, . . BaseQRankSum=-1.134e+00;DP=104;ExcessHet=3.01;MQRankSum=-2.428e+00;RAW_MQandDP=353094,104;ReadPosRankSum=2.09 GT:AD:DP:GQ:PL:SB ./.:34,4,26,0:64:99:1129,558,2012,0,1324,1306,982,2052,1430,2377:22,12,15,15 ./.:0,22,0,0:22:71:1008,71,0,1008,71,1009,1008,71,1009,1009:0,0,13,9 +20 10097102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:0:36:0,0,0 +20 10097103 . T . . END=10097107 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:60:35:0,60,900 +20 10097108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:72:36:0,72,1080 +20 10097109 . T . . END=10097111 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:66:34:0,66,990 +20 10097112 . C T, . . BaseQRankSum=-1.189e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=108000,30;ReadPosRankSum=-8.330e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:60:0,120,1800,120,1800,1800 ./.:27,3,0:30:36:.:0,36,662,79,670,713:14,13,3,0 +20 10097113 . T . . END=10097115 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:72:35:0,72,1080 +20 10097116 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:34:0:34:0,0,794 +20 10097117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:75:35:0,75,1125 +20 10097118 . G . . END=10097120 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:29:0:29:0,0,602 +20 10097121 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:27:46:27:0,46,767 +20 10097122 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:78:30:0,78,920 +20 10097123 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:55:30:0,55,879 +20 10097124 . G . . END=10097133 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:29:81:27:0,81,816 +20 10097134 . C . . END=10097140 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:90:31:0,90,1350 +20 10097141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:33:71:33:0,71,988 +20 10097142 . A . . END=10097144 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:93:31:0,93,960 +20 10097145 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:29:87:29:0,87,919 +20 10097146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:96:32:0,96,1009 +20 10097147 . G . . END=10097148 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:34:99:34:0,101,955 +20 10097149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:76:35:0,76,1005 +20 10097150 . G . . END=10097152 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:99:35:0,104,1001 +20 10097153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:96:32:0,96,971 +20 10097154 . A . . END=10097177 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:40:99:34:0,102,1033 +20 10097178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:39:96:39:0,96,1133 +20 10097179 . A . . END=10097356 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:45:99:39:0,100,1124 +20 10097357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:41:92:41:0,92,1242 +20 10097358 . A . . END=10097416 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:41:99:38:0,99,1162 +20 10097417 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:38:96:38:0,96,1151 +20 10097418 . G . . END=10097421 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:37:99:34:0,99,1485 +20 10097422 . T . . END=10097428 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:90:33:0,90,1350 +20 10097429 . G . . END=10097432 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:33:84:32:0,84,1260 +20 10097433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:64:30:0,64,876 +20 10097434 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:78:30:0,78,1170 +20 10097435 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:66:30:0,66,990 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, . . BaseQRankSum=1.82;DP=119;ExcessHet=3.01;MQRankSum=-6.464e+00;RAW_MQandDP=262143,89;ReadPosRankSum=-3.097e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:57,32,0:89:99:.:1092,0,2241,1263,2338,3601:23,34,11,21 ./.:.:30:66:30:0,66,990,66,990,990 +20 10097437 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC *,TTTTCTTTCTTTCTTTCTTTCTTTCTTTC,T, . . DP=106;ExcessHet=3.01;RAW_MQandDP=325330,106 GT:AD:DP:GQ:PL:SB ./.:0,32,23,0,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642,2201,1453,1262,2642,2642:0,0,16,39 ./.:0,0,0,21,0:21:67:928,928,928,928,928,928,67,67,67,0,928,928,928,67,928:0,0,6,15 +20 10097438 . T *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097439 . T *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097440 . T *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097441 . C *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097442 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097443 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097444 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097445 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097446 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097447 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097448 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097449 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097450 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097451 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097452 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097453 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097454 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097455 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097456 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097457 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097458 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097459 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097460 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097461 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097462 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097463 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097464 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097465 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097466 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097467 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097468 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097469 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097470 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:19:0:19:0,0,0 +20 10097471 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:18:33:18:0,33,495 +20 10097472 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:19:36:19:0,36,540 +20 10097473 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:16:0:16:0,0,95 +20 10097474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:18:39:18:0,39,585 +20 10097475 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:18:0:17:0,0,261 +20 10097476 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:11:66:0,11,2255 ./.:18:0:17:0,0,261 +20 10097477 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:16:42:16:0,42,630 +20 10097478 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:0:18:0,0,311 +20 10097479 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:42:20:0,42,630 +20 10097480 . T . . END=10097482 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:17:0:15:0,0,280 +20 10097483 . T . . END=10097484 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:45:19:0,45,531 +20 10097485 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:0:18:0,0,435 +20 10097486 . T . . END=10097487 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:54:20:0,54,625 +20 10097488 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:19:24:19:0,24,531 +20 10097489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:22:18:0,22,509 +20 10097490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:32:21:0,32,562 +20 10097491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:29:21:0,29,589 +20 10097492 . T . . END=10097493 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:57:20:0,57,855 +20 10097494 . T . . END=10097495 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:60:20:0,60,609 +20 10097496 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:54:18:0,54,557 +20 10097497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:19:28:19:0,28,490 +20 10097498 . C . . END=10097501 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:22:60:20:0,60,598 +20 10097502 . T . . END=10097503 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:72:25:0,72,1080 +20 10097504 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:66:26:0,66,762 +20 10097505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:75:26:0,75,1125 +20 10097506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:27:81:27:0,81,846 +20 10097507 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:78:26:0,78,831 +20 10097508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:27:81:27:0,81,822 +20 10097509 . C . . END=10097512 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:25:72:24:0,72,687 +20 10097513 . G . . END=10097514 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:28:81:27:0,81,759 +20 10097515 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:78:30:0,78,854 +20 10097516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,886 +20 10097517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,863 +20 10097518 . T . . END=10097521 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:92:31:0,92,941 +20 10097522 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:77:32:0,77,955 +20 10097523 . G . . END=10097525 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,931 +20 10097526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,881 +20 10097527 . A . . END=10097529 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:90:30:0,90,940 +20 10097530 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:75:33:0,75,982 +20 10097531 . G . . END=10097532 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10097533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,960 +20 10097534 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,967 +20 10097535 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:88:33:0,88,1011 +20 10097536 . T . . END=10097537 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:96:34:0,96,1440 +20 10097538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:70:33:0,70,995 +20 10097539 . G . . END=10097542 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:30:0,90,931 +20 10097543 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,914 +20 10097544 . A . . END=10097546 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:30:0,90,957 +20 10097547 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,948 +20 10097548 . G . . END=10097549 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:31:0,90,875 +20 10097550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:87:33:0,87,911 +20 10097551 . A . . END=10097554 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:90:30:0,90,933 +20 10097555 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:61:31:0,61,872 +20 10097556 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,984 +20 10097557 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:75:32:0,75,900 +20 10097558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:82:31:0,82,940 +20 10097559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:60:31:0,60,835 +20 10097560 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10097561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,948 +20 10097562 . G . . END=10097564 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:90:30:0,90,939 +20 10097565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:82:31:0,82,951 +20 10097566 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:79:31:0,79,934 +20 10097567 . T . . END=10097569 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:93:32:0,93,1395 +20 10097570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:65:31:0,65,891 +20 10097571 . T . . END=10097572 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,936 +20 10097573 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:85:32:0,85,936 +20 10097574 . G . . END=10097583 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:93:31:0,93,971 +20 10097584 . C . . END=10097585 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:99:33:0,99,1001 +20 10097586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,911 +20 10097587 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:78:32:0,78,938 +20 10097588 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,940 +20 10097589 . A . . END=10097591 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:99:34:0,102,1030 +20 10097592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:90:34:0,90,1016 +20 10097593 . C . . END=10097595 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:99:33:0,99,1012 +20 10097596 . G . . END=10097598 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:91:32:0,91,954 +20 10097599 . C . . END=10097601 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:99:34:0,102,1063 +20 10097602 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:88:35:0,88,1102 +20 10097603 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:76:35:0,76,1041 +20 10097604 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:99:35:0,99,1485 +20 10097605 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:82:35:0,82,1062 +20 10097606 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:99:35:0,99,1485 +20 10097607 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:89:35:0,89,1065 +20 10097608 . C . . END=10097609 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:93:34:0,93,1395 +20 10097610 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:88:35:0,88,1036 +20 10097611 . A . . END=10097613 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:93:35:0,93,1395 +20 10097614 . C . . END=10097625 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:81:29:0,81,1014 +20 10097626 . C A, . . BaseQRankSum=1.09;DP=77;ExcessHet=3.01;MQRankSum=-1.331e+00;RAW_MQandDP=162820,48;ReadPosRankSum=1.02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:28,20,0:48:99:.:655,0,957,739,1017,1757:8,20,8,12 ./.:.:33:81:29:0,81,1014,81,1014,1014 +20 10097627 . T . . END=10097628 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:81:29:0,81,1014 +20 10097629 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:30:78:30:0,78,1170 +20 10097630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:81:31:0,81,1215 +20 10097631 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:64:31:0,64,916 +20 10097632 . T . . END=10097633 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:72:31:0,72,1080 +20 10097634 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:68:29:0,68,806 +20 10097635 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:72:28:0,72,1080 +20 10097636 . T . . END=10097639 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:66:27:0,66,792 +20 10097640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:26:56:26:0,56,715 +20 10097641 . C . . END=10097648 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:25:63:24:0,63,945 +20 10097649 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:57:23:0,57,649 +20 10097650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:60:24:0,60,900 +20 10097651 . C . . END=10097653 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:57:21:0,57,855 +20 10097654 . T . . END=10097657 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:54:21:0,54,810 +20 10097658 . C . . END=10097665 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:51:19:0,51,765 +20 10097666 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:18:54:18:0,54,556 +20 10097667 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:57:19:0,57,568 +20 10097668 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:18:22:18:0,22,461 +20 10097669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:54:19:0,54,810 +20 10097670 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:41:19:0,41,505 +20 10097671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:20:19:0,20,481 +20 10097672 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:21:47:21:0,47,612 +20 10097673 . T . . END=10097675 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:60:22:0,60,900 +20 10097676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:58:23:0,58,642 +20 10097677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:60:23:0,60,900 +20 10097678 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:46:23:0,46,645 +20 10097679 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:20:48:20:0,48,570 +20 10097680 . T . . END=10097681 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:22:63:22:0,63,945 +20 10097682 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:45:23:0,45,601 +20 10097683 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:69:24:0,69,1035 +20 10097684 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:53:24:0,53,706 +20 10097685 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:69:24:0,69,1035 +20 10097686 . T . . END=10097692 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:26:72:24:0,72,764 +20 10097693 . T . . END=10097694 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:69:27:0,69,792 +20 10097695 . C . . END=10097697 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:75:26:0,75,1125 +20 10097698 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:65:27:0,65,805 +20 10097699 . T . . END=10097700 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:78:26:0,78,823 +20 10097701 . T . . END=10097704 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:81:28:0,81,887 +20 10097705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:57:28:0,57,847 +20 10097706 . T . . END=10097710 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:78:27:0,78,1170 +20 10097711 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:81:29:0,81,1215 +20 10097712 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:75:29:0,75,872 +20 10097713 . C . . END=10097720 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:81:30:0,81,1215 +20 10097721 . C . . END=10097723 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:32:90:32:0,90,1350 +20 10097724 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:87:29:0,87,905 +20 10097725 . G . . END=10097728 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:32:90:30:0,90,905 +20 10097729 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:99:33:0,99,971 +20 10097730 . A . . END=10097737 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:93:32:0,93,981 +20 10097738 . G . . END=10097750 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:37:99:35:0,105,1005 +20 10097751 . T C, . . BaseQRankSum=-3.680e-01;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=1.08 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:60:99:49:0,120,1800,120,1800,1800 ./.:1,37,0:38:82:.:994,82,0,997,110,1024:0,1,16,21 +20 10097752 . G . . END=10097763 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:38:99:36:0,105,1575 +20 10097764 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:39:84:39:0,84,1141 +20 10097765 . C . . END=10097788 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:42:99:39:0,111,1193 +20 10097789 . T C, . . BaseQRankSum=-1.157e+00;DP=100;ExcessHet=3.01;MQRankSum=-2.805e+00;RAW_MQandDP=343694,100;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL:SB ./.:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 ./.:0,43,0:43:99:1330,129,0,1330,129,1330:0,0,22,21 +20 10097790 . C . . END=10097868 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:42:99:36:0,100,1119 +20 10097869 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:90:37:0,90,1136 +20 10097870 . T . . END=10097879 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:99:37:0,99,1120 +20 10097880 . G . . END=10097882 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:96:37:0,96,1440 +20 10097883 . G . . END=10097897 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:33:84:30:0,84,1260 +20 10097898 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:30:79:30:0,79,922 +20 10097899 . C . . END=10097900 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:33:90:32:0,90,1350 +20 10097901 . C . . END=10097905 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:99:35:0,99,1485 +20 10097906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:35:88:35:0,88,1026 +20 10097907 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:92:36:0,92,1084 +20 10097908 . C . . END=10097915 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:99:35:0,99,1485 +20 10097916 . T . . . GT:DP:GQ:MIN_DP:PL ./.:40:88:40:0,88,1449 ./.:36:99:35:0,99,1485 +20 10097917 . C . . END=10097919 GT:DP:GQ:MIN_DP:PL ./.:40:96:39:0,96,1440 ./.:36:99:35:0,99,1485 +20 10097920 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:99:40:0,99,1485 ./.:36:99:35:0,99,1485 +20 10097921 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:35:92:35:0,92,1058 +20 10097922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:33:76:33:0,76,991 +20 10097923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:35:99:35:0,99,1485 +20 10097924 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:34:82:34:0,82,1038 +20 10097925 . C . . END=10097926 GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:34:99:34:0,99,1485 +20 10097927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:38:0,99,1485 ./.:34:99:34:0,99,1485 +20 10097928 . G A, . . BaseQRankSum=-1.203e+00;DP=66;ExcessHet=3.01;MQRankSum=-1.654e+00;RAW_MQandDP=229323,66;ReadPosRankSum=-7.900e-02 GT:AD:DP:GQ:PL:SB ./.:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 ./.:0,29,0:29:87:939,87,0,939,87,939:0,0,21,8 +20 10097929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:34:81:34:0,81,972 +20 10097930 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:34:99:33:0,99,1013 +20 10097931 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:99:33:0,99,1013 +20 10097932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:90:34:0,90,1011 +20 10097933 . C . . END=10097935 GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:34:99:33:0,99,1031 +20 10097936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:99:33:0,99,1031 +20 10097937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:90:34:0,90,1057 +20 10097938 . G . . END=10097939 GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:35:99:35:0,102,1530 +20 10097940 . T . . END=10097941 GT:DP:GQ:MIN_DP:PL ./.:35:84:35:0,84,1260 ./.:35:96:35:0,96,1440 +20 10097942 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:35:96:35:0,96,1440 +20 10097943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:35:80:35:0,80,993 +20 10097944 . C . . END=10097946 GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:36:93:35:0,93,1395 +20 10097947 . G . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:32:81:27:0,81,866 +20 10097948 . C . . END=10097949 GT:DP:GQ:MIN_DP:PL ./.:38:87:38:0,87,1305 ./.:32:81:27:0,81,866 +20 10097950 . T . . END=10097951 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:32:81:27:0,81,866 +20 10097952 . A . . END=10097953 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:32:81:27:0,81,866 +20 10097954 . C . . END=10097957 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:32:81:27:0,81,866 +20 10097958 . C . . END=10097960 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:32:81:27:0,81,866 +20 10097961 . A . . END=10097965 GT:DP:GQ:MIN_DP:PL ./.:34:93:34:0,93,1395 ./.:32:81:27:0,81,866 +20 10097966 . C . . END=10097969 GT:DP:GQ:MIN_DP:PL ./.:35:87:34:0,87,1305 ./.:32:81:27:0,81,866 +20 10097970 . G . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:32:81:27:0,81,866 +20 10097971 . A . . END=10097978 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:29:75:28:0,75,1125 +20 10097979 . C . . END=10097980 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:31:81:30:0,81,1215 +20 10097981 . T . . END=10097985 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:31:90:31:0,90,947 +20 10097986 . C . . END=10097988 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:30:87:30:0,87,1305 +20 10097989 . T . . END=10097996 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10097997 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:86:34:0,86,958 +20 10097998 . C . . END=10098002 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10098003 . T . . END=10098006 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:32:84:30:0,84,896 +20 10098007 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:30:79:30:0,79,871 +20 10098008 . C . . END=10098009 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:30:84:30:0,84,1260 +20 10098010 . T . . END=10098011 GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:30:84:30:0,84,1260 +20 10098012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:32:90:32:0,90,1350 +20 10098013 . T . . END=10098014 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,99,1485 ./.:32:90:32:0,90,1350 +20 10098015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:33:54:33:0,54,926 +20 10098016 . T . . END=10098022 GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:32:90:31:0,90,913 +20 10098023 . G . . END=10098027 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:35:99:34:0,99,1485 +20 10098028 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:34:81:34:0,81,1002 +20 10098029 . T . . END=10098031 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:34:96:34:0,96,1440 +20 10098032 . T . . END=10098037 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:37:99:35:0,99,1485 +20 10098038 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:38:97:38:0,97,1122 +20 10098039 . G . . END=10098056 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:39:99:36:0,99,1151 +20 10098057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:37:96:37:0,96,1085 +20 10098058 . A . . END=10098059 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:40:99:39:0,106,1184 +20 10098060 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:38:87:38:0,87,1139 +20 10098061 . A . . END=10098065 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:39:99:38:0,114,1222 +20 10098066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:40:88:40:0,88,1176 +20 10098067 . A . . END=10098074 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:42:99:40:0,100,1191 +20 10098075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:40:92:40:0,92,1602 ./.:42:99:40:0,100,1191 +20 10098076 . T . . END=10098089 GT:DP:GQ:MIN_DP:PL ./.:38:99:37:0,99,1485 ./.:42:99:40:0,100,1191 +20 10098090 . T . . END=10098093 GT:DP:GQ:MIN_DP:PL ./.:37:96:36:0,96,1440 ./.:42:99:40:0,100,1191 +20 10098094 . T . . END=10098096 GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:42:99:40:0,100,1191 +20 10098097 . A . . END=10098099 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:42:99:40:0,100,1191 +20 10098100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:86:40:0,86,1236 +20 10098101 . A . . END=10098102 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:44:99:39:0,111,1294 +20 10098103 . A . . END=10098108 GT:DP:GQ:MIN_DP:PL ./.:34:84:33:0,84,1260 ./.:44:99:39:0,111,1294 +20 10098109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:36:0,93,1395 ./.:44:99:39:0,111,1294 +20 10098110 . G C, . . BaseQRankSum=2.51;DP=80;ExcessHet=3.01;MQRankSum=-1.477e+00;RAW_MQandDP=282482,80;ReadPosRankSum=-7.300e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 ./.:0,44,0:44:99:0|1:10098110_G_C:1893,135,0,1893,135,1893:0,0,18,26 +20 10098111 . T . . END=10098112 GT:DP:GQ:MIN_DP:PL ./.:36:93:35:0,93,1395 ./.:45:99:44:0,114,1710 +20 10098113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:87:35:0,87,1305 ./.:45:99:44:0,114,1710 +20 10098114 . C . . END=10098119 GT:DP:GQ:MIN_DP:PL ./.:36:93:35:0,93,1395 ./.:45:99:44:0,114,1710 +20 10098120 . T . . END=10098125 GT:DP:GQ:MIN_DP:PL ./.:34:84:34:0,84,1260 ./.:45:99:44:0,114,1710 +20 10098126 . A . . END=10098127 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:45:99:44:0,114,1710 +20 10098128 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:42:89:42:0,89,1200 +20 10098129 . T . . END=10098132 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:44:99:43:0,118,1352 +20 10098133 . T . . END=10098134 GT:DP:GQ:MIN_DP:PL ./.:38:91:37:0,91,1395 ./.:44:99:43:0,118,1352 +20 10098135 . C A, . . BaseQRankSum=-1.155e+00;DP=80;ExcessHet=3.01;MQRankSum=1.55;RAW_MQandDP=286382,80;ReadPosRankSum=-5.910e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 ./.:0,41,0:41:99:0|1:10098110_G_C:1780,126,0,1780,126,1780:0,0,21,20 +20 10098136 . A . . END=10098147 GT:DP:GQ:MIN_DP:PL ./.:36:90:33:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:87:33:0,87,1305 ./.:42:99:40:0,106,1249 +20 10098149 . T . . END=10098150 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098151 . A . . END=10098160 GT:DP:GQ:MIN_DP:PL ./.:33:83:31:0,83,1260 ./.:42:99:40:0,106,1249 +20 10098161 . A . . END=10098163 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098164 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:41:89:41:0,89,1218 +20 10098165 . C . . END=10098172 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:39:99:37:0,99,1139 +20 10098173 . T . . END=10098176 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:36:87:36:0,87,1305 +20 10098177 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:36:90:36:0,90,1350 +20 10098178 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:36:81:36:0,81,1215 +20 10098179 . A . . END=10098180 GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:37:72:37:0,72,1080 +20 10098181 . T . . END=10098195 GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:34:63:33:0,63,945 +20 10098196 . A . . END=10098197 GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:33:57:33:0,57,855 +20 10098198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:54:33:0,54,810 +20 10098199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:45:33:0,45,675 +20 10098200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:39:33:0,39,585 +20 10098201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:34:27:34:0,27,405 +20 10098202 . G . . END=10098203 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:21:33:0,21,315 +20 10098204 . G . . END=10098207 GT:DP:GQ:MIN_DP:PL ./.:24:60:21:0,60,900 ./.:31:15:30:0,15,225 +20 10098208 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:21:0,60,900 ./.:31:12:31:0,12,180 +20 10098209 . T . . END=10098216 GT:DP:GQ:MIN_DP:PL ./.:24:60:21:0,60,900 ./.:29:0:26:0,0,0 +20 10098217 . T . . END=10098218 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:29:0:26:0,0,0 +20 10098219 . TATATATA T, . . BaseQRankSum=3.15;DP=54;ExcessHet=3.01;MQRankSum=-2.050e-01;RAW_MQandDP=184505,54;ReadPosRankSum=0.427 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098220 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098221 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098222 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098223 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098224 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098225 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098226 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098227 . T . . END=10098228 GT:DP:GQ:MIN_DP:PL ./.:18:30:18:0,30,450 ./.:31:0:30:0,0,0 +20 10098229 . A . . . GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:34:32:34:0,32,910 +20 10098230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:34:78:34:0,78,1170 +20 10098231 . A . . END=10098233 GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:37:84:36:0,84,1260 +20 10098234 . T . . END=10098236 GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:41:93:40:0,93,1395 +20 10098237 . A T, . . BaseQRankSum=6.000e-03;DP=47;ExcessHet=3.01;MQRankSum=-1.742e+00;RAW_MQandDP=159000,47;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 ./.:0,33,0:33:98:0|1:10098219_TATATATA_T:1345,98,0,1345,98,1345:0,0,16,17 +20 10098238 . A . . END=10098241 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:42:84:41:0,84,1260 +20 10098242 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:35:44:35:0,44,916 +20 10098243 . T . . END=10098244 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:42:81:39:0,81,1215 +20 10098245 . T . . END=10098248 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:42:81:39:0,81,1215 +20 10098249 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:9:0,18,270 ./.:36:0:36:0,0,662 +20 10098250 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:9:0,18,270 ./.:44:72:44:0,72,1080 +20 10098251 . A . . END=10098254 GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:44:72:44:0,72,1080 +20 10098255 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:36:52:36:0,52,897 +20 10098256 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:45:57:45:0,57,855 +20 10098257 . A . . END=10098260 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:48:0:47:0,0,405 +20 10098261 . T . . END=10098262 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:48:87:48:0,87,1305 +20 10098263 . T . . END=10098264 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:49:90:44:0,90,1350 +20 10098265 . T C, . . BaseQRankSum=1.83;DP=50;ExcessHet=3.01;MQRankSum=-1.834e+00;RAW_MQandDP=10564,6;ReadPosRankSum=0.00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:2,4,0:6:59:.:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 ./.:.:49:90:44:.:.:0,90,1350,90,1350,1350 +20 10098266 . A . . END=10098270 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:44:81:43:0,81,1215 +20 10098271 . A . . END=10098272 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:49:72:43:0,72,1080 +20 10098273 . A . . END=10098275 GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:49:72:43:0,72,1080 +20 10098276 . T . . END=10098278 GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:42:60:37:0,60,900 +20 10098279 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:37:54:37:0,54,810 +20 10098280 . A . . END=10098284 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,126 ./.:48:51:42:0,51,765 +20 10098285 . T . . END=10098288 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,126 ./.:43:45:41:0,45,675 +20 10098289 . A . . END=10098290 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,126 ./.:41:33:40:0,33,495 +20 10098291 . A . . END=10098292 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:42:27:41:0,27,405 +20 10098293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:29:24:29:0,24,360 +20 10098294 . T . . END=10098297 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:40:15:40:0,15,225 +20 10098298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:36:12:36:0,12,180 +20 10098299 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:39:9:39:0,9,135 +20 10098300 . T . . END=10098305 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:41:6:35:0,6,90 +20 10098306 . G . . END=10098307 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:32:3:27:0,3,45 +20 10098308 . AAT A, . . DP=35;ExcessHet=3.01;RAW_MQandDP=7200,2 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098309 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098310 . T *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,80 ./.:39:0:33:0,0,0 +20 10098312 . T . . END=10098321 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,80 ./.:40:72:37:0,72,1080 +20 10098322 . A . . END=10098327 GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,121 ./.:38:60:32:0,60,900 +20 10098328 . T . . END=10098329 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,169 ./.:38:60:32:0,60,900 +20 10098330 . A . . END=10098338 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:38:45:31:0,45,675 +20 10098339 . A . . END=10098342 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:35:0:33:0,0,217 +20 10098343 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:34:51:34:0,51,765 +20 10098344 . A . . . GT:DP:GQ:MIN_DP:PL ./.:4:0:4:0,0,1 ./.:32:0:32:0,0,0 +20 10098345 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:33:39:33:0,39,585 +20 10098346 . A . . END=10098348 GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:31:36:28:0,36,540 +20 10098349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:29:27:29:0,27,405 +20 10098350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:29:24:29:0,24,360 +20 10098351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:28:15:28:0,15,225 +20 10098352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:29:12:29:0,12,180 +20 10098353 . A . . END=10098356 GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:28:9:24:0,9,135 +20 10098357 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:23:6:23:0,6,90 +20 10098358 . T . . END=10098360 GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:9:0:2:0,0,0 +20 10098361 . T . . END=10098380 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:9:0:2:0,0,0 +20 10098381 . T . . END=10098431 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:9:0:2:0,0,0 +20 10098432 . A . . END=10098435 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:2:3:2:0,3,45 +20 10098436 . A . . END=10098454 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:0:0:0:0,0,0 +20 10098455 . A . . END=10098551 GT:DP:GQ:MIN_DP:PL ./.:0:0:0:0,0,0 ./.:0:0:0:0,0,0 +20 10098552 . T . . END=10098572 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:0:0:0:0,0,0 +20 10098573 . A . . END=10098574 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:9:21:9:0,21,315 +20 10098575 . A . . END=10098580 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:10:0:9:0,0,0 +20 10098581 . T . . END=10098586 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:12:27:11:0,27,405 +20 10098587 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:30:13:0,30,450 +20 10098588 . T . . END=10098594 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:27:13:0,27,405 +20 10098595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:14:13:0,14,365 +20 10098596 . A . . END=10098597 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:14:0,0,0 +20 10098598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,346 +20 10098599 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,374 +20 10098600 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,353 +20 10098601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,399 +20 10098602 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:17:14:0,17,415 +20 10098603 . T . . END=10098608 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:21:13:0,21,315 +20 10098609 . A . . END=10098612 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:18:14:0,18,270 +20 10098613 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:12:0:12:0,0,74 +20 10098614 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:18:13:0,18,270 +20 10098615 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:9:14:0,9,363 +20 10098616 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,363 +20 10098617 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:14:0,0,6 +20 10098618 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:9:14:0,9,356 +20 10098619 . T . . END=10098624 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:15:14:0,15,225 +20 10098625 . A . . END=10098626 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:10:15:0,10,384 +20 10098627 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,322 +20 10098628 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:10:15:0,10,380 +20 10098629 . G . . END=10098632 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:12:0,0,44 +20 10098633 . A . . END=10098636 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:27:14:0,27,405 +20 10098637 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:12:15:0,12,379 +20 10098638 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:14:9:14:0,9,359 +20 10098639 . T . . END=10098643 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:15:21:14:0,21,315 +20 10098644 . ATT A, . . DP=8;ExcessHet=3.01;RAW_MQandDP=8736,7 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098645 . T *, . . DP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098646 . T *, . . DP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:16:0:16:0,0,228 +20 10098648 . T . . END=10098650 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:18:33:17:0,33,495 +20 10098651 . A . . END=10098653 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:18:33:17:0,33,495 +20 10098654 . A . . END=10098657 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:17:0:17:0,0,155 +20 10098658 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:16:29:16:0,29,391 +20 10098659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:18:30:18:0,30,450 +20 10098660 . G A, . . DP=11;ExcessHet=3.01;RAW_MQandDP=16843,10 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:3:1:.:.:0,3,33,3,33,33 ./.:0,7,0:7:21:.:0|1:10098644_ATT_A:315,21,0,315,21,315:0,0,5,2 +20 10098661 . T . . END=10098666 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:20:24:19:0,24,360 +20 10098667 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:20:0:20:0,0,433 +20 10098668 . A AAT, . . DP=12;ExcessHet=3.01;RAW_MQandDP=20443,11 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:3:1:.:.:0,3,33,3,33,33 ./.:0,8,0:8:27:.:0|1:10098644_ATT_A:405,27,0,405,27,405:0,0,6,2 +20 10098669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:0:21:0,0,63 +20 10098670 . T . . END=10098671 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:9:21:0,9,135 +20 10098672 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:12:21:0,12,180 +20 10098673 . A . . END=10098674 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:21:12:21:0,12,180 +20 10098675 . A . . END=10098678 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:21:0:20:0,0,339 +20 10098679 . T . . END=10098682 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:22:18:21:0,18,270 +20 10098683 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:22:18:21:0,18,270 +20 10098684 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:20:15:20:0,15,225 +20 10098685 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:19:12:19:0,12,180 +20 10098686 . T . . END=10098688 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,150 ./.:19:9:19:0,9,135 +20 10098689 . GTA G, . . DP=21;ExcessHet=3.01;RAW_MQandDP=37368,17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098690 . T *, . . DP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098691 . A *, . . DP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,150 ./.:21:0:21:0,0,0 +20 10098693 . A . . END=10098696 GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,201 ./.:21:21:20:0,21,315 +20 10098697 . A . . END=10098700 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:21:20:0,21,315 +20 10098701 . T . . END=10098703 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:15:20:0,15,225 +20 10098704 . A G, . . DP=26;ExcessHet=3.01;RAW_MQandDP=48168,20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:6:18:6:.:.:0,18,231,18,231,231 ./.:0,16,0:16:54:.:0|1:10098644_ATT_A:810,54,0,810,54,810:0,0,11,5 +20 10098705 . T . . END=10098707 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:15:20:0,15,225 +20 10098708 . A . . END=10098712 GT:DP:GQ:MIN_DP:PL ./.:7:21:7:0,21,277 ./.:21:15:20:0,15,225 +20 10098713 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:0:8:0,0,262 ./.:21:15:20:0,15,225 +20 10098714 . T . . END=10098717 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:21:15:20:0,15,225 +20 10098718 . T . . END=10098719 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:6:20:0,6,90 +20 10098720 . A . . END=10098722 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:3:19:0,3,45 +20 10098723 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:10:8:0,10,265 ./.:20:3:19:0,3,45 +20 10098724 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:3:19:0,3,45 +20 10098725 . T . . END=10098728 GT:DP:GQ:MIN_DP:PL ./.:8:21:7:0,21,289 ./.:20:0:20:0,0,0 +20 10098729 . T TATATA, . . DP=32;ExcessHet=3.01;RAW_MQandDP=61892,23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:9:24:9:.:.:0,24,360,24,360,360 ./.:0,19,0:19:57:.:0|1:10098644_ATT_A:855,57,0,855,57,855:0,0,12,7 +20 10098730 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:0:20:0,0,0 +20 10098731 . T . . END=10098732 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:27:20:0,27,405 +20 10098733 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:9:9:0,9,309 ./.:20:0:20:0,0,493 +20 10098734 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:0:20:0,0,493 +20 10098735 . T . . END=10098737 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:27:20:0,27,405 +20 10098738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:23:20:0,23,595 +20 10098739 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,353 ./.:17:27:17:0,27,405 +20 10098740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,353 ./.:15:18:15:0,18,270 +20 10098741 . A . . END=10098748 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:15:18:15:0,18,270 +20 10098749 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:16:12:15:0,12,180 +20 10098750 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:0:9:0,0,289 ./.:16:12:15:0,12,180 +20 10098751 . T . . END=10098754 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:16:12:15:0,12,180 +20 10098755 . T . . END=10098756 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:18:9:16:0,9,135 +20 10098757 . T . . END=10098761 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,343 ./.:18:9:16:0,9,135 +20 10098762 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:3:18:0,3,45 +20 10098763 . T . . END=10098770 GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:20:3:18:0,3,45 +20 10098771 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:21:0:20:0,0,0 +20 10098772 . T . . END=10098775 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:21:0:20:0,0,0 +20 10098776 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:21:3:20:0,3,45 +20 10098777 . A . . END=10098778 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:21:3:20:0,3,45 +20 10098779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:10:0,18,270 ./.:21:3:20:0,3,45 +20 10098780 . T . . END=10098782 GT:DP:GQ:MIN_DP:PL ./.:10:18:10:0,18,270 ./.:21:6:21:0,6,90 +20 10098783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:15:9:0,15,225 ./.:22:9:22:0,9,135 +20 10098784 . TAC T, . . DP=19;ExcessHet=3.01;RAW_MQandDP=33076,10 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:18:9:0,18,270,18,270,270 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098785 . A *, . . DP=19 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:18:9:0,18,270,18,270,270 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098786 . C *, . . DP=19 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:0:9:0,0,168,0,168,168 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098787 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:18:9:0,18,270 ./.:21:0:21:0,0,0 +20 10098788 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:18:22:18:0,22,489 +20 10098789 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:20:60:20:0,60,635 +20 10098790 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:41:22:0,41,590 +20 10098791 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:63:22:0,63,945 +20 10098792 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:48:22:0,48,586 +20 10098793 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:23:35:23:0,35,612 +20 10098794 . T . . END=10098797 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:63:24:0,63,945 +20 10098798 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:43:24:0,43,722 +20 10098799 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:63:24:0,63,945 +20 10098800 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:23:42:23:0,42,612 +20 10098801 . T . . END=10098802 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,326 ./.:22:60:22:0,60,900 +20 10098803 . T . . END=10098804 GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:22:60:22:0,60,900 +20 10098805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:22:33:22:0,33,541 +20 10098806 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:24:57:24:0,57,855 +20 10098807 . T . . END=10098808 GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:25:60:24:0,60,900 +20 10098809 . T . . . GT:DP:GQ:MIN_DP:PL ./.:13:33:13:0,33,495 ./.:25:57:25:0,57,855 +20 10098810 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:24:56:24:0,56,711 +20 10098811 . T . . END=10098815 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:27:61:24:0,61,699 +20 10098816 . T . . END=10098818 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:27:61:24:0,61,699 +20 10098819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:45:15:0,45,597 ./.:23:51:23:0,51,685 +20 10098820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:48:16:0,48,624 ./.:25:72:25:0,72,1080 +20 10098821 . T . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:72:25:0,72,1080 +20 10098822 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:50:25:0,50,702 +20 10098823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:72:25:0,72,1080 +20 10098824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:25:72:25:0,72,1080 +20 10098825 . G . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:23:69:23:0,69,710 +20 10098826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:25:72:25:0,72,1080 +20 10098827 . T . . . GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,752 ./.:26:60:25:0,60,900 +20 10098828 . T . . END=10098833 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,799 ./.:26:60:25:0,60,900 +20 10098834 . T . . END=10098835 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,799 ./.:26:51:26:0,51,765 +20 10098836 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:27:45:27:0,45,675 +20 10098837 . T . . END=10098838 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:27:42:26:0,42,630 +20 10098839 . C . . END=10098841 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:26:36:25:0,36,540 +20 10098842 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:26:36:25:0,36,540 +20 10098843 . A . . END=10098851 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:26:33:23:0,33,495 +20 10098852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:27:30:27:0,30,450 +20 10098853 . G . . END=10098857 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:27:27:27:0,27,405 +20 10098858 . G . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:26:24:25:0,24,360 +20 10098859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:29:24:0,29,851 ./.:26:24:25:0,24,360 +20 10098860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:69:23:0,69,881 ./.:27:21:27:0,21,315 +20 10098861 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,960 ./.:27:18:27:0,18,270 +20 10098862 . T . . END=10098866 GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,960 ./.:30:15:28:0,15,225 +20 10098867 . T . . END=10098868 GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,960 ./.:32:9:30:0,9,135 +20 10098869 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,902 ./.:32:9:30:0,9,135 +20 10098870 . G . . END=10098873 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,902 ./.:32:6:32:0,6,90 +20 10098874 . A . . END=10098877 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,902 ./.:33:3:32:0,3,45 +20 10098878 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:78:30:0,78,1170 ./.:33:3:32:0,3,45 +20 10098879 . A . . END=10098880 GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:33:3:32:0,3,45 +20 10098881 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:33:6:32:0,6,90 +20 10098882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:60:32:0,60,1207 ./.:33:6:32:0,6,90 +20 10098883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:56:32:0,56,1237 ./.:33:6:32:0,6,90 +20 10098884 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:32:0,84,1260 ./.:33:6:32:0,6,90 +20 10098885 . C CA, . . BaseQRankSum=0.165;DP=61;ExcessHet=3.01;MQRankSum=-4.449e+00;RAW_MQandDP=183016,61;ReadPosRankSum=-1.073e+00 GT:AD:DP:GQ:PL:SB ./.:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 ./.:0,29,0:29:87:1163,87,0,1163,87,1163:0,0,16,13 +20 10098886 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:33:0:33:0,0,0 +20 10098887 . C . . END=10098888 GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:35:99:34:0,102,1027 +20 10098889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:32:96:32:0,96,972 +20 10098890 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:34:99:33:0,99,918 +20 10098891 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:34:99:33:0,99,918 +20 10098892 . G . . END=10098893 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:99:33:0,99,918 +20 10098894 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:31:76:31:0,76,929 +20 10098895 . T . . END=10098896 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:99:33:0,99,1041 +20 10098897 . C . . END=10098898 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:33:96:32:0,96,995 +20 10098899 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:35:99:35:0,99,1485 +20 10098900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:96:34:0,96,1440 +20 10098901 . T . . END=10098902 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:96:34:0,96,1440 +20 10098903 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:33:87:33:0,87,955 +20 10098904 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:96:34:0,96,1440 +20 10098905 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:89:34:0,89,1030 +20 10098906 . C . . END=10098907 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:33:90:32:0,90,1350 +20 10098908 . C . . END=10098915 GT:DP:GQ:MIN_DP:PL ./.:27:60:25:0,60,900 ./.:33:90:32:0,90,1350 +20 10098916 . A . . END=10098918 GT:DP:GQ:MIN_DP:PL ./.:27:60:25:0,60,900 ./.:31:81:27:0,81,858 +20 10098919 . C . . END=10098923 GT:DP:GQ:MIN_DP:PL ./.:23:54:21:0,54,810 ./.:31:81:27:0,81,858 +20 10098924 . G . . END=10098926 GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:31:81:27:0,81,858 +20 10098927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:45:20:0,45,675 ./.:31:81:27:0,81,858 +20 10098928 . A . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:31:81:27:0,81,858 +20 10098929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:26:78:26:0,78,826 +20 10098930 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:28:81:27:0,81,814 +20 10098931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:28:81:27:0,81,814 +20 10098932 . G . . END=10098937 GT:DP:GQ:MIN_DP:PL ./.:21:45:19:0,45,675 ./.:28:81:27:0,81,814 +20 10098938 . A . . END=10098940 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:28:81:27:0,81,814 +20 10098941 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:28:81:27:0,81,814 +20 10098942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:23:63:23:0,63,945 ./.:28:81:27:0,81,814 +20 10098943 . T . . . GT:DP:GQ:MIN_DP:PL ./.:21:52:21:0,52,766 ./.:27:70:27:0,70,840 +20 10098944 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,867 ./.:27:81:27:0,81,869 +20 10098945 . T C, . . BaseQRankSum=1.48;DP=48;ExcessHet=3.01;MQRankSum=-2.504e+00;RAW_MQandDP=148542,48;ReadPosRankSum=1.04 GT:AD:DP:GQ:PL:SB ./.:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 ./.:0,25,0:25:75:793,75,0,793,75,793:0,0,13,12 +20 10098946 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,872 ./.:28:81:28:0,81,1215 +20 10098947 . T . . . GT:DP:GQ:MIN_DP:PL ./.:22:55:22:0,55,842 ./.:27:75:27:0,75,1125 +20 10098948 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,897 ./.:27:75:27:0,75,1125 +20 10098949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,937 ./.:28:69:28:0,69,1035 +20 10098950 . C . . END=10098951 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,937 ./.:29:72:28:0,72,1080 +20 10098952 . C . . END=10098953 GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:29:72:28:0,72,1080 +20 10098954 . A . . END=10098955 GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:30:66:29:0,66,990 +20 10098956 . A . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:30:66:29:0,66,990 +20 10098957 . C . . END=10098959 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:30:72:29:0,72,1080 +20 10098960 . G . . END=10098961 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:69:28:0,69,1035 +20 10098962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:72:29:0,72,1080 +20 10098963 . T . . END=10098966 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:28:69:27:0,69,1035 +20 10098967 . T . . END=10098971 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:28:72:28:0,72,1080 +20 10098972 . T . . END=10098983 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:81:28:0,81,866 +20 10098984 . A . . END=10098986 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:33:90:31:0,90,977 +20 10098987 . C T, . . BaseQRankSum=3.13;DP=55;ExcessHet=3.01;MQRankSum=-2.734e+00;RAW_MQandDP=64586,24;ReadPosRankSum=0.436 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:11,13,0:24:99:.:408,0,350,441,389,830:9,2,13,0 ./.:.:33:90:31:0,90,977,90,977,977 +20 10098988 . G . . END=10099008 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:33:90:31:0,90,977 +20 10099009 . G . . END=10099010 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:31:87:30:0,87,1305 +20 10099011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:31:77:31:0,77,941 +20 10099012 . T . . END=10099016 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:30:87:30:0,87,1305 +20 10099017 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,950 ./.:30:87:30:0,87,1305 +20 10099018 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,950 ./.:31:90:31:0,90,1350 +20 10099019 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:31:87:31:0,87,1305 +20 10099020 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:32:90:32:0,90,1350 +20 10099021 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:32:90:32:0,90,1350 +20 10099022 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:69:25:0,69,1035 ./.:32:90:32:0,90,1350 +20 10099023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:32:87:32:0,87,1305 +20 10099024 . C . . END=10099025 GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:33:90:33:0,90,1350 +20 10099026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:33:83:33:0,83,1048 +20 10099027 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:32:90:32:0,90,1350 +20 10099028 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:69:28:0,69,1035 ./.:33:88:33:0,88,999 +20 10099029 . T C, . . BaseQRankSum=-1.809e+00;DP=57;ExcessHet=3.01;MQRankSum=-3.641e+00;RAW_MQandDP=181311,57;ReadPosRankSum=-1.224e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 ./.:0,29,0:29:87:0|1:10099029_T_C:1277,87,0,1277,87,1277:0,0,17,12 +20 10099030 . C . . END=10099031 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:32:90:31:0,90,1350 +20 10099032 . T . . END=10099033 GT:DP:GQ:MIN_DP:PL ./.:28:63:28:0,63,945 ./.:31:87:31:0,87,1305 +20 10099034 . C A, . . BaseQRankSum=2.76;DP=55;ExcessHet=3.01;MQRankSum=-3.641e+00;RAW_MQandDP=174111,55;ReadPosRankSum=-1.850e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 ./.:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,17,10 +20 10099035 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:87:31:0,87,1305 +20 10099036 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:32:90:32:0,90,1350 +20 10099037 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:82:31:0,82,961 +20 10099038 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:30:90:30:0,90,972 +20 10099039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:81:31:0,81,924 +20 10099040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:26:51:26:0,51,765 ./.:31:81:31:0,81,924 +20 10099041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:54:27:0,54,810 ./.:31:81:31:0,81,924 +20 10099042 . T . . END=10099043 GT:DP:GQ:MIN_DP:PL ./.:26:57:24:0,57,855 ./.:31:81:31:0,81,924 +20 10099044 . A C, . . BaseQRankSum=-1.148e+00;DP=51;ExcessHet=3.01;MQRankSum=-4.418e+00;RAW_MQandDP=151645,51;ReadPosRankSum=-2.207e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 ./.:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,18,9 +20 10099045 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:24:0,60,900 ./.:32:84:32:0,84,1260 +20 10099046 . T C, . . BaseQRankSum=-2.165e+00;DP=51;ExcessHet=3.01;MQRankSum=-4.418e+00;RAW_MQandDP=151645,51;ReadPosRankSum=-2.297e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 ./.:0,27,0:27:84:0|1:10099029_T_C:1260,84,0,1260,84,1260:0,0,18,9 +20 10099047 . G . . END=10099050 GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:32:84:31:0,84,1260 +20 10099051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:31:67:31:0,67,886 +20 10099052 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:32:84:31:0,84,1260 +20 10099053 . G . . END=10099054 GT:DP:GQ:MIN_DP:PL ./.:23:54:23:0,54,810 ./.:32:84:31:0,84,1260 +20 10099055 . T C, . . BaseQRankSum=-1.554e+00;DP=54;ExcessHet=3.01;MQRankSum=-4.316e+00;RAW_MQandDP=164749,54;ReadPosRankSum=-1.970e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 ./.:0,30,0:30:90:0|1:10099029_T_C:1350,90,0,1350,90,1350:0,0,20,10 +20 10099056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:35:87:35:0,87,1305 +20 10099057 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:34:76:34:0,76,995 +20 10099058 . C . . END=10099061 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:34:87:32:0,87,1305 +20 10099062 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,921 ./.:34:73:34:0,73,1018 +20 10099063 . G . . END=10099067 GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,921 ./.:34:84:33:0,84,1260 +20 10099068 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1042 ./.:34:84:33:0,84,1260 +20 10099069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1042 ./.:36:45:36:0,45,935 +20 10099070 . G . . END=10099072 GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1042 ./.:37:81:36:0,81,1215 +20 10099073 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:37:81:36:0,81,1215 +20 10099074 . A . . END=10099077 GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:39:72:38:0,72,1080 +20 10099078 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:39:72:38:0,72,1080 +20 10099079 . C T, . . BaseQRankSum=1.43;DP=61;ExcessHet=3.01;MQRankSum=-2.821e+00;RAW_MQandDP=188962,61;ReadPosRankSum=0.969 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 ./.:0,31,0:31:96:0|1:10099029_T_C:1386,96,0,1386,96,1386:0,0,20,11 +20 10099080 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:36:72:36:0,72,1080 +20 10099081 . T . . END=10099087 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:39:66:37:0,66,990 +20 10099088 . C . . END=10099089 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:36:54:35:0,54,810 +20 10099090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:36:54:35:0,54,810 +20 10099091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:37:45:37:0,45,675 +20 10099092 . A . . END=10099094 GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:37:39:36:0,39,585 +20 10099095 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:39:36:37:0,36,540 +20 10099096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:35:74:35:0,74,1310 ./.:39:36:37:0,36,540 +20 10099097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:41:25:41:0,25,1062 +20 10099098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:30:40:0,30,1027 +20 10099099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:6:40:0,6,1033 +20 10099100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:38:30:38:0,30,450 +20 10099101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:3:34:0,3,826 +20 10099102 . G . . END=10099104 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:38:30:36:0,30,450 +20 10099105 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:39:33:38:0,33,495 +20 10099106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:39:33:38:0,33,495 +20 10099107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,99,1485 ./.:36:0:36:0,0,787 +20 10099108 . T . . END=10099109 GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,99,1485 ./.:38:30:38:0,30,450 +20 10099110 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,99,1485 ./.:36:0:36:0,0,675 +20 10099111 . T TTTTGTTTG, . . BaseQRankSum=-1.207e+00;DP=70;ExcessHet=3.01;MQRankSum=-4.071e+00;RAW_MQandDP=209146,70;ReadPosRankSum=-2.730e-01 GT:AD:DP:GQ:PL:SB ./.:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 ./.:0,23,0:23:72:1041,72,0,1042,72,1042:0,0,12,11 +20 10099112 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:38:0:38:0,0,97 +20 10099113 . T . . END=10099114 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:75:38:0,75,1125 +20 10099115 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:36:60:36:0,60,948 +20 10099116 . T . . END=10099117 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:78:38:0,78,1170 +20 10099118 . T . . END=10099124 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:40:81:36:0,81,1215 +20 10099125 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:40:47:40:0,47,1084 +20 10099126 . T . . END=10099129 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:90:37:0,90,1350 +20 10099130 . T . . END=10099131 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:41:0:40:0,0,709 +20 10099132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:40:99:40:0,105,1575 +20 10099133 . T . . END=10099134 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:93:37:0,93,1099 +20 10099135 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:42:87:42:0,87,1228 +20 10099136 . T . . END=10099139 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:41:99:40:0,117,1755 +20 10099140 . G T, . . BaseQRankSum=-1.140e-01;DP=95;ExcessHet=3.01;MQRankSum=-2.469e+00;RAW_MQandDP=307130,95;ReadPosRankSum=0.338 GT:AD:DP:GQ:PL:SB ./.:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 ./.:0,31,0:31:93:1030,93,0,1030,93,1030:0,0,15,16 +20 10099141 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:90:40:0,90,1214 +20 10099142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:22:41:0,22,1104 +20 10099143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:18:39:0,18,1000 +20 10099144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:41:39:0,41,1059 +20 10099145 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:57:40:0,57,1094 +20 10099146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:99:40:0,117,1755 +20 10099147 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:52:40:0,52,1104 +20 10099148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:84:39:0,84,1147 +20 10099149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:50:39:0,50,1017 +20 10099150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:37:42:37:0,42,929 +20 10099151 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:78:41:0,78,1156 +20 10099152 . T . . END=10099163 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:99:39:0,105,1171 +20 10099164 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:86:39:0,86,1098 +20 10099165 . C . . END=10099180 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:42:99:38:0,103,1092 +20 10099181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:90:41:0,90,1188 +20 10099182 . T . . END=10099189 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:43:99:43:0,104,1261 +20 10099190 . G T, . . BaseQRankSum=-3.400e-02;DP=103;ExcessHet=3.01;MQRankSum=-1.711e+00;RAW_MQandDP=349360,103;ReadPosRankSum=-1.260e+00 GT:AD:DP:GQ:PL:SB ./.:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 ./.:0,36,0:36:99:1147,108,0,1147,108,1147:0,0,19,17 +20 10099191 . C . . END=10099193 GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:43:99:43:0,111,1665 +20 10099194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:44:98:44:0,98,1300 +20 10099195 . G . . END=10099215 GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:38:99:33:0,99,947 +20 10099216 . C . . END=10099219 GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:34:96:33:0,96,1440 +20 10099220 . A G, . . BaseQRankSum=-1.664e+00;DP=76;ExcessHet=3.01;MQRankSum=-2.596e+00;RAW_MQandDP=261077,76;ReadPosRankSum=0.629 GT:AD:DP:GQ:PL:SB ./.:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 ./.:0,30,0:30:89:924,89,0,924,89,924:0,0,15,15 +20 10099221 . T . . END=10099223 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:34:96:33:0,96,1440 +20 10099224 . A . . END=10099225 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:99:35:0,99,1485 +20 10099226 . G . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:77:35:0,77,1066 +20 10099227 . C . . END=10099229 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:99:33:0,99,1017 +20 10099230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:35:99:33:0,99,1017 +20 10099231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:36:95:36:0,95,1108 +20 10099232 . C . . END=10099233 GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:37:99:35:0,99,1080 +20 10099234 . T . . END=10099235 GT:DP:GQ:MIN_DP:PL ./.:44:87:44:0,87,1305 ./.:37:99:35:0,99,1080 +20 10099236 . T . . END=10099238 GT:DP:GQ:MIN_DP:PL ./.:41:90:39:0,90,1350 ./.:37:99:35:0,99,1080 +20 10099239 . C . . END=10099241 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:37:99:35:0,99,1080 +20 10099242 . A . . END=10099246 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:35:90:32:0,90,1350 +20 10099247 . C . . END=10099248 GT:DP:GQ:MIN_DP:PL ./.:37:93:36:0,93,1395 ./.:35:90:32:0,90,1350 +20 10099249 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:87:36:0,87,1305 ./.:35:90:32:0,90,1350 +20 10099250 . G A, . . BaseQRankSum=3.17;DP=69;ExcessHet=3.01;MQRankSum=-2.272e+00;RAW_MQandDP=119006,37;ReadPosRankSum=0.583 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:16,21,0:37:99:.:728,0,424,776,487,1263:12,4,11,10 ./.:.:35:90:32:0,90,1350,90,1350,1350 +20 10099251 . A . . END=10099252 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:35:90:32:0,90,1350 +20 10099253 . T . . END=10099256 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:87:31:0,87,1305 +20 10099257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:90:32:0,90,1350 +20 10099258 . G . . END=10099260 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:87:32:0,87,1305 +20 10099261 . A . . END=10099264 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:34:90:33:0,90,1350 +20 10099265 . C . . END=10099269 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:35:99:34:0,99,1485 +20 10099270 . A C, . . BaseQRankSum=-2.866e+00;DP=62;ExcessHet=3.01;MQRankSum=-2.691e+00;RAW_MQandDP=98268,30;ReadPosRankSum=-1.380e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,3,0:30:60:.:0,60,1084,81,1092,1113:19,8,0,3 ./.:.:34:90:32:0,90,1033,90,1033,1033 +20 10099271 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:31:0,84,1260 ./.:34:90:32:0,90,1033 +20 10099272 . C . . END=10099296 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:90:32:0,90,1033 +20 10099297 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10099298 . A . . END=10099303 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:93:34:0,93,1395 +20 10099304 . T . . END=10099312 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:99:33:0,99,1074 +20 10099313 . A . . END=10099314 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:83:35:0,83,1066 +20 10099315 . G . . END=10099319 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:92:35:0,92,1093 +20 10099320 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10099321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:77:37:0,77,1046 +20 10099322 . C . . END=10099323 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10099324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:88:37:0,88,1130 +20 10099325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10099326 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:71:35:0,71,1075 +20 10099327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:94:35:0,94,1117 +20 10099328 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10099329 . T . . END=10099334 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:90:34:0,90,1092 +20 10099335 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:88:35:0,88,1093 +20 10099336 . G . . END=10099343 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:90:33:0,90,1350 +20 10099344 . T . . END=10099345 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:80:32:0,80,988 +20 10099346 . G . . END=10099347 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:93:32:0,93,1395 +20 10099348 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:30:76:30:0,76,856 +20 10099349 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:31:82:31:0,82,967 +20 10099350 . T . . END=10099351 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:93:31:0,93,979 +20 10099352 . C . . END=10099354 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:99:33:0,99,1049 +20 10099355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:86:34:0,86,1034 +20 10099356 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:96:32:0,96,1035 +20 10099357 . C . . END=10099358 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:99:33:0,99,1047 +20 10099359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:91:34:0,91,1061 +20 10099360 . C . . END=10099366 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:99:33:0,99,1046 +20 10099367 . T . . END=10099375 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:92:31:0,92,979 +20 10099376 . C . . END=10099379 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10099380 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:85:36:0,85,1107 +20 10099381 . C . . END=10099382 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:95:37:0,95,1138 +20 10099383 . T . . END=10099411 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:99:35:0,99,1159 +20 10099412 . C . . END=10099415 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:96:36:0,96,1440 +20 10099416 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:76:36:0,76,1088 +20 10099417 . G . . END=10099429 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:90:32:0,90,1350 +20 10099430 . A . . END=10099432 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,102,1530 +20 10099433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:92:37:0,92,1144 +20 10099434 . G . . END=10099531 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:44:99:37:0,100,1153 +20 10099532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:41:84:41:0,84,1217 +20 10099533 . A . . END=10099534 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:41:99:40:0,111,1665 +20 10099535 . G A, . . BaseQRankSum=5.03;DP=104;ExcessHet=3.01;MQRankSum=-1.418e+00;RAW_MQandDP=366651,104;ReadPosRankSum=-7.770e-01 GT:AD:DP:GQ:PL:SB ./.:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 ./.:0,38,0:38:99:1255,114,0,1255,114,1255:0,0,18,20 +20 10099536 . T . . END=10099556 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:39:99:38:0,103,1189 +20 10099557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:38:81:38:0,81,1104 +20 10099558 . A . . END=10099562 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:40:99:40:0,117,1755 +20 10099563 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:38:88:38:0,88,1182 +20 10099564 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:42:99:42:0,120,1800 +20 10099565 . C T, . . BaseQRankSum=4.60;DP=113;ExcessHet=3.01;MQRankSum=-1.266e+00;RAW_MQandDP=401810,113;ReadPosRankSum=1.23 GT:AD:DP:GQ:PL:SB ./.:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 ./.:0,43,0:43:99:1344,128,0,1344,128,1344:0,0,19,24 +20 10099566 . T . . END=10099599 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:45:99:42:0,113,1225 +20 10099600 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:44:90:44:0,90,1228 +20 10099601 . A . . END=10099606 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:45:99:41:0,117,1755 +20 10099607 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:42:73:42:0,73,1169 +20 10099608 . A . . END=10099623 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:41:99:40:0,104,1124 +20 10099624 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:40:86:40:0,86,1120 +20 10099625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:40:99:40:0,103,1186 +20 10099626 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:96:39:0,96,1440 +20 10099627 . A . . END=10099637 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:99:38:0,99,1222 +20 10099638 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:36:97:36:0,97,1095 +20 10099639 . A . . END=10099640 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:36:99:36:0,105,1575 +20 10099641 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:37:88:37:0,88,1087 +20 10099642 . C . . END=10099704 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:99:36:0,99,1087 +20 10099705 . A . . END=10099714 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:35:93:34:0,93,1395 +20 10099715 . G . . END=10099716 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:73:31:0,73,878 +20 10099717 . C . . END=10099724 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:81:31:0,81,1215 +20 10099725 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:90:33:0,90,1350 +20 10099726 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:66:33:0,66,958 +20 10099727 . C . . END=10099728 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:31:81:31:0,81,1215 +20 10099729 . T . . END=10099734 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:74:30:0,74,905 +20 10099735 . T . . END=10099737 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:81:31:0,81,1215 +20 10099738 . A . . END=10099739 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:78:30:0,78,1170 +20 10099740 . C . . END=10099741 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:81:30:0,81,1215 +20 10099742 . T . . END=10099743 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:72:29:0,72,873 +20 10099744 . A . . END=10099747 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:81:29:0,81,1215 +20 10099748 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:29:75:29:0,75,859 +20 10099749 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:31:90:31:0,90,1350 +20 10099750 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:81:33:0,81,985 +20 10099751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099752 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:96:32:0,96,953 +20 10099753 . C . . END=10099754 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099755 . C T, . . BaseQRankSum=1.55;DP=99;ExcessHet=3.01;MQRankSum=-2.200e-02;RAW_MQandDP=351410,99;ReadPosRankSum=-2.300e-01 GT:AD:DP:GQ:PL:SB ./.:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 ./.:0,32,0:32:95:979,95,0,979,95,979:0,0,13,19 +20 10099756 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:89:34:0,89,1001 +20 10099757 . T . . END=10099760 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:90:32:0,90,1025 +20 10099761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:82:33:0,82,991 +20 10099762 . G . . END=10099763 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:93:32:0,93,1395 +20 10099764 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:60:33:0,60,897 +20 10099765 . G . . END=10099768 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:93:32:0,93,1395 +20 10099769 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:82:33:0,82,943 +20 10099770 . A . . END=10099772 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:90:33:0,90,1350 +20 10099773 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:87:34:0,87,931 +20 10099774 . A . . END=10099776 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:93:35:0,93,1395 +20 10099777 . A . . END=10099780 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:36:0,99,1485 +20 10099781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:36:96:36:0,96,1058 +20 10099782 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:99:35:0,99,1485 +20 10099783 . T . . END=10099790 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:91:34:0,91,1041 +20 10099791 . A . . END=10099792 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:36:0,99,1077 +20 10099793 . T . . END=10099797 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:93:35:0,93,1085 +20 10099798 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:89:35:0,89,1074 +20 10099799 . T . . END=10099800 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:36:93:35:0,93,1395 +20 10099801 . A . . END=10099804 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:35:0,99,1485 +20 10099805 . A . . END=10099807 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:96:34:0,96,1440 +20 10099808 . G . . END=10099809 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:99:35:0,99,1485 +20 10099810 . C . . END=10099812 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:91:34:0,91,992 +20 10099813 . C . . END=10099814 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:81:32:0,81,926 +20 10099815 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:85:34:0,85,992 +20 10099817 . A . . END=10099820 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:99:34:0,102,1064 +20 10099821 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:84:35:0,84,1039 +20 10099822 . G . . END=10099825 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:36:99:35:0,102,1530 +20 10099826 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:76:35:0,76,1018 +20 10099827 . A . . END=10099831 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:36:0,102,1530 +20 10099832 . A G, . . BaseQRankSum=-4.563e+00;DP=108;ExcessHet=3.01;MQRankSum=0.869;RAW_MQandDP=379876,108;ReadPosRankSum=-1.023e+00 GT:AD:DP:GQ:PL:SB ./.:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 ./.:0,36,0:36:99:1112,108,0,1112,108,1112:0,0,16,20 +20 10099833 . T . . END=10099850 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:99:33:0,99,1050 +20 10099851 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:87:35:0,87,1040 +20 10099852 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099853 . G . . END=10099856 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:96:34:0,96,1440 +20 10099857 . G . . END=10099859 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:99:34:0,99,1485 +20 10099860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:91:34:0,91,1044 +20 10099861 . G . . END=10099862 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:33:0,99,1037 +20 10099863 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:96:34:0,96,1440 +20 10099864 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099865 . T . . END=10099867 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:92:34:0,92,1059 +20 10099868 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:91:37:0,91,1121 +20 10099870 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099871 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:97:37:0,97,1094 +20 10099872 . T . . END=10099881 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:99:34:0,99,996 +20 10099882 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:95:37:0,95,1132 +20 10099883 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099884 . A . . END=10099903 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:90:31:0,90,983 +20 10099904 . A . . END=10099906 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:99:33:0,99,1052 +20 10099907 . A . . END=10099909 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:96:32:0,96,953 +20 10099910 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:78:32:0,78,933 +20 10099911 . T . . END=10099912 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:90:33:0,90,1350 +20 10099913 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:60:34:0,60,980 +20 10099914 . T . . END=10099919 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:90:35:0,90,1350 +20 10099920 . T . . END=10099923 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:87:35:0,87,1305 +20 10099924 . A . . END=10099930 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:90:31:0,90,1350 +20 10099931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:76:31:0,76,925 +20 10099932 . T . . END=10099933 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:87:31:0,87,1305 +20 10099934 . A . . END=10099936 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:90:32:0,90,1350 +20 10099937 . A . . END=10099942 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:81:31:0,81,1215 +20 10099943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:78:31:0,78,1170 +20 10099944 . C . . END=10099968 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:81:29:0,81,1215 +20 10099969 . A . . . 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T . . END=10000068 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:47:99:42:0,117,1341 +20 10000069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:43:96:43:0,96,1270 +20 10000070 . A . . END=10000116 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:46:99:43:0,109,1311 +20 10000117 . C T, . . BaseQRankSum=2.14;DP=107;ExcessHet=3.01;MQRankSum=0.913;RAW_MQandDP=228169,64;ReadPosRankSum=-2.230e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,28,0:64:99:.:934,0,1248,1042,1332,2374:16,20,19,9 ./.:.:46:99:43:0,109,1311,109,1311,1311 +20 10000118 . T . . END=10000130 GT:DP:GQ:MIN_DP:PL ./.:52:99:44:0,108,1620 ./.:46:99:43:0,109,1311 +20 10000131 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:99:44:0,108,1620 ./.:49:91:49:0,91,1394 +20 10000132 . T . . END=10000210 GT:DP:GQ:MIN_DP:PL ./.:52:99:44:0,108,1620 ./.:52:99:46:0,115,1456 +20 10000211 . C T, . . BaseQRankSum=1.87;DP=99;ExcessHet=3.01;MQRankSum=1.06;RAW_MQandDP=188569,53;ReadPosRankSum=0.703 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:26,27,0:53:99:.:970,0,906,1049,988,2036:15,11,11,16 ./.:.:52:99:46:0,115,1456,115,1456,1456 +20 10000212 . A . . END=10000332 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:52:99:46:0,115,1456 +20 10000333 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:46:88:46:0,88,1303 +20 10000334 . C . . END=10000355 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:45:99:44:0,109,1467 +20 10000356 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:45:78:45:0,78,1246 +20 10000357 . T . . END=10000373 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:45:99:43:0,99,1485 +20 10000374 . A . . END=10000377 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:96:41:0,96,1440 +20 10000378 . T . . END=10000380 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:99:39:0,99,1485 +20 10000381 . A . . END=10000383 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:90:35:0,90,1350 +20 10000384 . A . . END=10000386 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:86:34:0,86,1023 +20 10000387 . T . . END=10000388 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:75:34:0,75,1125 +20 10000389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:54:34:0,54,870 +20 10000390 . T . . END=10000391 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:78:32:0,78,1170 +20 10000392 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:63:32:0,63,884 +20 10000393 . A . . END=10000395 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:80:32:0,80,924 +20 10000396 . T . . END=10000400 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:76:30:0,76,906 +20 10000401 . T . . END=10000402 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:80:31:0,80,993 +20 10000403 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10000404 . T . . END=10000405 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:86:33:0,86,1022 +20 10000406 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,1350 +20 10000407 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:78:32:0,78,980 +20 10000408 . A . . END=10000416 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:81:29:0,81,984 +20 10000417 . G . . END=10000418 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:26:75:25:0,75,751 +20 10000419 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:27:62:27:0,62,788 +20 10000420 . A . . END=10000422 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10000423 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10000424 . A . . END=10000429 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10000430 . A . . END=10000431 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:28:62:27:0,62,843 +20 10000432 . A . . END=10000433 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:28:81:27:0,81,872 +20 10000434 . T . . END=10000436 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10000437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:67:29:0,67,855 +20 10000438 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:75:29:0,75,1125 +20 10000439 . T G, . . DP=107;ExcessHet=3.01;RAW_MQandDP=376276,107 GT:AD:DP:GQ:PL:SB ./.:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 ./.:0,27,0:27:80:716,80,0,716,80,716:0,0,19,8 +20 10000440 . T . . END=10000445 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:29:70:26:0,70,886 +20 10000446 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:26:58:26:0,58,812 +20 10000447 . A . . END=10000453 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:26:72:25:0,72,779 +20 10000454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:27:60:27:0,60,795 +20 10000455 . A . . END=10000460 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:27:78:26:0,78,834 +20 10000461 . T . . END=10000464 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:28:81:27:0,81,840 +20 10000465 . T . . END=10000466 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10000467 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:89:36:0,89,1053 +20 10000468 . G . . END=10000469 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:96:36:0,96,1003 +20 10000470 . A . . END=10000471 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,105,1038 +20 10000472 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:96:36:0,96,1074 +20 10000473 . T . . END=10000482 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,105,1062 +20 10000483 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:38:98:38:0,98,1096 +20 10000484 . A . . END=10000501 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:40:99:38:0,108,1620 +20 10000502 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:81:41:0,81,1156 +20 10000503 . A . . END=10000527 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:39:99:38:0,105,1147 +20 10000528 . C . . END=10000529 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:38:91:38:0,91,1074 +20 10000530 . G . . END=10000533 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:38:99:36:0,105,1135 +20 10000534 . T C, . . BaseQRankSum=-2.640e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=126000,35;ReadPosRankSum=-3.830e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:55:99:41:0,102,1530,102,1530,1530 ./.:19,16,0:35:99:.:336,0,521,393,568,962:11,8,8,8 +20 10000535 . G . . END=10000538 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:99:39:0,104,1184 +20 10000539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:95:41:0,95,1194 +20 10000540 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:85:41:0,85,1159 +20 10000541 . T . . END=10000543 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:42:99:42:0,105,1575 +20 10000544 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:89:41:0,89,1162 +20 10000545 . G . . END=10000547 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:41:99:40:0,102,1530 +20 10000548 . C . . END=10000550 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:40:80:38:0,80,975 +20 10000551 . T . . END=10000552 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:77:37:0,77,1088 +20 10000553 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:99:37:0,99,1485 +20 10000554 . C . . END=10000556 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:63:37:0,63,999 +20 10000557 . C . . END=10000567 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:34:99:33:0,99,976 +20 10000568 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:95:37:0,95,1124 +20 10000569 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:84:37:0,84,1150 +20 10000570 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:35:99:35:0,102,1530 +20 10000571 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:37:81:37:0,81,1049 +20 10000572 . A . . END=10000581 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,102,1081 +20 10000582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:35:77:35:0,77,1096 +20 10000583 . T . . END=10000585 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,102,1530 ./.:36:99:35:0,105,988 +20 10000586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1503 ./.:36:99:35:0,105,988 +20 10000587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:34:52:34:0,52,911 +20 10000588 . C . . END=10000589 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:36:0,105,1575 +20 10000590 . G . . END=10000591 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:80:35:0,80,1092 +20 10000592 . C . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:90:36:0,90,1084 +20 10000593 . C . . END=10000595 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:35:0,105,1124 +20 10000596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:37:92:37:0,92,1120 +20 10000597 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:36:0,108,1110 +20 10000598 . T A, . . DP=80;ExcessHet=3.01;RAW_MQandDP=261228,80 GT:AD:DP:GQ:PL:SB ./.:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 ./.:0,31,0:31:93:992,93,0,992,93,992:0,0,14,17 +20 10000599 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:37:94:37:0,94,1126 +20 10000600 . A . . END=10000606 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:37:0,99,1171 +20 10000607 . A . . END=10000611 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:40:93:40:0,93,1395 +20 10000612 . A . . END=10000614 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:40:99:39:0,99,1485 +20 10000615 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:73:38:0,73,1138 +20 10000616 . A . . END=10000617 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:37:99:37:0,102,1530 +20 10000618 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:35:77:35:0,77,1043 +20 10000619 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:35:84:35:0,84,1092 +20 10000620 . A . . END=10000654 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:41:99:36:0,102,1145 +20 10000655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:94:38:0,94,1172 +20 10000656 . A . . END=10000658 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:36:0,105,1575 +20 10000659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:36:92:36:0,92,1094 +20 10000660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:38:0,100,1170 +20 10000661 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:93:38:0,93,1162 +20 10000662 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:38:0,108,1620 +20 10000663 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:86:38:0,86,1113 +20 10000664 . T . . END=10000693 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:42:99:37:0,99,1125 +20 10000694 . G A, . . BaseQRankSum=3.60;DP=119;ExcessHet=3.01;MQRankSum=-5.114e+00;RAW_MQandDP=194196,82;ReadPosRankSum=0.657 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,37,0:82:99:.:1037,0,1601,1173,1712,2885:25,20,18,19 ./.:.:42:99:37:0,99,1125,99,1125,1125 +20 10000695 . G . . END=10000757 GT:DP:GQ:MIN_DP:PL ./.:89:99:79:0,120,1800 ./.:42:99:37:0,99,1125 +20 10000758 . T A, . . DP=143;ExcessHet=3.01;RAW_MQandDP=443381,143 GT:AD:DP:GQ:PL:SB ./.:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 ./.:0,47,0:47:99:1415,140,0,1415,140,1415:0,0,26,21 +20 10000759 . A . . END=10000788 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:47:99:45:0,120,1800 +20 10000789 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:47:96:47:0,96,1315 +20 10000790 . A . . END=10000906 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:46:99:37:0,99,1115 +20 10000907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:94:37:0,94,1107 +20 10000908 . T . . END=10000912 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:37:0,105,1575 +20 10000913 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:79:37:0,79,1082 +20 10000914 . A . . END=10000927 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:35:0,99,1191 +20 10000928 . A . . END=10000936 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:34:0,90,1350 +20 10000937 . A . . END=10000942 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:84:30:0,84,1260 +20 10000943 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:79:32:0,79,912 +20 10000944 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10000945 . C . . END=10000948 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:84:33:0,84,980 +20 10000949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:78:32:0,78,905 +20 10000950 . C . . END=10000952 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:87:32:0,87,1305 +20 10000953 . T . . END=10000954 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:35:0,90,1350 +20 10000955 . A . . END=10000956 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:86:33:0,86,998 +20 10000957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10000958 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:70:33:0,70,970 +20 10000959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:88:33:0,88,1012 +20 10000960 . T . . END=10000963 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:31:0,93,949 +20 10000964 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,951 +20 10000965 . A . . END=10000967 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10000968 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,1006 +20 10000969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10000970 . C . . END=10000973 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:87:31:0,87,1305 +20 10000974 . T . . END=10000995 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10000996 . A . . END=10000999 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:31:0,84,1260 +20 10001000 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:65:32:0,65,872 +20 10001001 . G . . END=10001012 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:31:0,90,901 +20 10001013 . C . . END=10001014 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:83:33:0,83,933 +20 10001015 . A . . END=10001018 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:33:0,90,1350 +20 10001019 . T G, . . BaseQRankSum=-2.541e+00;DP=97;ExcessHet=3.01;MQRankSum=-7.498e+00;RAW_MQandDP=159195,65;ReadPosRankSum=-9.250e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,26,0:65:99:.:679,0,1426,796,1504,2300:17,22,14,12 ./.:.:32:81:32:0,81,1215,81,1215,1215 +20 10001020 . C . . END=10001023 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:81:32:0,81,1215 +20 10001024 . C . . END=10001028 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:72:30:0,72,885 +20 10001029 . T . . END=10001032 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:29:0,81,883 +20 10001033 . C . . END=10001036 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:30:0,90,962 +20 10001037 . A . . END=10001051 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:29:0,81,1215 +20 10001052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:75:29:0,75,911 +20 10001053 . A . . END=10001058 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:29:0,81,1215 +20 10001059 . C . . END=10001065 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001066 . T . . END=10001085 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:29:0,81,893 +20 10001086 . T . . END=10001089 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:78:31:0,78,1170 +20 10001090 . G . . END=10001097 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:30:0,81,1215 +20 10001098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:77:30:0,77,898 +20 10001100 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:90:30:0,90,964 +20 10001101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:87:29:0,87,908 +20 10001102 . A . . END=10001118 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,933 +20 10001119 . A . . END=10001129 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:33:82:31:0,82,949 +20 10001130 . T . . END=10001131 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:82:31:0,82,941 +20 10001133 . T . . END=10001144 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:90:31:0,90,963 +20 10001145 . G . . END=10001148 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:33:81:32:0,81,1215 +20 10001149 . A . . END=10001154 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:78:30:0,78,1170 +20 10001155 . G . . END=10001159 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:28:0,81,965 +20 10001160 . T . . END=10001169 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:90:30:0,90,957 +20 10001170 . T . . END=10001176 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:30:0,81,1215 +20 10001177 . A . . END=10001182 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:78:28:0,78,1170 +20 10001183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:29:0,81,1215 +20 10001184 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:75:29:0,75,859 +20 10001185 . A . . END=10001192 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:81:28:0,81,1215 +20 10001193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:60:29:0,60,916 +20 10001194 . A . . END=10001199 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:30:0,81,1215 +20 10001200 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:71:31:0,71,959 +20 10001201 . T . . END=10001212 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:27:0,81,851 +20 10001213 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:78:26:0,78,799 +20 10001214 . A . . END=10001215 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:81:27:0,81,859 +20 10001216 . T . . END=10001219 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:78:27:0,78,1170 +20 10001220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,845 +20 10001221 . T . . END=10001225 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:75:26:0,75,1125 +20 10001226 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,1035 +20 10001227 . A . . END=10001228 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:75:27:0,75,1125 +20 10001229 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:30:0,81,1215 +20 10001230 . T . . END=10001246 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:70:27:0,70,807 +20 10001247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:65:28:0,65,827 +20 10001248 . A . . END=10001251 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:75:25:0,75,758 +20 10001252 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,1035 +20 10001253 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:46:26:0,46,774 +20 10001254 . T . . END=10001255 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:72:26:0,72,1080 +20 10001256 . A . . END=10001268 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:63:24:0,63,945 +20 10001269 . A . . END=10001270 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:72:26:0,72,1080 +20 10001271 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:25:69:25:0,69,1035 +20 10001272 . T . . END=10001274 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:72:26:0,72,1080 +20 10001275 . A . . END=10001277 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:84:30:0,84,1260 +20 10001278 . A . . END=10001281 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:78:27:0,78,1170 +20 10001282 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:29:0,81,1215 +20 10001283 . T . . END=10001287 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:73:28:0,73,790 +20 10001288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:58:29:0,58,802 +20 10001289 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:81:28:0,81,1215 +20 10001290 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:55:26:0,55,756 +20 10001291 . T . . END=10001294 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:84:29:0,84,1260 +20 10001295 . G . . END=10001297 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:30:0,90,873 +20 10001298 . T A, . . DP=105;ExcessHet=3.01;RAW_MQandDP=330093,105 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 ./.:0,30,0:30:90:918,90,0,918,90,918:0,0,16,14 +20 10001299 . C . . END=10001300 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:32:90:30:0,90,826 +20 10001301 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:89:35:0,89,999 +20 10001302 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:96:35:0,96,1440 +20 10001303 . A . . END=10001305 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:36:99:35:0,99,1485 +20 10001306 . T . . END=10001307 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:36:96:36:0,96,1440 +20 10001308 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:85:35:0,85,997 +20 10001309 . T . . END=10001313 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:33:96:33:0,96,1440 +20 10001314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:33:83:33:0,83,933 +20 10001315 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:91:34:0,91,1009 +20 10001316 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:81:34:0,81,992 +20 10001317 . A . . END=10001318 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:99:34:0,99,987 +20 10001319 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:34:96:34:0,96,1440 +20 10001320 . A . . END=10001334 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:35:99:34:0,99,998 +20 10001335 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:32:96:32:0,96,969 +20 10001336 . C . . END=10001358 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:37:99:34:0,99,943 +20 10001359 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:36:90:36:0,90,1026 +20 10001360 . T . . END=10001388 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:42:99:36:0,99,993 +20 10001389 . A . . END=10001392 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:43:93:42:0,93,1395 +20 10001393 . T . . END=10001402 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:72:43:0,72,1080 +20 10001403 . A . . END=10001407 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:60:42:0,60,900 +20 10001408 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:43:57:43:0,57,855 +20 10001409 . A . . END=10001410 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:51:44:0,51,765 +20 10001411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:45:44:0,45,675 +20 10001412 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:39:44:0,39,585 +20 10001413 . T . . END=10001415 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:44:36:43:0,36,540 +20 10001416 . A . . END=10001421 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:43:33:39:0,33,495 +20 10001422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:40:27:40:0,27,405 +20 10001423 . T . . END=10001425 GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:41:21:40:0,21,315 +20 10001426 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:49:0,111,1800 ./.:41:18:40:0,18,270 +20 10001427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:5:53:0,5,1899 ./.:41:18:40:0,18,270 +20 10001428 . T . . END=10001429 GT:DP:GQ:MIN_DP:PL ./.:54:99:53:0,120,1800 ./.:41:18:40:0,18,270 +20 10001430 . G . . END=10001431 GT:DP:GQ:MIN_DP:PL ./.:56:0:56:0,0,1743 ./.:41:18:40:0,18,270 +20 10001432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:56:0,120,1800 ./.:42:6:41:0,6,90 +20 10001433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:56:0,0,1779 ./.:42:6:41:0,6,90 +20 10001434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:56:0,120,1800 ./.:42:6:41:0,6,90 +20 10001435 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:0:55:0,0,1790 ./.:42:6:41:0,6,90 +20 10001436 . A AAGGCT, . . DP=94;ExcessHet=3.01;RAW_MQandDP=233155,94 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 ./.:0,36,0:36:99:1620,108,0,1620,108,1620:0,0,19,17 +20 10001437 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:42:0:42:0,0,0 +20 10001438 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:40:96:40:0,96,1440 +20 10001439 . G . . END=10001442 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:41:99:40:0,99,1485 +20 10001443 . C . . END=10001446 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:40:0:37:0,0,885 +20 10001447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:59:36:0,59,1053 +20 10001448 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:34:46:34:0,46,957 +20 10001449 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:35:99:35:0,99,1485 +20 10001450 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:45:36:0,45,1009 +20 10001451 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:99:36:0,102,1530 +20 10001452 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:36:97:36:0,97,1144 +20 10001453 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:37:88:37:0,88,1170 +20 10001454 . T . . END=10001466 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:38:99:36:0,99,1225 +20 10001467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:38:89:38:0,89,1159 +20 10001468 . A . . END=10001473 GT:DP:GQ:MIN_DP:PL ./.:61:99:51:0,120,1800 ./.:40:99:39:0,108,1620 +20 10001474 . C T, . . DP=112;ExcessHet=3.01;RAW_MQandDP=281015,112 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 ./.:0,39,0:39:99:1234,117,0,1234,117,1234:0,0,21,18 +20 10001475 . G . . END=10001482 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:39:99:38:0,111,1665 +20 10001483 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:40:87:40:0,87,1204 +20 10001484 . A . . END=10001499 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:99:40:0,100,1202 +20 10001500 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:44:98:44:0,98,1276 +20 10001501 . A . . END=10001508 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:99:42:0,114,1710 +20 10001509 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:93:42:0,93,1262 +20 10001510 . A . . END=10001529 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:36:99:35:0,99,1133 +20 10001530 . G . . END=10001533 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:35:93:35:0,93,1395 +20 10001534 . T . . END=10001541 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:84:33:0,84,1260 +20 10001542 . T . . END=10001543 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:75:32:0,75,1012 +20 10001544 . G . . END=10001545 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:81:31:0,81,1215 +20 10001546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:73:33:0,73,971 +20 10001547 . G . . END=10001557 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:84:29:0,84,1260 +20 10001558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:29:71:29:0,71,903 +20 10001559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:30:87:30:0,87,1305 +20 10001560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:93:32:0,93,1395 +20 10001561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:83:32:0,83,990 +20 10001562 . A . . END=10001563 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001564 . T . . END=10001573 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:82:30:0,82,943 +20 10001574 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:76:31:0,76,950 +20 10001575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:61:31:0,61,877 +20 10001576 . T . . END=10001577 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:83:31:0,83,989 +20 10001578 . A . . END=10001582 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:90:32:0,90,1350 +20 10001583 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:87:32:0,87,1305 +20 10001584 . G . . END=10001589 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:32:0,90,975 +20 10001590 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:80:33:0,80,966 +20 10001591 . T . . END=10001594 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:33:0,90,1350 +20 10001595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:82:34:0,82,1005 +20 10001596 . A . . END=10001598 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:32:0,90,1034 +20 10001599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:69:33:0,69,946 +20 10001600 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:87:32:0,87,1305 +20 10001601 . G . . END=10001609 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:90:33:0,90,1350 +20 10001610 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:87:34:0,87,1305 +20 10001611 . G . . END=10001616 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:35:90:33:0,90,1044 +20 10001617 . C A, . . BaseQRankSum=1.26;DP=136;ExcessHet=3.01;MQRankSum=1.37;RAW_MQandDP=358589,103;ReadPosRankSum=-2.800e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:52,51,0:103:99:.:1760,0,1781,1916,1935,3851:23,29,33,18 ./.:.:35:90:33:0,90,1044,90,1044,1044 +20 10001618 . T . . END=10001621 GT:DP:GQ:MIN_DP:PL ./.:100:99:94:0,120,1800 ./.:35:90:33:0,90,1044 +20 10001622 . T . . END=10001627 GT:DP:GQ:MIN_DP:PL ./.:100:99:94:0,120,1800 ./.:37:99:36:0,99,1485 +20 10001628 . G A, . . DP=133;ExcessHet=3.01;RAW_MQandDP=469348,133 GT:AD:DP:GQ:PL:SB ./.:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 ./.:0,37,0:37:99:1119,110,0,1119,110,1119:0,0,21,16 +20 10001629 . G . . END=10001638 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:99:35:0,99,1075 +20 10001639 . G . . END=10001641 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001642 . G . . END=10001649 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:36:99:35:0,99,1485 +20 10001650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:36:95:36:0,95,1015 +20 10001651 . T . . END=10001654 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:99:36:0,105,1575 +20 10001655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:89:37:0,89,1109 +20 10001656 . A . . END=10001660 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:37:99:37:0,100,1121 +20 10001661 . T C, . . DP=117;ExcessHet=3.01;RAW_MQandDP=405174,117 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 ./.:0,35,0:35:99:0|1:10001661_T_C:1553,105,0,1553,105,1553:0,0,14,21 +20 10001662 . T . . END=10001669 GT:DP:GQ:MIN_DP:PL ./.:82:99:81:0,120,1800 ./.:37:99:36:0,108,1088 +20 10001670 . T G, . . DP=118;ExcessHet=3.01;RAW_MQandDP=400497,118 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 ./.:0,36,0:36:99:0|1:10001661_T_C:1583,108,0,1583,108,1583:0,0,15,21 +20 10001671 . G . . END=10001708 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:41:99:38:0,103,1175 +20 10001709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:43:96:43:0,96,1289 +20 10001710 . C . . END=10001828 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:43:99:38:0,101,1174 +20 10001829 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:39:68:39:0,68,1136 +20 10001830 . C . . END=10001850 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:39:99:35:0,99,1485 +20 10001851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:96:35:0,96,1440 +20 10001852 . G . . END=10001883 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:37:99:34:0,99,1152 +20 10001884 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:97:38:0,97,1146 +20 10001885 . C . . END=10001900 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:99:35:0,99,1147 +20 10001901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:92:35:0,92,1086 +20 10001902 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:99:33:0,99,1008 +20 10001903 . C . . END=10001904 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001905 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:85:34:0,85,993 +20 10001906 . A . . END=10001907 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:91:35:0,91,1080 +20 10001908 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:86:34:0,86,993 +20 10001909 . A . . END=10001911 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:93:35:0,93,1395 +20 10001912 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:36:81:36:0,81,1043 +20 10001913 . A . . END=10001915 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:90:34:0,90,1350 +20 10001916 . G . . END=10001924 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:81:33:0,81,1215 +20 10001925 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:65:33:0,65,933 +20 10001926 . A . . END=10001928 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:78:31:0,78,1170 +20 10001929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:68:31:0,68,820 +20 10001930 . A . . END=10001931 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:74:30:0,74,825 +20 10001932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:84:31:0,84,1260 +20 10001933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:70:32:0,70,939 +20 10001934 . A . . END=10001936 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:30:0,90,937 +20 10001937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:62:30:0,62,889 +20 10001938 . G . . END=10001939 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:30:0,90,894 +20 10001940 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:82:31:0,82,910 +20 10001941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:93:32:0,93,1395 +20 10001942 . T . . END=10001943 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:84:32:0,84,957 +20 10001944 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:99:34:0,99,1485 +20 10001945 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:86:34:0,86,992 +20 10001946 . A . . END=10001947 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001948 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:88:33:0,88,994 +20 10001949 . A . . END=10001950 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001951 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:83:34:0,83,996 +20 10001952 . G . . END=10001956 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:90:33:0,90,1350 +20 10001957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:87:33:0,87,990 +20 10001958 . A . . END=10001959 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:90:32:0,90,1350 +20 10001960 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:77:32:0,77,960 +20 10001961 . G . . END=10001962 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001963 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:77:31:0,77,887 +20 10001964 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001965 . T . . END=10001981 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:81:29:0,81,908 +20 10001982 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:90:30:0,90,903 +20 10001983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:29:87:29:0,87,898 +20 10001984 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:90:30:0,90,938 +20 10001985 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:72:30:0,72,930 +20 10001986 . G . . END=10002008 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:81:28:0,81,876 +20 10002009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:78:32:0,78,951 +20 10002010 . T . . END=10002012 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:81:31:0,81,1215 +20 10002013 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:63:32:0,63,980 +20 10002014 . T . . END=10002016 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:87:30:0,87,1305 +20 10002017 . T . . END=10002018 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:32:0,90,1350 +20 10002019 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:85:32:0,85,990 +20 10002020 . T . . END=10002021 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:32:0,90,1350 +20 10002022 . A . . END=10002023 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:87:31:0,87,1305 +20 10002024 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:78:30:0,78,897 +20 10002025 . A . . END=10002027 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:84:30:0,84,1260 +20 10002028 . A . . END=10002030 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:90:32:0,90,1085 +20 10002031 . C . . END=10002042 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:99:33:0,99,1025 +20 10002043 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:96:32:0,96,1008 +20 10002044 . T . . END=10002048 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:36:99:35:0,102,1124 +20 10002049 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:37:92:37:0,92,1117 +20 10002050 . C . . END=10002057 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:99:36:0,108,1162 +20 10002058 . T G, . . BaseQRankSum=1.93;DP=111;ExcessHet=3.01;MQRankSum=3.07;RAW_MQandDP=379806,111;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL:SB ./.:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 ./.:0,36,0:36:99:1177,108,0,1177,108,1177:0,0,24,12 +20 10002059 . A . . END=10002062 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:38:0,111,1665 +20 10002063 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:96:38:0,96,1185 +20 10002064 . A . . END=10002068 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:38:0,103,1173 +20 10002069 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:37:98:37:0,98,1126 +20 10002070 . A . . END=10002072 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10002073 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:37:96:37:0,96,1127 +20 10002074 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10002075 . T . . END=10002077 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:96:37:0,96,1440 +20 10002078 . A . . END=10002080 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:38:99:36:0,99,1485 +20 10002081 . C . . END=10002085 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:36:96:33:0,96,1440 +20 10002086 . G . . END=10002098 GT:DP:GQ:MIN_DP:PL ./.:77:99:65:0,120,1800 ./.:36:99:35:0,99,1485 +20 10002099 . C T, . . BaseQRankSum=-2.820e-01;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=335529,101;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL:SB ./.:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 ./.:22,14,0:36:99:310,0,563,376,605,982:14,8,10,4 +20 10002100 . T . . END=10002102 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002103 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:32:96:32:0,96,1012 +20 10002104 . T . . END=10002116 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:35:99:33:0,99,1007 +20 10002117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:37:98:37:0,98,1084 +20 10002118 . A . . END=10002129 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:39:99:36:0,101,1104 +20 10002130 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:38:97:38:0,97,1110 +20 10002131 . G . . END=10002137 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:37:99:37:0,100,1125 +20 10002138 . C G, . . DP=90;ExcessHet=3.01;RAW_MQandDP=301663,90 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 ./.:0,37,0:37:99:0|1:10002138_C_G:1642,111,0,1642,111,1642:0,0,27,10 +20 10002139 . A . . END=10002141 GT:DP:GQ:MIN_DP:PL ./.:54:99:52:0,120,1800 ./.:38:99:38:0,102,1530 +20 10002142 . G C, . . DP=89;ExcessHet=3.01;RAW_MQandDP=298063,89 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 ./.:0,37,0:37:99:0|1:10002138_C_G:1673,114,0,1673,114,1673:0,0,27,10 +20 10002143 . T . . END=10002165 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:99:37:0,102,1530 +20 10002166 . G T, . . BaseQRankSum=-1.674e+00;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.777 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:48:99:42:0,105,1575,105,1575,1575 ./.:38,1,0:39:99:.:0,107,1136,114,1138,1145:25,13,1,0 +20 10002167 . G . . END=10002169 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:99:38:0,102,1530 +20 10002170 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:37:96:37:0,96,1086 +20 10002171 . G . . END=10002192 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:99:36:0,102,1146 +20 10002193 . C . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:98:39:0,98,1112 +20 10002194 . C . . END=10002197 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:99:37:0,99,1485 +20 10002198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:95:38:0,95,1127 +20 10002199 . A . . END=10002200 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:37:99:37:0,99,1076 +20 10002201 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:36:97:36:0,97,1078 +20 10002202 . G . . END=10002203 GT:DP:GQ:MIN_DP:PL ./.:49:96:47:0,96,1440 ./.:36:99:33:0,99,972 +20 10002204 . G . . END=10002212 GT:DP:GQ:MIN_DP:PL ./.:46:99:45:0,99,1485 ./.:36:99:33:0,99,972 +20 10002213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:65:45:0,65,1504 ./.:36:99:33:0,99,972 +20 10002214 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:37:94:37:0,94,1129 +20 10002215 . A . . END=10002220 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:38:99:37:0,108,1620 +20 10002221 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:93:39:0,93,1181 +20 10002222 . A . . END=10002237 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:99:38:0,101,1148 +20 10002238 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:89:39:0,89,1167 +20 10002239 . C . . END=10002404 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:99:37:0,102,1122 +20 10002405 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:92:42:0,92,1151 +20 10002406 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:99:44:0,120,1800 +20 10002407 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:82:44:0,82,1208 +20 10002408 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:91:42:0,91,1188 +20 10002409 . G . . END=10002414 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:43:99:42:0,115,1316 +20 10002415 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:55:40:0,55,1048 +20 10002416 . T . . END=10002418 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,100,1291 +20 10002419 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:72:41:0,72,1077 +20 10002420 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,108,1620 +20 10002421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:79:41:0,79,1122 +20 10002422 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:99:39:0,105,1575 +20 10002423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:93:41:0,93,1245 +20 10002424 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:38:82:38:0,82,1041 +20 10002425 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,105,1575 +20 10002426 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:67:39:0,67,1027 +20 10002427 . T . . END=10002429 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:99:40:0,99,1485 +20 10002430 . C . . END=10002433 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:90:39:0,90,1350 +20 10002434 . C . . END=10002439 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:81:36:0,81,1215 +20 10002440 . C . . END=10002442 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:36:72:36:0,72,1080 +20 10002443 . T . . END=10002445 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:60:35:0,60,900 +20 10002446 . T . . END=10002448 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:51:34:0,51,765 +20 10002449 . T . . END=10002450 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:34:48:32:0,48,720 +20 10002451 . T . . END=10002453 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:42:33:0,42,630 +20 10002454 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:36:17:36:0,17,856 +20 10002455 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:93:50:0,93,1395 ./.:36:0:36:0,0,797 +20 10002456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:78:52:0,78,1170 ./.:37:30:37:0,30,954 +20 10002457 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:0:52:0,0,1572 ./.:36:0:36:0,0,530 +20 10002458 . G GT,GTTT,GTTTTT,GTT, . . DP=73;ExcessHet=3.01;RAW_MQandDP=221015,73 GT:AD:DP:GQ:PL:SB ./.:0,6,6,4,0,0:16:9:2172,654,493,249,0,82,353,33,9,214,876,512,168,254,730,876,512,168,254,730,730:0,0,12,4 ./.:0,0,4,0,8,0:12:78:1157,781,698,207,204,120,781,698,204,698,165,162,0,162,78,781,698,204,698,162,698:0,0,7,5 +20 10002459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:58:78:58:0,78,1170 ./.:38:0:38:0,0,73 +20 10002460 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:87:60:0,87,1305 ./.:38:66:38:0,66,990 +20 10002461 . T . . END=10002467 GT:DP:GQ:MIN_DP:PL ./.:62:90:60:0,90,1350 ./.:38:66:38:0,66,990 +20 10002468 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:64:0,99,1485 ./.:38:66:38:0,66,990 +20 10002469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:81:62:0,81,1215 ./.:38:66:38:0,66,990 +20 10002470 . C T, . . DP=91;ExcessHet=3.01;RAW_MQandDP=252226,91 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 ./.:0,30,0:30:93:1256,93,0,1256,93,1256:0,0,17,13 +20 10002471 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:84:63:0,84,1260 ./.:40:72:39:0,72,1080 +20 10002472 . T . . END=10002473 GT:DP:GQ:MIN_DP:PL ./.:63:90:63:0,90,1350 ./.:40:72:39:0,72,1080 +20 10002474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:90:63:0,90,1350 ./.:35:69:33:0,69,1035 +20 10002475 . T . . END=10002477 GT:DP:GQ:MIN_DP:PL ./.:70:99:66:0,102,1530 ./.:35:69:33:0,69,1035 +20 10002478 . A . . END=10002479 GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:30:0:29:0,0,534 +20 10002480 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:29:52:29:0,52,758 +20 10002481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:29:70:28:0,70,796 +20 10002482 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:3:46:0,3,1461 ./.:29:70:28:0,70,796 +20 10002483 . A . . . GT:DP:GQ:MIN_DP:PL ./.:45:99:45:0,108,1620 ./.:27:69:27:0,69,724 +20 10002484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:91:42:0,91,1538 ./.:29:78:28:0,78,1170 +20 10002485 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:29:78:28:0,78,1170 +20 10002486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:66:28:0,66,783 +20 10002487 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:27:72:27:0,72,1080 +20 10002488 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:27:44:27:0,44,693 +20 10002489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:64:28:0,64,780 +20 10002490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:56:28:0,56,822 +20 10002491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:72:28:0,72,1080 +20 10002492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:55:28:0,55,706 +20 10002493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:79:36:0,79,1251 ./.:26:25:26:0,25,644 +20 10002494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:28:37:28:0,37,762 +20 10002495 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:28:50:28:0,50,810 +20 10002496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:38:25:0,38,648 +20 10002497 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:63:27:0,63,945 +20 10002498 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:43:27:0,43,723 +20 10002499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:47:27:0,47,796 +20 10002500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:26:63:26:0,63,945 +20 10002501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:26:34:26:0,34,727 +20 10002502 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:24:56:24:0,56,702 +20 10002503 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:26:25:0,26,625 +20 10002504 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:41:25:0,41,702 +20 10002505 . A . . END=10002506 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:23:66:22:0,66,643 +20 10002507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:22:50:22:0,50,625 +20 10002508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:20:59:20:0,59,596 +20 10002509 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:92:39:0,92,1455 ./.:22:66:22:0,66,672 +20 10002510 . G . . END=10002511 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,105,1575 ./.:22:66:22:0,66,672 +20 10002512 . T . . END=10002513 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,105,1575 ./.:24:71:24:0,71,631 +20 10002514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:38:72:38:0,72,1207 ./.:24:66:22:0,66,642 +20 10002515 . T . . END=10002517 GT:DP:GQ:MIN_DP:PL ./.:39:99:38:0,105,1575 ./.:24:66:22:0,66,642 +20 10002518 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:85:37:0,85,1338 ./.:24:66:22:0,66,642 +20 10002519 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:23:53:23:0,53,685 +20 10002520 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:69:24:0,69,1035 +20 10002521 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:72:24:0,72,738 +20 10002522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:58:25:0,58,728 +20 10002523 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:26:56:26:0,56,766 +20 10002524 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:42:25:0,42,688 +20 10002525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:50:24:0,50,650 +20 10002526 . C . . END=10002528 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:74:25:0,74,739 +20 10002529 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:26:60:26:0,60,742 +20 10002530 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:81:27:0,81,830 +20 10002531 . A . . END=10002533 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:75:27:0,75,1125 +20 10002534 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:55:25:0,55,703 +20 10002535 . C . . END=10002541 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:75:25:0,75,753 +20 10002542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:27:75:25:0,75,753 +20 10002543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:25:56:25:0,56,640 +20 10002544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:25:72:24:0,72,742 +20 10002545 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:84:37:0,84,1362 ./.:25:72:24:0,72,742 +20 10002546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:23:69:23:0,69,708 +20 10002547 . T . . END=10002548 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:25:0,72,1080 +20 10002549 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:57:25:0,57,754 +20 10002550 . G . . END=10002551 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:25:0,72,1080 +20 10002552 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:37:25:0,37,679 +20 10002553 . T . . END=10002554 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:24:0,72,753 +20 10002555 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:87:34:0,87,1207 ./.:23:58:23:0,58,663 +20 10002556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:24:54:24:0,54,704 +20 10002557 . A . . END=10002560 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:26:72:24:0,72,688 +20 10002561 . G . . END=10002562 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:28:81:27:0,81,792 +20 10002563 . G . . END=10002564 GT:DP:GQ:MIN_DP:PL ./.:35:84:34:0,84,1260 ./.:27:78:27:0,78,1170 +20 10002565 . G . . END=10002566 GT:DP:GQ:MIN_DP:PL ./.:34:72:33:0,72,1080 ./.:27:78:27:0,78,1170 +20 10002567 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:72:33:0,72,1080 ./.:30:84:30:0,84,1260 +20 10002568 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:30:68:30:0,68,866 +20 10002569 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:26:77:26:0,77,738 +20 10002570 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:30:84:30:0,84,1260 +20 10002571 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:26:78:26:0,78,753 +20 10002572 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:28:84:28:0,84,735 +20 10002573 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:78:35:0,78,1170 ./.:26:60:26:0,60,650 +20 10002574 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:81:37:0,81,1215 ./.:25:56:25:0,56,648 +20 10002575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:81:37:0,81,1215 ./.:26:62:26:0,62,727 +20 10002576 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:30:87:30:0,87,1305 +20 10002577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:31:90:31:0,90,1350 +20 10002578 . G . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:29:87:29:0,87,871 +20 10002579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:31:90:30:0,90,874 +20 10002580 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:31:90:30:0,90,874 +20 10002581 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:33:73:33:0,73,985 +20 10002582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:33:98:33:0,98,929 +20 10002583 . A . . END=10002586 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10002587 . T . . END=10002601 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:35:90:33:0,90,994 +20 10002602 . T . . END=10002606 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:37:99:37:0,102,1530 +20 10002607 . C . . END=10002616 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:37:90:35:0,90,1055 +20 10002617 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:39:99:39:0,99,1485 +20 10002618 . A . . END=10002624 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:35:93:33:0,93,1395 +20 10002625 . G T, . . DP=96;ExcessHet=3.01;RAW_MQandDP=338379,96 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 ./.:0,32,0:32:96:1029,96,0,1029,96,1029:0,0,17,15 +20 10002626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:85:34:0,85,985 +20 10002627 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002628 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:83:34:0,83,1002 +20 10002629 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:81:34:0,81,1049 +20 10002631 . A . . END=10002633 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:96:33:0,96,1440 +20 10002634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:89:35:0,89,1035 +20 10002635 . A . . END=10002644 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:33:0,99,988 +20 10002645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:92:36:0,92,1109 +20 10002646 . T . . END=10002647 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:99:35:0,102,1530 +20 10002648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:92:35:0,92,1122 +20 10002649 . A . . END=10002663 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:36:0,102,1023 +20 10002664 . G . . END=10002665 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:86:38:0,86,1119 +20 10002666 . G . . END=10002667 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,104,1150 +20 10002668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:81:39:0,81,1136 +20 10002669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,105,1190 +20 10002670 . C . . END=10002671 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:86:40:0,86,1170 +20 10002672 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,100,1142 +20 10002673 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:66:39:0,66,1168 +20 10002674 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,111,1665 +20 10002675 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:75:39:0,75,1092 +20 10002676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,106,1175 +20 10002677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:87:40:0,87,1196 +20 10002678 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:94:40:0,94,1184 +20 10002679 . T . . END=10002681 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,111,1665 +20 10002682 . A . . END=10002683 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:89:39:0,89,1189 +20 10002684 . C . . END=10002685 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:37:0,108,1620 +20 10002686 . C . . END=10002687 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:80:37:0,80,1093 +20 10002688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:38:0,108,1620 +20 10002689 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:85:39:0,85,1171 +20 10002690 . A . . END=10002691 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:99:39:0,108,1271 +20 10002692 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:74:41:0,74,1119 +20 10002693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:99:40:0,111,1665 +20 10002694 . A . . END=10002695 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:92:41:0,92,1125 +20 10002696 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:87:39:0,87,1160 +20 10002697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:96:40:0,96,1440 +20 10002698 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:85:41:0,85,1227 +20 10002699 . C . . END=10002700 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:43:99:42:0,102,1530 +20 10002701 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:43:88:43:0,88,1263 +20 10002702 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:90:44:0,90,1358 +20 10002703 . A . . END=10002716 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:99:43:0,100,1347 +20 10002717 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:42:81:42:0,81,1158 +20 10002718 . A . . END=10002906 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:99:38:0,100,1183 +20 10002907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:92:40:0,92,1196 +20 10002908 . C . . END=10002923 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:36:0,102,1530 +20 10002924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:85:37:0,85,1118 +20 10002925 . A . . END=10002933 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:99:34:0,99,1485 +20 10002934 . C . . END=10002935 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10002936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002937 . A . . END=10002939 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002940 . C . . END=10002944 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002945 . C . . END=10002955 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:90:34:0,90,1350 +20 10002956 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:80:35:0,80,1102 +20 10002957 . G . . END=10002958 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10002959 . T . . END=10002962 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:87:31:0,87,1305 +20 10002963 . A . . END=10002967 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10002968 . T . . END=10002980 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:99:36:0,99,1196 +20 10002981 . G . . END=10002982 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:90:35:0,90,1350 +20 10002983 . T . . END=10002984 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:87:35:0,87,1305 +20 10002985 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:90:37:0,90,1350 +20 10002986 . G . . END=10002992 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:81:32:0,81,1215 +20 10002993 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:75:31:0,75,971 +20 10002994 . T . . END=10002998 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:32:84:31:0,84,1260 +20 10002999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:62:31:0,62,908 +20 10003000 . A . . END=10003003 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:81:30:0,81,1215 +20 10003004 . C . . END=10003009 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:72:28:0,72,1080 +20 10003010 . G . . END=10003012 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:66:27:0,66,990 +20 10003013 . A . . END=10003015 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:72:28:0,72,1080 +20 10003016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:50:28:0,50,809 +20 10003017 . C . . END=10003019 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:27:75:27:0,75,1125 +20 10003020 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:81:28:0,81,1215 +20 10003021 . C T, . . DP=87;ExcessHet=3.01;RAW_MQandDP=305979,87 GT:AD:DP:GQ:PL:SB ./.:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 ./.:0,26,0:26:78:828,78,0,828,78,828:0,0,14,12 +20 10003022 . G . . END=10003024 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:28:84:28:0,84,853 +20 10003025 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:28:66:28:0,66,805 +20 10003026 . T . . END=10003030 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:29:87:29:0,87,889 +20 10003031 . T . . END=10003034 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:30:90:30:0,90,921 +20 10003035 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:29:70:29:0,70,845 +20 10003036 . T . . END=10003050 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:33:0,99,970 +20 10003051 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:88:35:0,88,981 +20 10003052 . C . . END=10003055 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:35:0,105,1040 +20 10003056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:85:36:0,85,1083 +20 10003057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:92:36:0,92,1068 +20 10003058 . A . . END=10003063 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:99:35:0,99,1485 +20 10003064 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:79:36:0,79,1030 +20 10003065 . G . . END=10003071 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:91:35:0,91,1087 +20 10003072 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:34:70:34:0,70,1013 +20 10003073 . A . . END=10003076 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:34:0,99,1485 +20 10003077 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:34:79:34:0,79,1002 +20 10003078 . G . . END=10003083 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:93:31:0,93,958 +20 10003084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:73:32:0,73,928 +20 10003085 . G . . END=10003087 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:90:32:0,90,1350 +20 10003088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:80:32:0,80,965 +20 10003089 . G . . END=10003099 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:31:90:30:0,90,948 +20 10003100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:88:33:0,88,986 +20 10003101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:99:33:0,99,1002 +20 10003102 . T . . END=10003107 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:90:32:0,90,1350 +20 10003108 . C . . END=10003110 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:81:33:0,81,1215 +20 10003111 . C . . END=10003113 GT:DP:GQ:MIN_DP:PL ./.:39:93:39:0,93,1395 ./.:36:81:33:0,81,1215 +20 10003114 . C . . END=10003115 GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:36:81:33:0,81,1215 +20 10003116 . A . . . GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:34:78:34:0,78,1170 +20 10003117 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:35:84:35:0,84,1260 +20 10003118 . C . . END=10003119 GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:32:75:28:0,75,878 +20 10003120 . G . . END=10003121 GT:DP:GQ:MIN_DP:PL ./.:46:99:46:0,114,1710 ./.:32:75:28:0,75,878 +20 10003122 . C . . . GT:DP:GQ:MIN_DP:PL ./.:47:37:47:0,37,1427 ./.:32:75:28:0,75,878 +20 10003123 . A . . END=10003128 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:75:28:0,75,878 +20 10003129 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:26:53:26:0,53,735 +20 10003130 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:75:28:0,75,1125 +20 10003131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:56:30:0,56,804 +20 10003133 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003134 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10003135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:26:53:26:0,53,727 +20 10003136 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:49:28:0,49,776 +20 10003137 . A . . END=10003142 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:78:27:0,78,1170 +20 10003143 . A . . END=10003145 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:84:28:0,84,848 +20 10003146 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:90:30:0,90,906 +20 10003147 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:87:29:0,87,876 +20 10003148 . T . . END=10003149 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:93:32:0,93,987 +20 10003150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:81:32:0,81,953 +20 10003151 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10003152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:83:33:0,83,978 +20 10003153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:87:35:0,87,1041 +20 10003155 . T . . END=10003158 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:33:0,99,998 +20 10003159 . G . . END=10003160 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:87:34:0,87,1009 +20 10003161 . C . . END=10003175 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10003176 . A . . END=10003186 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:81:33:0,81,1215 +20 10003187 . C . . END=10003190 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:93:33:0,93,1395 +20 10003191 . T . . END=10003195 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:99:33:0,99,1006 +20 10003196 . G . . END=10003199 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:93:32:0,93,1395 +20 10003200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:86:33:0,86,931 +20 10003201 . C . . END=10003204 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:93:33:0,93,1395 +20 10003205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:83:34:0,83,1006 +20 10003206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003207 . C . . END=10003210 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:96:32:0,96,912 +20 10003211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:76:34:0,76,989 +20 10003213 . A . . END=10003214 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003215 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:94:35:0,94,1058 +20 10003216 . T . . END=10003217 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:35:0,102,1530 +20 10003218 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:94:35:0,94,1042 +20 10003219 . A . . END=10003230 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:33:0,99,1001 +20 10003231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:58:33:0,58,921 +20 10003232 . T . . END=10003254 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:38:99:35:0,105,1100 +20 10003255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:38:95:38:0,95,1140 +20 10003256 . C . . END=10003267 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:37:99:36:0,99,1485 +20 10003268 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:85:35:0,85,1071 +20 10003269 . A . . END=10003276 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:34:0,99,1094 +20 10003277 . T . . END=10003281 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:93:33:0,93,1052 +20 10003282 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003283 . A . . END=10003286 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:90:34:0,90,1350 +20 10003287 . A . . END=10003292 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:81:30:0,81,1215 +20 10003293 . C . . END=10003297 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:72:29:0,72,1080 +20 10003298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:54:29:0,54,841 +20 10003299 . T . . END=10003305 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:72:27:0,72,1080 +20 10003306 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003307 . A . . END=10003309 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:75:29:0,75,1125 +20 10003310 . A . . END=10003316 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10003317 . T . . END=10003321 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:90:31:0,90,1001 +20 10003322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:85:32:0,85,942 +20 10003323 . C . . END=10003327 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003328 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:78:32:0,78,950 +20 10003329 . T . . END=10003341 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10003342 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:76:29:0,76,907 +20 10003343 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:64:29:0,64,824 +20 10003344 . C . . END=10003347 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:87:29:0,87,914 +20 10003348 . T . . END=10003350 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:90:30:0,90,953 +20 10003351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:73:31:0,73,876 +20 10003352 . C . . END=10003354 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003355 . A . . END=10003357 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10003358 . A C, . . BaseQRankSum=4.000e-03;DP=119;ExcessHet=3.01;MQRankSum=1.01;RAW_MQandDP=318169,89;ReadPosRankSum=-1.355e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,44,0:89:99:.:1483,0,1477,1618,1609,3227:31,14,29,15 ./.:.:31:87:30:0,87,1305,87,1305,1305 +20 10003359 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:30:0,87,1305 +20 10003360 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003361 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:85:32:0,85,976 +20 10003362 . G . . END=10003364 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,954 +20 10003365 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:82:31:0,82,933 +20 10003366 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003367 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:74:31:0,74,892 +20 10003368 . A . . END=10003369 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003370 . A . . END=10003376 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:30:0,90,945 +20 10003377 . A . . END=10003378 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:73:30:0,73,881 +20 10003380 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:87:30:0,87,1305 +20 10003381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:79:30:0,79,942 +20 10003382 . T . . END=10003389 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:80:30:0,80,908 +20 10003390 . G . . END=10003391 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:90:32:0,90,1350 +20 10003392 . C . . END=10003394 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:64:31:0,64,898 +20 10003396 . A . . END=10003401 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:82:29:0,82,909 +20 10003402 . C . . END=10003407 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,947 +20 10003408 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:82:33:0,82,948 +20 10003409 . A . . END=10003418 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:30:0,90,928 +20 10003419 . G . . END=10003420 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:87:30:0,87,882 +20 10003421 . C . . END=10003423 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003424 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:81:31:0,81,951 +20 10003425 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:69:29:0,69,867 +20 10003426 . A . . END=10003435 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:28:0,81,1215 +20 10003436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:60:29:0,60,869 +20 10003437 . C . . END=10003442 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:72:27:0,72,889 +20 10003443 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:67:30:0,67,906 +20 10003444 . C . . END=10003445 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:72:29:0,72,1080 +20 10003446 . G T, . . BaseQRankSum=-8.520e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=104400,29;ReadPosRankSum=-1.061e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:50:0,120,1800,120,1800,1800 ./.:16,11,0:27:99:.:235,0,418,283,451,735:7,9,4,7 +20 10003447 . C . . END=10003449 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:72:28:0,72,1080 +20 10003450 . C . . END=10003457 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:26:62:24:0,62,733 +20 10003458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:57:25:0,57,720 +20 10003459 . C . . END=10003482 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:23:60:21:0,60,596 +20 10003483 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:72:25:0,72,1080 +20 10003484 . C . . END=10003491 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:24:63:23:0,63,709 +20 10003492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:24:55:24:0,55,710 +20 10003493 . T . . END=10003497 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:64:24:0,64,720 +20 10003498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:72:25:0,72,1080 +20 10003499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:69:25:0,69,1035 +20 10003500 . C . . END=10003507 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:27:75:26:0,75,822 +20 10003508 . G . . END=10003525 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:28:0,81,871 +20 10003526 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:65:29:0,65,827 +20 10003527 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:70:29:0,70,821 +20 10003528 . T . . END=10003538 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:29:0,81,1215 +20 10003539 . C . . END=10003540 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:31:0,90,1350 +20 10003541 . T . . END=10003542 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003543 . C . . END=10003547 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:87:33:0,87,1305 +20 10003549 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:90:34:0,90,1350 +20 10003550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:71:33:0,71,951 +20 10003551 . T . . END=10003552 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:68:32:0,68,937 +20 10003554 . A . . END=10003563 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:84:31:0,84,878 +20 10003564 . C . . END=10003566 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,902 +20 10003567 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:75:31:0,75,904 +20 10003568 . C . . END=10003570 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003571 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:76:33:0,76,977 +20 10003572 . T . . END=10003574 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:96:32:0,96,995 +20 10003575 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:85:32:0,85,945 +20 10003576 . C . . END=10003578 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:96:32:0,96,975 +20 10003579 . A . . END=10003584 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:99:33:0,99,1023 +20 10003585 . C . . END=10003586 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:96:33:0,96,1440 +20 10003587 . A . . END=10003588 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003589 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10003590 . T . . END=10003602 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:35:0,99,1485 +20 10003603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:85:35:0,85,989 +20 10003604 . T . . END=10003619 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:35:0,99,1027 +20 10003620 . A . . END=10003621 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:96:35:0,96,1440 +20 10003622 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:87:35:0,87,984 +20 10003623 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:93:35:0,93,1395 +20 10003624 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:81:35:0,81,994 +20 10003625 . C . . END=10003629 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:93:36:0,93,1017 +20 10003630 . A . . END=10003632 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:80:34:0,80,980 +20 10003634 . C . . END=10003635 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003636 . A . . END=10003639 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:96:34:0,96,1440 +20 10003640 . A . . END=10003641 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:84:34:0,84,1260 +20 10003642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:90:36:0,90,1350 +20 10003643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:88:35:0,88,1003 +20 10003644 . C . . END=10003649 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:90:36:0,90,1350 +20 10003650 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003651 . T C, . . DP=123;ExcessHet=3.01;RAW_MQandDP=433876,123 GT:AD:DP:GQ:PL:SB ./.:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 ./.:0,30,0:30:90:931,90,0,931,90,931:0,0,17,13 +20 10003652 . C . . END=10003660 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:84:29:0,84,850 +20 10003661 . T . . END=10003665 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:31:90:30:0,90,930 +20 10003666 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003667 . T . . END=10003668 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003669 . A . . END=10003672 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:87:32:0,87,994 +20 10003673 . T . . END=10003676 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:90:31:0,90,1350 +20 10003677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:62:32:0,62,904 +20 10003678 . C . . END=10003684 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:30:82:30:0,82,956 +20 10003685 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003686 . C . . END=10003687 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:87:33:0,87,1305 +20 10003688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003689 . T . . END=10003691 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:84:33:0,84,936 +20 10003692 . A G, . . DP=98;ExcessHet=3.01;RAW_MQandDP=348338,98 GT:AD:DP:GQ:PL:SB ./.:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 ./.:0,30,0:30:90:909,90,0,909,90,909:0,0,17,13 +20 10003693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:83:34:0,83,1029 +20 10003694 . T . . END=10003696 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:90:31:0,90,1350 +20 10003697 . T . . END=10003698 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:32:87:32:0,87,1305 +20 10003699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:32:90:32:0,90,1350 +20 10003700 . A . . END=10003701 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:30:87:29:0,87,959 +20 10003702 . T . . END=10003704 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:90:33:0,90,1350 +20 10003705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:87:33:0,87,1305 +20 10003706 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:69:34:0,69,1030 +20 10003707 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:85:34:0,85,1037 +20 10003708 . A . . END=10003730 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:90:31:0,90,1350 +20 10003731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:99:34:0,99,1485 +20 10003732 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:96:33:0,96,1440 +20 10003733 . T . . END=10003831 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:44:99:34:0,99,1201 +20 10003832 . G A, . . DP=107;ExcessHet=3.01;RAW_MQandDP=363036,107 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 ./.:0,41,0:41:99:1271,123,0,1271,123,1271:0,0,19,22 +20 10003833 . T . . END=10003911 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:47:99:41:0,111,1411 +20 10003912 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:96:43:0,96,1254 +20 10003913 . A . . END=10003945 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:38:0,104,1194 +20 10003946 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:97:40:0,97,1211 +20 10003947 . A . . END=10003955 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:39:0,106,1253 +20 10003956 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:91:40:0,91,1153 +20 10003957 . T . . END=10003971 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:99:39:0,104,1184 +20 10003972 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:91:43:0,91,1237 +20 10003973 . G . . END=10003984 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:41:0,104,1220 +20 10003985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:97:43:0,97,1279 +20 10003986 . A . . END=10003987 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:42:0,108,1620 +20 10003988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:93:41:0,93,1169 +20 10003989 . A . . END=10004004 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:99:39:0,102,1189 +20 10004005 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:38:98:38:0,98,1093 +20 10004006 . A . . END=10004023 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:38:0,100,1199 +20 10004024 . C . . END=10004026 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:38:93:37:0,93,1395 +20 10004027 . T . . END=10004028 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:39:0,99,1485 +20 10004029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:96:40:0,96,1440 +20 10004030 . T . . END=10004038 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:39:99:37:0,102,1530 +20 10004039 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:36:90:36:0,90,1115 +20 10004040 . G . . END=10004093 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:35:0,102,976 +20 10004094 . A C, . . DP=100;ExcessHet=3.01;RAW_MQandDP=316692,100 GT:AD:DP:GQ:PL:SB ./.:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 ./.:0,47,0:47:99:1455,140,0,1455,140,1455:0,0,25,22 +20 10004095 . C . . END=10004145 GT:DP:GQ:MIN_DP:PL ./.:51:99:45:0,109,1596 ./.:46:99:40:0,101,1112 +20 10004146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:45:0,109,1596 ./.:42:98:42:0,98,1111 +20 10004147 . A G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=283262,87 GT:AD:DP:GQ:PL:SB ./.:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 ./.:0,35,0:35:99:975,103,0,975,103,975:0,0,16,19 +20 10004148 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:91:42:0,91,1201 +20 10004149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:77:42:0,77,1076 +20 10004150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:83:41:0,83,1062 +20 10004151 . G . . END=10004155 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:99:37:0,111,1003 +20 10004156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:43:71:43:0,71,1172 +20 10004157 . G . . END=10004159 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:43:99:42:0,109,1236 +20 10004160 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:76:41:0,76,1083 +20 10004161 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:99:42:0,120,1800 +20 10004162 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:83:42:0,83,1169 +20 10004163 . A . . END=10004164 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:40:99:38:0,114,1141 +20 10004165 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:38:82:38:0,82,1079 +20 10004166 . G . . END=10004169 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:99:40:0,120,1237 +20 10004170 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:39:98:39:0,98,1053 +20 10004171 . G . . END=10004172 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:99:40:0,114,1710 +20 10004173 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:84:42:0,84,1144 +20 10004174 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:99:42:0,114,1710 +20 10004175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:42:96:42:0,96,1189 +20 10004176 . C . . END=10004188 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:41:99:36:0,108,1052 +20 10004189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:39:78:39:0,78,1063 +20 10004190 . C . . END=10004192 GT:DP:GQ:MIN_DP:PL ./.:49:99:45:0,106,1637 ./.:40:99:36:0,102,1152 +20 10004193 . G T, . . BaseQRankSum=-5.040e-01;DP=88;ExcessHet=3.01;MQRankSum=3.42;RAW_MQandDP=182869,52;ReadPosRankSum=1.51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:23,29,0:52:99:.:947,0,775,1016,860,1876:12,11,12,17 ./.:.:40:99:36:0,102,1152,102,1152,1152 +20 10004194 . C . . END=10004195 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:40:99:36:0,102,1152 +20 10004196 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:36:84:36:0,84,985 +20 10004197 . G . . END=10004199 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:96:37:0,96,1440 +20 10004200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:39:84:39:0,84,977 +20 10004201 . G . . END=10004202 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:39:93:38:0,93,1395 +20 10004203 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:64:37:0,64,935 +20 10004204 . A . . END=10004206 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:90:38:0,90,1350 +20 10004207 . G . . END=10004209 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:81:35:0,81,1215 +20 10004210 . A . . END=10004211 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:72:37:0,72,1080 +20 10004212 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:66:37:0,66,990 +20 10004213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:57:38:0,57,855 +20 10004214 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:54:38:0,54,810 +20 10004215 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:57:38:0,57,855 +20 10004216 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:38:54:38:0,54,810 +20 10004217 . G . . END=10004218 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:37:51:36:0,51,765 +20 10004219 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:34:48:34:0,48,720 +20 10004220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:36:45:36:0,45,675 +20 10004221 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,105,1575 ./.:36:51:36:0,51,765 +20 10004222 . C CA, . . BaseQRankSum=0.335;DP=92;ExcessHet=3.01;MQRankSum=-2.042e+00;RAW_MQandDP=194729,54;ReadPosRankSum=1.27 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:31,8,0:39:50:.:50,0,923,153,952,1105:18,13,4,4 ./.:.:38:0:38:0,0,689,0,689,689 +20 10004223 . A AG, . . BaseQRankSum=0.803;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=1.89;RAW_MQandDP=308085,90;ReadPosRankSum=1.09 GT:AD:DP:GQ:PL:SB ./.:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 ./.:13,8,0:21:99:125,0,211,162,235,398:5,8,5,3 +20 10004224 . A G, . . BaseQRankSum=-5.440e-01;ClippingRankSum=0.00;DP=94;ExcessHet=3.01;MQRankSum=0.069;RAW_MQandDP=97316,28;ReadPosRankSum=0.459 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:0:66:0,0,1403,0,1403,1403 ./.:11,10,0:21:99:.:151,0,199,184,228,412:5,6,5,5 +20 10004225 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:40:96:40:0,96,1440 +20 10004226 . A . . END=10004240 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:43:99:41:0,99,1485 +20 10004241 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:0:66:0,0,1965 ./.:42:90:42:0,90,1174 +20 10004242 . A . . END=10004243 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:42:90:42:0,90,1174 +20 10004244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:72:41:0,72,1140 +20 10004245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:42:92:42:0,92,1292 +20 10004246 . A . . END=10004252 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:37:0,99,1485 +20 10004253 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:36:92:36:0,92,1082 +20 10004254 . T . . END=10004258 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:38:0,111,1168 +20 10004259 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:85:40:0,85,1145 +20 10004260 . T . . END=10004271 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:43:99:40:0,115,1234 +20 10004272 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:83:46:0,83,1301 +20 10004273 . T . . END=10004350 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:51:99:44:0,100,1310 +20 10004351 . C G, . . DP=125;ExcessHet=3.01;RAW_MQandDP=441987,125 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 ./.:0,53,0:53:99:1521,157,0,1521,157,1521:0,0,30,23 +20 10004352 . A . . END=10004388 GT:DP:GQ:MIN_DP:PL ./.:65:99:62:0,120,1800 ./.:58:99:53:0,112,1582 +20 10004389 . T G, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=383170,113;ReadPosRankSum=1.41 GT:AD:DP:GQ:PL:SB ./.:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 ./.:1,49,0:50:99:1357,138,0,1360,144,1367:1,0,24,25 +20 10004390 . G . . END=10004434 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:49:99:46:0,107,1370 +20 10004435 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:88:46:0,88,1373 +20 10004436 . T . . END=10004446 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:47:99:46:0,106,1414 +20 10004447 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:93:46:0,93,1356 +20 10004448 . A . . END=10004454 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:44:99:43:0,99,1349 +20 10004455 . A . . END=10004460 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:43:90:41:0,90,1078 +20 10004461 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:99:41:0,105,1575 +20 10004462 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:84:39:0,84,1207 +20 10004463 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:40:0,105,1575 +20 10004464 . G . . END=10004465 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:82:39:0,82,1135 +20 10004466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:39:0,105,1575 +20 10004467 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:77:40:0,77,1187 +20 10004468 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:66:39:0,66,1159 +20 10004469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:85:39:0,85,1184 +20 10004470 . C . . END=10004472 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:99:37:0,99,1485 +20 10004473 . A . . END=10004474 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:96:37:0,96,1440 +20 10004475 . T . . END=10004510 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:34:0,99,1114 +20 10004511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:92:39:0,92,1183 +20 10004512 . T . . END=10004525 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:99:38:0,102,1242 +20 10004526 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:98:39:0,98,1202 +20 10004527 . A . . END=10004534 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:38:0,99,1182 +20 10004535 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:96:38:0,96,1184 +20 10004536 . T . . END=10004554 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:37:0,100,1115 +20 10004555 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:95:37:0,95,1066 +20 10004556 . A . . END=10004560 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:99:37:0,103,1151 +20 10004561 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:81:38:0,81,1117 +20 10004562 . A . . END=10004568 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:93:35:0,93,1395 +20 10004569 . A . . END=10004578 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:36:0,99,1119 +20 10004579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:83:38:0,83,1154 +20 10004580 . T . . END=10004609 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:44:99:38:0,111,1209 +20 10004610 . A C, . . DP=134;ExcessHet=3.01;RAW_MQandDP=468605,134 GT:AD:DP:GQ:PL:SB ./.:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 ./.:0,45,0:45:99:1337,134,0,1337,134,1337:0,0,25,20 +20 10004611 . C . . END=10004691 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:46:99:39:0,100,1230 +20 10004692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:42:93:42:0,93,1281 +20 10004693 . A . . END=10004722 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:46:99:39:0,117,1129 +20 10004723 . T . . END=10004724 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:44:93:42:0,93,1395 +20 10004725 . A G, . . BaseQRankSum=-2.154e+00;DP=107;ExcessHet=3.01;MQRankSum=3.01;RAW_MQandDP=198562,65;ReadPosRankSum=2.09 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,30,0:65:99:.:980,0,1168,1085,1258,2343:10,25,17,13 ./.:.:44:93:42:0,93,1395,93,1395,1395 +20 10004726 . T . . END=10004734 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:44:93:42:0,93,1395 +20 10004735 . C . . END=10004747 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:43:72:39:0,72,1080 +20 10004748 . C . . END=10004755 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:40:81:39:0,81,1215 +20 10004756 . C . . END=10004767 GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:41:72:40:0,72,1080 +20 10004768 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:62:0,120,1800 ./.:40:66:40:0,66,990 +20 10004769 . TAAAACTATGC T, . . BaseQRankSum=1.60;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=353426,117;ReadPosRankSum=1.88 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004770 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004771 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004772 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004773 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004774 . C *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004775 . T *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004776 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004777 . T *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004778 . G *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004779 . C *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004780 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:0:40:0,0,277 +20 10004781 . A . . END=10004782 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:99:40:0,111,1665 +20 10004783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:44:40:0,44,1109 +20 10004784 . C . . END=10004786 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:99:40:0,106,1181 +20 10004787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:66:40:0,66,1173 +20 10004788 . G . . END=10004873 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:49:99:40:0,99,1277 +20 10004874 . A C, . . DP=134;ExcessHet=3.01;RAW_MQandDP=475423,134 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 ./.:0,47,0:47:99:0|1:10004874_A_C:1744,141,0,1744,141,1744:0,0,22,25 +20 10004875 . T . . END=10004886 GT:DP:GQ:MIN_DP:PL ./.:86:99:85:0,120,1800 ./.:51:99:49:0,115,1498 +20 10004887 . A G, . . BaseQRankSum=0.356;ClippingRankSum=0.00;DP=133;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=473282,133;ReadPosRankSum=2.05 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 ./.:27,21,0:48:99:0|1:10004874_A_C:511,0,709,592,771,1363:14,13,11,10 +20 10004888 . A . . END=10005009 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:50:99:44:0,108,1306 +20 10005010 . C T, . . DP=117;ExcessHet=3.01;RAW_MQandDP=418441,117 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 ./.:0,43,0:43:99:1366,129,0,1366,129,1366:0,0,21,22 +20 10005011 . G . . END=10005023 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:50:99:49:0,120,1800 +20 10005024 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:50:87:50:0,87,1434 +20 10005025 . T . . END=10005163 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:53:99:45:0,119,1471 +20 10005164 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:46:96:46:0,96,1285 +20 10005165 . C . . END=10005204 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:46:99:41:0,111,1196 +20 10005205 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:43:95:43:0,95,1227 +20 10005206 . A . . END=10005426 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:54:99:43:0,117,1344 +20 10005427 . C T, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=375241,105;ReadPosRankSum=-7.250e-01 GT:AD:DP:GQ:PL:SB ./.:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 ./.:1,48,0:49:99:1493,136,0,1496,143,1503:1,0,24,24 +20 10005428 . A . . END=10005498 GT:DP:GQ:MIN_DP:PL ./.:71:99:57:0,120,1800 ./.:52:99:47:0,120,1800 +20 10005499 . A G, . . DP=129;ExcessHet=3.01;RAW_MQandDP=464400,129 GT:AD:DP:GQ:PL:SB ./.:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 ./.:0,52,0:52:99:1645,155,0,1645,155,1645:0,0,26,26 +20 10005500 . T . . END=10005586 GT:DP:GQ:MIN_DP:PL ./.:71:99:66:0,120,1800 ./.:49:99:42:0,109,1334 +20 10005587 . A G, . . BaseQRankSum=-8.340e-01;DP=114;ExcessHet=3.01;MQRankSum=-9.720e-01;RAW_MQandDP=256969,72;ReadPosRankSum=0.248 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,36,0:72:99:.:1258,0,1236,1366,1345,2710:19,17,16,20 ./.:.:49:99:42:0,109,1334,109,1334,1334 +20 10005588 . A . . END=10005619 GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:49:99:42:0,109,1334 +20 10005620 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:45:96:45:0,96,1306 +20 10005621 . T . . END=10005722 GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:50:99:41:0,114,1274 +20 10005723 . A G, . . DP=137;ExcessHet=3.01;RAW_MQandDP=490969,137 GT:AD:DP:GQ:PL:SB ./.:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 ./.:0,51,0:51:99:1437,152,0,1437,152,1437:0,0,29,22 +20 10005724 . A . . END=10006063 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:52:99:38:0,99,1164 +20 10006064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:41:80:41:0,80,1121 +20 10006065 . T . . END=10006069 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:43:99:42:0,120,1800 +20 10006070 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:42:94:42:0,94,1159 +20 10006071 . A . . END=10006111 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:40:99:34:0,99,1256 +20 10006112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:78:35:0,78,1060 +20 10006113 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:88:35:0,88,1059 +20 10006114 . A . . END=10006120 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10006121 . T . . END=10006126 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:93:34:0,93,1395 +20 10006127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:86:34:0,86,1038 +20 10006128 . T . . END=10006131 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10006132 . A . . END=10006135 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:35:0,102,1530 +20 10006136 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:90:35:0,90,1030 +20 10006137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10006138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:88:35:0,88,1060 +20 10006139 . C . . END=10006142 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:34:0,99,1485 +20 10006143 . A . . END=10006148 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:93:35:0,93,1395 +20 10006149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:87:35:0,87,1305 +20 10006150 . G . . END=10006158 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:90:33:0,90,1350 +20 10006159 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:83:34:0,83,1005 +20 10006160 . A . . END=10006164 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:33:90:32:0,90,1350 +20 10006165 . C . . END=10006189 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:34:0,99,1038 +20 10006190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:38:96:38:0,96,1141 +20 10006191 . G . . END=10006202 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:38:99:35:0,99,1485 +20 10006203 . A . . END=10006210 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:93:32:0,93,1395 +20 10006211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10006212 . G . . END=10006214 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10006215 . T . . END=10006218 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10006219 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:91:37:0,91,1054 +20 10006220 . G . . END=10006222 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:36:0,102,1530 +20 10006223 . A . . END=10006224 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:96:36:0,96,1440 +20 10006225 . A . . END=10006290 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:52:99:37:0,99,1162 +20 10006291 . G A, . . BaseQRankSum=0.311;DP=121;ExcessHet=3.01;MQRankSum=-1.081e+00;RAW_MQandDP=295179,84;ReadPosRankSum=-1.447e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:53,31,0:84:99:.:1007,0,1905,1167,1998,3165:25,28,16,15 ./.:.:52:99:37:0,99,1162,99,1162,1162 +20 10006292 . A . . END=10006383 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:52:99:37:0,99,1162 +20 10006384 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:43:89:43:0,89,1158 +20 10006385 . A . . END=10006403 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:45:99:40:0,102,1530 +20 10006404 . A C, . . BaseQRankSum=1.72;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=402651,114;ReadPosRankSum=-5.390e-01 GT:AD:DP:GQ:PL:SB ./.:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 ./.:1,36,0:37:99:1061,100,0,1064,107,1071:0,1,15,21 +20 10006405 . C . . END=10006410 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:40:99:38:0,102,1159 +20 10006411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:80:38:0,80,1080 +20 10006412 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:75:38:0,75,1050 +20 10006413 . C . . END=10006428 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:40:99:38:0,110,1191 +20 10006429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:84:38:0,84,1131 +20 10006430 . A . . END=10006446 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:99:37:0,102,1530 +20 10006447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:83:39:0,83,1144 +20 10006448 . A . . END=10006455 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:99:38:0,105,1575 +20 10006456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:98:38:0,98,1165 +20 10006457 . A . . END=10006464 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:38:0,99,1154 +20 10006465 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:98:39:0,98,1163 +20 10006466 . G . . END=10006476 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:36:0,99,1127 +20 10006477 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:37:94:37:0,94,1083 +20 10006478 . A . . END=10006673 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:46:99:37:0,106,1199 +20 10006674 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:42:93:42:0,93,1255 +20 10006675 . C . . END=10006681 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:45:99:44:0,120,1800 +20 10006682 . T A, . . DP=120;ExcessHet=3.01;RAW_MQandDP=426326,120 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 ./.:0,46,0:46:99:1399,137,0,1399,137,1399:0,0,26,20 +20 10006683 . A . . END=10006756 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:44:99:38:0,100,1074 +20 10006757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:39:96:39:0,96,1139 +20 10006758 . A . . END=10006774 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:99:38:0,99,1196 +20 10006775 . T . . END=10006780 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:90:39:0,90,1350 +20 10006781 . C . . END=10006783 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:38:81:37:0,81,1215 +20 10006784 . T . . END=10006789 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:39:72:37:0,72,1080 +20 10006790 . T . . END=10006799 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:60:36:0,60,900 +20 10006800 . A . . END=10006804 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:57:40:0,57,855 +20 10006805 . G . . END=10006806 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:40:54:40:0,54,810 +20 10006807 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:41:48:41:0,48,720 +20 10006808 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:38:45:38:0,45,675 +20 10006809 . C . . END=10006810 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:39:42:0,39,585 +20 10006811 . A . . END=10006814 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:43:42:41:0,42,630 +20 10006815 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:39:42:0,39,585 +20 10006816 . T . . END=10006817 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:30:42:0,30,450 +20 10006818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,120,1800 ./.:42:24:42:0,24,360 +20 10006819 . AAAAC A, . . DP=115;ExcessHet=3.01;RAW_MQandDP=425700,115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006820 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006821 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006822 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006823 . C *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:0:43:0,0,0 +20 10006825 . A . . END=10006826 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:44:93:43:0,93,1395 +20 10006827 . C . . END=10006846 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:41:0,99,1237 +20 10006847 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:77:42:0,77,1173 +20 10006848 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:42:0,120,1800 +20 10006849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:89:41:0,89,1203 +20 10006850 . A . . END=10006888 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:38:0,106,1163 +20 10006889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:95:42:0,95,1261 +20 10006890 . A . . END=10006891 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,107,1197 +20 10006892 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:68:42:0,68,1168 +20 10006893 . A . . END=10006899 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:38:0,114,1189 +20 10006900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:38:97:38:0,97,1147 +20 10006901 . C . . END=10006912 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:38:0,111,1665 +20 10006913 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:79:39:0,79,1123 +20 10006914 . A . . END=10006916 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:99:38:0,102,1134 +20 10006917 . G . . END=10006918 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:38:96:38:0,96,1117 +20 10006919 . A . . END=10006924 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:39:0,105,1189 +20 10006925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:98:42:0,98,1267 +20 10006926 . A . . END=10006928 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:42:0,114,1710 +20 10006929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:96:42:0,96,1257 +20 10006930 . A . . END=10006943 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:41:0,111,1263 +20 10006944 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:91:40:0,91,1121 +20 10006945 . T . . END=10007001 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:44:99:38:0,105,1400 +20 10007002 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:92:39:0,92,1168 +20 10007003 . T . . END=10007038 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:38:0,102,1241 +20 10007039 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:97:43:0,97,1320 +20 10007040 . G . . END=10007042 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:42:0,117,1755 +20 10007043 . G A, . . BaseQRankSum=2.41;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=0.482 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:59:0,120,1800,120,1800,1800 ./.:14,27,0:41:99:.:752,0,298,794,379,1174:7,7,17,10 +20 10007044 . G . . END=10007079 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:38:0,101,1168 +20 10007080 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:98:39:0,98,1144 +20 10007081 . G . . END=10007083 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:99:38:0,105,1575 +20 10007084 . A . . END=10007087 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:96:38:0,96,1440 +20 10007088 . A . . END=10007097 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:37:99:33:0,99,1088 +20 10007098 . A . . END=10007105 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:90:33:0,90,1350 +20 10007106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:35:88:35:0,88,1119 +20 10007107 . G . . END=10007110 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:93:33:0,93,1395 +20 10007111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:99:34:0,99,1485 +20 10007112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:80:33:0,80,1041 +20 10007113 . G . . END=10007114 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:99:33:0,99,1063 +20 10007115 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:32:96:32:0,96,983 +20 10007116 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:99:33:0,99,983 +20 10007117 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:98:33:0,98,1002 +20 10007118 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:82:33:0,82,1028 +20 10007119 . C . . END=10007127 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:36:99:33:0,99,1031 +20 10007128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:94:41:0,94,1227 +20 10007129 . G . . END=10007130 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,120,1800 +20 10007131 . T . . END=10007132 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:95:41:0,95,1219 +20 10007133 . G . . END=10007135 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:40:0,104,1210 +20 10007136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:90:40:0,90,1207 +20 10007137 . A . . END=10007140 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:39:0,102,1206 +20 10007141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:98:41:0,98,1296 +20 10007142 . G . . END=10007146 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,114,1710 +20 10007147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:76:41:0,76,1165 +20 10007148 . C . . END=10007149 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:41:0,114,1710 +20 10007150 . G C, . . BaseQRankSum=-2.939e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=374400,104;ReadPosRankSum=-7.700e-02 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 ./.:29,11,0:40:99:.:.:199,0,798,286,831,1118:19,10,7,4 +20 10007151 . G . . END=10007167 GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:41:99:37:0,102,1530 +20 10007168 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:38:97:38:0,97,1133 +20 10007169 . T . . END=10007174 GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:37:99:36:0,100,1079 +20 10007175 . C T, . . BaseQRankSum=2.25;DP=98;ExcessHet=3.01;MQRankSum=1.32;RAW_MQandDP=216841,61;ReadPosRankSum=-1.213e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:23,38,0:61:99:.:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 ./.:.:37:89:37:.:.:0,89,1076,89,1076,1076 +20 10007176 . T . . END=10007190 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:38:99:36:0,99,1138 +20 10007191 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:39:86:39:0,86,1084 +20 10007192 . A . . END=10007193 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:99:39:0,106,1159 +20 10007194 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:93:37:0,93,1080 +20 10007195 . G . . END=10007233 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:38:99:35:0,99,1001 +20 10007234 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:98:37:0,98,1098 +20 10007235 . C . . END=10007255 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:34:0,99,1028 +20 10007256 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:91:36:0,91,1012 +20 10007257 . C . . END=10007266 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:99:37:0,102,1132 +20 10007267 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:96:40:0,96,1440 +20 10007268 . G . . END=10007275 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:99:39:0,99,1485 +20 10007276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:92:36:0,92,1087 +20 10007277 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:36:0,99,1485 +20 10007278 . T . . END=10007286 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:93:33:0,93,1027 +20 10007287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:99:37:0,99,1485 +20 10007288 . G . . END=10007291 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:93:35:0,93,1395 +20 10007292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:89:35:0,89,1063 +20 10007293 . C . . END=10007305 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:34:90:31:0,90,995 +20 10007306 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:33:87:33:0,87,1041 +20 10007307 . G . . END=10007313 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:33:93:33:0,93,1395 +20 10007314 . A . . END=10007322 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:35:0,99,1485 +20 10007323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:79:36:0,79,1012 +20 10007324 . A . . END=10007334 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:33:0,99,1051 +20 10007335 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:97:36:0,97,1036 +20 10007336 . C . . END=10007337 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:99:34:0,102,1051 +20 10007338 . C . . END=10007341 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:93:34:0,93,1395 +20 10007342 . C . . END=10007350 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:36:0,99,1485 +20 10007351 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:34:85:34:0,85,998 +20 10007352 . C T, . . DP=106;ExcessHet=3.01;RAW_MQandDP=378841,106 GT:AD:DP:GQ:PL:SB ./.:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 ./.:0,37,0:37:99:1150,110,0,1150,110,1150:0,0,10,27 +20 10007353 . A . . END=10007376 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:37:99:37:0,102,1530 +20 10007377 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:36:81:36:0,81,1069 +20 10007378 . T . . END=10007388 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:37:99:36:0,102,1131 +20 10007389 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:38:88:38:0,88,1139 +20 10007390 . A . . END=10007419 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:40:99:37:0,102,1241 +20 10007420 . T C, . . BaseQRankSum=-3.784e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=1.03 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:99:58:0,120,1800,120,1800,1800 ./.:18,19,0:37:99:.:412,0,447,466,504,970:12,6,6,13 +20 10007421 . G . . END=10007456 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:42:99:37:0,103,1174 +20 10007457 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:39:90:39:0,90,1201 +20 10007458 . C . . END=10007465 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:42:99:41:0,106,1195 +20 10007466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:41:98:41:0,98,1248 +20 10007467 . A . . END=10007491 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:45:99:39:0,105,1226 +20 10007492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:45:98:45:0,98,1302 +20 10007493 . A . . END=10007530 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:46:99:43:0,115,1290 +20 10007531 . A G, . . DP=115;ExcessHet=3.01;RAW_MQandDP=411769,115 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 ./.:0,43,0:43:99:1228,127,0,1228,127,1228:0,0,29,14 +20 10007532 . G . . END=10007574 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:41:0,108,1304 +20 10007575 . C T, . . BaseQRankSum=-2.490e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=-8.910e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:65:0,120,1800,120,1800,1800 ./.:17,20,0:37:99:.:500,0,413,551,473,1024:11,6,11,9 +20 10007576 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:91:41:0,91,1178 +20 10007577 . C . . END=10007581 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:44:99:40:0,113,1265 +20 10007582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:43:95:43:0,95,1258 +20 10007583 . C . . END=10007612 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:43:99:39:0,100,1172 +20 10007613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:97:38:0,97,1117 +20 10007614 . A . . END=10007620 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:37:0,99,1485 +20 10007621 . A . . END=10007628 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:90:32:0,90,1350 +20 10007629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:86:36:0,86,1059 +20 10007630 . A . . END=10007631 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:92:36:0,92,1148 +20 10007632 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:80:37:0,80,1113 +20 10007633 . A . . END=10007634 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:34:90:34:0,90,1350 +20 10007635 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:35:89:35:0,89,1036 +20 10007636 . C . . END=10007639 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:35:90:35:0,90,1350 +20 10007640 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:34:87:34:0,87,1305 +20 10007641 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:93:36:0,93,1395 +20 10007642 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10007643 . A . . END=10007644 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:93:37:0,93,1395 +20 10007645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10007646 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:96:37:0,96,1440 +20 10007647 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10007648 . G . . END=10007649 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:96:34:0,96,1440 +20 10007650 . C . . END=10007652 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10007653 . A . . END=10007654 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:93:36:0,93,1395 +20 10007655 . G . . END=10007659 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:99:38:0,99,1485 +20 10007660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:98:39:0,98,1176 +20 10007661 . A . . END=10007691 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:40:99:38:0,100,1184 +20 10007692 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:42:98:42:0,98,1251 +20 10007693 . C . . END=10007834 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:41:0,103,1287 +20 10007835 . T C, . . BaseQRankSum=-4.583e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=0.073 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:65:0,120,1800,120,1800,1800 ./.:15,24,0:39:99:.:539,0,382,584,453,1038:3,12,13,11 +20 10007836 . G . . END=10007863 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:99:38:0,105,1159 +20 10007864 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:93:41:0,93,1177 +20 10007865 . A . . END=10007875 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:99:38:0,105,1165 +20 10007876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:40:89:40:0,89,1205 +20 10007877 . A . . END=10007959 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:40:0,106,1315 +20 10007960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:47:96:47:0,96,1409 +20 10007961 . T . . END=10007979 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:47:99:46:0,117,1413 +20 10007980 . A C, . . DP=133;ExcessHet=3.01;RAW_MQandDP=486600,133 GT:AD:DP:GQ:PL:SB ./.:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 ./.:0,43,0:43:99:1307,128,0,1307,128,1307:0,0,19,24 +20 10007981 . A . . END=10007982 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:99:46:0,105,1575 +20 10007983 . C . . END=10007985 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:45:93:45:0,93,1395 +20 10007986 . A . . END=10007994 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:45:84:44:0,84,1260 +20 10007995 . G . . END=10007998 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:43:72:43:0,72,1080 +20 10007999 . G . . END=10008008 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:43:60:41:0,60,900 +20 10008009 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:57:46:0,57,855 +20 10008010 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:48:46:0,48,720 +20 10008011 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:45:46:0,45,675 +20 10008012 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:42:46:0,42,630 +20 10008013 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:47:45:47:0,45,675 +20 10008014 . C . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:47:42:47:0,42,630 +20 10008015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:39:46:0,39,585 +20 10008016 . A . . END=10008017 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:27:46:0,27,405 +20 10008018 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:45:24:45:0,24,360 +20 10008019 . T . . END=10008020 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:43:21:41:0,21,315 +20 10008021 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:41:18:41:0,18,270 +20 10008022 . A . . END=10008023 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:44:12:44:0,12,180 +20 10008024 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:46:9:46:0,9,135 +20 10008025 . A . . END=10008026 GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:48:12:47:0,12,180 +20 10008027 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:47:15:47:0,15,225 +20 10008028 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:80:0,120,1800 ./.:49:18:49:0,18,270 +20 10008029 . T TA,TAA, . . BaseQRankSum=0.409;DP=130;ExcessHet=3.01;MQRankSum=0.576;RAW_MQandDP=478451,130;ReadPosRankSum=-1.326e+00 GT:AD:DP:GQ:PL:SB ./.:3,72,0,0:75:99:2024,145,0,2033,222,2110,2033,222,2110,2110:1,2,27,45 ./.:0,17,22,0:39:99:1244,629,524,416,0,337,1157,615,414,1113:0,0,17,22 +20 10008030 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:47:0:47:0,0,0 +20 10008031 . A . . END=10008032 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:48:82:47:0,82,1361 +20 10008033 . A . . END=10008038 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:99:47:0,120,1800 +20 10008039 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:26:44:0,26,1086 +20 10008040 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:45:99:45:0,113,1254 +20 10008041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:70:44:0,70,1165 +20 10008042 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:39:98:39:0,98,1105 +20 10008043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:45:99:45:0,120,1800 +20 10008044 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:39:67:39:0,67,1007 +20 10008045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:42:96:42:0,96,1233 +20 10008046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:41:88:41:0,88,1166 +20 10008047 . A . . END=10008101 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:46:99:41:0,103,1214 +20 10008102 . A . . END=10008103 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:45:90:45:0,90,1350 +20 10008104 . A . . END=10008106 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:84:40:0,84,1260 +20 10008107 . A . . END=10008111 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:43:72:41:0,72,1080 +20 10008112 . T . . END=10008116 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:44:60:43:0,60,900 +20 10008117 . C . . END=10008120 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:47:54:46:0,54,810 +20 10008121 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:51:49:0,51,765 +20 10008122 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:48:49:0,48,720 +20 10008123 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:48:45:48:0,45,675 +20 10008124 . T . . END=10008127 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:48:42:47:0,42,630 +20 10008128 . T . . END=10008129 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:39:48:0,39,585 +20 10008130 . T . . END=10008132 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:49:27:44:0,27,405 +20 10008133 . C . . END=10008137 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:50:21:48:0,21,315 +20 10008138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:50:18:50:0,18,270 +20 10008139 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:53:15:53:0,15,225 +20 10008140 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:55:9:55:0,9,135 +20 10008141 . C . . END=10008142 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:55:6:54:0,6,90 +20 10008143 . C . . END=10008145 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:53:0:51:0,0,0 +20 10008146 . TA T, . . DP=121;ExcessHet=3.01;RAW_MQandDP=442100,121 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 ./.:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008147 . A *, . . DP=121 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 ./.:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:55:0:55:0,0,0 +20 10008149 . A . . END=10008180 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:51:99:46:0,120,1800 +20 10008181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:46:88:46:0,88,1297 +20 10008182 . A . . END=10008194 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:44:99:43:0,103,1289 +20 10008195 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:94:43:0,94,1201 +20 10008196 . T . . END=10008197 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:44:99:44:0,102,1530 +20 10008198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:42:98:42:0,98,1236 +20 10008199 . A . . END=10008203 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:41:99:39:0,102,1530 +20 10008204 . A . . END=10008205 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:39:90:38:0,90,1166 +20 10008206 . T . . END=10008208 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:39:99:38:0,105,1198 +20 10008209 . T . . END=10008210 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:39:96:38:0,96,1440 +20 10008211 . A . . END=10008217 GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:99:40:0,99,1240 +20 10008218 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:40:96:40:0,96,1244 +20 10008219 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:86:43:0,86,1222 +20 10008220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:72:0,120,1800 ./.:43:77:43:0,77,1143 +20 10008221 . T C, . . DP=116;ExcessHet=3.01;RAW_MQandDP=420569,116 GT:AD:DP:GQ:PL:SB ./.:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 ./.:0,36,0:36:99:1039,106,0,1039,106,1039:0,0,20,16 +20 10008222 . T . . END=10008245 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:46:99:42:0,105,1268 +20 10008246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:47:91:47:0,91,1314 +20 10008247 . T . . END=10008388 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:57:99:47:0,110,1465 +20 10008389 . A G, . . BaseQRankSum=-3.469e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=205200,57;ReadPosRankSum=0.498 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:99:45:0,108,1620,108,1620,1620 ./.:26,29,0:55:99:.:674,0,697,752,783,1535:17,9,14,15 +20 10008390 . T . . END=10008457 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:59:99:48:0,119,1721 +20 10008458 . T G, . . DP=117;ExcessHet=3.01;RAW_MQandDP=364642,117 GT:AD:DP:GQ:PL:SB ./.:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 ./.:0,46,0:46:99:1398,138,0,1398,138,1398:0,0,24,22 +20 10008459 . A . . END=10008625 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:47:99:41:0,107,1140 +20 10008626 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:48:86:48:0,86,1316 +20 10008627 . A . . END=10008707 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:44:99:41:0,99,1095 +20 10008708 . A . . END=10008709 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:42:96:42:0,96,1440 +20 10008710 . C . . END=10008711 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:41:99:41:0,99,1485 +20 10008712 . A . . END=10008715 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:43:90:41:0,90,1350 +20 10008716 . C . . END=10008725 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:40:84:38:0,84,1260 +20 10008726 . A . . END=10008731 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:39:72:39:0,72,1080 +20 10008732 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:40:60:37:0,60,900 +20 10008733 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:94:47:0,94,1689 ./.:40:60:37:0,60,900 +20 10008734 . G . . END=10008737 GT:DP:GQ:MIN_DP:PL ./.:48:99:47:0,120,1800 ./.:40:60:37:0,60,900 +20 10008738 . C . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:47:0,120,1800 ./.:40:51:40:0,51,765 +20 10008739 . C . . END=10008741 GT:DP:GQ:MIN_DP:PL ./.:48:99:47:0,120,1800 ./.:41:48:38:0,48,720 +20 10008742 . G T, . . BaseQRankSum=3.89;ClippingRankSum=0.00;DP=84;ExcessHet=3.01;MQRankSum=-1.113e+00;RAW_MQandDP=188475,84;ReadPosRankSum=0.221 GT:AD:DP:GQ:PL:SB ./.:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 ./.:13,20,0:33:99:542,0,265,581,325,907:7,6,10,10 +20 10008743 . T . . END=10008744 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:41:42:40:0,42,630 +20 10008745 . T . . END=10008746 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:40:36:40:0,36,540 +20 10008747 . T . . END=10008749 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:39:30:38:0,30,450 +20 10008750 . T . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:40:12:40:0,12,936 +20 10008751 . A . . END=10008753 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:42:21:41:0,21,315 +20 10008754 . A . . END=10008755 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:43:24:42:0,24,360 +20 10008756 . T . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:43:21:43:0,21,315 +20 10008757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,99,1485 ./.:44:18:44:0,18,270 +20 10008758 . C CA,CAA, . . BaseQRankSum=0.130;DP=81;ExcessHet=3.01;MQRankSum=-1.168e+00;RAW_MQandDP=182457,81;ReadPosRankSum=-5.200e-02 GT:AD:DP:GQ:PL:SB ./.:4,31,0,0:35:10:721,10,0,733,102,825,733,102,825,825:3,1,16,15 ./.:0,20,11,0:31:99:804,284,194,434,0,396,767,275,433,745:0,0,14,17 +20 10008759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:53:0,120,1800 ./.:42:0:42:0,0,0 +20 10008760 . A . . END=10008772 GT:DP:GQ:MIN_DP:PL ./.:55:99:53:0,120,1800 ./.:43:99:41:0,102,1530 +20 10008773 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:0:54:0,0,1660 ./.:42:34:42:0,34,1130 +20 10008774 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:55:0,117,1755 ./.:40:99:40:0,105,1575 +20 10008775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:60:55:0,60,1923 ./.:44:35:44:0,35,1209 +20 10008776 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:41:89:41:0,89,1223 +20 10008777 . C . . END=10008805 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:41:99:39:0,107,1204 +20 10008806 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:40:91:40:0,91,1167 +20 10008807 . A . . END=10008859 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:99:36:0,99,1056 +20 10008860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:37:78:37:0,78,1039 +20 10008861 . G . . END=10008887 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:40:99:38:0,102,1132 +20 10008888 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:38:98:38:0,98,1079 +20 10008889 . T . . END=10008890 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:99:38:0,111,1665 +20 10008891 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:98:39:0,98,1121 +20 10008892 . A . . END=10008901 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:39:99:37:0,99,1107 +20 10008902 . A . . END=10008906 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:38:90:37:0,90,1350 +20 10008907 . G . . END=10008910 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:36:81:30:0,81,1215 +20 10008911 . G . . END=10008913 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:36:75:35:0,75,1125 +20 10008914 . A . . END=10008920 GT:DP:GQ:MIN_DP:PL ./.:54:99:45:0,99,1480 ./.:34:63:32:0,63,945 +20 10008921 . C CA, . . BaseQRankSum=0.610;DP=80;ExcessHet=3.01;MQRankSum=-1.906e+00;RAW_MQandDP=155512,49;ReadPosRankSum=0.173 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:18,16,0:34:99:.:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 ./.:.:31:6:31:.:.:0,6,658,6,658,658 +20 10008922 . A . . END=10008930 GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:37:57:33:0,57,855 +20 10008931 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:54:40:0,54,810 +20 10008932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:41:57:41:0,57,855 +20 10008933 . A . . END=10008934 GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:54:38:0,54,810 +20 10008935 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:0:39:0,0,807 +20 10008936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:39:40:0,39,974 +20 10008937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:45:40:0,45,675 +20 10008938 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:40:42:40:0,42,630 +20 10008939 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:35:39:0,35,950 +20 10008940 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:2:39:0,2,898 +20 10008941 . A . . END=10008942 GT:DP:GQ:MIN_DP:PL ./.:53:99:47:0,114,1710 ./.:39:39:38:0,39,585 +20 10008943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:47:78:47:0,78,1170 ./.:38:36:38:0,36,540 +20 10008944 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:78:47:0,78,1170 ./.:38:33:38:0,33,495 +20 10008945 . A . . END=10008946 GT:DP:GQ:MIN_DP:PL ./.:47:81:46:0,81,1215 ./.:38:30:38:0,30,450 +20 10008947 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:81:46:0,81,1215 ./.:38:0:38:0,0,894 +20 10008948 . TA T, . . BaseQRankSum=0.994;DP=85;ExcessHet=3.01;MQRankSum=2.05;RAW_MQandDP=256423,85;ReadPosRankSum=0.884 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 ./.:0,33,0:33:99:.:.:1406,99,0,1406,99,1406:0,0,15,18 +20 10008949 . A *, . . DP=85 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 ./.:0,33,0:33:99:.:.:1406,99,0,1406,99,1406:0,0,15,18 +20 10008950 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:99:52:0,99,1485 ./.:39:0:39:0,0,0 +20 10008951 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:93:51:0,93,1395 ./.:39:0:39:0,0,0 +20 10008952 . CACACACACACACA C,CCA,CCACACACACA,CCACACACACACA,CCACA, . . BaseQRankSum=0.941;DP=95;ExcessHet=3.01;MQRankSum=1.84;RAW_MQandDP=282669,95;ReadPosRankSum=0.716 GT:AD:DP:GQ:PL:SB ./.:1,3,14,5,11,0,0:34:99:1704,876,1258,525,811,845,726,514,173,703,582,342,0,443,530,1135,1092,744,779,607,1321,1135,1092,744,779,607,1321,1321:1,0,25,8 ./.:0,0,0,15,0,12,0:27:99:1315,1243,1282,1243,1282,1282,505,512,512,439,1243,1282,1282,512,1282,648,714,714,0,714,719,1243,1282,1282,512,1282,714,1282:0,0,12,15 +20 10008953 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008954 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008955 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008956 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008957 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008958 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008959 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008960 . C *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008961 . A *, . . DP=95 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008962 . C *, . . DP=98 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:39:82:39:0,82,1154,82,1154,1154 +20 10008963 . A *, . . DP=98 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:39:82:39:0,82,1154,82,1154,1154 +20 10008964 . C *, . . DP=99 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:42:99:40:0,99,1485,99,1485,1485 +20 10008965 . A *, . . DP=99 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:42:99:40:0,99,1485,99,1485,1485 +20 10008966 . C . . END=10008979 GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:42:99:40:0,99,1485 +20 10008980 . C . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:43:95:43:0,95,1276 +20 10008981 . A . . END=10008986 GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:44:99:42:0,99,1342 +20 10008987 . A . . END=10008989 GT:DP:GQ:MIN_DP:PL ./.:59:94:59:0,94,2181 ./.:44:99:42:0,99,1342 +20 10008990 . C . . END=10008992 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:99:42:0,99,1342 +20 10008993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:72:44:0,72,1233 +20 10008994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:61:44:0,61,1238 +20 10008995 . A . . END=10008996 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:97:44:0,97,1262 +20 10008997 . C . . END=10009012 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:45:99:42:0,109,1342 +20 10009013 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:98:44:0,98,1273 +20 10009014 . G . . END=10009060 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:46:99:36:0,99,1287 +20 10009061 . T . . END=10009068 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:90:35:0,90,1055 +20 10009069 . T . . END=10009070 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:34:84:33:0,84,1017 +20 10009071 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:34:99:34:0,99,1485 +20 10009072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:31:78:31:0,78,924 +20 10009073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:32:96:32:0,96,1009 +20 10009074 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:99:35:0,99,1485 +20 10009075 . A . . END=10009076 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:93:35:0,93,1080 +20 10009077 . A . . END=10009091 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:37:99:35:0,99,1159 +20 10009092 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:39:93:39:0,93,1178 +20 10009093 . A . . END=10009094 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:40:99:39:0,114,1710 +20 10009095 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:87:42:0,87,1177 +20 10009096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:95:42:0,95,1256 +20 10009097 . A . . END=10009194 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:99:37:0,99,1123 +20 10009195 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:40:90:40:0,90,1189 +20 10009196 . C . . END=10009226 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:41:99:39:0,108,1142 +20 10009227 . A G, . . BaseQRankSum=-1.130e-01;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=1.43;RAW_MQandDP=350188,103;ReadPosRankSum=-1.119e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:23,39,0:62:99:.:.:1398,0,740,1468,857,2325:16,7,19,20 ./.:16,24,0:40:99:0|1:10009227_A_G:640,0,377,688,449,1137:6,10,13,11 +20 10009228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:59:0,120,1800 ./.:41:95:41:0,95,1151 +20 10009229 . C . . END=10009245 GT:DP:GQ:MIN_DP:PL ./.:62:99:59:0,120,1800 ./.:42:99:39:0,102,1245 +20 10009246 . A G, . . BaseQRankSum=1.56;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=375408,114;ReadPosRankSum=1.72 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,77,0:77:99:.:.:3031,231,0,3031,231,3031:0,0,42,35 ./.:1,35,0:36:99:0|1:10009227_A_G:1312,101,0,1314,108,1321:0,1,19,16 +20 10009247 . A . . END=10009252 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:41:99:40:0,101,1068 +20 10009253 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:40:75:40:0,75,1104 +20 10009254 . A . . END=10009256 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:39:99:39:0,111,1665 +20 10009257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:37:61:37:0,61,955 +20 10009258 . G . . END=10009274 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:42:99:39:0,99,1042 +20 10009275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:42:96:42:0,96,1203 +20 10009276 . T . . END=10009283 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:43:99:42:0,114,1710 +20 10009284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:44:96:44:0,96,1247 +20 10009285 . G . . END=10009399 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:50:99:40:0,99,1183 +20 10009400 . T A, . . DP=132;ExcessHet=3.01;RAW_MQandDP=475200,132 GT:AD:DP:GQ:PL:SB ./.:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 ./.:0,58,0:58:99:1856,174,0,1856,174,1856:0,0,31,27 +20 10009401 . A . . END=10009511 GT:DP:GQ:MIN_DP:PL ./.:78:99:72:0,120,1800 ./.:59:99:55:0,113,1581 +20 10009512 . C G, . . DP=131;ExcessHet=3.01;RAW_MQandDP=457640,131 GT:AD:DP:GQ:PL:SB ./.:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 ./.:0,53,0:53:99:1578,158,0,1578,158,1578:0,0,30,23 +20 10009513 . A . . END=10009525 GT:DP:GQ:MIN_DP:PL ./.:81:99:63:0,120,1800 ./.:55:99:54:0,120,1800 +20 10009526 . T C, . . BaseQRankSum=-1.994e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=-6.450e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:81:99:63:0,120,1800,120,1800,1800 ./.:50,2,0:52:99:.:0,119,1416,148,1422,1451:29,21,1,1 +20 10009527 . T . . END=10009718 GT:DP:GQ:MIN_DP:PL ./.:81:99:63:0,120,1800 ./.:55:99:47:0,120,1800 +20 10009719 . A G, . . BaseQRankSum=-3.827e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=409010,115;ReadPosRankSum=-1.459e+00 GT:AD:DP:GQ:PL:SB ./.:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 ./.:24,32,0:56:99:717,0,596,789,691,1480:8,16,20,12 +20 10009720 . T . . END=10009794 GT:DP:GQ:MIN_DP:PL ./.:54:99:47:0,120,1800 ./.:53:99:43:0,120,1800 +20 10009795 . A G, . . DP=92;ExcessHet=3.01;RAW_MQandDP=328969,92 GT:AD:DP:GQ:PL:SB ./.:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 ./.:0,44,0:44:99:1429,132,0,1429,132,1429:0,0,22,22 +20 10009796 . C . . END=10009813 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:43:99:38:0,105,1575 +20 10009814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:38:96:38:0,96,1440 +20 10009815 . C . . END=10009820 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:38:99:33:0,99,1062 +20 10009821 . C . . END=10009825 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:35:93:34:0,93,1395 +20 10009826 . A . . END=10009827 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:99:37:0,99,1485 +20 10009828 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:87:37:0,87,1305 +20 10009829 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:57:37:0,57,855 +20 10009830 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:38:60:38:0,60,900 +20 10009831 . A . . END=10009832 GT:DP:GQ:MIN_DP:PL ./.:49:99:44:0,99,1485 ./.:37:54:36:0,54,810 +20 10009833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:37:42:37:0,42,630 +20 10009834 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:37:45:37:0,45,675 +20 10009835 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:36:48:36:0,48,720 +20 10009836 . A . . END=10009838 GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:39:51:38:0,51,765 +20 10009839 . A . . END=10009840 GT:DP:GQ:MIN_DP:PL ./.:53:66:51:0,66,990 ./.:37:57:36:0,57,855 +20 10009841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:39:51:0,39,585 ./.:35:54:34:0,54,810 +20 10009842 . G GAA, . . BaseQRankSum=0.872;DP=85;ExcessHet=3.01;MQRankSum=-6.030e-01;RAW_MQandDP=150092,51;ReadPosRankSum=1.72 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:19,15,0:34:99:.:570,0,690,629,738,1367:9,10,8,7 ./.:.:35:54:34:0,54,810,54,810,810 +20 10009843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:36:51:0,36,540 ./.:35:54:34:0,54,810 +20 10009844 . G A, . . BaseQRankSum=1.05;DP=83;ExcessHet=3.01;MQRankSum=0.975;RAW_MQandDP=262368,83;ReadPosRankSum=-1.555e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 ./.:0,31,0:31:93:0|1:10009844_G_A:1294,93,0,1294,93,1294:0,0,17,14 +20 10009845 . A . . END=10009847 GT:DP:GQ:MIN_DP:PL ./.:51:42:51:0,42,630 ./.:34:57:32:0,57,855 +20 10009848 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:51:54:0,51,765 ./.:34:57:32:0,57,855 +20 10009849 . A . . END=10009850 GT:DP:GQ:MIN_DP:PL ./.:55:57:54:0,57,855 ./.:34:60:32:0,60,900 +20 10009851 . A . . END=10009853 GT:DP:GQ:MIN_DP:PL ./.:56:63:56:0,63,945 ./.:34:60:32:0,60,900 +20 10009854 . G . . END=10009856 GT:DP:GQ:MIN_DP:PL ./.:57:72:56:0,72,1080 ./.:34:60:32:0,60,900 +20 10009857 . A . . END=10009860 GT:DP:GQ:MIN_DP:PL ./.:57:72:56:0,72,1080 ./.:36:72:34:0,72,1080 +20 10009861 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:84:56:0,84,1260 ./.:36:72:34:0,72,1080 +20 10009862 . G . . END=10009864 GT:DP:GQ:MIN_DP:PL ./.:58:84:56:0,84,1260 ./.:35:84:34:0,84,1260 +20 10009865 . A . . END=10009868 GT:DP:GQ:MIN_DP:PL ./.:57:90:56:0,90,1350 ./.:35:84:34:0,84,1260 +20 10009869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:90:56:0,90,1350 ./.:38:93:37:0,93,1395 +20 10009870 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:57:0,99,1485 ./.:38:93:37:0,93,1395 +20 10009871 . A G, . . BaseQRankSum=-8.030e-01;DP=98;ExcessHet=3.01;MQRankSum=1.50;RAW_MQandDP=291537,98;ReadPosRankSum=1.54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 ./.:0,37,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665:0,0,15,22 +20 10009872 . G . . END=10009874 GT:DP:GQ:MIN_DP:PL ./.:57:99:55:0,108,1620 ./.:38:96:38:0,96,1440 +20 10009875 . A G,AGGGAGG, . . BaseQRankSum=0.378;DP=95;ExcessHet=3.01;MQRankSum=1.36;RAW_MQandDP=280737,95;ReadPosRankSum=1.04 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:2,15,13,0:30:99:.:.:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 ./.:0,37,0,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665,1665,111,1665,1665:0,0,15,22 +20 10009876 . G . . END=10009878 GT:DP:GQ:MIN_DP:PL ./.:52:99:51:0,114,1710 ./.:36:99:34:0,99,1485 +20 10009879 . A G, . . BaseQRankSum=1.53;DP=85;ExcessHet=3.01;MQRankSum=1.57;RAW_MQandDP=250261,85;ReadPosRankSum=1.11 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:2,47,0:49:99:.:.:2273,150,0,2276,154,2279:2,0,15,32 ./.:0,35,0:35:99:0|1:10009844_G_A:1575,105,0,1575,105,1575:0,0,15,20 +20 10009880 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:48:0,120,1800 ./.:37:99:37:0,102,1530 +20 10009881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:48:0,120,1800 ./.:35:94:35:0,94,1053 +20 10009882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:48:0,120,1800 ./.:35:99:35:0,99,1485 +20 10009883 . A G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=251738,83 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,47,0:47:99:.:.:2180,147,0,2180,147,2181:0,0,15,32 ./.:0,33,0:33:99:0|1:10009844_G_A:1485,99,0,1485,99,1485:0,0,13,20 +20 10009884 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:53:0,120,1800 ./.:35:89:35:0,89,1025 +20 10009885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:96:52:0,96,1815 ./.:35:93:35:0,93,1020 +20 10009886 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:0:53:0,0,1567 ./.:35:99:34:0,101,1001 +20 10009887 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:50:0,109,1906 ./.:35:99:34:0,101,1001 +20 10009888 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:0:51:0,0,1610 ./.:35:99:34:0,101,1001 +20 10009889 . A . . END=10009891 GT:DP:GQ:MIN_DP:PL ./.:49:99:49:0,106,1800 ./.:35:99:34:0,101,1001 +20 10009892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:44:50:0,44,1725 ./.:35:99:34:0,101,1001 +20 10009893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:51:0,115,2005 ./.:35:99:34:0,101,1001 +20 10009894 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:48:53:0,48,1842 ./.:35:99:34:0,101,1001 +20 10009895 . G . . END=10009898 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,101,1001 +20 10009899 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:88:35:0,88,971 +20 10009900 . A . . END=10009901 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,108,1064 +20 10009902 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:81:36:0,81,1007 +20 10009903 . G . . END=10009904 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:99:36:0,105,1575 +20 10009905 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:83:38:0,83,1124 +20 10009906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:33:98:33:0,98,900 +20 10009907 . G . . END=10009956 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:99:39:0,100,1080 +20 10009957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:97:43:0,97,1341 +20 10009958 . A . . END=10010045 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:42:99:38:0,99,1204 +20 10010046 . G . . END=10010049 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:93:35:0,93,1395 +20 10010050 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:79:38:0,79,1062 +20 10010051 . A . . END=10010054 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:90:36:0,90,1350 +20 10010055 . T . . END=10010057 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:87:33:0,87,1027 +20 10010058 . A . . END=10010068 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:33:90:33:0,90,1350 +20 10010069 . A . . END=10010076 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,99,1485 +20 10010077 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:97:36:0,97,1080 +20 10010078 . A . . END=10010085 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,99,1046 +20 10010086 . C . . END=10010094 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:92:34:0,92,1055 +20 10010095 . A . . END=10010100 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:99:37:0,99,1485 +20 10010101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:96:36:0,96,1012 +20 10010102 . T . . END=10010105 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,102,998 +20 10010106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:90:35:0,90,993 +20 10010107 . A . . END=10010108 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,105,1575 +20 10010109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:94:37:0,94,1059 +20 10010110 . T . . END=10010122 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:41:99:38:0,114,1127 +20 10010123 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:45:89:45:0,89,1199 +20 10010124 . A . . END=10010272 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:99:34:0,99,1057 +20 10010273 . A . . END=10010276 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:96:34:0,96,1440 +20 10010277 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,99,1485 +20 10010278 . T . . END=10010287 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:32:0,90,1032 +20 10010288 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:87:35:0,87,1037 +20 10010289 . A . . END=10010293 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:34:0,90,1350 +20 10010294 . T . . END=10010295 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:81:33:0,81,970 +20 10010296 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:96:35:0,96,1440 +20 10010297 . A . . END=10010298 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010299 . A . . END=10010300 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:90:37:0,90,1350 +20 10010301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:87:37:0,87,1305 +20 10010302 . A . . END=10010312 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:39:99:35:0,99,1485 +20 10010313 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:91:36:0,91,1056 +20 10010314 . A . . END=10010315 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,102,1530 +20 10010316 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:32:96:32:0,96,981 +20 10010317 . T . . END=10010319 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,102,1530 +20 10010320 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:94:35:0,94,1105 +20 10010321 . A . . END=10010322 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,102,1530 +20 10010323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:89:35:0,89,1055 +20 10010324 . T . . END=10010329 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:33:0,99,1037 +20 10010330 . T . . END=10010351 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:30:0,90,960 +20 10010352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,99,1485 +20 10010353 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:34:0,90,1058 +20 10010354 . C . . END=10010355 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:99:34:0,99,1095 +20 10010356 . C . . END=10010358 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:93:34:0,93,1395 +20 10010359 . T . . END=10010363 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010364 . A . . END=10010365 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:96:37:0,96,1440 +20 10010366 . A . . END=10010370 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:96:36:0,96,1440 +20 10010372 . T . . END=10010373 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010374 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:94:35:0,94,1090 +20 10010375 . C . . END=10010392 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:40:99:35:0,99,1485 +20 10010393 . T G, . . BaseQRankSum=-1.738e+00;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=419282,118;ReadPosRankSum=-3.900e-01 GT:AD:DP:GQ:PL:SB ./.:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 ./.:18,21,0:39:99:530,0,466,584,530,1113:10,8,12,9 +20 10010394 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:40:99:40:0,114,1710 +20 10010395 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:39:84:39:0,84,1142 +20 10010396 . G . . END=10010494 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:49:99:37:0,102,1157 +20 10010495 . A . . END=10010497 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:90:50:0,90,1350 +20 10010498 . A . . END=10010501 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:81:51:0,81,1215 +20 10010502 . A . . END=10010504 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:72:50:0,72,1080 +20 10010505 . G . . END=10010508 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:63:52:0,63,945 +20 10010509 . T . . END=10010511 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:54:50:0,54,810 +20 10010512 . T . . END=10010513 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:51:51:0,51,765 +20 10010514 . A . . END=10010516 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:48:51:0,48,720 +20 10010517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:54:45:54:0,45,675 +20 10010518 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:54:39:54:0,39,585 +20 10010519 . T . . END=10010522 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:33:52:0,33,495 +20 10010523 . G . . END=10010528 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:24:52:0,24,360 +20 10010529 . T . . END=10010531 GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:21:53:0,21,315 +20 10010532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:54:15:54:0,15,225 +20 10010533 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:51:12:51:0,12,180 +20 10010534 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:52:6:52:0,6,90 +20 10010535 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:67:0,120,1800 ./.:53:9:53:0,9,135 +20 10010536 . G GA, . . DP=140;ExcessHet=3.01;RAW_MQandDP=523500,140 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 ./.:0,49,0:49:99:1509,147,0,1509,147,1509:0,0,20,29 +20 10010537 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:53:0:53:0,0,0 +20 10010538 . A . . END=10010675 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:48:99:38:0,103,1199 +20 10010676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:38:98:38:0,98,1184 +20 10010677 . T . . END=10010689 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:37:99:37:0,99,1485 +20 10010690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:37:95:37:0,95,1080 +20 10010691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:35:80:35:0,80,1017 +20 10010692 . C . . END=10010733 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:41:99:38:0,101,1165 +20 10010734 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:41:87:41:0,87,1218 +20 10010735 . T . . END=10010765 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:43:99:37:0,109,1046 +20 10010766 . T G, . . DP=106;ExcessHet=3.01;RAW_MQandDP=381600,106 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 ./.:0,38,0:38:99:1065,112,0,1065,112,1065:0,0,16,22 +20 10010767 . G . . END=10010820 GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:43:99:38:0,103,1161 +20 10010821 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:44:84:44:0,84,1309 +20 10010822 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:44:99:44:0,115,1281 +20 10010823 . G T, . . DP=101;ExcessHet=3.01;RAW_MQandDP=144000,40 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:61:0,120,1800,120,1800,1800 ./.:40,0,0:40:99:.:0,120,1251,120,1251,1251:17,23,0,0 +20 10010824 . G . . END=10010831 GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:48:99:46:0,120,1800 +20 10010832 . T C, . . DP=118;ExcessHet=3.01;RAW_MQandDP=420338,118 GT:AD:DP:GQ:PL:SB ./.:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 ./.:0,43,0:43:99:1323,128,0,1323,128,1323:0,0,19,24 +20 10010833 . A . . END=10011028 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:44:99:37:0,99,1185 +20 10011029 . C . . END=10011031 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:96:38:0,96,1113 +20 10011032 . A . . END=10011035 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:40:99:39:0,99,1485 +20 10011036 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:39:52:39:0,52,1072 +20 10011037 . A . . END=10011039 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:95:37:0,95,1126 +20 10011040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:79:36:0,79,1040 +20 10011041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:80:37:0,80,1044 +20 10011042 . A . . END=10011043 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:94:37:0,94,1107 +20 10011044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:86:37:0,86,1108 +20 10011045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:99:37:0,99,1136 +20 10011046 . G . . END=10011047 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:76:35:0,76,1052 +20 10011048 . G . . END=10011051 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:33:99:33:0,99,1015 +20 10011052 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:34:90:34:0,90,1018 +20 10011053 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:99:35:0,105,1128 +20 10011054 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:93:35:0,93,1057 +20 10011055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:99:35:0,104,1031 +20 10011056 . C . . END=10011057 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:93:35:0,93,971 +20 10011058 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:99:38:0,108,1620 +20 10011059 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:94:37:0,94,1021 +20 10011060 . T . . END=10011064 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:99:37:0,99,1120 +20 10011065 . C . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:98:38:0,98,1065 +20 10011066 . A . . END=10011074 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:99:34:0,99,932 +20 10011075 . C T, . . BaseQRankSum=5.36;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=298800,83;ReadPosRankSum=-1.036e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:44,39,0:83:99:.:1354,0,1333,1485,1450,2935:22,22,22,17 ./.:.:36:99:34:0,99,932,99,932,932 +20 10011076 . G . . END=10011077 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:34:0,99,932 +20 10011078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:91:36:0,91,1085 +20 10011079 . A . . END=10011083 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:99:34:0,99,1485 +20 10011084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:89:35:0,89,1065 +20 10011085 . T . . END=10011087 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:35:0,99,1056 +20 10011088 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:92:36:0,92,1053 +20 10011089 . A . . END=10011093 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:37:0,105,1575 +20 10011094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:94:36:0,94,1075 +20 10011095 . A . . END=10011096 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:37:0,105,1575 +20 10011097 . C . . END=10011098 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:96:36:0,96,962 +20 10011099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:39:99:39:0,102,1530 +20 10011100 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:97:37:0,97,1039 +20 10011101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:38:99:38:0,102,1530 +20 10011102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:84:37:0,84,1084 +20 10011103 . C . . END=10011111 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:38:99:36:0,99,1181 +20 10011112 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10011113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:87:35:0,87,1008 +20 10011114 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10011115 . C . . END=10011140 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:34:0,99,1095 +20 10011141 . T . . END=10011145 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:93:37:0,93,1108 +20 10011146 . A . . END=10011149 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:35:0,99,1485 +20 10011150 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:96:36:0,96,1096 +20 10011151 . T . . END=10011152 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10011153 . A . . END=10011156 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10011157 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:88:35:0,88,1071 +20 10011158 . C . . END=10011165 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:93:33:0,93,1395 +20 10011166 . C . . END=10011171 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:99:34:0,99,1485 +20 10011172 . T . . END=10011177 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:91:34:0,91,1065 +20 10011178 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10011179 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:83:37:0,83,1087 +20 10011180 . T . . END=10011227 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:40:99:36:0,101,1135 +20 10011228 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:40:89:40:0,89,1177 +20 10011229 . T . . END=10011280 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:46:99:41:0,111,1329 +20 10011281 . G A, . . BaseQRankSum=-2.303e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=172800,48;ReadPosRankSum=0.763 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:52:0,120,1800,120,1800,1800 ./.:46,2,0:48:99:.:0,124,1411,138,1416,1430:29,17,1,1 +20 10011282 . A . . END=10011308 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:51:99:47:0,120,1800 +20 10011309 . T C, . . DP=129;ExcessHet=3.01;RAW_MQandDP=464400,129 GT:AD:DP:GQ:PL:SB ./.:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 ./.:0,52,0:52:99:1458,154,0,1458,154,1458:0,0,33,19 +20 10011310 . G . . END=10011335 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:49:99:44:0,120,1800 +20 10011336 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:81:46:0,81,1313 +20 10011337 . A . . END=10011413 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:99:39:0,105,1136 +20 10011414 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:42:98:42:0,98,1172 +20 10011415 . G . . END=10011445 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:99:41:0,103,1220 +20 10011446 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:43:97:43:0,97,1261 +20 10011447 . A . . END=10011472 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:99:43:0,105,1305 +20 10011473 . T . . END=10011475 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:93:43:0,93,1395 +20 10011476 . A . . END=10011482 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:81:44:0,81,1215 +20 10011483 . A . . END=10011486 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:48:72:48:0,72,1080 +20 10011487 . T . . END=10011492 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:48:63:48:0,63,945 +20 10011493 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:57:47:0,57,855 +20 10011494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:54:47:0,54,810 +20 10011495 . T . . END=10011504 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:51:44:0,51,765 +20 10011505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:48:45:0,48,720 +20 10011506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:39:45:0,39,585 +20 10011507 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:33:44:0,33,495 +20 10011508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:30:44:0,30,450 +20 10011509 . C . . END=10011510 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:24:44:0,24,360 +20 10011511 . T . . END=10011513 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:12:46:0,12,180 +20 10011514 . A . . END=10011516 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:9:46:0,9,135 +20 10011517 . GAA G,GA,GAAA, . . BaseQRankSum=0.690;ClippingRankSum=0.00;DP=135;ExcessHet=3.01;MQRankSum=1.80;RAW_MQandDP=486210,135;ReadPosRankSum=0.315 GT:AD:DP:GQ:PL:SB ./.:37,2,28,6,0:73:99:528,611,2120,0,1042,875,604,1499,722,1648,667,1700,966,1470,1638:23,14,19,17 ./.:1,0,37,0,0:38:88:942,945,968,88,111,0,945,968,111,968,945,968,111,968,968:1,0,20,17 +20 10011518 . A *, . . DP=135 GT:AD:DP:GQ:PL:SB ./.:37,28,0:73:99:528,0,875,667,966,1638:23,14,19,17 ./.:1,37,0:38:88:942,88,0,945,111,968:1,0,20,17 +20 10011519 . A *, . . DP=139 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,28,0:73:99:.:528,0,875,667,966,1638:23,14,19,17 ./.:.:48:0:48:0,0,0,0,0,0 +20 10011520 . A . . END=10011556 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:48:99:44:0,100,1332 +20 10011557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:45:94:45:0,94,1206 +20 10011558 . A . . END=10011591 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:47:99:42:0,100,1260 +20 10011592 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:40:87:40:0,87,1145 +20 10011593 . A . . END=10011597 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:40:99:38:0,108,1227 +20 10011598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:41:67:41:0,67,1108 +20 10011599 . C . . END=10011638 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:43:99:39:0,105,1215 +20 10011639 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:42:93:42:0,93,1265 +20 10011640 . A . . END=10011661 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:44:99:39:0,101,1198 +20 10011662 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:37:78:37:0,78,1108 +20 10011663 . G . . END=10011665 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:37:99:37:0,108,1144 +20 10011666 . C T, . . DP=108;ExcessHet=3.01;RAW_MQandDP=380523,108 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 ./.:0,35,0:35:99:1140,105,0,1140,105,1140:0,0,16,19 +20 10011667 . A . . END=10011678 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:39:99:38:0,99,1168 +20 10011679 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:94:38:0,94,1136 +20 10011680 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:39:89:39:0,89,1116 +20 10011681 . T . . END=10011687 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:99:37:0,99,1485 +20 10011688 . T . . END=10011690 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:96:38:0,96,1440 +20 10011691 . A . . END=10011938 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:45:99:37:0,99,1169 +20 10011939 . C T, . . DP=103;ExcessHet=3.01;RAW_MQandDP=344243,103 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 ./.:0,42,0:42:99:1304,126,0,1304,126,1304:0,0,22,20 +20 10011940 . G . . END=10011981 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:54:99:50:0,99,1399 +20 10011982 . G . . END=10011988 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:56:90:55:0,90,1350 +20 10011989 . G . . END=10011994 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:81:54:0,81,1215 +20 10011995 . T . . END=10011996 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:58:75:58:0,75,1125 +20 10011997 . A . . END=10012004 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:59:60:57:0,60,900 +20 10012005 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:59:54:59:0,54,810 +20 10012006 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:60:48:60:0,48,720 +20 10012007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:59:42:59:0,42,630 +20 10012008 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:60:39:60:0,39,585 +20 10012009 . G . . END=10012010 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:30:55:0,30,450 +20 10012011 . T . . END=10012013 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:27:57:0,27,405 +20 10012014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:58:21:58:0,21,315 +20 10012015 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:18:57:0,18,270 +20 10012016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:6:57:0,6,90 +20 10012017 . A . . END=10012018 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:57:3:56:0,3,45 +20 10012019 . G . . END=10012020 GT:DP:GQ:MIN_DP:PL ./.:56:99:42:0,101,1575 ./.:55:0:53:0,0,0 +20 10012021 . CA C, . . DP=119;ExcessHet=3.01;RAW_MQandDP=404476,119 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 ./.:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012022 . A *, . . DP=119 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 ./.:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012023 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:38:0,99,1485 ./.:54:0:54:0,0,0 +20 10012024 . A . . END=10012147 GT:DP:GQ:MIN_DP:PL ./.:70:99:38:0,99,1485 ./.:66:99:47:0,119,1428 +20 10012148 . G . . END=10012157 GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012158 . A . . END=10012159 GT:DP:GQ:MIN_DP:PL ./.:35:84:34:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012160 . C . . END=10012162 GT:DP:GQ:MIN_DP:PL ./.:34:78:34:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012163 . G . . END=10012167 GT:DP:GQ:MIN_DP:PL ./.:34:81:33:0,81,1215 ./.:66:99:47:0,119,1428 +20 10012168 . C . . END=10012170 GT:DP:GQ:MIN_DP:PL ./.:31:78:29:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:61:29:0,61,1086 ./.:66:99:47:0,119,1428 +20 10012172 . C . . END=10012178 GT:DP:GQ:MIN_DP:PL ./.:29:72:29:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012179 . G . . END=10012188 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,1157 ./.:66:99:47:0,119,1428 +20 10012189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012190 . C . . END=10012196 GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:66:99:47:0,119,1428 +20 10012197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:93:32:0,93,1395 ./.:66:99:47:0,119,1428 +20 10012198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:66:99:47:0,119,1428 +20 10012199 . C . . END=10012200 GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:30:87:30:0,87,1305 ./.:66:99:47:0,119,1428 +20 10012202 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:62:32:0,62,1157 ./.:66:99:47:0,119,1428 +20 10012203 . C . . END=10012211 GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012212 . G . . END=10012215 GT:DP:GQ:MIN_DP:PL ./.:31:84:30:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012216 . C . . END=10012221 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012222 . T . . END=10012224 GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012225 . G . . END=10012229 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012230 . A . . END=10012234 GT:DP:GQ:MIN_DP:PL ./.:25:66:25:0,66,990 ./.:66:99:47:0,119,1428 +20 10012235 . A . . END=10012237 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:26:69:26:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012239 . G . . END=10012241 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012242 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,921 ./.:66:99:47:0,119,1428 +20 10012243 . T . . END=10012244 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012245 . C . . END=10012252 GT:DP:GQ:MIN_DP:PL ./.:25:66:24:0,66,990 ./.:66:99:47:0,119,1428 +20 10012253 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:48:24:0,48,893 ./.:66:99:47:0,119,1428 +20 10012254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,865 ./.:66:99:47:0,119,1428 +20 10012255 . C . . END=10012260 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012261 . T . . END=10012266 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012267 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:58:27:0,58,1061 ./.:66:99:47:0,119,1428 +20 10012268 . G . . END=10012277 GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:66:99:47:0,119,1428 +20 10012278 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012279 . G . . END=10012285 GT:DP:GQ:MIN_DP:PL ./.:25:69:24:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012286 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012287 . A . . END=10012299 GT:DP:GQ:MIN_DP:PL ./.:26:60:25:0,60,900 ./.:66:99:47:0,119,1428 +20 10012300 . G . . END=10012311 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,920 ./.:66:99:47:0,119,1428 +20 10012312 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:60:27:0,60,991 ./.:66:99:47:0,119,1428 +20 10012313 . G . . END=10012315 GT:DP:GQ:MIN_DP:PL ./.:27:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012316 . G . . END=10012320 GT:DP:GQ:MIN_DP:PL ./.:26:60:26:0,60,941 ./.:66:99:47:0,119,1428 +20 10012321 . G . . END=10012328 GT:DP:GQ:MIN_DP:PL ./.:27:75:27:0,75,1125 ./.:66:99:47:0,119,1428 +20 10012329 . G . . END=10012346 GT:DP:GQ:MIN_DP:PL ./.:25:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012347 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:58:24:0,58,884 ./.:66:99:47:0,119,1428 +20 10012348 . C . . END=10012351 GT:DP:GQ:MIN_DP:PL ./.:23:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:66:99:47:0,119,1428 +20 10012353 . G . . END=10012354 GT:DP:GQ:MIN_DP:PL ./.:24:51:23:0,51,765 ./.:66:99:47:0,119,1428 +20 10012355 . T . . END=10012357 GT:DP:GQ:MIN_DP:PL ./.:24:54:24:0,54,810 ./.:66:99:47:0,119,1428 +20 10012358 . G . . END=10012360 GT:DP:GQ:MIN_DP:PL ./.:23:51:23:0,51,765 ./.:66:99:47:0,119,1428 +20 10012361 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:48:23:0,48,720 ./.:66:99:47:0,119,1428 +20 10012362 . G T,A, . . DP=87;ExcessHet=3.01;RAW_MQandDP=290018,87 GT:AD:DP:GQ:PL:SB ./.:0,23,0,0:23:69:864,69,0,864,69,864,864,69,864,864:0,0,2,21 ./.:0,23,39,0:62:99:1646,970,901,677,0,562,1646,970,677,1646:0,0,29,33 +20 10012363 . G . . END=10012364 GT:DP:GQ:MIN_DP:PL ./.:22:51:21:0,51,765 ./.:57:99:55:0,120,1800 +20 10012365 . G . . END=10012372 GT:DP:GQ:MIN_DP:PL ./.:21:54:19:0,54,810 ./.:57:99:55:0,120,1800 +20 10012373 . G . . END=10012376 GT:DP:GQ:MIN_DP:PL ./.:18:51:17:0,51,616 ./.:57:99:55:0,120,1800 +20 10012377 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:57:99:55:0,120,1800 +20 10012378 . C . . . GT:DP:GQ:MIN_DP:PL ./.:18:42:18:0,42,604 ./.:57:99:55:0,120,1800 +20 10012379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:45:18:0,45,675 ./.:57:99:55:0,120,1800 +20 10012380 . G . . END=10012381 GT:DP:GQ:MIN_DP:PL ./.:18:42:18:0,42,630 ./.:57:99:55:0,120,1800 +20 10012382 . A . . END=10012383 GT:DP:GQ:MIN_DP:PL ./.:18:39:18:0,39,585 ./.:57:99:55:0,120,1800 +20 10012384 . T C, . . BaseQRankSum=-1.773e+00;DP=73;ExcessHet=3.01;MQRankSum=-8.110e-01;RAW_MQandDP=51286,18;ReadPosRankSum=0.800 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:10,8,0:18:99:.:258,0,355,288,379,667:0,10,2,6 ./.:.:57:99:55:0,120,1800,120,1800,1800 +20 10012385 . T . . END=10012386 GT:DP:GQ:MIN_DP:PL ./.:18:39:17:0,39,585 ./.:57:99:55:0,120,1800 +20 10012387 . T C, . . DP=73;ExcessHet=3.01;RAW_MQandDP=248459,73 GT:AD:DP:GQ:PL:SB ./.:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 ./.:0,56,0:56:99:1487,165,0,1487,165,1487:0,0,25,31 +20 10012388 . G . . END=10012395 GT:DP:GQ:MIN_DP:PL ./.:15:36:13:0,36,540 ./.:60:99:57:0,120,1800 +20 10012396 . G . . END=10012398 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:60:99:57:0,120,1800 +20 10012399 . G . . END=10012402 GT:DP:GQ:MIN_DP:PL ./.:16:45:15:0,45,561 ./.:60:99:57:0,120,1800 +20 10012403 . T . . . GT:DP:GQ:MIN_DP:PL ./.:15:17:15:0,17,521 ./.:60:99:57:0,120,1800 +20 10012404 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:42:14:0,42,564 ./.:60:99:57:0,120,1800 +20 10012405 . G . . END=10012409 GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012410 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:33:15:0,33,495 ./.:60:99:57:0,120,1800 +20 10012411 . C . . END=10012412 GT:DP:GQ:MIN_DP:PL ./.:15:30:14:0,30,450 ./.:60:99:57:0,120,1800 +20 10012413 . C . . END=10012416 GT:DP:GQ:MIN_DP:PL ./.:16:33:14:0,33,495 ./.:60:99:57:0,120,1800 +20 10012417 . C . . END=10012419 GT:DP:GQ:MIN_DP:PL ./.:16:36:15:0,36,540 ./.:60:99:57:0,120,1800 +20 10012420 . G . . END=10012422 GT:DP:GQ:MIN_DP:PL ./.:14:39:13:0,39,482 ./.:60:99:57:0,120,1800 +20 10012423 . G . . END=10012424 GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:60:99:57:0,120,1800 +20 10012425 . A . . END=10012426 GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012427 . C . . . GT:DP:GQ:MIN_DP:PL ./.:16:42:16:0,42,630 ./.:60:99:57:0,120,1800 +20 10012428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:17:45:17:0,45,675 ./.:60:99:57:0,120,1800 +20 10012429 . G . . END=10012431 GT:DP:GQ:MIN_DP:PL ./.:17:42:17:0,42,630 ./.:60:99:57:0,120,1800 +20 10012432 . C . . END=10012433 GT:DP:GQ:MIN_DP:PL ./.:18:45:17:0,45,675 ./.:60:99:57:0,120,1800 +20 10012434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:18:48:18:0,48,720 ./.:60:99:57:0,120,1800 +20 10012435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:51:19:0,51,765 ./.:60:99:57:0,120,1800 +20 10012436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:60:99:57:0,120,1800 +20 10012437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:57:20:0,57,855 ./.:60:99:57:0,120,1800 +20 10012438 . T . . END=10012440 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,787 ./.:60:99:57:0,120,1800 +20 10012441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012442 . A . . END=10012454 GT:DP:GQ:MIN_DP:PL ./.:22:60:21:0,60,815 ./.:60:99:57:0,120,1800 +20 10012455 . G . . END=10012456 GT:DP:GQ:MIN_DP:PL ./.:21:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012457 . G . . END=10012458 GT:DP:GQ:MIN_DP:PL ./.:22:60:22:0,60,900 ./.:60:99:57:0,120,1800 +20 10012459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:60:99:57:0,120,1800 +20 10012460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:60:99:57:0,120,1800 +20 10012461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:57:23:0,57,855 ./.:60:99:57:0,120,1800 +20 10012462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:49:23:0,49,825 ./.:60:99:57:0,120,1800 +20 10012463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:47:23:0,47,803 ./.:60:99:57:0,120,1800 +20 10012464 . A . . END=10012465 GT:DP:GQ:MIN_DP:PL ./.:22:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012466 . C . . END=10012467 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:60:99:57:0,120,1800 +20 10012468 . C . . END=10012470 GT:DP:GQ:MIN_DP:PL ./.:20:51:19:0,51,765 ./.:60:99:57:0,120,1800 +20 10012471 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:60:99:57:0,120,1800 +20 10012472 . G . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:60:99:57:0,120,1800 +20 10012473 . G . . END=10012474 GT:DP:GQ:MIN_DP:PL ./.:20:39:19:0,39,585 ./.:60:99:57:0,120,1800 +20 10012475 . C . . END=10012476 GT:DP:GQ:MIN_DP:PL ./.:20:36:19:0,36,540 ./.:60:99:57:0,120,1800 +20 10012477 . G . . END=10012478 GT:DP:GQ:MIN_DP:PL ./.:18:33:17:0,33,495 ./.:60:99:57:0,120,1800 +20 10012479 . A G, . . DP=71;ExcessHet=3.01;RAW_MQandDP=224731,71 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 ./.:0,54,0:54:99:0|1:10012479_A_G:2384,168,0,2384,168,2384:0,0,23,31 +20 10012480 . G . . END=10012482 GT:DP:GQ:MIN_DP:PL ./.:16:24:15:0,24,360 ./.:60:99:57:0,120,1800 +20 10012483 . G . . END=10012489 GT:DP:GQ:MIN_DP:PL ./.:13:27:12:0,27,405 ./.:60:99:57:0,120,1800 +20 10012490 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:22:11:0,22,359 ./.:60:99:57:0,120,1800 +20 10012491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,269 ./.:60:99:57:0,120,1800 +20 10012492 . G . . END=10012497 GT:DP:GQ:MIN_DP:PL ./.:10:27:9:0,27,304 ./.:60:99:57:0,120,1800 +20 10012498 . C G, . . DP=67;ExcessHet=3.01;RAW_MQandDP=203952,67 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 ./.:0,56,0:56:99:0|1:10012479_A_G:2544,172,0,2544,172,2544:0,0,28,28 +20 10012499 . G . . END=10012501 GT:DP:GQ:MIN_DP:PL ./.:11:27:9:0,27,334 ./.:59:99:56:0,120,1800 +20 10012502 . C . . END=10012503 GT:DP:GQ:MIN_DP:PL ./.:11:24:11:0,24,360 ./.:59:99:56:0,120,1800 +20 10012504 . C . . END=10012508 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:59:99:56:0,120,1800 +20 10012509 . A . . END=10012513 GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:59:99:56:0,120,1800 +20 10012514 . C . . END=10012515 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:59:99:56:0,120,1800 +20 10012516 . G . . END=10012517 GT:DP:GQ:MIN_DP:PL ./.:10:18:9:0,18,270 ./.:59:99:56:0,120,1800 +20 10012518 . T C, . . DP=62;ExcessHet=3.01;RAW_MQandDP=181508,62 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 ./.:0,52,0:52:99:0|1:10012479_A_G:2297,157,0,2297,157,2297:0,0,27,25 +20 10012519 . C . . END=10012520 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:56:99:54:0,99,1485 +20 10012521 . C T, . . BaseQRankSum=2.36;DP=65;ExcessHet=3.01;MQRankSum=-3.800e-02;RAW_MQandDP=19192,11;ReadPosRankSum=1.97 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:8,3,0:11:75:.:75,0,224,99,233,332:4,4,2,1 ./.:.:56:99:54:0,99,1485,99,1485,1485 +20 10012522 . A . . END=10012525 GT:DP:GQ:MIN_DP:PL ./.:11:24:9:0,24,360 ./.:56:99:54:0,99,1485 +20 10012526 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:21:8:0,21,315 ./.:56:99:54:0,99,1485 +20 10012527 . C . . . GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:56:99:54:0,99,1485 +20 10012528 . T . . END=10012529 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:53:93:52:0,93,1395 +20 10012530 . C . . END=10012531 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:54:87:53:0,87,1305 +20 10012532 . C . . END=10012536 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:53:72:51:0,72,1080 +20 10012537 . T . . END=10012542 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:53:60:51:0,60,900 +20 10012543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:50:57:50:0,57,855 +20 10012544 . C . . END=10012545 GT:DP:GQ:MIN_DP:PL ./.:7:18:6:0,18,188 ./.:51:54:50:0,54,810 +20 10012546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,174 ./.:51:54:50:0,54,810 +20 10012547 . G . . . GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,207 ./.:50:48:50:0,48,720 +20 10012548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,207 ./.:51:45:50:0,45,675 +20 10012549 . C . . . GT:DP:GQ:MIN_DP:PL ./.:6:1:6:0,1,186 ./.:51:45:50:0,45,675 +20 10012550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:45:50:0,45,675 +20 10012551 . T . . END=10012552 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:42:51:0,42,630 +20 10012553 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:50:39:50:0,39,585 +20 10012554 . G . . END=10012555 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:52:36:52:0,36,540 +20 10012556 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:53:33:53:0,33,495 +20 10012557 . G . . END=10012558 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:52:30:51:0,30,450 +20 10012559 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:15:51:0,15,225 +20 10012560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:9:51:0,9,135 +20 10012561 . T . . END=10012562 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,296 ./.:51:0:50:0,0,0 +20 10012563 . G . . END=10012564 GT:DP:GQ:MIN_DP:PL ./.:8:21:8:0,21,315 ./.:51:0:50:0,0,0 +20 10012565 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,261 ./.:51:0:50:0,0,0 +20 10012566 . C . . END=10012567 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,261 ./.:51:3:50:0,3,45 +20 10012568 . G . . END=10012569 GT:DP:GQ:MIN_DP:PL ./.:9:21:8:0,21,315 ./.:51:3:50:0,3,45 +20 10012570 . G GCA, . . DP=58;ExcessHet=3.01;RAW_MQandDP=153103,58 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 ./.:0,46,0:46:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,22,24 +20 10012571 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:27:11:0,27,405 ./.:51:0:51:0,0,0 +20 10012572 . GT G, . . DP=60;ExcessHet=3.01;RAW_MQandDP=157544,60 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 ./.:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012573 . T *, . . DP=60 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 ./.:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:50:0:50:0,0,0 +20 10012575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:51:21:51:0,21,1387 +20 10012576 . T . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:52:26:52:0,26,1439 +20 10012577 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:53:28:53:0,28,1291 +20 10012578 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:53:38:53:0,38,1313 +20 10012579 . G . . END=10012581 GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:52:99:51:0,99,1485 +20 10012582 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:99:51:0,99,1485 +20 10012583 . C . . END=10012585 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:90:51:0,90,1350 +20 10012586 . C . . END=10012587 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:84:51:0,84,1260 +20 10012588 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:51:75:49:0,75,1125 +20 10012589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:51:75:49:0,75,1125 +20 10012590 . C . . END=10012591 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:51:75:49:0,75,1125 +20 10012592 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:14:14:0,14,377 ./.:50:63:49:0,63,945 +20 10012593 . C . . END=10012594 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:50:63:49:0,63,945 +20 10012595 . A . . END=10012597 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:51:57:51:0,57,855 +20 10012598 . C . . END=10012600 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:50:51:49:0,51,765 +20 10012601 . G . . END=10012602 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:50:51:49:0,51,765 +20 10012603 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:50:48:50:0,48,720 +20 10012604 . C . . END=10012605 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:51:36:50:0,36,540 +20 10012606 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:49:33:45:0,33,495 +20 10012607 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:49:33:45:0,33,495 +20 10012608 . C . . END=10012609 GT:DP:GQ:MIN_DP:PL ./.:15:42:14:0,42,545 ./.:49:33:45:0,33,495 +20 10012610 . C . . END=10012612 GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:49:33:45:0,33,495 +20 10012613 . C . . END=10012615 GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:49:30:49:0,30,450 +20 10012616 . C . . END=10012618 GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:47:24:46:0,24,360 +20 10012619 . T . . END=10012620 GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,653 ./.:47:12:47:0,12,180 +20 10012621 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,672 ./.:47:12:47:0,12,180 +20 10012622 . G . . END=10012623 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:47:3:45:0,3,45 +20 10012624 . T . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:48:0:44:0,0,0 +20 10012625 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:57:20:0,57,855 ./.:48:0:44:0,0,0 +20 10012626 . C . . END=10012630 GT:DP:GQ:MIN_DP:PL ./.:21:60:21:0,60,900 ./.:48:0:44:0,0,0 +20 10012631 . C CG, . . BaseQRankSum=-1.030e+00;DP=65;ExcessHet=3.01;MQRankSum=-1.670e+00;RAW_MQandDP=189832,65;ReadPosRankSum=-1.813e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 ./.:0,43,0:43:99:0|1:10012631_C_CG:1933,132,0,1933,132,1933:0,0,20,23 +20 10012632 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:48:0:48:0,0,0 +20 10012633 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:45:52:45:0,52,1226 +20 10012634 . C . . END=10012635 GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:46:99:45:0,114,1710 +20 10012636 . G C, . . BaseQRankSum=2.71;DP=64;ExcessHet=3.01;MQRankSum=-1.513e+00;RAW_MQandDP=187532,64;ReadPosRankSum=-1.915e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 ./.:0,41,0:41:99:0|1:10012631_C_CG:1932,132,0,1932,132,1932:0,0,19,22 +20 10012637 . A . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:45:53:45:0,53,1153 +20 10012638 . G . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:44:51:44:0,51,1203 +20 10012639 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:44:99:41:0,100,1128 +20 10012640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:44:99:41:0,100,1128 +20 10012641 . T . . END=10012651 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:44:99:41:0,100,1128 +20 10012652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:43:95:43:0,95,1320 +20 10012653 . A . . END=10012662 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:47:99:40:0,110,1146 +20 10012663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:47:99:40:0,110,1146 +20 10012664 . C . . END=10012665 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:47:99:40:0,110,1146 +20 10012666 . C . . END=10012669 GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:47:99:40:0,110,1146 +20 10012670 . G . . END=10012671 GT:DP:GQ:MIN_DP:PL ./.:23:57:23:0,57,855 ./.:47:99:40:0,110,1146 +20 10012672 . C . . END=10012675 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:47:99:40:0,110,1146 +20 10012676 . C . . END=10012685 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:47:99:40:0,110,1146 +20 10012686 . G . . END=10012687 GT:DP:GQ:MIN_DP:PL ./.:29:84:29:0,84,1260 ./.:47:99:40:0,110,1146 +20 10012688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:66:28:0,66,1001 ./.:47:99:40:0,110,1146 +20 10012689 . C . . END=10012694 GT:DP:GQ:MIN_DP:PL ./.:29:84:28:0,84,1100 ./.:47:99:40:0,110,1146 +20 10012695 . A . . END=10012700 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012701 . G . . END=10012702 GT:DP:GQ:MIN_DP:PL ./.:33:87:33:0,87,1305 ./.:47:99:40:0,110,1146 +20 10012703 . G . . END=10012706 GT:DP:GQ:MIN_DP:PL ./.:34:90:32:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012707 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:78:33:0,78,1121 ./.:47:99:40:0,110,1146 +20 10012708 . G . . END=10012713 GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012714 . G C, . . DP=79;ExcessHet=3.01;RAW_MQandDP=257587,79 GT:AD:DP:GQ:PL:SB ./.:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 ./.:0,44,0:44:99:1341,132,0,1341,132,1341:0,0,21,23 +20 10012715 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:45:99:43:0,112,1275 +20 10012716 . A . . END=10012718 GT:DP:GQ:MIN_DP:PL ./.:36:93:36:0,93,1395 ./.:45:99:43:0,112,1275 +20 10012719 . G . . END=10012722 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:45:99:43:0,112,1275 +20 10012723 . G . . END=10012725 GT:DP:GQ:MIN_DP:PL ./.:37:72:37:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012726 . A . . END=10012727 GT:DP:GQ:MIN_DP:PL ./.:38:69:37:0,69,1035 ./.:45:99:43:0,112,1275 +20 10012728 . T . . END=10012730 GT:DP:GQ:MIN_DP:PL ./.:38:72:38:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012731 . C . . END=10012732 GT:DP:GQ:MIN_DP:PL ./.:38:69:37:0,69,1035 ./.:45:99:43:0,112,1275 +20 10012733 . G . . END=10012736 GT:DP:GQ:MIN_DP:PL ./.:31:72:27:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012737 . G . . END=10012739 GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012740 . C . . END=10012742 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:45:99:43:0,112,1275 +20 10012743 . C . . END=10012746 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012747 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:78:30:0,78,1170 ./.:45:99:43:0,112,1275 +20 10012748 . A . . END=10012750 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012751 . T C, . . DP=72;ExcessHet=3.01;RAW_MQandDP=230471,72 GT:AD:DP:GQ:PL:SB ./.:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 ./.:0,42,0:42:99:1298,125,0,1298,125,1298:0,0,21,21 +20 10012752 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:74:29:0,74,1014 ./.:51:99:43:0,110,1192 +20 10012754 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:51:99:43:0,110,1192 +20 10012755 . G . . END=10012756 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,908 ./.:51:99:43:0,110,1192 +20 10012757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1093 ./.:51:99:43:0,110,1192 +20 10012758 . C . . END=10012761 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,981 ./.:51:99:43:0,110,1192 +20 10012762 . A . . END=10012766 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,949 ./.:51:99:43:0,110,1192 +20 10012767 . C . . END=10012769 GT:DP:GQ:MIN_DP:PL ./.:32:75:31:0,75,1125 ./.:51:99:43:0,110,1192 +20 10012770 . G . . END=10012772 GT:DP:GQ:MIN_DP:PL ./.:33:81:33:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012773 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:79:31:0,79,1133 ./.:51:99:43:0,110,1192 +20 10012774 . A . . END=10012779 GT:DP:GQ:MIN_DP:PL ./.:31:81:28:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012780 . G . . END=10012782 GT:DP:GQ:MIN_DP:PL ./.:32:93:32:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012783 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:86:33:0,86,1233 ./.:51:99:43:0,110,1192 +20 10012784 . G . . END=10012785 GT:DP:GQ:MIN_DP:PL ./.:34:93:33:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012786 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:69:34:0,69,1237 ./.:51:99:43:0,110,1192 +20 10012787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:93:33:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012788 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:70:32:0,70,1178 ./.:51:99:43:0,110,1192 +20 10012789 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:86:34:0,86,1298 ./.:51:99:43:0,110,1192 +20 10012790 . T . . END=10012795 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012796 . T . . END=10012797 GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012798 . G . . END=10012808 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012810 . A . . END=10012819 GT:DP:GQ:MIN_DP:PL ./.:36:90:34:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:70:35:0,70,1358 ./.:51:99:43:0,110,1192 +20 10012821 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:78:35:0,78,1329 ./.:51:99:43:0,110,1192 +20 10012823 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012825 . A . . END=10012826 GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:51:99:43:0,110,1192 +20 10012827 . C . . END=10012838 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:51:99:43:0,110,1192 +20 10012839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:92:44:0,92,1324 +20 10012840 . A . . END=10012853 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:99:38:0,100,1084 +20 10012854 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:37:98:37:0,98,1108 +20 10012855 . A . . END=10012874 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:43:99:37:0,100,1096 +20 10012875 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:98:44:0,98,1282 +20 10012876 . T . . END=10012902 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:41:99:37:0,99,1139 +20 10012903 . G . . END=10012910 GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:41:99:37:0,99,1139 +20 10012911 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:40:86:40:0,86,1133 +20 10012912 . A . . END=10012914 GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:40:99:38:0,101,1145 +20 10012915 . G . . END=10012921 GT:DP:GQ:MIN_DP:PL ./.:37:93:36:0,93,1395 ./.:40:99:38:0,101,1145 +20 10012922 . A . . END=10012926 GT:DP:GQ:MIN_DP:PL ./.:38:87:36:0,87,1305 ./.:40:99:38:0,101,1145 +20 10012927 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:79:37:0,79,1391 ./.:40:99:38:0,101,1145 +20 10012928 . C . . END=10012968 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:40:99:38:0,101,1145 +20 10012969 . G A, . . BaseQRankSum=-3.050e-01;ClippingRankSum=0.00;DP=81;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=0.498 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:99:38:0,99,1485,99,1485,1485 ./.:18,25,0:43:99:.:643,0,410,696,485,1181:9,9,11,14 +20 10012970 . A . . END=10012996 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:44:99:42:0,112,1313 +20 10012997 . C T, . . BaseQRankSum=0.991;ClippingRankSum=0.00;DP=82;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=0.206 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:99:38:0,99,1485,99,1485,1485 ./.:19,25,0:44:99:.:648,0,454,705,529,1234:8,11,11,14 +20 10012998 . A . . END=10013026 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:43:99:39:0,100,1121 +20 10013027 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:40:94:40:0,94,1127 +20 10013028 . T . . END=10013041 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:38:99:34:0,99,999 +20 10013042 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:38:97:38:0,97,1036 +20 10013043 . G . . END=10013048 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:37:99:36:0,99,1485 +20 10013049 . A . . END=10013051 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:93:35:0,93,1395 +20 10013052 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:79:32:0,79,799 +20 10013053 . G . . END=10013059 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:34:81:32:0,81,867 +20 10013060 . T . . END=10013064 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:75:30:0,75,1125 +20 10013065 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:30:0,81,1215 +20 10013066 . C . . END=10013067 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:31:78:31:0,78,1170 +20 10013068 . C . . END=10013071 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:26:78:26:0,78,794 +20 10013073 . A . . END=10013075 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:29:81:29:0,81,1215 +20 10013076 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:29:75:29:0,75,830 +20 10013077 . C . . END=10013079 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013080 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:31:70:31:0,70,869 +20 10013081 . G . . END=10013083 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013084 . C . . END=10013085 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:90:31:0,90,1350 +20 10013086 . C . . END=10013087 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:82:31:0,82,810 +20 10013088 . G . . END=10013089 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:32:0,93,1395 +20 10013090 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:78:33:0,78,975 +20 10013091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:96:33:0,96,1440 +20 10013092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:82:33:0,82,1019 +20 10013093 . A . . END=10013095 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:32:0,93,1395 +20 10013096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:87:33:0,87,969 +20 10013097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:33:0,93,1395 +20 10013098 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:87:33:0,87,971 +20 10013099 . C . . END=10013101 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:93:31:0,93,984 +20 10013102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:66:30:0,66,872 +20 10013103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:88:33:0,88,1038 +20 10013104 . G . . END=10013108 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:99:33:0,99,1049 +20 10013109 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:86:35:0,86,1058 +20 10013110 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:36:99:36:0,99,1485 +20 10013111 . G . . END=10013115 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:96:32:0,96,1006 +20 10013116 . G . . END=10013117 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:99:33:0,99,1032 +20 10013118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:87:35:0,87,1019 +20 10013119 . C T, . . BaseQRankSum=2.72;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.131;RAW_MQandDP=273922,92;ReadPosRankSum=0.159 GT:AD:DP:GQ:PL:SB ./.:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 ./.:15,18,0:33:99:454,0,354,499,407,906:8,7,6,12 +20 10013120 . A . . END=10013121 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,102,1083 +20 10013122 . A . . END=10013136 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:31:0,90,1350 +20 10013137 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:80:32:0,80,967 +20 10013138 . A . . END=10013150 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:30:0,90,966 +20 10013151 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:87:34:0,87,1005 +20 10013152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10013153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10013154 . C . . END=10013155 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:96:33:0,96,1440 +20 10013156 . G . . END=10013157 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10013158 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:98:33:0,98,989 +20 10013159 . G . . END=10013160 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:34:0,102,1003 +20 10013161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:37:0,90,1060 +20 10013162 . A . . END=10013181 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:36:0,105,1034 +20 10013182 . A . . END=10013183 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:92:38:0,92,1108 +20 10013184 . A . . END=10013186 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:37:0,100,1130 +20 10013187 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:97:38:0,97,1095 +20 10013188 . T . . END=10013197 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:36:0,102,1077 +20 10013198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:85:34:0,85,990 +20 10013199 . T . . END=10013202 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:35:0,99,1045 +20 10013203 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:97:36:0,97,1062 +20 10013204 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10013205 . C . . END=10013207 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10013208 . T . . END=10013213 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:33:0,99,992 +20 10013214 . C . . END=10013215 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:91:32:0,91,993 +20 10013216 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10013217 . T . . END=10013218 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10013219 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10013220 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:84:36:0,84,1016 +20 10013221 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:96:37:0,96,1440 +20 10013222 . C . . END=10013223 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:87:37:0,87,1305 +20 10013224 . T . . END=10013225 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:36:0,90,1350 +20 10013226 . C . . END=10013231 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:81:33:0,81,1215 +20 10013232 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:70:33:0,70,914 +20 10013233 . T . . END=10013234 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:81:31:0,81,1215 +20 10013235 . A . . END=10013243 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:74:26:0,74,810 +20 10013244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,821 +20 10013245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:65:27:0,65,762 +20 10013246 . C . . END=10013248 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:75:25:0,75,769 +20 10013249 . C . . END=10013250 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:28:0,81,1215 +20 10013251 . C . . END=10013254 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:75:27:0,75,1125 +20 10013255 . T . . END=10013262 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:80:29:0,80,919 +20 10013263 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:62:28:0,62,836 +20 10013264 . C . . END=10013273 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:28:0,81,900 +20 10013274 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:67:30:0,67,876 +20 10013275 . A . . END=10013279 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:27:0,81,797 +20 10013280 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:78:26:0,78,737 +20 10013281 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:69:28:0,69,800 +20 10013282 . A . . END=10013283 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:28:0,81,810 +20 10013284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:71:29:0,71,795 +20 10013285 . T . . END=10013288 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:29:0,84,1260 +20 10013289 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:55:30:0,55,878 +20 10013290 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:30:0,84,1260 +20 10013291 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:55:30:0,55,847 +20 10013292 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:39:29:0,39,770 +20 10013293 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:78:29:0,78,1170 +20 10013294 . T . . END=10013296 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:30:0,81,1215 +20 10013297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:75:30:0,75,1125 +20 10013298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:56:29:0,56,823 +20 10013299 . C . . END=10013301 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:72:30:0,72,1080 +20 10013302 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:63:31:0,63,833 +20 10013303 . A . . END=10013322 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:72:25:0,72,687 +20 10013323 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:58:25:0,58,716 +20 10013324 . C . . END=10013327 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:75:25:0,75,748 +20 10013328 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:37:27:0,37,750 +20 10013329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,821 +20 10013330 . G . . END=10013338 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:70:27:0,70,776 +20 10013339 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:67:26:0,67,725 +20 10013340 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:75:27:0,75,1125 +20 10013341 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:59:25:0,59,684 +20 10013342 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:50:26:0,50,628 +20 10013343 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:45:26:0,45,675 +20 10013344 . T . . END=10013348 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:72:24:0,72,680 +20 10013349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:67:26:0,67,714 +20 10013350 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:45:26:0,45,726 +20 10013351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:72:26:0,72,1080 +20 10013352 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:23:35:23:0,35,564 +20 10013353 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:23:69:23:0,69,619 +20 10013354 . C . . END=10013355 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:75:25:0,75,679 +20 10013356 . G . . END=10013361 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:66:22:0,66,589 +20 10013362 . A . . END=10013364 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:72:28:0,72,1080 +20 10013365 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:53:29:0,53,808 +20 10013366 . C . . END=10013386 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:72:25:0,72,733 +20 10013387 . T . . END=10013389 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,804 +20 10013390 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:24:72:24:0,72,737 +20 10013391 . C . . END=10013392 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:80:27:0,80,767 +20 10013393 . G . . END=10013396 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:78:26:0,78,788 +20 10013397 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,816 +20 10013398 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:70:27:0,70,786 +20 10013399 . C . . END=10013407 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:29:0,81,1215 +20 10013408 . C . . END=10013409 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:32:0,90,1350 +20 10013410 . G . . END=10013413 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:81:31:0,81,1215 +20 10013414 . G . . END=10013415 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:32:0,90,1350 +20 10013416 . C . . END=10013421 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:82:30:0,82,901 +20 10013422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:72:30:0,72,895 +20 10013423 . C . . END=10013428 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:27:0,81,833 +20 10013429 . A . . END=10013430 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:77:30:0,77,855 +20 10013431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:57:30:0,57,829 +20 10013432 . A . . END=10013433 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:28:0,81,1215 +20 10013434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:90:32:0,90,1350 +20 10013435 . A . . END=10013436 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:81:31:0,81,935 +20 10013437 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:47:32:0,47,885 +20 10013438 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:39:32:0,39,823 +20 10013439 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:67:32:0,67,916 +20 10013440 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:46:32:0,46,844 +20 10013441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:33:0,90,1350 +20 10013442 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:54:33:0,54,925 +20 10013443 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:64:32:0,64,907 +20 10013444 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:27:31:0,27,789 +20 10013445 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,1260 +20 10013446 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:69:32:0,69,933 +20 10013447 . A . . END=10013454 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:29:0,84,1260 +20 10013455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:52:29:0,52,743 +20 10013456 . A . . END=10013459 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:30:0,84,1260 +20 10013460 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:64:29:0,64,844 +20 10013461 . C . . END=10013480 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:28:0,81,854 +20 10013481 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:63:31:0,63,923 +20 10013482 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:90:30:0,90,923 +20 10013483 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:53:29:0,53,769 +20 10013484 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:87:29:0,87,820 +20 10013485 . C . . END=10013486 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:92:31:0,92,932 +20 10013487 . A . . END=10013488 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1017 +20 10013489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:68:34:0,68,1014 +20 10013490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1090 +20 10013491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:91:34:0,91,1049 +20 10013492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1111 +20 10013493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:94:35:0,94,1100 +20 10013494 . G . . END=10013502 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:34:0,99,1080 +20 10013503 . C . . END=10013506 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:93:37:0,93,1395 +20 10013507 . C . . END=10013508 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:87:35:0,87,1305 +20 10013509 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:90:36:0,90,1350 +20 10013510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:74:36:0,74,1023 +20 10013511 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:99:37:0,99,1485 +20 10013512 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:56:36:0,56,950 +20 10013513 . G . . END=10013519 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,99,1055 +20 10013520 . C . . END=10013521 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:73:33:0,73,980 +20 10013522 . T . . END=10013573 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:48:99:35:0,105,1074 +20 10013574 . G A, . . BaseQRankSum=3.47;DP=104;ExcessHet=3.01;MQRankSum=-2.710e-01;RAW_MQandDP=232598,69;ReadPosRankSum=0.706 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:38,31,0:69:99:.:1079,0,1301,1194,1394,2588:15,23,7,24 ./.:.:48:99:35:0,105,1074,105,1074,1074 +20 10013575 . T . . END=10013696 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:99:35:0,105,1074 +20 10013697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:94:46:0,94,1320 +20 10013698 . T . . END=10013730 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:40:0,99,1239 +20 10013731 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:95:42:0,95,1317 +20 10013732 . C . . END=10013754 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:40:0,111,1192 +20 10013755 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:88:41:0,88,1234 +20 10013756 . C . . END=10013805 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:38:0,102,1200 +20 10013806 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:98:39:0,98,1173 +20 10013807 . T . . END=10013813 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:99:36:0,102,1119 +20 10013814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:98:39:0,98,1170 +20 10013815 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:38:99:38:0,111,1665 +20 10013816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:38:71:38:0,71,1106 +20 10013817 . A . . END=10013818 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:99:38:0,111,1665 +20 10013819 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:97:39:0,97,1204 +20 10013820 . T . . END=10013842 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:40:99:39:0,105,1181 +20 10013843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:68:42:0,68,1214 +20 10013844 . G . . END=10013912 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:39:0,107,1199 +20 10013913 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:97:43:0,97,1293 +20 10013914 . A . . END=10013922 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:40:0,108,1294 +20 10013923 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:95:41:0,95,1270 +20 10013924 . A . . END=10013982 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:99:36:0,99,1199 +20 10013983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:84:39:0,84,1128 +20 10013984 . A . . END=10014081 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:36:0,106,1114 +20 10014082 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:47:95:47:0,95,1287 +20 10014083 . A . . END=10014332 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:99:41:0,102,1280 +20 10014333 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:96:48:0,96,1341 +20 10014334 . G . . END=10014412 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:51:99:45:0,109,1391 +20 10014413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:54:93:54:0,93,1564 +20 10014414 . T . . END=10014423 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:49:99:47:0,117,1395 +20 10014424 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:95:48:0,95,1430 +20 10014425 . T . . END=10014480 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:99:43:0,101,1303 +20 10014481 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:45:89:45:0,89,1257 +20 10014482 . T . . END=10014493 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:99:44:0,105,1331 +20 10014494 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:44:78:44:0,78,1281 +20 10014495 . T . . END=10014510 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:41:0,120,1800 +20 10014511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:40:95:40:0,95,1204 +20 10014512 . T . . END=10014589 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:47:99:40:0,104,1206 +20 10014590 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1625 ./.:47:99:40:0,104,1206 +20 10014591 . T . . END=10014753 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:47:99:40:0,104,1206 +20 10014754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:43:98:43:0,98,1290 +20 10014755 . C . . END=10014760 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:42:99:40:0,117,1755 +20 10014761 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:39:87:39:0,87,1185 +20 10014762 . C . . END=10014911 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:42:99:38:0,99,1175 +20 10014912 . T . . END=10014914 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:96:37:0,96,1440 +20 10014915 . C . . END=10014934 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:99:34:0,102,1102 +20 10014935 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:36:87:36:0,87,1114 +20 10014936 . G . . END=10014947 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:36:99:35:0,99,1108 +20 10014948 . T . . END=10014949 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:35:90:34:0,90,1350 +20 10014950 . C . . END=10014962 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:81:32:0,81,1063 +20 10014963 . G . . END=10014970 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:33:72:31:0,72,1080 +20 10014971 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:62:34:0,62,958 +20 10014972 . A . . END=10014973 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:72:33:0,72,1080 +20 10014974 . A . . END=10014978 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:63:31:0,63,945 +20 10014979 . G . . END=10014980 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:35:54:34:0,54,810 +20 10014981 . A . . END=10014982 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:37:57:37:0,57,855 +20 10014983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:54:38:0,54,810 +20 10014984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:51:38:0,51,765 +20 10014985 . A . . END=10014987 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:54:37:0,54,810 +20 10014988 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:42:38:0,42,630 +20 10014989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:39:38:0,39,585 +20 10014990 . C CAT, . . BaseQRankSum=1.93;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=3.11;RAW_MQandDP=452269,123;ReadPosRankSum=0.144 GT:AD:DP:GQ:PL:SB ./.:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 ./.:12,22,0:34:99:735,0,363,772,429,1201:3,9,10,12 +20 10014991 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:0:38:0,0,0 +20 10014992 . T . . END=10014993 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:35:0,99,1485 +20 10014994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:83:35:0,83,1046 +20 10014995 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:73:35:0,73,1032 +20 10014996 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:89:35:0,89,1084 +20 10014997 . A . . END=10014998 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:99:35:0,99,1485 +20 10014999 . A . . END=10015002 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:32:0,90,1350 +20 10015003 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:87:34:0,87,1305 +20 10015004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:35:0,90,1350 +20 10015005 . A . . END=10015015 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:30:0,81,1215 +20 10015016 . T . . END=10015017 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:78:28:0,78,1170 +20 10015018 . T . . END=10015023 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:81:30:0,81,1215 +20 10015024 . A . . END=10015025 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:76:31:0,76,896 +20 10015026 . T . . END=10015034 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:28:0,81,1215 +20 10015035 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:28:72:28:0,72,811 +20 10015036 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:29:0,84,1260 +20 10015037 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:76:29:0,76,792 +20 10015038 . A . . END=10015039 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:28:0,81,819 +20 10015040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:74:30:0,74,866 +20 10015041 . A . . END=10015045 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:28:0,84,832 +20 10015046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:60:30:0,60,841 +20 10015047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:78:30:0,78,883 +20 10015048 . T . . END=10015052 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:87:29:0,87,842 +20 10015053 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:72:29:0,72,847 +20 10015054 . T . . END=10015056 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:29:0,81,855 +20 10015057 . T . . END=10015059 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:28:78:28:0,78,1170 +20 10015060 . G . . END=10015067 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:29:0,81,1215 +20 10015068 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10015069 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:75:31:0,75,891 +20 10015070 . A . . END=10015071 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015072 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:76:32:0,76,928 +20 10015073 . T . . END=10015074 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:32:0,90,1350 +20 10015075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:82:33:0,82,960 +20 10015076 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:90:33:0,90,1350 +20 10015077 . G . . END=10015078 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:87:33:0,87,1305 +20 10015079 . G . . END=10015084 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:93:32:0,93,1395 +20 10015085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:76:34:0,76,995 +20 10015086 . A . . END=10015092 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:31:0,90,1350 +20 10015093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:80:32:0,80,941 +20 10015094 . G . . END=10015097 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:31:0,90,1350 +20 10015098 . T . . END=10015100 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:87:31:0,87,1305 +20 10015101 . T . . END=10015106 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:90:32:0,90,1350 +20 10015107 . T . . END=10015109 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:33:0,99,1030 +20 10015110 . A . . END=10015111 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015112 . G . . END=10015113 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:84:31:0,84,1260 +20 10015114 . C . . END=10015122 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:33:0,90,1350 +20 10015123 . A . . END=10015124 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:99:33:0,99,1032 +20 10015125 . G . . END=10015130 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,971 +20 10015131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:81:33:0,81,971 +20 10015132 . C . . END=10015136 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015137 . T . . END=10015147 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:34:0,99,1057 +20 10015148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:79:38:0,79,1106 +20 10015149 . T . . END=10015153 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:99:37:0,108,1620 +20 10015154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:39:90:39:0,90,1194 +20 10015155 . T . . END=10015158 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:37:0,99,1485 +20 10015159 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:98:38:0,98,1209 +20 10015160 . A . . END=10015161 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:99:38:0,99,1485 +20 10015162 . T . . END=10015181 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:90:31:0,90,1010 +20 10015182 . C . . END=10015183 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:34:0,99,1485 +20 10015184 . A . . END=10015190 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015191 . G . . END=10015193 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:34:0,99,1485 +20 10015194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:96:32:0,96,1019 +20 10015195 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:86:33:0,86,980 +20 10015196 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:96:32:0,96,953 +20 10015197 . A . . END=10015198 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:99:33:0,99,994 +20 10015199 . A . . END=10015200 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:83:33:0,83,1014 +20 10015202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:96:34:0,96,1440 +20 10015203 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:79:34:0,79,984 +20 10015204 . C . . END=10015208 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:90:33:0,90,1350 +20 10015209 . A . . END=10015219 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:84:30:0,84,1260 +20 10015220 . G . . END=10015222 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:78:29:0,78,1170 +20 10015223 . T . . END=10015227 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:81:30:0,81,1215 +20 10015228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:67:31:0,67,891 +20 10015229 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:74:31:0,74,896 +20 10015230 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:69:29:0,69,847 +20 10015231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:73:29:0,73,871 +20 10015232 . G . . END=10015236 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:28:0,84,862 +20 10015237 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:69:29:0,69,822 +20 10015238 . A . . END=10015239 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:87:29:0,87,892 +20 10015240 . T . . END=10015247 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:30:0,90,924 +20 10015248 . C . . END=10015253 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:81:32:0,81,1027 +20 10015254 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:74:35:0,74,1003 +20 10015255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:87:35:0,87,1305 +20 10015256 . T . . END=10015258 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:32:0,90,1350 +20 10015259 . T . . END=10015269 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:28:0,81,1215 +20 10015270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:79:32:0,79,901 +20 10015271 . T . . END=10015290 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:81:29:0,81,880 +20 10015291 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:90:31:0,90,1350 +20 10015292 . A . . END=10015293 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:87:29:0,87,917 +20 10015294 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:78:31:0,78,961 +20 10015295 . T . . END=10015301 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10015302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:63:31:0,63,871 +20 10015303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015304 . A . . END=10015311 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:99:33:0,99,1039 +20 10015312 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:85:37:0,85,1132 +20 10015313 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:98:37:0,98,1148 +20 10015314 . T . . END=10015316 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,102,1530 +20 10015317 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:93:37:0,93,1113 +20 10015318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:84:37:0,84,1101 +20 10015319 . A . . END=10015322 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:96:36:0,96,1440 +20 10015323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,99,1485 +20 10015324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:94:37:0,94,1139 +20 10015325 . C . . END=10015327 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,102,1530 +20 10015328 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:92:36:0,92,1078 +20 10015329 . A . . END=10015330 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:35:0,102,1530 +20 10015331 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:97:36:0,97,1106 +20 10015332 . T . . END=10015338 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,99,1090 +20 10015339 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:76:37:0,76,1055 +20 10015340 . G . . END=10015342 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,100,1085 +20 10015343 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:94:35:0,94,1019 +20 10015344 . T . . END=10015348 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,102,1102 +20 10015349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:98:38:0,98,1161 +20 10015350 . G . . END=10015385 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:40:99:37:0,100,1049 +20 10015386 . G . . END=10015388 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:40:99:37:0,100,1049 +20 10015389 . A . . END=10015390 GT:DP:GQ:MIN_DP:PL ./.:38:81:38:0,81,1215 ./.:40:99:37:0,100,1049 +20 10015391 . G . . END=10015392 GT:DP:GQ:MIN_DP:PL ./.:37:78:36:0,78,1170 ./.:40:99:37:0,100,1049 +20 10015393 . G . . END=10015399 GT:DP:GQ:MIN_DP:PL ./.:36:81:34:0,81,1215 ./.:40:99:37:0,100,1049 +20 10015400 . G . . END=10015402 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:40:99:37:0,100,1049 +20 10015403 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:38:97:38:0,97,1098 +20 10015404 . A . . END=10015406 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:38:99:35:0,99,1142 +20 10015407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:38:99:35:0,99,1142 +20 10015408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:38:99:35:0,99,1142 +20 10015409 . G . . END=10015410 GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:38:99:35:0,99,1142 +20 10015411 . G . . END=10015415 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:38:99:35:0,99,1142 +20 10015416 . G . . END=10015420 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,844 ./.:38:99:35:0,99,1142 +20 10015421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:38:28:0,38,931 ./.:38:99:35:0,99,1142 +20 10015422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:75:27:0,75,1125 ./.:40:81:40:0,81,1107 +20 10015423 . A . . END=10015427 GT:DP:GQ:MIN_DP:PL ./.:30:75:27:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015428 . C . . END=10015429 GT:DP:GQ:MIN_DP:PL ./.:30:69:29:0,69,1035 ./.:39:99:34:0,102,1067 +20 10015430 . A . . END=10015434 GT:DP:GQ:MIN_DP:PL ./.:31:72:30:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015435 . G . . END=10015442 GT:DP:GQ:MIN_DP:PL ./.:27:60:26:0,60,900 ./.:39:99:34:0,102,1067 +20 10015443 . C . . END=10015444 GT:DP:GQ:MIN_DP:PL ./.:30:72:29:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015445 . G . . END=10015446 GT:DP:GQ:MIN_DP:PL ./.:29:69:28:0,69,1035 ./.:39:99:34:0,102,1067 +20 10015447 . G . . END=10015450 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015451 . C . . END=10015452 GT:DP:GQ:MIN_DP:PL ./.:29:81:28:0,81,1215 ./.:39:99:34:0,102,1067 +20 10015453 . C . . END=10015457 GT:DP:GQ:MIN_DP:PL ./.:27:75:27:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015458 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:27:0,57,940 ./.:39:99:34:0,102,1067 +20 10015459 . A . . END=10015460 GT:DP:GQ:MIN_DP:PL ./.:27:75:26:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:39:99:34:0,102,1067 +20 10015462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:37:94:37:0,94,1114 +20 10015463 . C . . END=10015467 GT:DP:GQ:MIN_DP:PL ./.:32:93:31:0,93,1159 ./.:37:99:36:0,108,1008 +20 10015468 . C . . END=10015469 GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:37:99:36:0,108,1008 +20 10015470 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:37:98:37:0,98,1118 +20 10015471 . A . . END=10015472 GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:38:99:37:0,99,1485 +20 10015473 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:96:33:0,96,1440 ./.:38:99:37:0,99,1485 +20 10015474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:82:33:0,82,1161 ./.:38:99:37:0,99,1485 +20 10015475 . A . . END=10015478 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1145 ./.:36:95:36:0,95,1065 +20 10015479 . C . . END=10015499 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1145 ./.:38:99:35:0,99,1046 +20 10015500 . C . . END=10015504 GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1240 ./.:38:99:35:0,99,1046 +20 10015505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:61:32:0,61,1132 ./.:38:99:35:0,99,1046 +20 10015506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:81:32:0,81,1215 ./.:38:99:35:0,99,1046 +20 10015507 . C . . END=10015513 GT:DP:GQ:MIN_DP:PL ./.:30:72:29:0,72,1080 ./.:38:99:35:0,99,1046 +20 10015514 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:35:93:35:0,93,1071 +20 10015515 . G . . END=10015522 GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:37:99:35:0,102,1077 +20 10015523 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,855 ./.:37:93:37:0,93,1395 +20 10015524 . G . . END=10015527 GT:DP:GQ:MIN_DP:PL ./.:23:51:23:0,51,765 ./.:35:66:32:0,66,990 +20 10015528 . G . . END=10015532 GT:DP:GQ:MIN_DP:PL ./.:24:54:22:0,54,810 ./.:35:66:32:0,66,990 +20 10015533 . G . . END=10015534 GT:DP:GQ:MIN_DP:PL ./.:20:48:20:0,48,720 ./.:35:66:32:0,66,990 +20 10015535 . A . . . GT:DP:GQ:MIN_DP:PL ./.:20:45:20:0,45,675 ./.:35:66:32:0,66,990 +20 10015536 . G . . END=10015546 GT:DP:GQ:MIN_DP:PL ./.:18:33:15:0,33,495 ./.:31:36:30:0,36,540 +20 10015547 . GGGCGGAGGCGGAGGCGGA G, . . BaseQRankSum=-6.510e-01;ClippingRankSum=0.00;DP=46;ExcessHet=3.01;MQRankSum=-8.130e-01;RAW_MQandDP=114200,31;ReadPosRankSum=-4.540e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:15:24:15:.:.:0,24,360,24,360,360 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015548 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015549 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015550 . C *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015551 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015552 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015553 . A *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015554 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015555 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015556 . C *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015557 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015558 . GA G, . . BaseQRankSum=2.93;ClippingRankSum=0.00;DP=35;ExcessHet=3.01;MQRankSum=1.30;RAW_MQandDP=107000,29;ReadPosRankSum=1.42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:12,16,0:28:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015559 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:12,16,0:28:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015560 . GGCGGAGGCGGA G, . . BaseQRankSum=2.91;ClippingRankSum=0.00;DP=36;ExcessHet=3.01;MQRankSum=1.35;RAW_MQandDP=110600,30;ReadPosRankSum=1.70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015561 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015562 . C *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015563 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015564 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015565 . A *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015566 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015567 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015568 . C *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015569 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015570 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015571 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015572 . G . . END=10015579 GT:DP:GQ:MIN_DP:PL ./.:5:3:5:0,3,45 ./.:29:69:28:0,69,1035 +20 10015580 . C . . . GT:DP:GQ:MIN_DP:PL ./.:5:3:5:0,3,45 ./.:28:72:26:0,72,1080 +20 10015581 . G . . END=10015587 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:28:72:26:0,72,1080 +20 10015588 . G . . . GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:26:47:26:0,47,774 +20 10015589 . A . . END=10015590 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:25:42:24:0,42,700 +20 10015591 . G . . END=10015595 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:25:72:24:0,72,732 +20 10015596 . G . . END=10015598 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:29:84:28:0,84,836 +20 10015599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,109 ./.:29:84:28:0,84,836 +20 10015600 . G . . END=10015603 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,166 ./.:32:90:30:0,90,881 +20 10015604 . C . . END=10015610 GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,158 ./.:32:90:30:0,90,881 +20 10015611 . C . . END=10015614 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,193 ./.:32:90:30:0,90,881 +20 10015615 . C . . . GT:DP:GQ:MIN_DP:PL ./.:7:21:7:0,21,279 ./.:32:90:30:0,90,881 +20 10015616 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:33:79:33:0,79,987 +20 10015617 . A . . END=10015621 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,254 ./.:33:93:31:0,93,922 +20 10015622 . G . . END=10015623 GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,329 ./.:33:93:31:0,93,922 +20 10015624 . A . . END=10015630 GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,347 ./.:33:93:31:0,93,922 +20 10015631 . G . . END=10015632 GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,347 ./.:35:99:33:0,99,990 +20 10015633 . T . . END=10015637 GT:DP:GQ:MIN_DP:PL ./.:12:36:12:0,36,471 ./.:35:99:33:0,99,990 +20 10015638 . C . . END=10015641 GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:36:93:35:0,93,1395 +20 10015642 . C . . END=10015652 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:34:81:32:0,81,1215 +20 10015653 . T . . . GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:32:74:32:0,74,974 +20 10015654 . G . . END=10015656 GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:33:84:31:0,84,1260 +20 10015657 . T . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:32:73:32:0,73,971 +20 10015658 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:32:87:31:0,87,1305 +20 10015659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:32:87:31:0,87,1305 +20 10015660 . C . . END=10015661 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:32:90:31:0,90,938 +20 10015662 . G . . END=10015668 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:32:90:31:0,90,938 +20 10015669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:33:88:33:0,88,1000 +20 10015670 . C . . END=10015673 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:34:96:34:0,96,1440 +20 10015674 . C . . END=10015675 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:36:99:35:0,99,1485 +20 10015676 . G . . END=10015678 GT:DP:GQ:MIN_DP:PL ./.:11:27:11:0,27,405 ./.:36:99:35:0,99,1485 +20 10015679 . C T, . . BaseQRankSum=1.79;ClippingRankSum=0.00;DP=43;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=157400,43;ReadPosRankSum=0.497 GT:AD:DP:GQ:PL:SB ./.:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 ./.:22,11,0:33:99:241,0,808,310,841,1150:11,11,8,3 +20 10015680 . G . . END=10015683 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:36:99:35:0,105,1051 +20 10015684 . C . . END=10015687 GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:36:99:35:0,105,1051 +20 10015688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,292 ./.:38:97:38:0,97,1088 +20 10015689 . G . . END=10015690 GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,292 ./.:39:99:37:0,108,1620 +20 10015691 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:39:99:37:0,108,1620 +20 10015692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:39:92:39:0,92,1165 +20 10015693 . T . . END=10015701 GT:DP:GQ:MIN_DP:PL ./.:11:27:10:0,27,405 ./.:39:99:36:0,108,1000 +20 10015702 . C . . END=10015703 GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:39:99:36:0,108,1000 +20 10015704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:37:95:37:0,95,1119 +20 10015705 . C . . END=10015707 GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:38:99:38:0,105,1112 +20 10015708 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:38:99:38:0,105,1112 +20 10015709 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:38:99:38:0,105,1112 +20 10015710 . G . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:38:97:38:0,97,992 +20 10015711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:41:99:41:0,111,1665 +20 10015712 . T . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:41:94:41:0,94,1174 +20 10015713 . C . . END=10015714 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:40:99:39:0,111,1101 +20 10015715 . C . . END=10015716 GT:DP:GQ:MIN_DP:PL ./.:13:33:13:0,33,495 ./.:40:99:39:0,111,1101 +20 10015717 . T . . END=10015723 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:40:99:39:0,111,1101 +20 10015724 . G . . END=10015725 GT:DP:GQ:MIN_DP:PL ./.:13:33:12:0,33,495 ./.:40:99:39:0,111,1101 +20 10015726 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:21:12:0,21,330 ./.:40:99:39:0,111,1101 +20 10015727 . C . . END=10015728 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:40:99:39:0,111,1101 +20 10015729 . C A, . . BaseQRankSum=1.28;ClippingRankSum=0.00;DP=52;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=-1.448e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:15:42:15:0,42,630,42,630,630 ./.:13,24,0:37:99:.:600,0,373,638,444,1083:10,3,11,13 +20 10015730 . G . . END=10015732 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:43:99:41:0,117,1249 +20 10015733 . T . . END=10015734 GT:DP:GQ:MIN_DP:PL ./.:16:45:16:0,45,675 ./.:43:99:41:0,117,1249 +20 10015735 . C . . END=10015736 GT:DP:GQ:MIN_DP:PL ./.:16:39:16:0,39,585 ./.:43:99:41:0,117,1249 +20 10015737 . G . . . GT:DP:GQ:MIN_DP:PL ./.:16:42:16:0,42,630 ./.:43:99:41:0,117,1249 +20 10015738 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:45:17:0,45,675 ./.:43:99:41:0,117,1249 +20 10015739 . G . . . GT:DP:GQ:MIN_DP:PL ./.:16:48:16:0,48,558 ./.:43:99:41:0,117,1249 +20 10015740 . G . . END=10015742 GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:43:99:41:0,117,1249 +20 10015743 . C . . END=10015747 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:43:99:41:0,117,1249 +20 10015748 . G . . END=10015752 GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,608 ./.:43:99:41:0,117,1249 +20 10015753 . T . . END=10015760 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,757 ./.:43:99:41:0,117,1249 +20 10015761 . T C, . . BaseQRankSum=-1.982e+00;DP=61;ExcessHet=3.01;MQRankSum=1.29;RAW_MQandDP=216841,61;ReadPosRankSum=1.80 GT:AD:DP:GQ:PL:SB ./.:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 ./.:0,39,0:39:99:1395,117,0,1395,117,1395:0,0,20,19 +20 10015762 . A . . END=10015766 GT:DP:GQ:MIN_DP:PL ./.:23:66:22:0,66,839 ./.:47:99:40:0,107,1212 +20 10015767 . C . . END=10015769 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:47:99:40:0,107,1212 +20 10015770 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:47:99:40:0,107,1212 +20 10015771 . C . . END=10015773 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015774 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:47:99:40:0,107,1212 +20 10015775 . C . . END=10015779 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1350 ./.:47:99:40:0,107,1212 +20 10015780 . C . . END=10015851 GT:DP:GQ:MIN_DP:PL ./.:43:99:36:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:45:77:45:0,77,1567 ./.:47:99:40:0,107,1212 +20 10015853 . C . . END=10015855 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015856 . A . . END=10015857 GT:DP:GQ:MIN_DP:PL ./.:41:94:41:0,94,1440 ./.:47:99:40:0,107,1212 +20 10015858 . G . . END=10015859 GT:DP:GQ:MIN_DP:PL ./.:42:99:41:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015860 . C . . END=10015861 GT:DP:GQ:MIN_DP:PL ./.:42:90:42:0,90,1350 ./.:47:99:40:0,107,1212 +20 10015862 . C . . END=10015865 GT:DP:GQ:MIN_DP:PL ./.:41:81:38:0,81,1215 ./.:47:99:40:0,107,1212 +20 10015866 . T . . END=10015867 GT:DP:GQ:MIN_DP:PL ./.:38:72:37:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015868 . G . . END=10015885 GT:DP:GQ:MIN_DP:PL ./.:27:63:23:0,63,945 ./.:47:99:40:0,107,1212 +20 10015886 . G . . END=10015889 GT:DP:GQ:MIN_DP:PL ./.:27:72:25:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015890 . A . . END=10015895 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:47:99:40:0,107,1212 +20 10015896 . G . . END=10015907 GT:DP:GQ:MIN_DP:PL ./.:34:90:30:0,90,1180 ./.:47:99:40:0,107,1212 +20 10015908 . C . . END=10015977 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015978 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:97:37:0,97,1135 +20 10015979 . G . . END=10015986 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:35:0,99,1118 +20 10015987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:87:38:0,87,1138 +20 10015988 . A . . END=10015991 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:96:35:0,96,1440 +20 10015992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:37:0,99,1485 +20 10015993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:96:35:0,96,1440 +20 10015994 . C . . END=10016014 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:35:0,99,1030 +20 10016015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:87:36:0,87,1088 +20 10016016 . C . . END=10016018 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:36:0,99,1485 +20 10016019 . C . . END=10016020 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:96:36:0,96,1440 +20 10016021 . C . . END=10016022 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:37:0,99,1485 +20 10016023 . A . . END=10016026 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:90:35:0,90,1350 +20 10016027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:84:34:0,84,1260 +20 10016028 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:75:34:0,75,1007 +20 10016029 . T . . END=10016030 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1305 +20 10016031 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:35:0,90,1350 +20 10016032 . A . . END=10016034 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:33:0,87,983 +20 10016035 . C . . END=10016041 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:31:0,90,992 +20 10016042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:77:32:0,77,960 +20 10016043 . C . . END=10016046 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:96:32:0,96,992 +20 10016047 . A . . END=10016048 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:99:34:0,102,1071 +20 10016049 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:34:0,90,1012 +20 10016050 . T . . END=10016056 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1093 +20 10016057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:83:36:0,83,1107 +20 10016058 . G . . END=10016062 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:99:34:0,102,1054 +20 10016063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:92:35:0,92,1103 +20 10016064 . A . . END=10016084 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:35:0,99,1485 +20 10016085 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:96:40:0,96,1238 +20 10016086 . G . . END=10016206 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:53:99:38:0,106,1212 +20 10016207 . C G, . . BaseQRankSum=1.27;ClippingRankSum=0.00;DP=93;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=208800,58;ReadPosRankSum=-1.090e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:35:0,99,1485,99,1485,1485 ./.:30,28,0:58:99:.:688,0,722,778,806,1583:11,19,15,13 +20 10016208 . T . . END=10016403 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:47:99:39:0,106,1245 +20 10016404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:91:38:0,91,1136 +20 10016405 . T . . END=10016424 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:99:37:0,99,1145 +20 10016425 . T . . END=10016431 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:35:0,93,1395 +20 10016432 . A . . END=10016442 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:35:0,99,1142 +20 10016443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:36:0,93,1102 +20 10016444 . C . . END=10016458 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1099 +20 10016459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:97:36:0,97,1094 +20 10016460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:84:36:0,84,1033 +20 10016461 . A . . END=10016468 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:35:0,99,1485 +20 10016469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:81:35:0,81,1051 +20 10016470 . T . . END=10016481 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1047 +20 10016482 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:85:35:0,85,1042 +20 10016483 . C . . END=10016491 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:33:0,90,1350 +20 10016492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:74:35:0,74,1062 +20 10016493 . C . . END=10016498 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:93:33:0,93,1395 +20 10016499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:88:33:0,88,1008 +20 10016500 . T . . END=10016501 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:90:33:0,90,1350 +20 10016502 . T . . END=10016503 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:82:33:0,82,938 +20 10016504 . A . . END=10016506 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:31:0,90,1350 +20 10016507 . T . . END=10016528 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:81:29:0,81,874 +20 10016529 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:90:31:0,90,1350 +20 10016530 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:78:31:0,78,861 +20 10016531 . A . . END=10016532 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:93:34:0,93,1395 +20 10016533 . C . . END=10016535 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1032 +20 10016536 . G . . END=10016537 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:31:0,93,936 +20 10016538 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:60:32:0,60,939 +20 10016539 . C . . END=10016540 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:31:0,93,960 +20 10016541 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:99:33:0,99,1051 +20 10016542 . C . . END=10016545 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:93:33:0,93,1395 +20 10016546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:84:33:0,84,1015 +20 10016547 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:52:33:0,52,954 +20 10016548 . A . . END=10016552 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:33:0,90,1350 +20 10016553 . A . . END=10016557 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:36:0,99,1485 +20 10016558 . G . . END=10016559 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:92:36:0,92,1089 +20 10016560 . T . . END=10016577 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:35:0,100,1067 +20 10016578 . T . . END=10016579 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:96:38:0,96,1440 +20 10016580 . G . . END=10016600 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,99,1071 +20 10016601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:94:38:0,94,1090 +20 10016602 . G . . END=10016607 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:35:0,102,1530 +20 10016608 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:89:38:0,89,1140 +20 10016609 . G . . END=10016624 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:36:0,102,1120 +20 10016625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:94:37:0,94,1120 +20 10016626 . G . . END=10016686 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:42:99:35:0,99,1133 +20 10016687 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:90:40:0,90,1180 +20 10016688 . C . . END=10016703 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:41:99:36:0,99,1485 +20 10016704 . T . . END=10016711 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:34:0,93,1123 +20 10016712 . C . . END=10016725 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:33:0,99,996 +20 10016726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:90:37:0,90,1065 +20 10016727 . G . . END=10016757 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,101,1110 +20 10016758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:87:40:0,87,1161 +20 10016759 . G . . END=10016785 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:36:0,99,1123 +20 10016786 . C . . END=10016789 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:90:37:0,90,1350 +20 10016790 . G . . END=10016797 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:87:30:0,87,1305 +20 10016798 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:32:0,90,1350 +20 10016799 . G . . END=10016800 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:30:87:29:0,87,900 +20 10016801 . C . . END=10016802 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:90:30:0,90,919 +20 10016803 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:29:87:29:0,87,911 +20 10016804 . T . . END=10016808 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:32:0,93,990 +20 10016809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:34:0,87,993 +20 10016810 . G . . END=10016823 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:92:31:0,92,903 +20 10016824 . C . . END=10016827 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:99:33:0,99,988 +20 10016828 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:80:32:0,80,952 +20 10016829 . G . . END=10016840 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:33:0,99,988 +20 10016841 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:94:38:0,94,1126 +20 10016842 . G . . END=10016862 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,99,1118 +20 10016863 . G . . END=10016869 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:34:0,90,1350 +20 10016870 . C . . END=10016871 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:87:34:0,87,1305 +20 10016872 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:68:34:0,68,1017 +20 10016873 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1305 +20 10016874 . T . . END=10016876 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:34:0,90,1067 +20 10016877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:34:0,87,1305 +20 10016878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:76:33:0,76,970 +20 10016879 . T . . END=10016890 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:81:31:0,81,1215 +20 10016891 . A . . END=10016898 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:32:0,90,1040 +20 10016899 . T . . END=10016901 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:99:33:0,99,1089 +20 10016902 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:35:0,90,1074 +20 10016903 . A . . END=10017078 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:56:99:35:0,99,1145 +20 10017079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:87:57:0,87,1738 ./.:56:99:35:0,99,1145 +20 10017080 . A . . END=10017228 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:56:99:35:0,99,1145 +20 10017229 . C . . END=10017232 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:96:36:0,96,1440 +20 10017233 . T . . END=10017239 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:99:36:0,99,1485 +20 10017240 . A . . END=10017246 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:93:33:0,93,1395 +20 10017247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:88:33:0,88,996 +20 10017248 . G . . END=10017261 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:90:31:0,90,1350 +20 10017262 . G . . END=10017265 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:84:31:0,84,1260 +20 10017266 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:74:30:0,74,890 +20 10017267 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:84:30:0,84,1260 +20 10017268 . T . . END=10017273 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:78:30:0,78,910 +20 10017274 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:81:30:0,81,1215 +20 10017275 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:79:30:0,79,935 +20 10017276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:29:81:29:0,81,1215 +20 10017277 . G . . END=10017278 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:78:29:0,78,1170 +20 10017279 . C . . END=10017284 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:81:29:0,81,1215 +20 10017285 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:50:31:0,50,821 +20 10017286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:80:32:0,80,950 +20 10017287 . C . . END=10017288 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10017289 . A . . END=10017292 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:87:31:0,87,1305 +20 10017293 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:90:32:0,90,1350 +20 10017294 . A . . END=10017295 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:87:31:0,87,1305 +20 10017296 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:56:32:0,56,894 +20 10017297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10017298 . T . . END=10017300 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:84:30:0,84,1260 +20 10017301 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:75:31:0,75,910 +20 10017302 . C . . END=10017303 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:87:31:0,87,1305 +20 10017304 . A . . END=10017306 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:90:32:0,90,1350 +20 10017307 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:84:32:0,84,987 +20 10017308 . G . . END=10017309 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10017310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:75:33:0,75,978 +20 10017311 . G . . END=10017322 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10017323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:88:33:0,88,1014 +20 10017324 . T . . END=10017327 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:90:33:0,90,1350 +20 10017328 . A . . END=10017330 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:87:33:0,87,1305 +20 10017331 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:90:34:0,90,1350 +20 10017332 . A . . END=10017334 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:84:33:0,84,1001 +20 10017335 . C . . END=10017338 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:90:33:0,90,1350 +20 10017339 . A . . END=10017340 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:87:33:0,87,1305 +20 10017341 . T . . END=10017345 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:93:35:0,93,1395 +20 10017346 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:88:35:0,88,1030 +20 10017347 . A . . END=10017358 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:92:31:0,92,959 +20 10017359 . G . . END=10017361 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,982 +20 10017362 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:96:32:0,96,945 +20 10017363 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:82:31:0,82,895 +20 10017364 . C . . END=10017367 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,980 +20 10017368 . T . . END=10017372 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:92:33:0,92,1019 +20 10017373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:67:33:0,67,904 +20 10017374 . C . . END=10017376 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:96:34:0,96,1440 +20 10017377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:85:34:0,85,945 +20 10017378 . T . . END=10017380 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:96:32:0,96,940 +20 10017381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:66:34:0,66,925 +20 10017382 . C . . END=10017388 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,922 +20 10017389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:80:32:0,80,916 +20 10017390 . T . . END=10017393 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:36:0,105,1575 +20 10017394 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:92:37:0,92,1077 +20 10017395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:37:0,108,1620 +20 10017396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:98:38:0,98,1104 +20 10017397 . G . . END=10017426 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:99:36:0,99,1127 +20 10017427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:93:31:0,93,944 +20 10017428 . T . . END=10017454 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:99:36:0,102,1096 +20 10017455 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:91:36:0,91,1024 +20 10017456 . C . . END=10017457 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:99:35:0,105,1048 +20 10017458 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:82:37:0,82,1015 +20 10017459 . C . . END=10017473 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:35:0,99,1069 +20 10017474 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:83:34:0,83,946 +20 10017475 . G . . END=10017478 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:90:34:0,90,1350 +20 10017479 . G . . END=10017488 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:84:30:0,84,1260 +20 10017489 . G . . END=10017497 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:78:29:0,78,1170 +20 10017498 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:29:81:29:0,81,1215 +20 10017499 . G . . END=10017504 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:27:72:26:0,72,1080 +20 10017505 . G . . END=10017519 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:24:63:22:0,63,649 +20 10017520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:64:51:0,64,1772 ./.:24:63:22:0,63,649 +20 10017521 . C . . END=10017528 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:24:63:22:0,63,649 +20 10017529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:22:0,57,855 +20 10017530 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:45:22:0,45,597 +20 10017531 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:21:0,57,855 +20 10017532 . T . . END=10017535 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:54:21:0,54,810 +20 10017536 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:48:21:0,48,720 +20 10017537 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:51:22:0,51,765 +20 10017538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:54:22:0,54,810 +20 10017539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:52:21:0,52,608 +20 10017540 . C . . END=10017542 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:51:20:0,51,765 +20 10017543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:49:20:0,49,563 +20 10017544 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:22:0,57,855 +20 10017545 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:52:22:0,52,651 +20 10017546 . A . . END=10017549 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:19:0,57,598 +20 10017550 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:33:19:0,33,419 +20 10017551 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:56:19:0,56,530 +20 10017552 . T . . END=10017553 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:60:20:0,60,591 +20 10017554 . G . . END=10017560 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:20:0,57,855 +20 10017561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:55:22:0,55,677 +20 10017562 . A . . END=10017563 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:21:0,57,855 +20 10017564 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:41:19:0,41,557 +20 10017565 . C . . END=10017566 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:54:19:0,54,810 +20 10017567 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:20:0,57,855 +20 10017568 . G . . END=10017572 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:60:20:0,60,637 +20 10017573 . C . . END=10017576 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:19:0,57,610 +20 10017577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,592 +20 10017578 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:20:0,57,855 +20 10017579 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:54:20:0,54,810 +20 10017580 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:36:20:0,36,531 +20 10017581 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,621 +20 10017582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017583 . G . . END=10017585 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:48:19:0,48,720 +20 10017586 . T . . END=10017587 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017588 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:47:20:0,47,617 +20 10017589 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:45:19:0,45,675 +20 10017590 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,720 +20 10017591 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:46:20:0,46,566 +20 10017593 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:39:20:0,39,587 +20 10017594 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:54:20:0,54,810 +20 10017595 . G . . END=10017600 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:60:20:0,60,620 +20 10017601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:49:20:0,49,537 +20 10017602 . C . . END=10017604 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:63:21:0,63,632 +20 10017605 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:23:58:23:0,58,691 +20 10017606 . A . . END=10017607 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:75:25:0,75,792 +20 10017608 . A . . END=10017609 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:81:28:0,81,1215 +20 10017610 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:66:28:0,66,841 +20 10017611 . A . . END=10017612 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:84:28:0,84,873 +20 10017613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:78:26:0,78,819 +20 10017614 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:60:26:0,60,775 +20 10017615 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:29:74:29:0,74,852 +20 10017616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:29:87:29:0,87,889 +20 10017617 . A . . END=10017618 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:30:90:30:0,90,951 +20 10017619 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:30:89:30:0,89,910 +20 10017620 . A . . END=10017631 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:90:30:0,90,967 +20 10017632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:35:75:35:0,75,994 +20 10017633 . G . . END=10017634 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:99:35:0,99,1485 +20 10017635 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:90:34:0,90,1013 +20 10017636 . G . . END=10017668 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:38:99:34:0,102,1059 +20 10017669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:43:91:43:0,91,1279 +20 10017670 . G . . END=10017752 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:45:99:37:0,105,1250 +20 10017753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:92:40:0,92,1163 +20 10017754 . G . . END=10017755 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:99:40:0,99,1485 +20 10017756 . T . . END=10017762 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:37:93:36:0,93,1395 +20 10017763 . T . . END=10017775 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:99:34:0,99,1148 +20 10017776 . A G, . . BaseQRankSum=-2.641e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=0.038 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:45:0,114,1710,114,1710,1710 ./.:19,18,0:37:99:.:441,0,519,498,573,1072:11,8,10,8 +20 10017777 . G . . END=10017954 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:47:99:38:0,100,1204 +20 10017955 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:42:97:42:0,97,1211 +20 10017956 . A . . END=10017968 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:42:99:40:0,111,1665 +20 10017969 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:95:40:0,95,1207 +20 10017970 . A . . END=10017971 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:41:99:40:0,107,1218 +20 10017972 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:94:40:0,94,1221 +20 10017973 . C . . END=10017988 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:41:99:39:0,99,1177 +20 10017989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:96:36:0,96,1042 +20 10017990 . C . . END=10017991 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:39:89:39:0,89,1173 +20 10017992 . C . . END=10017995 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:93:31:0,93,972 +20 10017996 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:79:32:0,79,971 +20 10017997 . C . . END=10017998 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:93:33:0,93,1395 +20 10017999 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:70:34:0,70,1002 +20 10018000 . A . . END=10018009 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:33:83:32:0,83,998 +20 10018010 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:32:0,90,1350 +20 10018011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:76:31:0,76,954 +20 10018012 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:93:31:0,93,1023 +20 10018013 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:84:32:0,84,963 +20 10018014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:32:0,90,1350 +20 10018015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:82:31:0,82,935 +20 10018016 . C . . END=10018018 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:31:0,90,1350 +20 10018019 . C . . END=10018037 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:35:99:33:0,99,1053 +20 10018038 . C . . END=10018049 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:37:90:35:0,90,1085 +20 10018050 . G . . END=10018070 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:39:99:36:0,100,1118 +20 10018071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:92:40:0,92,1204 +20 10018072 . T . . END=10018157 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:47:99:42:0,100,1365 +20 10018158 . G C, . . BaseQRankSum=5.21;DP=142;ExcessHet=3.01;MQRankSum=1.12;RAW_MQandDP=508969,142;ReadPosRankSum=1.18 GT:AD:DP:GQ:PL:SB ./.:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 ./.:0,53,0:53:99:1660,159,0,1660,159,1660:0,0,27,26 +20 10018159 . C . . END=10018214 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:52:99:48:0,105,1381 +20 10018215 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:51:80:51:0,80,1405 +20 10018216 . C . . END=10018301 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:48:99:44:0,103,1413 +20 10018302 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:45:92:45:0,92,1341 +20 10018303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:99:43:0,120,1800 +20 10018304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:44:92:44:0,92,1346 +20 10018305 . T . . END=10018321 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:99:40:0,99,1220 +20 10018322 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:97:43:0,97,1309 +20 10018323 . A . . END=10018455 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:45:99:40:0,107,1255 +20 10018456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:97:43:0,97,1265 +20 10018457 . T . . END=10018504 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:48:99:43:0,119,1324 +20 10018505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:44:97:44:0,97,1276 +20 10018506 . T . . END=10018554 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:53:99:44:0,120,1800 +20 10018555 . G A, . . BaseQRankSum=0.301;ClippingRankSum=0.00;DP=137;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=493200,137;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL:SB ./.:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 ./.:33,22,0:55:99:490,0,809,589,874,1463:19,14,11,11 +20 10018556 . C . . END=10018699 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:55:99:46:0,115,1531 +20 10018700 . T C, . . BaseQRankSum=-2.659e+00;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=0.244 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:83:99:70:0,120,1800,120,1800,1800 ./.:23,23,0:46:99:.:560,0,626,629,695,1325:7,16,12,11 +20 10018701 . A . . END=10018873 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:54:99:46:0,115,1455 +20 10018874 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:49:74:49:0,74,1298 +20 10018875 . T . . END=10018923 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:47:99:41:0,101,1286 +20 10018924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:98:44:0,98,1327 +20 10018925 . A . . END=10018931 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:42:0,111,1318 +20 10018932 . T . . END=10018933 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:42:71:41:0,71,1207 +20 10018934 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:43:0,110,1324 +20 10018935 . A . . END=10018936 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:95:43:0,95,1230 +20 10018937 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:43:0,120,1800 +20 10018938 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:82:43:0,82,1207 +20 10018939 . G . . END=10019050 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:99:39:0,101,1233 +20 10019051 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:98:44:0,98,1364 +20 10019052 . G . . END=10019092 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:45:99:41:0,117,1347 +20 10019093 . A G, . . BaseQRankSum=1.71;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=1.07;RAW_MQandDP=422041,118;ReadPosRankSum=-2.520e-01 GT:AD:DP:GQ:PL:SB ./.:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 ./.:2,46,0:48:93:1332,93,0,1338,137,1381:1,1,25,21 +20 10019094 . C . . END=10019229 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:47:99:39:0,102,1224 +20 10019230 . A . . END=10019235 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:93:36:0,93,1395 +20 10019236 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:79:37:0,79,1062 +20 10019237 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:86:37:0,86,1106 +20 10019238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:38:0,99,1485 +20 10019239 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:96:37:0,96,1440 +20 10019240 . G . . END=10019241 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:36:0,99,1485 +20 10019242 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:96:36:0,96,1097 +20 10019243 . A . . END=10019244 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,99,1485 +20 10019245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:97:38:0,97,1125 +20 10019246 . A . . END=10019255 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:39:0,100,1147 +20 10019256 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:90:39:0,90,1156 +20 10019257 . C . . END=10019426 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:47:99:39:0,104,1201 +20 10019427 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:88:42:0,88,1127 +20 10019428 . C . . END=10019439 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:39:0,102,1242 +20 10019440 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:92:39:0,92,1196 +20 10019441 . A . . END=10019448 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,102,1530 +20 10019449 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:77:36:0,77,1107 +20 10019450 . C . . END=10019452 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:36:0,99,1485 +20 10019453 . C . . END=10019462 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:93:35:0,93,1395 +20 10019463 . G . . END=10019465 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:99:34:0,99,1177 +20 10019466 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:95:37:0,95,1110 +20 10019467 . A . . END=10019469 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,108,1620 +20 10019470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:90:35:0,90,1082 +20 10019471 . G . . END=10019486 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:99:35:0,104,1074 +20 10019487 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:82:39:0,82,1137 +20 10019488 . G . . END=10019490 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:40:0,111,1665 +20 10019491 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:41:97:41:0,97,1197 +20 10019492 . T . . END=10019543 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:37:0,101,1111 +20 10019544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:96:38:0,96,1098 +20 10019545 . T . . END=10019549 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,102,1530 +20 10019550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:92:38:0,92,1111 +20 10019551 . A . . END=10019557 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:99:36:0,102,1530 +20 10019558 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:87:38:0,87,1114 +20 10019559 . A . . END=10019614 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:99:35:0,99,1094 +20 10019615 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:84:36:0,84,1053 +20 10019616 . A . . END=10019758 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:36:0,99,1100 +20 10019759 . T . . END=10019761 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:96:37:0,96,1440 +20 10019762 . A . . END=10019768 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:37:0,99,1485 +20 10019769 . T . . END=10019774 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:96:33:0,96,1440 +20 10019775 . A . . END=10019776 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10019777 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:72:34:0,72,1031 +20 10019778 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:96:34:0,96,1440 +20 10019779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:85:32:0,85,957 +20 10019780 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10019781 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:81:33:0,81,976 +20 10019782 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10019783 . C . . END=10019784 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:87:33:0,87,1305 +20 10019785 . A . . END=10019786 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:34:0,90,1350 +20 10019787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:87:33:0,87,1305 +20 10019788 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10019789 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:87:34:0,87,1305 +20 10019790 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:90:35:0,90,1350 +20 10019791 . T . . END=10019800 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:81:31:0,81,1215 +20 10019801 . T . . END=10019808 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:78:29:0,78,1170 +20 10019809 . T . . END=10019812 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:81:32:0,81,1215 +20 10019813 . T . . END=10019815 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:78:31:0,78,1170 +20 10019816 . A . . END=10019821 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:81:29:0,81,1215 +20 10019822 . A . . END=10019824 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:90:30:0,90,903 +20 10019825 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:87:30:0,87,1305 +20 10019826 . T . . END=10019830 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:31:0,90,1350 +20 10019831 . C . . END=10019832 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10019833 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:80:33:0,80,958 +20 10019834 . T . . END=10019840 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10019841 . G . . END=10019854 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:34:0,99,1068 +20 10019855 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:41:95:41:0,95,1139 +20 10019856 . A . . END=10019893 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:43:99:41:0,110,1235 +20 10019894 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:43:86:43:0,86,1269 +20 10019895 . A . . END=10019926 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:44:99:43:0,115,1304 +20 10019927 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:95:42:0,95,1251 +20 10019928 . C . . END=10019967 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:39:0,99,1215 +20 10019968 . C . . END=10019973 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:90:35:0,90,1350 +20 10019974 . A . . END=10019976 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:87:35:0,87,1305 +20 10019977 . A . . END=10019981 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:34:0,90,1350 +20 10019982 . A . . END=10019998 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:81:28:0,81,1215 +20 10019999 . C . . END=10020002 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:78:27:0,78,1170 +20 10020003 . A . . END=10020006 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10020007 . A . . END=10020010 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:75:27:0,75,892 +20 10020011 . T . . END=10020017 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10020018 . T . . END=10020021 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:75:28:0,75,872 +20 10020022 . A . . END=10020025 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:81:29:0,81,1215 +20 10020026 . G . . END=10020030 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10020031 . C . . END=10020041 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:99:33:0,99,1045 +20 10020042 . G . . END=10020056 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:33:0,90,1350 +20 10020057 . T . . END=10020062 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10020063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:76:36:0,76,1075 +20 10020064 . C . . END=10020228 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:46:99:35:0,99,1061 +20 10020229 . G A, . . BaseQRankSum=5.79;ClippingRankSum=0.00;DP=127;ExcessHet=3.01;MQRankSum=0.104;RAW_MQandDP=452210,127;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL:SB ./.:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 ./.:30,15,0:45:99:368,0,693,456,738,1194:15,15,9,6 +20 10020230 . T . . END=10020324 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:43:99:38:0,99,1202 +20 10020325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:82:38:0,82,1125 +20 10020326 . A . . END=10020337 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:90:32:0,90,1350 +20 10020338 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:79:32:0,79,941 +20 10020339 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020340 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:82:31:0,82,923 +20 10020341 . T . . END=10020343 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:32:0,90,1350 +20 10020344 . C . . END=10020346 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10020347 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:56:35:0,56,973 +20 10020348 . G . . END=10020349 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:35:0,102,1530 +20 10020350 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:90:35:0,90,1034 +20 10020351 . C . . END=10020412 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:35:0,99,1067 +20 10020413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:98:39:0,98,1205 +20 10020414 . A . . END=10020428 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:35:0,99,1158 +20 10020429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:81:33:0,81,990 +20 10020430 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:36:0,99,1485 +20 10020431 . A . . END=10020433 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10020434 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:99:38:0,99,1485 +20 10020435 . A . . END=10020441 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:90:34:0,90,1350 +20 10020442 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:66:34:0,66,978 +20 10020443 . C . . END=10020450 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:31:0,90,1350 +20 10020451 . G . . END=10020454 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:87:29:0,87,953 +20 10020455 . A . . END=10020464 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:31:0,90,946 +20 10020465 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:85:32:0,85,945 +20 10020466 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:32:0,90,1350 +20 10020467 . A . . END=10020469 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:84:32:0,84,1260 +20 10020470 . T . . END=10020471 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:34:0,90,1350 +20 10020472 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:86:35:0,86,1051 +20 10020473 . C . . END=10020475 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:33:0,93,1395 +20 10020476 . A . . END=10020487 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:34:0,99,1086 +20 10020488 . A . . END=10020491 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10020492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:89:36:0,89,1087 +20 10020493 . A . . END=10020494 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:91:34:0,91,1013 +20 10020495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:88:33:0,88,997 +20 10020496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10020497 . T . . END=10020502 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:33:0,99,1007 +20 10020503 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:75:34:0,75,1010 +20 10020504 . T . . END=10020505 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:85:36:0,85,1039 +20 10020506 . A . . END=10020521 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:90:33:0,90,1350 +20 10020522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:73:36:0,73,1022 +20 10020523 . T . . END=10020524 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1440 +20 10020525 . G . . END=10020526 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:36:0,102,1530 +20 10020527 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:92:36:0,92,1060 +20 10020528 . T . . END=10020532 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:33:0,99,1072 +20 10020533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:34:0,90,1034 +20 10020534 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020535 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:91:34:0,91,1017 +20 10020536 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020537 . C . . END=10020540 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:32:0,96,979 +20 10020541 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:82:33:0,82,897 +20 10020542 . C . . END=10020546 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:90:33:0,90,1012 +20 10020547 . G . . END=10020548 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:85:34:0,85,972 +20 10020549 . A . . END=10020559 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:91:34:0,91,1038 +20 10020560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:79:31:0,79,931 +20 10020561 . A . . END=10020566 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:31:0,93,927 +20 10020567 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:54:32:0,54,883 +20 10020568 . C . . END=10020569 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:90:30:0,90,832 +20 10020570 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:85:33:0,85,985 +20 10020571 . T . . END=10020576 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:32:0,93,943 +20 10020577 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:81:32:0,81,908 +20 10020578 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:33:0,93,1395 +20 10020579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:79:32:0,79,884 +20 10020580 . T . . END=10020581 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020582 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:88:33:0,88,983 +20 10020583 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:72:33:0,72,911 +20 10020584 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:96:32:0,96,961 +20 10020585 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020586 . T . . END=10020587 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:80:33:0,80,937 +20 10020588 . A . . END=10020589 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10020590 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:99:33:0,99,1003 +20 10020591 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,977 +20 10020592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10020593 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:77:36:0,77,966 +20 10020594 . A . . END=10020595 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:36:0,102,1530 +20 10020596 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:93:36:0,93,1395 +20 10020597 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,952 +20 10020598 . A . . END=10020601 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:93:35:0,93,1395 +20 10020602 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:70:35:0,70,915 +20 10020603 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,1305 +20 10020604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:61:35:0,61,923 +20 10020605 . A . . END=10020614 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:80:32:0,80,908 +20 10020615 . G . . END=10020618 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:71:30:0,71,866 +20 10020619 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:39:28:0,39,725 +20 10020620 . T . . END=10020634 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:75:26:0,75,803 +20 10020635 . T . . END=10020638 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:81:27:0,81,841 +20 10020639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:68:27:0,68,842 +20 10020640 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:78:27:0,78,1170 +20 10020641 . A . . END=10020652 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:81:28:0,81,846 +20 10020653 . T . . END=10020667 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:72:27:0,72,837 +20 10020668 . G . . END=10020669 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:64:27:0,64,762 +20 10020670 . A . . END=10020674 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:72:27:0,72,1080 +20 10020675 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:58:28:0,58,793 +20 10020676 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:26:77:26:0,77,761 +20 10020677 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:26:46:26:0,46,672 +20 10020678 . A . . END=10020681 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:75:26:0,75,1125 +20 10020682 . A . . END=10020696 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:81:29:0,81,1215 +20 10020697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:78:32:0,78,954 +20 10020698 . T . . END=10020699 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:84:31:0,84,1260 +20 10020700 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:74:30:0,74,907 +20 10020701 . C . . END=10020702 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:84:28:0,84,917 +20 10020703 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:64:27:0,64,811 +20 10020704 . C . . END=10020707 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:81:28:0,81,1215 +20 10020708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:53:28:0,53,852 +20 10020709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:68:28:0,68,857 +20 10020710 . C . . END=10020714 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:81:27:0,81,903 +20 10020715 . G . . END=10020717 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:72:26:0,72,841 +20 10020718 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:58:30:0,58,917 +20 10020719 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:74:30:0,74,931 +20 10020720 . A . . END=10020721 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:93:31:0,93,982 +20 10020722 . G . . END=10020723 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:78:32:0,78,935 +20 10020724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:80:32:0,80,981 +20 10020725 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:90:31:0,90,1350 +20 10020726 . A . . END=10020728 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:87:32:0,87,1305 +20 10020729 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:61:32:0,61,932 +20 10020730 . G . . END=10020742 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:81:30:0,81,1215 +20 10020743 . T . . END=10020744 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:90:32:0,90,1350 +20 10020745 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:64:31:0,64,914 +20 10020746 . G . . END=10020747 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020748 . A . . END=10020749 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:83:32:0,83,961 +20 10020750 . A . . END=10020751 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:31:0,90,1350 +20 10020752 . C . . END=10020753 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:81:32:0,81,991 +20 10020754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:77:35:0,77,985 +20 10020755 . A . . END=10020757 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:96:35:0,96,1440 +20 10020758 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,105,1575 +20 10020759 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1107 +20 10020760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,102,1530 +20 10020761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1104 +20 10020762 . A . . END=10020789 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:36:0,105,1134 +20 10020790 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:98:40:0,98,1142 +20 10020791 . A . . END=10020815 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:38:0,102,1147 +20 10020816 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:41:96:41:0,96,1176 +20 10020817 . C . . END=10020818 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:40:0,117,1755 +20 10020819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:96:39:0,96,1150 +20 10020820 . C . . END=10020835 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:34:0,102,1075 +20 10020836 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1082 +20 10020837 . A . . END=10020845 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:35:0,102,1098 +20 10020846 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1051 +20 10020847 . A . . END=10020851 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:36:0,108,1119 +20 10020852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:80:36:0,80,1067 +20 10020853 . C . . END=10020854 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,111,1161 +20 10020855 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:94:35:0,94,1091 +20 10020856 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,111,1153 +20 10020857 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:97:37:0,97,1119 +20 10020858 . T . . END=10020887 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:99:33:0,99,999 +20 10020888 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:42:98:42:0,98,1100 +20 10020889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:41:99:38:0,102,1123 +20 10020890 . A . . END=10020896 GT:DP:GQ:MIN_DP:PL ./.:42:93:40:0,93,1395 ./.:41:99:38:0,102,1123 +20 10020897 . C . . END=10020900 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:41:99:38:0,102,1123 +20 10020901 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:38:90:38:0,90,1115 +20 10020902 . C . . END=10020905 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:39:99:38:0,99,1485 +20 10020906 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:38:85:38:0,85,1131 +20 10020907 . A . . END=10020917 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:37:93:33:0,93,1395 +20 10020918 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:33:86:33:0,86,999 +20 10020919 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:95:45:0,95,1765 ./.:33:93:33:0,93,1395 +20 10020920 . T . . END=10020931 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:84:30:0,84,1260 +20 10020932 . G . . END=10020935 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:31:0,90,1350 +20 10020936 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:74:32:0,74,939 +20 10020937 . A . . END=10020940 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:96:33:0,96,1440 +20 10020941 . C . . END=10021017 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:34:0,99,1113 +20 10021018 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:87:41:0,87,1078 +20 10021019 . T . . END=10021024 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:40:0,102,1530 +20 10021025 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:93:42:0,93,1222 +20 10021026 . A . . END=10021028 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:39:0,101,1174 +20 10021029 . A . . END=10021030 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:94:38:0,94,1108 +20 10021031 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:87:37:0,87,1087 +20 10021032 . A . . END=10021033 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,99,1485 +20 10021034 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:91:36:0,91,1055 +20 10021035 . A . . END=10021036 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,99,1078 +20 10021037 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:95:37:0,95,1095 +20 10021038 . C . . END=10021040 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:34:0,100,1058 +20 10021041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:88:34:0,88,1047 +20 10021042 . T . . END=10021043 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10021044 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:91:34:0,91,1019 +20 10021045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:86:34:0,86,1027 +20 10021046 . T . . END=10021047 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10021048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,1018 +20 10021049 . C . . END=10021051 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:96:35:0,96,1440 +20 10021052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10021053 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:89:35:0,89,1059 +20 10021054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:91:34:0,91,1053 +20 10021055 . G . . END=10021056 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:86:34:0,86,1002 +20 10021057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:70:36:0,70,1007 +20 10021058 . T . . END=10021078 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:36:0,99,1234 +20 10021079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:98:38:0,98,1138 +20 10021080 . C . . END=10021082 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,100,1121 +20 10021083 . G . . END=10021085 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:91:35:0,91,1080 +20 10021086 . C . . END=10021088 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:87:36:0,87,1305 +20 10021089 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:90:37:0,90,1350 +20 10021090 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:87:37:0,87,1047 +20 10021091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:90:35:0,90,1350 +20 10021092 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:86:35:0,86,946 +20 10021093 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10021094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:69:34:0,69,1008 +20 10021095 . A . . END=10021101 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:32:0,90,1350 +20 10021102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10021103 . T . . END=10021106 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:93:35:0,93,1395 +20 10021107 . A . . END=10021113 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10021114 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:89:35:0,89,1066 +20 10021115 . T . . END=10021116 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:38:0,111,1665 +20 10021117 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:84:39:0,84,1127 +20 10021118 . A . . END=10021256 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:35:0,99,1103 +20 10021257 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:89:39:0,89,1051 +20 10021258 . T . . END=10021294 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:36:0,99,1115 +20 10021295 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:98:38:0,98,1138 +20 10021296 . C . . END=10021326 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:36:0,99,1128 +20 10021327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:96:36:0,96,1440 +20 10021328 . T . . END=10021333 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:38:0,99,1485 +20 10021334 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:93:41:0,93,1227 +20 10021335 . A . . END=10021492 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:36:0,102,1161 +20 10021493 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:94:37:0,94,1102 +20 10021494 . T . . END=10021507 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:37:0,105,1163 +20 10021508 . T . . END=10021512 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:96:38:0,96,1440 +20 10021513 . T . . END=10021515 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:40:0,99,1485 +20 10021516 . T . . END=10021517 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:93:37:0,93,1156 +20 10021518 . T . . END=10021523 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:33:0,99,1017 +20 10021524 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10021525 . T . . END=10021526 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:35:0,99,1485 +20 10021527 . T . . END=10021534 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:94:33:0,94,1092 +20 10021535 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:83:33:0,83,965 +20 10021536 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10021537 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:96:32:0,96,990 +20 10021538 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:99:33:0,99,1052 +20 10021539 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:86:34:0,86,972 +20 10021540 . T . . END=10021544 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,102,993 +20 10021545 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:61:37:0,61,979 +20 10021546 . C . . END=10021551 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:37:0,106,1172 +20 10021552 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:85:39:0,85,1050 +20 10021553 . T . . END=10021555 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:38:0,108,1620 +20 10021556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:96:38:0,96,1107 +20 10021557 . T . . END=10021569 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:40:0,111,1665 +20 10021570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:89:42:0,89,1080 +20 10021571 . A . . END=10021625 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:40:0,101,1068 +20 10021626 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:47:86:47:0,86,1215 +20 10021627 . T . . END=10021642 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:41:0,103,1263 +20 10021643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:92:42:0,92,1196 +20 10021644 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:43:0,120,1800 +20 10021645 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:89:41:0,89,1148 +20 10021646 . T . . END=10021684 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:42:0,115,1387 +20 10021685 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:82:49:0,82,1272 +20 10021686 . A . . END=10021945 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:40:0,99,1218 +20 10021946 . T A, . . BaseQRankSum=-1.906e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=2.22 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:46:0,105,1721,105,1721,1721 ./.:21,26,0:47:99:.:666,0,522,729,600,1329:10,11,12,14 +20 10021947 . A . . END=10021989 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:99:43:0,101,1413 +20 10021990 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:95:42:0,95,1236 +20 10021991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:77:41:0,77,1138 +20 10021992 . C . . END=10022008 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:38:0,107,1286 +20 10022009 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:44:97:44:0,97,1182 +20 10022010 . A . . END=10022279 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:42:0,101,1311 +20 10022280 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:93:49:0,93,1422 +20 10022281 . T . . END=10022298 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:49:99:48:0,111,1370 +20 10022299 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:98:50:0,98,1437 +20 10022300 . A . . END=10022337 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:48:99:38:0,108,1620 +20 10022338 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:80:38:0,80,1122 +20 10022339 . T . . END=10022340 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:36:0,105,1575 +20 10022341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:97:37:0,97,1107 +20 10022342 . C . . END=10022345 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:38:0,105,1575 +20 10022346 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:64:38:0,64,1050 +20 10022347 . T . . END=10022352 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:39:0,106,1160 +20 10022353 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:89:39:0,89,1167 +20 10022354 . C . . END=10022367 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:38:0,99,1485 +20 10022368 . G . . END=10022369 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:92:37:0,92,1054 +20 10022370 . T . . END=10022373 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:36:0,99,1485 +20 10022374 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:96:38:0,96,1062 +20 10022375 . T . . END=10022490 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:38:0,105,1137 +20 10022491 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:46:92:46:0,92,1336 +20 10022492 . C . . END=10022562 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:44:99:40:0,102,1281 +20 10022563 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:91:41:0,91,1194 +20 10022564 . A . . END=10022604 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:36:0,99,1143 +20 10022605 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:98:38:0,98,1167 +20 10022606 . G . . END=10022624 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:39:0,111,1147 +20 10022625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:93:41:0,93,1236 +20 10022626 . T . . END=10022631 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:42:0,117,1755 +20 10022632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:98:41:0,98,1268 +20 10022633 . A . . END=10022635 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,117,1196 +20 10022636 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:95:41:0,95,1224 +20 10022637 . T . . END=10022643 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:40:0,109,1319 +20 10022644 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:92:42:0,92,1215 +20 10022645 . A . . END=10022693 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:44:99:40:0,108,1176 +20 10022694 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:46:84:46:0,84,1246 +20 10022695 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:45:0,120,1800 +20 10022696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:78:43:0,78,1154 +20 10022697 . T . . END=10022771 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:47:99:44:0,107,1204 +20 10022772 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:51:93:51:0,93,1444 +20 10022773 . T . . END=10022956 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:39:0,104,1128 +20 10022957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:93:37:0,93,1111 +20 10022958 . G . . END=10022961 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,108,1620 +20 10022962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:92:42:0,92,1153 +20 10022963 . C . . END=10022971 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:42:99:41:0,110,1201 +20 10022972 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:93:41:0,93,1258 +20 10022973 . G . . END=10022974 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,116,1130 +20 10022975 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:87:40:0,87,1134 +20 10022976 . G . . END=10022977 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:99:40:0,114,1199 +20 10022978 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:90:40:0,90,1173 +20 10022979 . T . . END=10023021 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:99:40:0,107,1244 +20 10023022 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:43:95:43:0,95,1209 +20 10023023 . T . . END=10023042 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:41:99:39:0,99,1187 +20 10023043 . T . . END=10023045 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:90:35:0,90,1072 +20 10023046 . A . . END=10023053 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:33:0,99,1009 +20 10023054 . C . . END=10023060 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:90:32:0,90,1350 +20 10023061 . A . . END=10023063 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:87:34:0,87,1305 +20 10023064 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:34:0,90,1350 +20 10023065 . C . . END=10023066 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:87:32:0,87,1305 +20 10023067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:93:34:0,93,1395 +20 10023068 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:82:34:0,82,1017 +20 10023069 . T . . END=10023072 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:93:33:0,93,1395 +20 10023073 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:61:34:0,61,909 +20 10023074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:93:34:0,93,1395 +20 10023075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:85:32:0,85,902 +20 10023076 . C . . END=10023083 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:33:0,90,1049 +20 10023084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:87:33:0,87,981 +20 10023085 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:71:33:0,71,908 +20 10023086 . T . . END=10023088 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:93:33:0,93,1395 +20 10023089 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:58:34:0,58,912 +20 10023090 . C . . END=10023095 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:32:0,90,988 +20 10023096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:78:32:0,78,908 +20 10023097 . C . . END=10023100 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:32:0,90,1350 +20 10023101 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:86:33:0,86,935 +20 10023102 . T . . END=10023108 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:90:34:0,90,1350 +20 10023109 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:78:32:0,78,885 +20 10023110 . A . . END=10023117 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:90:32:0,90,934 +20 10023118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:42:34:0,42,919 +20 10023119 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10023120 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:96:35:0,96,1440 +20 10023121 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,980 +20 10023122 . G . . END=10023124 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:37:0,99,1485 +20 10023125 . T . . END=10023134 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:90:34:0,90,1350 +20 10023135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:82:33:0,82,953 +20 10023136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:78:32:0,78,877 +20 10023137 . C . . END=10023140 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:93:32:0,93,963 +20 10023141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:65:33:0,65,881 +20 10023142 . T . . END=10023144 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,102,1023 +20 10023145 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:79:32:0,79,932 +20 10023146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:96:36:0,96,1037 +20 10023147 . A . . END=10023152 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:33:0,99,991 +20 10023153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:92:36:0,92,1076 +20 10023154 . T . . END=10023160 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:99:35:0,102,1036 +20 10023161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:93:39:0,93,1155 +20 10023162 . T . . END=10023167 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:99:37:0,102,1079 +20 10023168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:40:96:40:0,96,1147 +20 10023169 . T . . END=10023219 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:99:40:0,99,1214 +20 10023220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:45:88:45:0,88,1301 +20 10023221 . T . . END=10023378 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:48:99:41:0,101,1249 +20 10023379 . T . . END=10023383 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:90:36:0,90,1350 +20 10023384 . T . . END=10023406 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:31:81:29:0,81,1215 +20 10023407 . G . . END=10023408 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:90:31:0,90,1350 +20 10023409 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:82:33:0,82,999 +20 10023410 . G . . END=10023412 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:90:33:0,90,1350 +20 10023413 . T . . END=10023416 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:34:0,99,1485 +20 10023417 . C . . END=10023422 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:96:33:0,96,1440 +20 10023423 . C . . END=10023429 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1027 +20 10023430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,1036 +20 10023431 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,102,1083 +20 10023432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:78:34:0,78,1065 +20 10023433 . C . . END=10023434 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:34:0,90,1065 +20 10023435 . C . . END=10023437 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10023438 . A . . END=10023441 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:96:33:0,96,1440 +20 10023442 . G A, . . BaseQRankSum=0.223;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=-5.460e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:46:0,105,1721,105,1721,1721 ./.:1,31,0:32:62:.:964,62,0,967,93,998:1,0,18,13 +20 10023443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:74:33:0,74,1026 +20 10023444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:96:34:0,96,1440 +20 10023445 . G . . END=10023446 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10023447 . C . . END=10023454 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:93:34:0,93,1395 +20 10023455 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:76:35:0,76,1076 +20 10023456 . T . . END=10023466 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10023467 . A . . END=10023470 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:94:35:0,94,1039 +20 10023471 . T . . END=10023472 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10023473 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:91:36:0,91,1097 +20 10023474 . G . . END=10023483 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,99,1020 +20 10023484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:87:35:0,87,1053 +20 10023485 . G . . END=10023488 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,99,1076 +20 10023489 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:70:34:0,70,1027 +20 10023490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10023491 . T . . END=10023493 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10023494 . C . . END=10023495 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:83:34:0,83,1030 +20 10023496 . A . . END=10023498 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:90:33:0,90,1350 +20 10023499 . A . . END=10023503 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:81:31:0,81,1215 +20 10023504 . G . . END=10023506 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:90:35:0,90,1350 +20 10023507 . T . . END=10023511 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:33:87:32:0,87,1305 +20 10023512 . A . . END=10023524 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:31:90:30:0,90,950 +20 10023525 . C . . END=10023526 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:33:0,99,1011 +20 10023527 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:32:96:32:0,96,1001 +20 10023528 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:84:34:0,84,926 +20 10023529 . G . . END=10023545 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:34:0,99,986 +20 10023546 . A . . END=10023548 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:93:38:0,93,1395 +20 10023549 . C . . END=10023555 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:84:35:0,84,1260 +20 10023556 . T . . END=10023560 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:36:93:33:0,93,1395 +20 10023561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10023562 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:34:85:34:0,85,1028 +20 10023563 . T . . END=10023571 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:35:99:35:0,105,1090 +20 10023572 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:37:96:37:0,96,1096 +20 10023573 . A . . END=10023603 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:38:99:36:0,102,1142 +20 10023604 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:39:97:39:0,97,1208 +20 10023605 . T . . END=10023688 GT:DP:GQ:MIN_DP:PL ./.:80:99:46:0,105,1721 ./.:50:99:39:0,102,1217 +20 10023689 . G A, . . BaseQRankSum=2.14;DP=119;ExcessHet=3.01;MQRankSum=1.35;RAW_MQandDP=285769,80;ReadPosRankSum=1.16 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:29,51,0:80:99:.:1881,0,946,1968,1099,3067:16,13,26,25 ./.:.:50:99:39:0,102,1217,102,1217,1217 +20 10023690 . G . . END=10023877 GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:50:99:39:0,102,1217 +20 10023878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:44:80:44:0,80,1273 +20 10023879 . A . . END=10024106 GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:55:99:43:0,104,1309 +20 10024107 . C T, . . BaseQRankSum=5.77;DP=138;ExcessHet=3.01;MQRankSum=-1.546e+00;RAW_MQandDP=303563,86;ReadPosRankSum=0.148 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:38,48,0:86:99:.:1723,0,1086,1837,1230,3068:21,17,28,20 ./.:.:52:96:52:0,96,1322,96,1322,1322 +20 10024108 . G . . END=10024151 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:48:99:44:0,107,1367 +20 10024152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:46:88:46:0,88,1315 +20 10024153 . T . . END=10024229 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:46:99:38:0,100,1106 +20 10024230 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:43:95:43:0,95,1181 +20 10024231 . A . . END=10024241 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:40:99:37:0,100,1135 +20 10024242 . G . . END=10024243 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:80:36:0,80,1010 +20 10024244 . T . . END=10024254 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:99:38:0,99,1121 +20 10024255 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:38:97:38:0,97,1172 +20 10024256 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:86:39:0,86,1127 +20 10024257 . A . . END=10024259 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:99:38:0,99,1485 +20 10024260 . G . . END=10024270 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:91:36:0,91,1058 +20 10024271 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:36:88:36:0,88,1111 +20 10024272 . T . . END=10024274 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:38:93:37:0,93,1395 +20 10024275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:36:84:36:0,84,1096 +20 10024276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:35:96:35:0,96,1440 +20 10024277 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:34:81:34:0,81,1012 +20 10024278 . T . . END=10024282 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:93:31:0,93,940 +20 10024283 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:0:62:0,0,1777 ./.:36:48:36:0,48,951 +20 10024284 . T . . END=10024287 GT:DP:GQ:MIN_DP:PL ./.:71:99:65:0,120,1800 ./.:39:81:37:0,81,1215 +20 10024288 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:0:71:0,0,1411 ./.:36:73:36:0,73,1048 +20 10024289 . T . . END=10024293 GT:DP:GQ:MIN_DP:PL ./.:72:99:70:0,120,1800 ./.:38:81:37:0,81,1131 +20 10024294 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:0:69:0,0,1358 ./.:35:37:35:0,37,903 +20 10024295 . T . . END=10024296 GT:DP:GQ:MIN_DP:PL ./.:68:99:67:0,120,1800 ./.:36:75:36:0,75,1125 +20 10024297 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:65:68:0,65,2188 ./.:36:75:36:0,75,1125 +20 10024298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:59:66:0,59,2080 ./.:36:75:36:0,75,1125 +20 10024299 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:0:62:0,0,1480 ./.:34:69:34:0,69,1035 +20 10024300 . CTT C,CT,CTTTT, . . BaseQRankSum=2.45;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=231195,77;ReadPosRankSum=-1.073e+00 GT:AD:DP:GQ:PL:SB ./.:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 ./.:7,0,5,0,0:12:65:65,85,180,0,95,80,85,180,95,180,85,180,95,180,180:7,0,1,4 +20 10024301 . T *, . . DP=77 GT:AD:DP:GQ:PL:SB ./.:3,3,0:18:1:122,91,231,161,257,347:1,2,11,4 ./.:7,5,0:12:65:65,0,80,85,95,180:7,0,1,4 +20 10024302 . T *, . . DP=86 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,3,0:18:1:.:122,91,231,161,257,347:1,2,11,4 ./.:.:36:0:36:0,0,684,0,684,684 +20 10024303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:57:67:0,57,855 ./.:33:33:30:0,33,495 +20 10024304 . T . . END=10024307 GT:DP:GQ:MIN_DP:PL ./.:69:63:68:0,63,945 ./.:33:33:30:0,33,495 +20 10024308 . T . . END=10024310 GT:DP:GQ:MIN_DP:PL ./.:70:78:70:0,78,1170 ./.:33:33:30:0,33,495 +20 10024311 . T . . END=10024313 GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:33:33:30:0,33,495 +20 10024314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:31:36:31:0,36,540 +20 10024315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:72:66:0,72,1080 ./.:29:30:29:0,30,450 +20 10024316 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:60:62:0,60,900 ./.:30:33:30:0,33,495 +20 10024317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:60:62:0,60,900 ./.:31:36:31:0,36,540 +20 10024318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:60:62:0,60,900 ./.:33:45:33:0,45,675 +20 10024319 . T . . END=10024320 GT:DP:GQ:MIN_DP:PL ./.:63:72:62:0,72,1080 ./.:32:42:31:0,42,630 +20 10024321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:90:62:0,90,1350 ./.:32:42:31:0,42,630 +20 10024322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:69:60:0,69,2100 ./.:30:45:30:0,45,675 +20 10024323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:27:56:0,27,1860 ./.:28:54:28:0,54,810 +20 10024324 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:0:53:0,0,1491 ./.:25:45:25:0,45,733 +20 10024325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:47:33:47:0,33,1611 ./.:22:57:22:0,57,855 +20 10024326 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:58:44:0,58,1605 ./.:22:13:22:0,13,583 +20 10024327 . G . . END=10024338 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:22:60:21:0,60,634 +20 10024339 . C . . END=10024347 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:26:72:25:0,72,808 +20 10024348 . C . . END=10024350 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:28:81:28:0,81,935 +20 10024351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:57:29:0,57,878 +20 10024352 . G . . END=10024357 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:84:28:0,84,853 +20 10024358 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:68:29:0,68,846 +20 10024359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:30:90:30:0,90,982 +20 10024360 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:28:84:28:0,84,898 +20 10024361 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:30:90:30:0,90,934 +20 10024362 . A . . END=10024363 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:87:29:0,87,876 +20 10024364 . T . . END=10024378 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:90:30:0,90,909 +20 10024379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:84:32:0,84,1006 +20 10024380 . C . . END=10024386 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:90:32:0,90,1350 +20 10024387 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:73:32:0,73,954 +20 10024388 . C T, . . BaseQRankSum=-9.240e-01;ClippingRankSum=0.00;DP=67;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=0.267 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:39:0,105,1509,105,1509,1509 ./.:13,14,0:27:99:.:351,0,344,390,386,776:4,9,5,9 +20 10024389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:73:33:0,73,1021 +20 10024390 . T . . END=10024405 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:93:31:0,93,987 +20 10024406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:74:33:0,74,988 +20 10024407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:96:33:0,96,1440 +20 10024408 . G . . END=10024419 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:99:33:0,99,1052 +20 10024420 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:86:34:0,86,1056 +20 10024421 . C . . END=10024426 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:99:34:0,99,1485 +20 10024427 . C . . END=10024428 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:96:35:0,96,1440 +20 10024429 . C . . END=10024431 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:99:35:0,99,1485 +20 10024432 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,944 +20 10024433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:35:0,102,1530 +20 10024434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:88:35:0,88,1024 +20 10024435 . T . . END=10024438 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:33:0,99,1043 +20 10024439 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:94:35:0,94,1088 +20 10024440 . G . . END=10024452 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:34:0,101,980 +20 10024453 . C . . END=10024454 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:96:35:0,96,1440 +20 10024455 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:99:36:0,99,1485 +20 10024456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:91:34:0,91,1014 +20 10024457 . C . . END=10024461 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:81:35:0,81,1215 +20 10024462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:75:36:0,75,1125 +20 10024463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:81:38:0,81,1215 +20 10024464 . G . . END=10024467 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:72:35:0,72,1080 +20 10024468 . C . . END=10024470 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:69:28:0,69,1035 +20 10024471 . T . . END=10024472 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:75:32:0,75,1125 +20 10024473 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:81:32:0,81,1215 +20 10024474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024475 . T . . END=10024476 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:87:35:0,87,1305 +20 10024477 . T . . END=10024484 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:33:0,90,1350 +20 10024485 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:81:32:0,81,1006 +20 10024486 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:68:34:0,68,1018 +20 10024488 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:73:33:0,73,992 +20 10024490 . T . . END=10024497 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:32:0,90,1350 +20 10024498 . A . . END=10024502 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:87:31:0,87,1305 +20 10024503 . G . . END=10024504 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:33:0,90,1350 +20 10024505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:82:31:0,82,919 +20 10024506 . T . . END=10024507 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:90:30:0,90,929 +20 10024508 . A . . END=10024509 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:82:33:0,82,959 +20 10024510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:96:33:0,96,1440 +20 10024511 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:66:32:0,66,957 +20 10024512 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:96:32:0,96,1049 +20 10024513 . G . . END=10024519 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:33:0,99,1011 +20 10024520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:91:36:0,91,1049 +20 10024521 . G . . END=10024586 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:34:0,101,1018 +20 10024587 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:46:97:46:0,97,1292 +20 10024588 . G . . END=10024618 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:46:99:41:0,111,1272 +20 10024619 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:96:43:0,96,1228 +20 10024620 . A . . END=10024639 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:39:0,99,1097 +20 10024640 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:98:38:0,98,1151 +20 10024641 . T . . END=10024664 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:99:37:0,104,1150 +20 10024665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:97:40:0,97,1220 +20 10024666 . C . . END=10024671 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:40:0,111,1262 +20 10024672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:80:42:0,80,1185 +20 10024673 . C . . END=10024674 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,120,1800 +20 10024675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:97:42:0,97,1180 +20 10024676 . A . . END=10024687 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:41:0,111,1253 +20 10024688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:98:43:0,98,1210 +20 10024689 . T . . END=10024714 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:41:0,106,1194 +20 10024715 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1102 +20 10024716 . A . . END=10024720 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:39:0,100,1161 +20 10024721 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:88:40:0,88,1124 +20 10024722 . T . . END=10024725 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:40:0,109,1224 +20 10024726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:98:39:0,98,1190 +20 10024727 . G . . END=10024728 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,114,1166 +20 10024729 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:93:40:0,93,1223 +20 10024730 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:99:38:0,114,1159 +20 10024731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:96:40:0,96,1205 +20 10024732 . T . . END=10024949 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:52:99:39:0,113,1201 +20 10024950 . G T, . . BaseQRankSum=0.081;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.132 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:79:99:39:.:.:0,105,1509,105,1509,1509 ./.:17,24,0:41:99:.:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024951 . G T, . . BaseQRankSum=1.14;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=-8.000e-02 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:79:99:39:.:.:0,105,1509,105,1509,1509 ./.:17,24,0:41:99:.:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024952 . T . . END=10024960 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,108,1285 +20 10024961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:97:43:0,97,1253 +20 10024962 . T . . END=10025052 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:47:99:42:0,101,1265 +20 10025053 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:93:48:0,93,1357 +20 10025054 . A . . END=10025069 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:99:46:0,115,1465 +20 10025070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:44:92:44:0,92,1157 +20 10025071 . G . . END=10025131 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:99:40:0,108,1241 +20 10025132 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:97:39:0,97,1216 +20 10025133 . C . . END=10025143 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,102,1530 +20 10025144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:67:39:0,67,1051 +20 10025145 . A . . END=10025148 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,102,1530 +20 10025149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:96:37:0,96,1440 +20 10025150 . C . . END=10025191 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:37:0,99,1162 +20 10025192 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:87:41:0,87,1171 +20 10025193 . T . . END=10025253 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:38:0,100,1145 +20 10025254 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:97:42:0,97,1280 +20 10025255 . T . . END=10025322 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:99:41:0,101,1269 +20 10025323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:76:45:0,76,1262 +20 10025324 . A . . END=10025503 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:57:99:41:0,106,1429 +20 10025504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:92:42:0,92,1235 +20 10025505 . G . . END=10025518 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:40:0,102,1530 +20 10025519 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:90:41:0,90,1225 +20 10025520 . T . . END=10025521 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:99:41:0,102,1530 +20 10025522 . T . . END=10025523 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:90:39:0,90,1350 +20 10025524 . A . . END=10025530 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:84:34:0,84,1260 +20 10025531 . T . . END=10025532 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:93:36:0,93,1395 +20 10025533 . T . . END=10025555 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:99:34:0,99,1206 +20 10025556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:88:40:0,88,1189 +20 10025557 . T . . END=10025560 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,111,1665 +20 10025561 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:89:39:0,89,1192 +20 10025562 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1164 +20 10025563 . C . . END=10025569 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:39:0,102,1194 +20 10025570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1158 +20 10025571 . T . . END=10025573 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,108,1620 +20 10025574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:98:38:0,98,1174 +20 10025575 . T . . END=10025620 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:36:0,100,1147 +20 10025621 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:94:41:0,94,1223 +20 10025622 . A . . END=10025642 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:99:41:0,120,1800 +20 10025643 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:51:82:51:0,82,1440 +20 10025644 . A . . END=10026301 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:54:99:38:0,102,1165 +20 10026302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:86:38:0,86,1139 +20 10026303 . A . . END=10026307 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:99:37:0,105,1575 +20 10026308 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:85:38:0,85,1136 +20 10026309 . G . . END=10026313 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,111,1178 +20 10026314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:92:39:0,92,1157 +20 10026315 . G . . END=10026347 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:39:0,114,1331 +20 10026348 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:92:41:0,92,1279 +20 10026349 . A . . END=10026356 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,120,1800 +20 10026357 . T C, . . BaseQRankSum=-6.420e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=355517,102;ReadPosRankSum=1.62 GT:AD:DP:GQ:PL:SB ./.:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 ./.:19,19,0:38:99:494,0,521,552,578,1130:8,11,11,8 +20 10026358 . A . . END=10026383 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:42:0,102,1231 +20 10026384 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:75:45:0,75,1206 +20 10026385 . A . . END=10026439 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:39:0,111,1254 +20 10026440 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:86:40:0,86,1172 +20 10026441 . A . . END=10026461 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:99:37:0,99,1485 +20 10026462 . T . . END=10026464 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:96:39:0,96,1440 +20 10026465 . C . . END=10026505 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:38:99:34:0,99,1053 +20 10026506 . C . . END=10026507 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:42:91:41:0,91,1173 +20 10026508 . C . . END=10026524 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:99:39:0,107,1246 +20 10026525 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:93:40:0,93,1190 +20 10026526 . C . . END=10026541 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:99:38:0,101,1176 +20 10026542 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:90:41:0,90,1244 +20 10026543 . G . . END=10026575 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:99:36:0,100,1149 +20 10026576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:38:97:38:0,97,1162 +20 10026577 . T . . END=10026599 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:99:37:0,101,1178 +20 10026600 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:91:41:0,91,1257 +20 10026601 . C . . END=10026696 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:39:0,104,1295 +20 10026697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:48:97:48:0,97,1363 +20 10026698 . C . . END=10026756 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:52:99:47:0,112,1425 +20 10026757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:54:98:54:0,98,1593 +20 10026758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:54:86:54:0,86,1535 +20 10026759 . C . . END=10026793 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:55:99:52:0,120,1800 +20 10026794 . C T, . . BaseQRankSum=2.83;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=371641,104;ReadPosRankSum=-5.330e-01 GT:AD:DP:GQ:PL:SB ./.:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 ./.:27,24,0:51:99:601,0,657,682,729,1411:15,12,11,13 +20 10026795 . G . . END=10027060 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:53:99:38:0,102,1116 +20 10027061 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:42:82:42:0,82,1170 +20 10027062 . T . . END=10027073 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:42:99:39:0,106,1243 +20 10027074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:97:44:0,97,1323 +20 10027075 . G . . END=10027080 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:47:99:47:0,120,1800 +20 10027081 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:91:46:0,91,1290 +20 10027082 . A . . END=10027193 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:99:40:0,101,1160 +20 10027194 . T . . END=10027201 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:90:45:0,90,1350 +20 10027202 . A . . END=10027203 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:48:87:48:0,87,1305 +20 10027204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:47:75:47:0,75,1125 +20 10027205 . T . . END=10027206 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:60:45:0,60,900 +20 10027207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:57:44:0,57,855 +20 10027208 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:54:44:0,54,810 +20 10027209 . T . . END=10027210 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:45:44:0,45,675 +20 10027211 . A . . END=10027212 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:42:44:0,42,630 +20 10027213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:33:45:0,33,495 +20 10027214 . G . . END=10027216 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:30:42:0,30,450 +20 10027217 . T . . END=10027219 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:27:44:0,27,405 +20 10027220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:24:43:0,24,360 +20 10027221 . T . . END=10027222 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:18:43:0,18,270 +20 10027223 . A . . END=10027225 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:41:15:41:0,15,225 +20 10027226 . A . . END=10027227 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:43:18:43:0,18,270 +20 10027228 . G . . END=10027229 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:44:15:43:0,15,225 +20 10027230 . A . . END=10027231 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:45:9:44:0,9,135 +20 10027232 . A . . END=10027233 GT:DP:GQ:MIN_DP:PL ./.:70:99:52:0,115,1800 ./.:46:12:45:0,12,180 +20 10027234 . A ATTAG, . . BaseQRankSum=-4.060e-01;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.375;RAW_MQandDP=388151,113;ReadPosRankSum=0.211 GT:AD:DP:GQ:PL:SB ./.:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 ./.:1,40,0:41:65:1767,65,0,1770,126,1832:0,1,19,21 +20 10027235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:0:45:0,0,0 +20 10027236 . T . . END=10027304 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:99:41:0,114,1710 +20 10027305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:47:97:47:0,97,1267 +20 10027306 . C . . END=10027327 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:44:99:40:0,108,1208 +20 10027328 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:94:41:0,94,1286 +20 10027329 . T . . END=10027355 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:42:99:39:0,101,1207 +20 10027356 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:86:45:0,86,1212 +20 10027357 . T . . END=10027512 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:99:39:0,100,1167 +20 10027513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:90:41:0,90,1256 +20 10027514 . C . . END=10027517 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:40:99:39:0,100,1146 +20 10027518 . C . . END=10027519 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:91:41:0,91,1178 +20 10027520 . T . . END=10027551 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:99:38:0,105,1159 +20 10027552 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:38:95:38:0,95,1089 +20 10027553 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:37:99:37:0,111,1163 +20 10027554 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:37:86:37:0,86,1078 +20 10027555 . C . . END=10027801 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:49:99:36:0,100,1146 +20 10027802 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:88:41:0,88,1215 +20 10027803 . T . . END=10027867 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:50:99:42:0,115,1296 +20 10027868 . A G, . . BaseQRankSum=-4.141e+00;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.032;RAW_MQandDP=476882,134;ReadPosRankSum=1.87 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 ./.:19,24,0:43:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:10,9,14,10 +20 10027869 . A . . END=10027871 GT:DP:GQ:MIN_DP:PL ./.:86:99:85:0,120,1800 ./.:48:99:46:0,120,1800 +20 10027872 . A G, . . BaseQRankSum=-8.550e-01;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.101;RAW_MQandDP=458882,129;ReadPosRankSum=1.05 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 ./.:18,24,0:42:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:9,9,14,10 +20 10027873 . G . . END=10027989 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:41:0,105,1244 +20 10027990 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:75:42:0,75,1081 +20 10027991 . G . . END=10028073 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:38:0,103,1137 +20 10028074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:91:42:0,91,1216 +20 10028075 . G . . END=10028079 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:40:0,99,1485 +20 10028080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:96:39:0,96,1440 +20 10028081 . A . . END=10028082 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:40:0,99,1485 +20 10028083 . A . . END=10028087 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:93:36:0,93,1395 +20 10028088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,99,1485 +20 10028089 . A . . END=10028096 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:93:33:0,93,1395 +20 10028097 . C . . END=10028102 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:35:0,99,1485 +20 10028103 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:96:36:0,96,1440 +20 10028104 . A . . END=10028111 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10028112 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:34:87:34:0,87,1062 +20 10028113 . T . . END=10028116 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:35:0,105,1108 +20 10028117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:82:36:0,82,1102 +20 10028118 . T . . END=10028121 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:36:0,105,1156 +20 10028122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:97:36:0,97,1074 +20 10028123 . A . . END=10028126 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10028127 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10028128 . C . . END=10028146 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:33:0,99,1013 +20 10028147 . T . . END=10028155 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:90:34:0,90,1350 +20 10028156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10028157 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:93:36:0,93,1395 +20 10028158 . T . . END=10028180 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:99:36:0,99,1152 +20 10028181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:43:95:43:0,95,1209 +20 10028182 . A . . END=10028301 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:40:0,105,1274 +20 10028302 . G T, . . BaseQRankSum=1.50;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=0.800 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:80:99:55:.:.:0,120,1800,120,1800,1800 ./.:30,18,0:48:99:.:0|1:10028302_G_T:634,0,1476,724,1533,2257:14,16,14,4 +20 10028303 . T . . END=10028315 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:42:0,114,1334 +20 10028316 . C T, . . BaseQRankSum=0.911;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=-7.190e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:80:99:55:.:.:0,120,1800,120,1800,1800 ./.:25,17,0:42:99:.:0|1:10028302_G_T:621,0,1379,699,1433,2132:12,13,12,5 +20 10028317 . T . . END=10028346 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:99:38:0,108,1238 +20 10028347 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:98:38:0,98,1149 +20 10028348 . C . . END=10028351 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:36:0,102,1166 +20 10028352 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:98:37:0,98,1166 +20 10028353 . G . . END=10028370 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:99:36:0,102,1530 +20 10028371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:83:39:0,83,1138 +20 10028372 . T . . END=10028400 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:38:0,101,1234 +20 10028401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:90:36:0,90,1052 +20 10028402 . C . . END=10028723 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:99:35:0,99,1112 +20 10028724 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:97:38:0,97,1170 +20 10028725 . A G, . . BaseQRankSum=-2.165e+00;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.184 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:55:0,120,1800,120,1800,1800 ./.:17,19,0:36:99:.:467,0,436,518,493,1011:8,9,8,11 +20 10028726 . T . . END=10028727 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:37:0,99,1485 +20 10028728 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:96:37:0,96,1440 +20 10028729 . A . . END=10028738 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:33:0,99,1002 +20 10028739 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:77:35:0,77,1058 +20 10028740 . T . . END=10028756 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:36:0,99,1485 +20 10028757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:94:37:0,94,1057 +20 10028758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,108,1620 +20 10028759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:88:35:0,88,1026 +20 10028760 . T . . END=10028779 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:37:0,101,1079 +20 10028780 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:78:40:0,78,1111 +20 10028781 . A . . END=10028847 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:99:40:0,99,1209 +20 10028848 . T . . END=10028849 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:93:45:0,93,1395 +20 10028850 . T . . END=10028852 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:43:81:41:0,81,1215 +20 10028853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:78:44:0,78,1170 +20 10028854 . C . . END=10028865 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:63:39:0,63,945 +20 10028866 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:32:39:0,32,952 +20 10028867 . A ATG, . . BaseQRankSum=-6.100e-02;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=2.71;RAW_MQandDP=471041,128;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL:SB ./.:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 ./.:13,19,0:32:99:584,0,361,623,421,1045:6,7,9,10 +20 10028868 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:0:40:0,0,31 +20 10028869 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:95:41:0,95,1143 +20 10028870 . T . . END=10028871 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:80:41:0,80,1120 +20 10028872 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:42:70:42:0,70,1196 +20 10028873 . G . . END=10028897 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:37:0,99,1282 +20 10028898 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:95:38:0,95,1219 +20 10028899 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:81:38:0,81,1126 +20 10028900 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:99:38:0,102,1530 +20 10028901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:86:38:0,86,1128 +20 10028902 . T . . END=10028906 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:37:0,102,1530 +20 10028907 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:37:0,90,1087 +20 10028908 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,99,1167 +20 10028909 . A . . END=10028910 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:93:37:0,93,1075 +20 10028911 . T . . END=10028964 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:37:0,100,1119 +20 10028965 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:98:37:0,98,1084 +20 10028966 . T . . END=10028970 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,105,1575 +20 10028971 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1071 +20 10028972 . A . . END=10028983 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:36:0,99,1485 +20 10028984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:79:37:0,79,1131 +20 10028985 . G . . END=10028989 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:37:0,105,1575 +20 10028990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:98:39:0,98,1204 +20 10028991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:39:0,114,1710 +20 10028992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:97:39:0,97,1160 +20 10028993 . A . . END=10029056 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:36:0,99,1151 +20 10029057 . A . . END=10029064 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:34:0,90,1121 +20 10029065 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:89:35:0,89,1070 +20 10029066 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029067 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:79:35:0,79,1018 +20 10029068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:72:34:0,72,981 +20 10029070 . T . . END=10029071 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:86:33:0,86,1056 +20 10029072 . A . . END=10029074 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:33:0,90,1350 +20 10029075 . C . . END=10029076 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:80:34:0,80,990 +20 10029077 . C . . END=10029078 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:36:0,90,1350 +20 10029079 . T . . END=10029088 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:36:0,102,1108 +20 10029089 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:96:39:0,96,1229 +20 10029090 . A . . END=10029103 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:44:99:39:0,108,1373 +20 10029104 . G A, . . DP=103;ExcessHet=3.01;RAW_MQandDP=154800,43 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:60:0,120,1800,120,1800,1800 ./.:0,43,0:43:99:.:1347,128,0,1347,128,1347:0,0,21,22 +20 10029105 . T . . END=10029341 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:48:99:42:0,113,1270 +20 10029342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:43:96:43:0,96,1194 +20 10029343 . T . . END=10029376 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:45:99:42:0,99,1221 +20 10029377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:79:41:0,79,1184 +20 10029378 . A . . END=10029385 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:39:0,111,1665 +20 10029386 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:70:40:0,70,1172 +20 10029387 . A . . END=10029645 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:49:99:36:0,101,1238 +20 10029646 . G . . END=10029662 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:92:33:0,92,1120 +20 10029663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:69:34:0,69,1031 +20 10029664 . G . . END=10029665 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:90:33:0,90,1350 +20 10029666 . A . . END=10029673 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:87:31:0,87,1305 +20 10029674 . T . . END=10029678 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:32:0,90,1049 +20 10029679 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,982 +20 10029680 . C . . END=10029681 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:87:32:0,87,1305 +20 10029682 . G . . END=10029692 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:90:32:0,90,1350 +20 10029693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:77:31:0,77,980 +20 10029694 . A . . END=10029695 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:90:31:0,90,1350 +20 10029696 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:50:32:0,50,959 +20 10029697 . T . . END=10029698 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10029699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:73:33:0,73,1033 +20 10029700 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:33:0,84,1053 +20 10029701 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10029702 . G . . END=10029714 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:84:29:0,84,1260 +20 10029715 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:76:29:0,76,904 +20 10029716 . T . . END=10029717 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10029718 . C . . END=10029719 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:30:76:29:0,76,895 +20 10029720 . T . . END=10029729 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:30:0,90,971 +20 10029730 . A . . END=10029731 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:81:32:0,81,976 +20 10029732 . G . . END=10029734 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:96:33:0,96,1440 +20 10029735 . C . . END=10029741 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:33:0,84,1260 +20 10029742 . C . . END=10029746 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:90:31:0,90,1350 +20 10029747 . G . . END=10029765 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:33:0,99,1011 +20 10029766 . T . . END=10029769 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:96:36:0,96,1440 +20 10029770 . A . . END=10029772 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,99,1485 +20 10029773 . A . . END=10029775 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029776 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:87:35:0,87,1039 +20 10029777 . C . . END=10029778 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:96:34:0,96,1107 +20 10029779 . A . . END=10029783 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:35:0,99,1485 +20 10029784 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:78:36:0,78,1028 +20 10029785 . A . . END=10029789 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10029790 . T . . END=10029791 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:34:0,90,1073 +20 10029792 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:85:34:0,85,959 +20 10029793 . T . . END=10029797 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:92:34:0,92,1040 +20 10029798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:76:37:0,76,1067 +20 10029799 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:92:36:0,92,1089 +20 10029800 . A . . END=10029810 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10029811 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:84:37:0,84,1058 +20 10029812 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,111,1172 +20 10029813 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:96:36:0,96,1080 +20 10029814 . A . . END=10029815 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:35:0,105,949 +20 10029816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:79:35:0,79,916 +20 10029817 . T . . END=10029828 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:36:0,102,1069 +20 10029829 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:96:40:0,96,1227 +20 10029830 . A . . END=10029835 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:36:0,105,1062 +20 10029836 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:83:38:0,83,1083 +20 10029837 . A . . END=10029847 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:37:0,100,1122 +20 10029848 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:89:41:0,89,1125 +20 10029849 . A . . END=10029850 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:96:38:0,96,1077 +20 10029851 . A . . END=10030033 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:46:99:35:0,99,1185 +20 10030034 . T . . END=10030036 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10030037 . G . . END=10030044 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:34:0,99,1485 +20 10030045 . C . . END=10030046 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10030047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:87:34:0,87,1305 +20 10030048 . G . . END=10030049 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:36:0,90,1350 +20 10030050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:87:37:0,87,1305 +20 10030051 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:90:38:0,90,1350 +20 10030052 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:87:37:0,87,1305 +20 10030053 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:90:38:0,90,1350 +20 10030054 . G . . END=10030058 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:84:34:0,84,1013 +20 10030059 . A . . END=10030061 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:72:31:0,72,1080 +20 10030062 . T . . END=10030069 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:69:28:0,69,1035 +20 10030070 . A . . END=10030093 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:27:70:25:0,70,716 +20 10030094 . G . . END=10030095 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:27:65:27:0,65,800 +20 10030096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:81:28:0,81,1215 +20 10030097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:67:28:0,67,838 +20 10030098 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:84:28:0,84,890 +20 10030099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:69:28:0,69,806 +20 10030100 . G . . END=10030104 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:84:28:0,84,799 +20 10030105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,916 +20 10030106 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:93:32:0,93,1395 +20 10030107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:80:32:0,80,971 +20 10030108 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:56:32:0,56,911 +20 10030109 . G . . END=10030114 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10030115 . A . . END=10030116 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:33:0,99,1078 +20 10030117 . C . . END=10030127 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:32:0,90,1064 +20 10030128 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,863 +20 10030129 . C . . END=10030139 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:31:0,84,1260 +20 10030140 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:78:32:0,78,939 +20 10030141 . A . . END=10030142 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:60:32:0,60,907 +20 10030143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:84:32:0,84,977 +20 10030144 . C . . END=10030145 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:30:71:30:0,71,845 +20 10030146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:65:31:0,65,939 +20 10030147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:53:33:0,53,926 +20 10030148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10030149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:64:33:0,64,971 +20 10030150 . T . . END=10030151 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:72:34:0,72,1016 +20 10030152 . A . . END=10030153 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10030154 . C . . END=10030155 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:90:35:0,90,1069 +20 10030156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:36:0,105,1575 +20 10030157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:85:34:0,85,1041 +20 10030158 . C . . END=10030159 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:34:0,102,1073 +20 10030160 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1111 +20 10030161 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10030162 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:89:36:0,89,1120 +20 10030163 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1097 +20 10030164 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:36:0,105,1575 +20 10030165 . A . . END=10030166 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:95:37:0,95,1154 +20 10030167 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:84:38:0,84,1139 +20 10030168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:99:38:0,103,1176 +20 10030169 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:84:38:0,84,1185 +20 10030170 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:76:36:0,76,1074 +20 10030171 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:81:37:0,81,1102 +20 10030172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,105,1575 +20 10030173 . A . . END=10030174 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:83:37:0,83,1153 +20 10030175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:91:36:0,91,1135 +20 10030176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1094 +20 10030177 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1076 +20 10030178 . C . . END=10030180 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:77:36:0,77,1047 +20 10030181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:80:37:0,80,1108 +20 10030182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,102,1530 +20 10030183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:78:36:0,78,1000 +20 10030184 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1062 +20 10030185 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:85:37:0,85,1094 +20 10030186 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:92:37:0,92,1125 +20 10030187 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1025 +20 10030188 . T A, . . BaseQRankSum=1.36;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=404041,113;ReadPosRankSum=0.917 GT:AD:DP:GQ:PL:SB ./.:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 ./.:16,15,0:31:99:414,0,398,461,443,905:9,7,10,5 +20 10030189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:77:36:0,77,1082 +20 10030190 . T . . END=10030192 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:93:36:0,93,1395 +20 10030193 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:79:35:0,79,1082 +20 10030194 . C . . END=10030197 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:90:32:0,90,1350 +20 10030198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:85:33:0,85,936 +20 10030199 . A . . END=10030205 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:30:0,90,946 +20 10030206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:81:31:0,81,985 +20 10030207 . C . . END=10030216 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:90:31:0,90,942 +20 10030217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:83:34:0,83,907 +20 10030218 . T . . END=10030225 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:90:31:0,90,1350 +20 10030226 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:83:33:0,83,999 +20 10030227 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:74:32:0,74,996 +20 10030228 . G . . END=10030230 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:93:32:0,93,1395 +20 10030231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:70:32:0,70,939 +20 10030232 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:83:32:0,83,939 +20 10030233 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:72:31:0,72,933 +20 10030234 . C . . END=10030237 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:85:31:0,85,1014 +20 10030238 . C . . END=10030239 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:90:32:0,90,1350 +20 10030240 . G . . END=10030255 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:81:29:0,81,1215 +20 10030256 . T . . END=10030272 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:29:75:26:0,75,803 +20 10030273 . A . . END=10030275 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:26:69:26:0,69,1035 +20 10030276 . C . . END=10030282 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:27:72:26:0,72,821 +20 10030283 . A . . END=10030285 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:28:81:28:0,81,1215 +20 10030286 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:29:76:29:0,76,868 +20 10030287 . A . . END=10030289 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:81:28:0,81,1215 +20 10030290 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:68:30:0,68,839 +20 10030291 . C . . END=10030302 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:81:30:0,81,1215 +20 10030303 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,1350 +20 10030304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:61:30:0,61,852 +20 10030305 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:82:32:0,82,923 +20 10030306 . G . . END=10030308 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,923 +20 10030309 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:77:31:0,77,873 +20 10030310 . G . . END=10030316 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:30:0,90,952 +20 10030317 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:66:32:0,66,924 +20 10030318 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:75:31:0,75,883 +20 10030319 . G . . END=10030320 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,1350 +20 10030321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:87:31:0,87,1305 +20 10030322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:90:32:0,90,1350 +20 10030323 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:85:32:0,85,948 +20 10030324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:69:33:0,69,963 +20 10030325 . G . . END=10030329 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:93:33:0,93,1395 +20 10030330 . C . . END=10030335 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:99:33:0,99,1016 +20 10030336 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:94:35:0,94,1045 +20 10030337 . C . . END=10030349 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:99:34:0,99,1027 +20 10030350 . T . . END=10030352 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:96:33:0,96,1440 +20 10030353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:73:35:0,73,980 +20 10030354 . T . . END=10030372 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:99:34:0,99,1112 +20 10030373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:92:42:0,92,1109 +20 10030374 . G . . END=10030446 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:44:99:40:0,105,1175 +20 10030447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:97:42:0,97,1094 +20 10030448 . T . . END=10030451 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:99:41:0,115,1265 +20 10030452 . G A, . . BaseQRankSum=-1.085e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=-4.040e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:41:0,103,1575,103,1575,1575 ./.:12,28,0:40:99:.:768,0,241,804,325,1129:8,4,15,13 +20 10030453 . A . . END=10030477 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:44:99:40:0,102,1208 +20 10030478 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:41:90:41:0,90,1197 +20 10030479 . G . . END=10030505 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:43:99:39:0,100,1192 +20 10030506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:39:97:39:0,97,1157 +20 10030507 . C . . END=10030510 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:38:99:37:0,105,1190 +20 10030511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:93:37:0,93,1101 +20 10030512 . C . . END=10030530 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:99:36:0,102,1138 +20 10030531 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:38:98:38:0,98,1111 +20 10030532 . C . . END=10030566 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:48:99:35:0,100,1034 +20 10030567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1511 ./.:48:99:35:0,100,1034 +20 10030568 . C . . END=10030806 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:48:99:35:0,100,1034 +20 10030807 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:42:95:42:0,95,1192 +20 10030808 . A . . END=10030810 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:42:99:40:0,100,1109 +20 10030811 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:42:77:42:0,77,1172 +20 10030812 . C . . END=10030821 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:41:99:39:0,102,1136 +20 10030822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:41:93:41:0,93,1272 +20 10030823 . G . . END=10030830 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:99:37:0,102,1530 +20 10030831 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:90:38:0,90,1130 +20 10030832 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:99:37:0,102,1530 +20 10030833 . A . . END=10030835 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:93:38:0,93,1110 +20 10030836 . T . . END=10030837 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:40:99:39:0,99,1485 +20 10030838 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:96:39:0,96,1440 +20 10030839 . T . . END=10030845 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:37:0,99,1211 +20 10030846 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:96:37:0,96,1440 +20 10030847 . C . . END=10030856 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:99:35:0,99,1153 +20 10030857 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:91:36:0,91,1079 +20 10030858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:88:37:0,88,1142 +20 10030859 . G . . END=10030930 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:50:99:36:0,107,1094 +20 10030931 . C A, . . BaseQRankSum=3.72;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=-2.630e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,114,1710,114,1710,1710 ./.:31,22,0:53:99:.:571,0,659,662,725,1387:13,18,5,17 +20 10030932 . G . . END=10031065 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:55:99:37:0,99,1132 +20 10031066 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:89:35:0,89,978 +20 10031067 . T . . END=10031069 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:37:0,99,1176 +20 10031070 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:92:39:0,92,1148 +20 10031071 . T . . END=10031078 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:99:38:0,99,1485 +20 10031079 . G . . END=10031080 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:92:37:0,92,1127 +20 10031081 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:48:36:0,48,972 +20 10031082 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:93:36:0,93,1395 +20 10031083 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:38:0,99,1485 +20 10031084 . T . . END=10031087 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:96:37:0,96,1440 +20 10031088 . A . . END=10031089 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:37:0,99,1485 +20 10031090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:87:36:0,87,1125 +20 10031091 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:99:36:0,99,1485 +20 10031092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:78:35:0,78,1081 +20 10031093 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:93:34:0,93,1395 +20 10031094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:99:36:0,99,1485 +20 10031095 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:96:36:0,96,1150 +20 10031096 . A . . END=10031098 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:35:0,99,1485 +20 10031099 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:94:35:0,94,1081 +20 10031100 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:89:35:0,89,1049 +20 10031101 . T . . END=10031103 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:34:0,99,1485 +20 10031104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:32:60:32:0,60,869 +20 10031105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:33:96:33:0,96,1440 +20 10031106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:33:84:33:0,84,1023 +20 10031107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:33:96:33:0,96,1440 +20 10031108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:99:34:0,99,1485 +20 10031109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:70:34:0,70,1079 +20 10031110 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:96:34:0,96,1440 +20 10031111 . A . . END=10031113 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:35:0,99,1485 +20 10031114 . T . . END=10031115 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:93:35:0,93,1395 +20 10031116 . T . . END=10031118 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:99:37:0,99,1485 +20 10031119 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:79:38:0,79,1132 +20 10031120 . T . . END=10031130 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:38:0,102,1166 +20 10031131 . G . . END=10031136 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:37:96:34:0,96,1440 +20 10031137 . T . . END=10031139 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:36:99:35:0,99,1485 +20 10031140 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:96:34:0,96,1440 +20 10031141 . G . . END=10031145 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:34:99:33:0,99,1015 +20 10031146 . A . . END=10031147 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:90:34:0,90,1001 +20 10031148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:99:35:0,102,1530 +20 10031149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:35:94:35:0,94,1074 +20 10031150 . G . . END=10031164 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:38:99:34:0,99,1037 +20 10031165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:39:82:39:0,82,1110 +20 10031166 . A . . END=10031167 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:40:99:39:0,100,1169 +20 10031168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:43:96:43:0,96,1323 +20 10031169 . T . . END=10031174 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:44:99:43:0,102,1349 +20 10031175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:46:92:46:0,92,1319 +20 10031176 . T . . END=10031225 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:47:99:42:0,99,1288 +20 10031226 . T . . END=10031234 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:49:90:46:0,90,1350 +20 10031235 . T . . END=10031239 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:48:84:47:0,84,1260 +20 10031240 . G . . END=10031253 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,114,1710 ./.:47:75:43:0,75,1125 +20 10031254 . A AT, . . BaseQRankSum=0.497;ClippingRankSum=0.00;DP=131;ExcessHet=3.01;MQRankSum=0.017;RAW_MQandDP=469210,131;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL:SB ./.:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 ./.:23,19,0:42:99:583,0,725,653,782,1435:12,11,8,11 +20 10031255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:86:0,120,1800 ./.:48:0:48:0,0,216 +20 10031256 . G . . END=10031341 GT:DP:GQ:MIN_DP:PL ./.:95:99:86:0,120,1800 ./.:48:99:45:0,105,1321 +20 10031342 . G A, . . BaseQRankSum=3.43;ClippingRankSum=0.00;DP=138;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=494041,138;ReadPosRankSum=0.857 GT:AD:DP:GQ:PL:SB ./.:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 ./.:22,23,0:45:99:620,0,534,685,603,1288:12,10,10,13 +20 10031343 . A . . END=10031432 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:45:99:37:0,100,1121 +20 10031433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:82:38:0,82,1143 +20 10031434 . T . . END=10031451 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:99:35:0,99,1089 +20 10031452 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:88:36:0,88,1094 +20 10031453 . G . . END=10031457 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:99:36:0,108,1090 +20 10031458 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:97:36:0,97,1097 +20 10031459 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:35:99:35:0,104,1042 +20 10031460 . T . . END=10031462 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:93:35:0,93,1395 +20 10031463 . A . . END=10031498 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:36:0,99,1103 +20 10031499 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:41:77:41:0,77,1157 +20 10031500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:40:0,102,1530 +20 10031501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:79:39:0,79,1111 +20 10031502 . C . . END=10031506 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:99:36:0,99,1485 +20 10031507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:96:38:0,96,1049 +20 10031508 . T . . END=10031510 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:99:36:0,105,1575 +20 10031511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:97:37:0,97,1148 +20 10031512 . A . . END=10031521 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:38:0,101,1126 +20 10031522 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:96:38:0,96,1122 +20 10031523 . C . . END=10031764 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:46:99:38:0,101,1152 +20 10031765 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:98:38:0,98,1100 +20 10031766 . T . . END=10031769 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:38:0,105,1575 +20 10031770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:94:40:0,94,1184 +20 10031771 . A . . END=10031772 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:39:0,108,1213 +20 10031773 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:94:40:0,94,1227 +20 10031774 . T . . END=10031794 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:39:0,99,1153 +20 10031795 . G . . END=10031797 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:93:37:0,93,1395 +20 10031798 . G A, . . DP=138;ExcessHet=3.01;RAW_MQandDP=491810,138 GT:AD:DP:GQ:PL:SB ./.:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 ./.:0,34,0:34:99:1056,102,0,1056,102,1056:0,0,15,19 +20 10031799 . T . . END=10031813 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:35:90:33:0,90,1056 +20 10031814 . A . . END=10031818 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:33:87:33:0,87,1305 +20 10031819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:31:90:31:0,90,1350 +20 10031820 . T . . END=10031822 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:34:87:32:0,87,1305 +20 10031823 . T . . END=10031825 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:32:93:32:0,93,1395 +20 10031826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:32:85:32:0,85,980 +20 10031827 . C T, . . BaseQRankSum=3.55;ClippingRankSum=0.00;DP=140;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=501769,140;ReadPosRankSum=-6.750e-01 GT:AD:DP:GQ:PL:SB ./.:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 ./.:18,13,0:31:99:317,0,456,371,495,866:8,10,4,9 +20 10031828 . T . . END=10031832 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:35:90:33:0,90,1350 +20 10031833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:37:0,99,1485 +20 10031834 . G . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10031835 . T . . END=10031842 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:99:35:0,99,1485 +20 10031843 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:35:94:35:0,94,1081 +20 10031844 . G . . END=10031913 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:34:0,99,1079 +20 10031914 . A . . END=10031915 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10031916 . T . . END=10031953 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:34:0,99,1057 +20 10031954 . A . . END=10031960 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:90:34:0,90,1037 +20 10031961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:79:37:0,79,1088 +20 10031962 . A . . END=10031969 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:93:36:0,93,1395 +20 10031970 . A . . END=10031989 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:36:0,99,1132 +20 10031990 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:95:37:0,95,1146 +20 10031991 . G . . END=10032010 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:37:0,102,1180 +20 10032011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:76:40:0,76,1104 +20 10032012 . A . . END=10032093 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:45:99:38:0,101,1140 +20 10032094 . G A, . . BaseQRankSum=5.49;ClippingRankSum=0.00;DP=132;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=475200,132;ReadPosRankSum=0.092 GT:AD:DP:GQ:PL:SB ./.:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 ./.:21,27,0:48:99:677,0,458,740,539,1279:12,9,17,10 +20 10032095 . T . . END=10032168 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:47:99:41:0,102,1220 +20 10032169 . C . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:41:92:41:0,92,1152 +20 10032170 . A . . END=10032186 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:43:99:42:0,110,1209 +20 10032187 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:42:94:42:0,94,1252 +20 10032188 . A . . END=10032199 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:41:99:40:0,100,1156 +20 10032200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:95:39:0,95,1190 +20 10032201 . G . . END=10032205 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:40:99:39:0,99,1156 +20 10032206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:82:39:0,82,1115 +20 10032207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:99:39:0,105,1575 +20 10032208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:90:39:0,90,1205 +20 10032209 . T . . END=10032221 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:99:39:0,101,1150 +20 10032222 . T . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:37:87:37:0,87,1065 +20 10032223 . A . . END=10032232 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:36:99:35:0,102,1029 +20 10032233 . G . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:38:98:38:0,98,1078 +20 10032234 . A . . END=10032243 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:40:99:38:0,105,1150 +20 10032244 . T . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:91:39:0,91,1186 +20 10032245 . T . . END=10032412 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:50:99:40:0,104,1180 +20 10032413 . T G, . . BaseQRankSum=-2.742e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=413138,116;ReadPosRankSum=-1.110e-01 GT:AD:DP:GQ:PL:SB ./.:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 ./.:23,26,0:49:99:565,0,554,634,631,1265:14,9,17,9 +20 10032414 . T . . END=10032599 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:54:99:42:0,120,1800 +20 10032600 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:45:97:45:0,97,1324 +20 10032601 . C . . END=10032646 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:47:99:44:0,104,1291 +20 10032647 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:46:82:46:0,82,1238 +20 10032648 . G . . END=10032824 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:48:99:35:0,99,1056 +20 10032825 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:95:38:0,95,1066 +20 10032826 . A . . END=10032829 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:40:99:39:0,104,1203 +20 10032830 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:40:72:40:0,72,1097 +20 10032831 . T . . END=10032881 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:43:99:39:0,99,1172 +20 10032882 . A T, . . BaseQRankSum=-1.280e-01;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=425641,119;ReadPosRankSum=0.626 GT:AD:DP:GQ:PL:SB ./.:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 ./.:1,41,0:42:93:1306,93,0,1309,123,1340:1,0,21,20 +20 10032883 . A . . END=10032923 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:49:99:44:0,102,1380 +20 10032924 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:48:93:48:0,93,1395 +20 10032925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:48:84:48:0,84,1260 +20 10032926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:48:75:48:0,75,1125 +20 10032927 . T . . END=10032940 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:60:44:0,60,900 +20 10032941 . T . . END=10032943 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:57:44:0,57,855 +20 10032944 . G . . END=10032945 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:54:44:0,54,810 +20 10032946 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:51:44:0,51,765 +20 10032947 . G . . END=10032948 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:48:45:0,48,720 +20 10032949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:45:45:0,45,675 +20 10032950 . T . . END=10032951 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:39:46:0,39,585 +20 10032952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:36:45:0,36,540 +20 10032953 . C . . END=10032954 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:30:45:0,30,450 +20 10032955 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:44:27:44:0,27,405 +20 10032956 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:21:45:0,21,315 +20 10032957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:18:45:0,18,270 +20 10032958 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:15:45:0,15,225 +20 10032959 . T . . END=10032961 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:12:45:0,12,180 +20 10032962 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:46:6:46:0,6,90 +20 10032963 . C . . END=10032971 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,120,1800 ./.:45:0:44:0,0,0 +20 10032972 . C CAT, . . BaseQRankSum=-3.540e-01;DP=109;ExcessHet=3.01;MQRankSum=-1.017e+00;RAW_MQandDP=390941,109;ReadPosRankSum=-1.232e+00 GT:AD:DP:GQ:PL:SB ./.:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 ./.:0,43,0:43:99:1944,132,0,1944,132,1944:0,0,21,22 +20 10032973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:43:0:43:0,0,0 +20 10032974 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:44:96:44:0,96,1179 +20 10032975 . A . . END=10033031 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:99:36:0,99,1093 +20 10033032 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:77:37:0,77,932 +20 10033033 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:80:38:0,80,995 +20 10033034 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:99:39:0,99,1485 +20 10033035 . T . . END=10033036 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:96:36:0,96,1440 +20 10033037 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:85:37:0,85,1018 +20 10033038 . T . . END=10033045 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:90:33:0,90,1350 +20 10033046 . C . . END=10033047 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:81:33:0,81,966 +20 10033048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10033049 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:86:33:0,86,952 +20 10033050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:93:32:0,93,1395 +20 10033051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:71:34:0,71,1032 +20 10033052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10033053 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10033054 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:92:36:0,92,1108 +20 10033055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:99:34:0,102,1073 +20 10033056 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:88:35:0,88,1053 +20 10033057 . A . . END=10033058 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10033059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:91:36:0,91,1047 +20 10033060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:80:36:0,80,1021 +20 10033061 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:70:38:0,70,1080 +20 10033062 . C . . END=10033063 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:92:36:0,92,1078 +20 10033064 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:81:38:0,81,1021 +20 10033065 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:99:38:0,108,1620 +20 10033066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:83:38:0,83,1098 +20 10033067 . T . . END=10033072 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:39:0,106,1162 +20 10033073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:93:40:0,93,1128 +20 10033074 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:40:0,104,1212 +20 10033075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:95:38:0,95,1091 +20 10033076 . C . . END=10033077 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:99:39:0,100,1154 +20 10033078 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:86:42:0,86,1178 +20 10033079 . T . . END=10033084 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:39:0,103,1167 +20 10033085 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:97:40:0,97,1170 +20 10033086 . A . . END=10033096 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:40:0,103,1170 +20 10033097 . A . . END=10033098 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:90:41:0,90,1225 +20 10033099 . A . . END=10033105 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:99:38:0,102,1160 +20 10033106 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:97:38:0,97,1158 +20 10033107 . C . . END=10033341 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:47:99:37:0,99,1147 +20 10033342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:47:93:47:0,93,1352 +20 10033343 . A . . END=10033473 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:54:99:45:0,120,1800 +20 10033474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:46:91:46:0,91,1294 +20 10033475 . G . . END=10033513 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:38:0,100,1071 +20 10033514 . T . . END=10033515 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:84:40:0,84,1175 +20 10033516 . A . . END=10033558 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:99:40:0,105,1172 +20 10033559 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:73:41:0,73,1177 +20 10033560 . T . . END=10033588 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:39:0,111,1187 +20 10033589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:88:39:0,88,1053 +20 10033590 . G . . END=10033621 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:44:99:39:0,107,1160 +20 10033622 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:80:38:0,80,1106 +20 10033623 . T . . END=10033636 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:36:0,108,1126 +20 10033637 . C . . . GT:DP:GQ:MIN_DP:PL ./.:58:97:58:0,97,2210 ./.:40:99:36:0,108,1126 +20 10033638 . C . . END=10033652 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:40:99:36:0,108,1126 +20 10033653 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:43:98:43:0,98,1292 +20 10033654 . A . . END=10033675 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:42:99:39:0,106,1224 +20 10033676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:41:77:41:0,77,1201 +20 10033677 . G . . END=10033854 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:49:99:39:0,99,1370 +20 10033855 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:48:93:48:0,93,1350 +20 10033856 . A . . END=10033905 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:47:99:44:0,101,1273 +20 10033906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:47:75:47:0,75,1252 +20 10033907 . A . . END=10034010 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:43:99:38:0,99,1178 +20 10034011 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:83:39:0,83,1179 +20 10034012 . A . . END=10034013 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:99:38:0,99,1485 +20 10034014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:96:38:0,96,1440 +20 10034015 . C . . END=10034021 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10034022 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:88:35:0,88,1040 +20 10034023 . G . . END=10034039 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:99:33:0,99,1040 +20 10034040 . G . . END=10034055 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:90:33:0,90,1350 +20 10034056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:87:35:0,87,1305 +20 10034057 . T . . END=10034069 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:32:0,90,1350 +20 10034070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:83:33:0,83,979 +20 10034071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034072 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,990 +20 10034073 . T . . END=10034074 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034075 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:84:33:0,84,977 +20 10034076 . A . . END=10034082 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:93:31:0,93,931 +20 10034083 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:82:31:0,82,926 +20 10034084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034085 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:79:32:0,79,941 +20 10034086 . T . . END=10034087 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:93:32:0,93,1395 +20 10034088 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,991 +20 10034089 . T . . END=10034091 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10034092 . A . . END=10034095 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:93:34:0,93,1395 +20 10034096 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:70:34:0,70,952 +20 10034097 . T . . END=10034102 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:90:34:0,90,1350 +20 10034103 . C . . END=10034108 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:87:31:0,87,1305 +20 10034109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:78:30:0,78,894 +20 10034110 . G . . END=10034112 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:84:29:0,84,1260 +20 10034113 . T . . END=10034114 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10034115 . A . . END=10034120 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:31:0,87,1003 +20 10034121 . A . . END=10034122 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034123 . T . . END=10034124 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034125 . A . . END=10034128 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,971 +20 10034129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:65:33:0,65,938 +20 10034130 . A . . END=10034131 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034132 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:87:34:0,87,1075 +20 10034133 . G . . END=10034135 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:99:33:0,99,1055 +20 10034136 . A . . END=10034138 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:96:33:0,96,1440 +20 10034139 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:71:33:0,71,943 +20 10034140 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:34:0,90,975 +20 10034141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10034142 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:83:35:0,83,1046 +20 10034143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034144 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:57:35:0,57,936 +20 10034145 . A . . END=10034152 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:36:0,105,1103 +20 10034153 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:92:36:0,92,1090 +20 10034154 . A . . END=10034158 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:36:0,99,1104 +20 10034159 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:94:35:0,94,1032 +20 10034160 . T . . END=10034171 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,100,1142 +20 10034172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:81:37:0,81,1073 +20 10034173 . A . . END=10034177 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,102,1530 +20 10034178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:86:37:0,86,1083 +20 10034179 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10034180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:94:37:0,94,1100 +20 10034181 . G . . END=10034182 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034184 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10034185 . A . . END=10034190 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10034191 . A . . END=10034195 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:87:33:0,87,1305 +20 10034196 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:66:35:0,66,933 +20 10034197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:90:35:0,90,1350 +20 10034198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,1305 +20 10034199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:75:33:0,75,925 +20 10034200 . A . . END=10034201 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:87:31:0,87,1305 +20 10034202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:76:31:0,76,920 +20 10034203 . G . . END=10034214 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:82:30:0,82,910 +20 10034215 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:76:30:0,76,872 +20 10034216 . T . . END=10034226 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:29:84:28:0,84,879 +20 10034227 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:59:31:0,59,873 +20 10034228 . C . . END=10034229 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:81:31:0,81,990 +20 10034230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034231 . G . . END=10034233 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:85:32:0,85,966 +20 10034234 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:88:33:0,88,1027 +20 10034236 . A . . END=10034238 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034239 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:74:31:0,74,949 +20 10034240 . A . . END=10034244 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:93:32:0,93,1001 +20 10034245 . T . . END=10034251 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:99:33:0,99,1037 +20 10034252 . A . . END=10034256 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:93:36:0,93,1395 +20 10034257 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:74:38:0,74,1044 +20 10034258 . C . . END=10034272 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:35:0,99,1074 +20 10034273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:91:38:0,91,1114 +20 10034274 . T . . END=10034276 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,105,1147 +20 10034277 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:91:38:0,91,1079 +20 10034278 . C . . END=10034279 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:99:39:0,111,1665 +20 10034280 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:89:38:0,89,1134 +20 10034281 . T . . END=10034288 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,99,1133 +20 10034289 . A . . END=10034293 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:92:37:0,92,1112 +20 10034294 . A . . END=10034299 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:35:0,99,1090 +20 10034300 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:82:33:0,82,953 +20 10034301 . C . . END=10034303 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:99:35:0,105,1071 +20 10034304 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:93:37:0,93,1077 +20 10034305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1090 +20 10034306 . T C, . . BaseQRankSum=-2.200e-01;ClippingRankSum=0.00;DP=107;ExcessHet=3.01;MQRankSum=1.15;RAW_MQandDP=380210,107;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB ./.:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 ./.:11,19,0:30:99:486,0,219,519,275,794:5,6,14,5 +20 10034307 . T . . END=10034309 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,103,1113 +20 10034310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:65:37:0,65,1032 +20 10034311 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1099 +20 10034312 . T . . END=10034341 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:36:0,100,1142 +20 10034342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:92:41:0,92,1233 +20 10034343 . T . . END=10034356 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:39:0,105,1201 +20 10034357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:86:39:0,86,1130 +20 10034358 . C . . END=10034399 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:35:0,99,1127 +20 10034400 . A . . END=10034413 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:90:34:0,90,1027 +20 10034414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:78:34:0,78,978 +20 10034415 . T . . END=10034416 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:87:32:0,87,1305 +20 10034417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034418 . T . . END=10034424 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:84:32:0,84,960 +20 10034425 . C T, . . BaseQRankSum=1.76;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=115200,32;ReadPosRankSum=-8.950e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:55:0,120,1800,120,1800,1800 ./.:10,22,0:32:99:.:560,0,175,590,241,830:3,7,12,10 +20 10034426 . G . . END=10034429 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10034430 . C . . END=10034435 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:30:0,90,906 +20 10034436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034437 . C . . END=10034438 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:76:31:0,76,920 +20 10034439 . C . . END=10034447 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:81:31:0,81,1215 +20 10034448 . C . . END=10034449 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10034450 . T . . END=10034453 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034454 . A . . END=10034458 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034459 . G . . END=10034486 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:36:0,99,1485 +20 10034487 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:94:37:0,94,1158 +20 10034488 . C . . END=10034506 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:35:0,105,1045 +20 10034507 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:90:39:0,90,1233 +20 10034508 . A . . END=10034542 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:36:0,100,1162 +20 10034543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:62:39:0,62,1108 +20 10034544 . A . . END=10034615 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:36:0,99,1157 +20 10034616 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034617 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:86:36:0,86,1106 +20 10034618 . A . . END=10034622 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:92:36:0,92,1124 +20 10034623 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10034624 . C . . END=10034627 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10034628 . A . . END=10034635 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1485 +20 10034636 . T . . END=10034645 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:93:34:0,93,1395 +20 10034646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034647 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:88:35:0,88,1067 +20 10034648 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:79:35:0,79,1051 +20 10034649 . C . . END=10034667 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:34:0,99,1140 +20 10034668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:97:37:0,97,1117 +20 10034669 . A . . END=10034692 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,99,1485 +20 10034693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:95:39:0,95,1121 +20 10034694 . G . . END=10034710 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1032 +20 10034711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,994 +20 10034712 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:80:35:0,80,1063 +20 10034713 . T . . END=10034722 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1053 +20 10034723 . G . . END=10034724 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10034725 . A . . END=10034726 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10034727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:89:35:0,89,1045 +20 10034728 . T . . END=10034732 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:34:0,96,1064 +20 10034733 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:84:34:0,84,994 +20 10034734 . G . . END=10034737 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034738 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:87:29:0,87,810 +20 10034739 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:34:0,96,1440 +20 10034740 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:78:33:0,78,955 +20 10034741 . A . . END=10034742 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034743 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:88:36:0,88,1111 +20 10034744 . G . . END=10034760 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:33:0,99,1056 +20 10034761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:97:38:0,97,1110 +20 10034762 . C . . END=10034784 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:35:0,102,1117 +20 10034785 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:83:37:0,83,1091 +20 10034786 . A . . END=10034789 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1440 +20 10034790 . T . . END=10034791 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:38:0,99,1485 +20 10034792 . T . . END=10034802 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:90:33:0,90,1062 +20 10034803 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:80:34:0,80,1010 +20 10034804 . A . . END=10034807 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,1350 +20 10034808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:78:36:0,78,1084 +20 10034809 . G . . END=10034813 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:33:0,99,1033 +20 10034814 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,1009 +20 10034815 . G . . END=10034816 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034817 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,1010 +20 10034818 . T . . END=10034825 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:90:30:0,90,986 +20 10034826 . C . . END=10034837 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:80:30:0,80,1008 +20 10034838 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034839 . A . . END=10034848 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:84:31:0,84,1260 +20 10034849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034851 . G . . END=10034853 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034854 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:77:32:0,77,920 +20 10034855 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:93:32:0,93,1395 +20 10034856 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:79:32:0,79,901 +20 10034857 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,966 +20 10034858 . A . . END=10034868 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10034869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:82:34:0,82,1029 +20 10034870 . T . . END=10034873 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:93:31:0,93,950 +20 10034874 . T . . END=10034878 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:99:33:0,99,995 +20 10034879 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034880 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:75:33:0,75,1002 +20 10034881 . A . . END=10034889 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:32:0,90,1350 +20 10034890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:88:35:0,88,955 +20 10034891 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034892 . G . . END=10034901 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:93:34:0,93,1395 +20 10034902 . C . . END=10035153 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:46:99:37:0,99,1159 +20 10035154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:92:41:0,92,1186 +20 10035155 . A . . END=10035167 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:99:39:0,114,1187 +20 10035168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:98:41:0,98,1233 +20 10035169 . G . . END=10035179 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:99:38:0,105,1184 +20 10035180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:90:39:0,90,1179 +20 10035181 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:85:39:0,85,1156 +20 10035182 . C . . END=10035334 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:37:0,99,1113 +20 10035335 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:92:40:0,92,1255 +20 10035336 . T . . END=10035343 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:99:41:0,111,1326 +20 10035344 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:79:41:0,79,1113 +20 10035345 . T . . END=10035384 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:43:99:37:0,99,1131 +20 10035385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:86:38:0,86,1096 +20 10035386 . G . . END=10035388 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:93:36:0,93,1395 +20 10035389 . T . . END=10035396 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10035397 . T . . END=10035410 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10035411 . G . . END=10035413 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035414 . C . . END=10035417 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:33:0,96,1440 +20 10035418 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035419 . G . . END=10035423 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:34:0,96,1440 +20 10035424 . C . . END=10035427 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:85:34:0,85,921 +20 10035429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:99:33:0,99,930 +20 10035430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:96:32:0,96,987 +20 10035431 . C . . END=10035441 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1067 +20 10035442 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:97:38:0,97,1113 +20 10035443 . T . . END=10035446 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,102,1153 +20 10035447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1127 +20 10035448 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:37:0,99,1485 +20 10035449 . T . . END=10035452 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:96:37:0,96,1440 +20 10035453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:39:0,99,1485 +20 10035454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:92:38:0,92,1174 +20 10035455 . T . . END=10035615 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:44:99:37:0,102,1178 +20 10035616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:44:98:44:0,98,1200 +20 10035617 . T . . END=10035703 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:50:99:44:0,107,1304 +20 10035704 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:51:90:51:0,90,1305 +20 10035705 . T . . END=10036106 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:50:99:40:0,100,1200 +20 10036107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:1:67:0,1,1807 ./.:50:99:40:0,100,1200 +20 10036108 . C . . END=10036140 GT:DP:GQ:MIN_DP:PL ./.:53:99:41:0,102,1504 ./.:50:99:40:0,100,1200 +20 10036141 . C . . . GT:DP:GQ:MIN_DP:PL ./.:46:32:46:0,32,1246 ./.:50:99:40:0,100,1200 +20 10036142 . T . . END=10036146 GT:DP:GQ:MIN_DP:PL ./.:51:99:48:0,103,1665 ./.:50:99:40:0,100,1200 +20 10036147 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1481 ./.:50:99:40:0,100,1200 +20 10036148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:89:43:0,89,1557 ./.:50:99:40:0,100,1200 +20 10036149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:44:92:44:0,92,1471 ./.:50:99:40:0,100,1200 +20 10036150 . A . . END=10036156 GT:DP:GQ:MIN_DP:PL ./.:41:99:41:0,105,1433 ./.:50:99:40:0,100,1200 +20 10036157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:81:42:0,81,1385 ./.:50:99:40:0,100,1200 +20 10036158 . T . . END=10036160 GT:DP:GQ:MIN_DP:PL ./.:42:99:40:0,117,1755 ./.:50:99:40:0,100,1200 +20 10036161 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:82:42:0,82,1514 ./.:50:99:40:0,100,1200 +20 10036162 . G . . END=10036428 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:50:99:40:0,100,1200 +20 10036429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:42:96:42:0,96,1280 +20 10036430 . C . . END=10036633 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:52:99:38:0,104,1156 +20 10036634 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:55:93:55:0,93,1592 +20 10036635 . T . . END=10036663 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:56:99:52:0,119,1634 +20 10036664 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:54:98:54:0,98,1553 +20 10036665 . T . . END=10036875 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:53:99:39:0,99,1224 +20 10036876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:92:39:0,92,1184 +20 10036877 . A . . END=10036879 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:37:99:37:0,102,1530 +20 10036880 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:37:78:37:0,78,1099 +20 10036881 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:96:36:0,96,1440 +20 10036882 . A . . END=10036889 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:99:37:0,99,1485 +20 10036890 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:93:39:0,93,1162 +20 10036891 . A . . END=10036896 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:99:35:0,99,1485 +20 10036897 . C . . END=10036899 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:90:36:0,90,1350 +20 10036900 . G . . END=10036910 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:34:81:29:0,81,1215 +20 10036911 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:28:67:28:0,67,862 +20 10036912 . C . . END=10036913 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:81:28:0,81,1215 +20 10036914 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:59:29:0,59,842 +20 10036915 . T . . END=10036925 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:75:28:0,75,1125 +20 10036926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:81:29:0,81,1215 +20 10036927 . G . . END=10036929 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:78:27:0,78,1170 +20 10036930 . CGATAGCCCTAGCCCTAGATA C, . . BaseQRankSum=0.200;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=404447,129;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036931 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036932 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036933 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036934 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036935 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036936 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036937 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036938 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036939 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036940 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036941 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036942 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036943 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036944 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036945 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036946 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036947 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036948 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036949 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036950 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036951 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:70:0,120,1800 ./.:33:0:33:0,0,569 +20 10036952 . A . . END=10036956 GT:DP:GQ:MIN_DP:PL ./.:74:99:70:0,120,1800 ./.:33:90:33:0,90,1059 +20 10036957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:37:70:0,37,2472 ./.:35:37:35:0,37,931 +20 10036958 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:40:70:0,40,2490 ./.:35:39:35:0,39,926 +20 10036959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:70:0,120,1800 ./.:36:96:36:0,96,1126 +20 10036960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:41:70:0,41,2579 ./.:36:41:36:0,41,1033 +20 10036961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:40:70:0,40,2472 ./.:33:34:33:0,34,944 +20 10036962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:48:69:0,48,2428 ./.:35:40:35:0,40,990 +20 10036963 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:32:72:0,32,2462 ./.:36:44:36:0,44,951 +20 10036964 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:39:71:0,39,2535 ./.:36:43:36:0,43,1033 +20 10036965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:73:0,120,1800 ./.:36:93:36:0,93,1395 +20 10036966 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:60:74:0,60,2768 ./.:36:42:36:0,42,1044 +20 10036967 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:74:0,120,1800 ./.:34:93:34:0,93,1395 +20 10036968 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:64:74:0,64,2707 ./.:35:36:35:0,36,944 +20 10036969 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:36:35:0,36,944 +20 10036970 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:38:35:0,38,991 +20 10036971 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:35:34:0,35,958 +20 10036972 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:90:34:0,90,1350 +20 10036973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:37:34:0,37,982 +20 10036974 . A . . END=10036990 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:31:90:30:0,90,901 +20 10036991 . A . . END=10036997 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:36:99:34:0,99,1163 +20 10036998 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:36:84:36:0,84,1068 +20 10036999 . T . . END=10037011 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:37:0,105,1575 +20 10037012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:84:39:0,84,1111 +20 10037013 . A . . END=10037021 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:38:0,102,1222 +20 10037022 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:61:39:0,61,1130 +20 10037023 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:96:39:0,96,1440 +20 10037024 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:40:99:40:0,99,1485 +20 10037025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:40:91:40:0,91,1220 +20 10037026 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:39:0,99,1485 +20 10037027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:92:39:0,92,1204 +20 10037028 . A . . END=10037029 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:99:37:0,99,1485 +20 10037030 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:97:38:0,97,1133 +20 10037031 . A . . END=10037035 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:99:35:0,99,1485 +20 10037036 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:98:38:0,98,1104 +20 10037037 . C T, . . BaseQRankSum=3.50;DP=116;ExcessHet=3.01;MQRankSum=-1.193e+00;RAW_MQandDP=293262,81;ReadPosRankSum=-1.609e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,42,0:81:99:.:1465,0,1124,1580,1251,2831:28,11,28,14 ./.:.:37:99:35:0,102,1530,102,1530,1530 +20 10037038 . G . . END=10037051 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:37:99:35:0,102,1530 +20 10037052 . T . . END=10037054 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:87:35:0,87,1000 +20 10037055 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:99:35:0,99,1485 +20 10037056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:36:78:36:0,78,1030 +20 10037057 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:34:85:34:0,85,966 +20 10037058 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:99:35:0,102,1530 +20 10037059 . T . . END=10037060 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:36:96:36:0,96,1440 +20 10037061 . A . . END=10037072 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:99:34:0,99,1080 +20 10037073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:37:96:37:0,96,1440 +20 10037074 . T . . END=10037076 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:41:99:39:0,99,1485 +20 10037077 . C . . END=10037088 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:90:37:0,90,1072 +20 10037089 . G . . END=10037090 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:35:84:35:0,84,1260 +20 10037091 . A . . END=10037094 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:37:75:36:0,75,1125 +20 10037095 . A . . END=10037100 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:60:35:0,60,900 +20 10037101 . A . . END=10037102 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:39:51:39:0,51,765 +20 10037103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:40:48:40:0,48,720 +20 10037104 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:39:38:0,39,931 +20 10037105 . A . . END=10037106 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:39:42:38:0,42,630 +20 10037107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:38:45:38:0,45,675 +20 10037108 . G . . END=10037109 GT:DP:GQ:MIN_DP:PL ./.:88:99:75:0,120,1800 ./.:39:33:38:0,33,495 +20 10037110 . T TGATA, . . DP=111;ExcessHet=3.01;RAW_MQandDP=371419,111 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 ./.:0,36,0:36:99:1691,114,0,1691,114,1691:0,0,19,17 +20 10037111 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:43:0:43:0,0,0 +20 10037112 . A . . END=10037113 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:43:54:43:0,54,810 +20 10037114 . A . . END=10037116 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:45:57:44:0,57,855 +20 10037117 . T . . END=10037124 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:45:60:42:0,60,900 +20 10037125 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:44:54:44:0,54,810 +20 10037126 . G . . END=10037135 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:48:33:45:0,33,495 +20 10037136 . T . . END=10037137 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:47:27:47:0,27,405 +20 10037138 . G . . END=10037141 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:46:21:42:0,21,315 +20 10037142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:42:18:42:0,18,270 +20 10037143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:41:15:41:0,15,225 +20 10037144 . TGATA TGATAGATAGATA,T,TGATAGATA, . . DP=110;ExcessHet=3.01;RAW_MQandDP=329352,110 GT:AD:DP:GQ:PL:SB ./.:0,36,0,0,0:36:99:1861,127,0,1864,129,1866,1864,129,1866,1866,1864,129,1866,1866,1866:0,0,15,21 ./.:0,0,18,11,0:29:99:1218,1218,1218,461,462,407,756,757,0,724,1218,1218,462,757,1218:0,0,13,16 +20 10037145 . G *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037146 . A *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037147 . T *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037148 . A *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,111,1665,111,1665,1665 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:39:0:39:0,0,113 +20 10037150 . A . . END=10037154 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:81:37:0,81,1060 +20 10037155 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:78:37:0,78,1049 +20 10037156 . A . . END=10037159 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:87:37:0,87,1305 +20 10037160 . A . . END=10037165 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:90:36:0,90,1350 +20 10037166 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:89:38:0,89,1083 +20 10037167 . T . . END=10037177 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:93:36:0,93,1395 +20 10037178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:79:37:0,79,1070 +20 10037179 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:95:37:0,95,1065 +20 10037180 . A . . END=10037181 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:38:99:37:0,99,1485 +20 10037182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:96:37:0,96,1440 +20 10037183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:35:72:35:0,72,1024 +20 10037184 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:36:99:36:0,99,1485 +20 10037185 . G . . END=10037186 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,111,1665 ./.:37:74:36:0,74,1017 +20 10037187 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:0:68:0,0,2259 ./.:37:99:37:0,105,1575 +20 10037188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:66:0,120,1800 ./.:37:99:37:0,105,1575 +20 10037189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:50:67:0,50,2476 ./.:37:98:37:0,98,1114 +20 10037190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:62:67:0,62,2523 ./.:38:99:37:0,102,1530 +20 10037191 . T . . END=10037192 GT:DP:GQ:MIN_DP:PL ./.:67:99:66:0,120,1800 ./.:38:99:37:0,102,1530 +20 10037193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:95:68:0,95,2607 ./.:38:99:37:0,102,1530 +20 10037194 . T . . END=10037195 GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,101,1800 ./.:38:99:37:0,102,1530 +20 10037196 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,101,1800 ./.:37:93:37:0,93,1098 +20 10037197 . A . . END=10037198 GT:DP:GQ:MIN_DP:PL ./.:69:86:68:0,86,2535 ./.:40:99:38:0,99,1208 +20 10037199 . A . . END=10037222 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:40:99:38:0,99,1208 +20 10037223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:95:37:0,95,1043 +20 10037224 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:68:38:0,68,994 +20 10037225 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:82:37:0,82,1049 +20 10037226 . C . . END=10037245 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:37:0,106,1081 +20 10037246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:98:41:0,98,1200 +20 10037247 . T . . END=10037251 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:40:0,111,1665 +20 10037252 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:79:38:0,79,1062 +20 10037253 . G . . END=10037294 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:39:0,109,1136 +20 10037295 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:96:41:0,96,1152 +20 10037296 . C . . END=10037421 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:44:99:36:0,103,1035 +20 10037422 . T . . END=10037423 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:96:38:0,96,1045 +20 10037424 . A . . END=10037429 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:34:0,99,1485 +20 10037430 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:96:37:0,96,1044 +20 10037431 . C . . END=10037446 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:35:0,99,1157 +20 10037447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:89:36:0,89,892 +20 10037448 . A . . END=10037452 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:93:33:0,93,999 +20 10037453 . T . . END=10037455 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:38:0,99,1485 +20 10037456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:98:38:0,98,1083 +20 10037457 . A . . END=10037461 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:35:0,99,1082 +20 10037462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:85:35:0,85,1019 +20 10037463 . T . . END=10037485 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:33:0,99,997 +20 10037486 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:84:38:0,84,1050 +20 10037487 . C . . END=10037510 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:39:99:36:0,99,1167 +20 10037511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:42:87:42:0,87,1245 +20 10037512 . G . . END=10037527 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:38:0,105,1162 +20 10037528 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:78:41:0,78,1210 +20 10037529 . G . . END=10037588 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:38:0,104,1170 +20 10037589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:97:37:0,97,1108 +20 10037590 . A . . END=10037603 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:40:99:38:0,105,1575 +20 10037604 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:94:37:0,94,1063 +20 10037605 . A . . END=10037636 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:36:0,102,1164 +20 10037637 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:93:37:0,93,1081 +20 10037638 . C . . END=10037639 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:99:37:0,102,1530 +20 10037640 . G . . END=10037647 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:90:34:0,90,1350 +20 10037648 . A . . END=10037649 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:84:34:0,84,1260 +20 10037650 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:34:78:34:0,78,1170 +20 10037651 . C . . END=10037652 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:81:33:0,81,1215 +20 10037653 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:78:33:0,78,1170 +20 10037654 . G . . END=10037660 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:81:30:0,81,1215 +20 10037661 . C . . END=10037663 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:90:32:0,90,1350 +20 10037664 . T . . END=10037666 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:81:28:0,81,1215 +20 10037667 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:77:31:0,77,902 +20 10037668 . C . . END=10037676 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:81:30:0,81,1215 +20 10037677 . A . . END=10037678 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:64:28:0,64,806 +20 10037679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:30:73:30:0,73,902 +20 10037680 . T . . END=10037688 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:81:29:0,81,887 +20 10037689 . T . . END=10037690 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:90:30:0,90,924 +20 10037691 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:87:29:0,87,907 +20 10037692 . C . . END=10037695 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:93:31:0,93,846 +20 10037696 . C . . END=10037699 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:99:33:0,99,982 +20 10037700 . A . . END=10037703 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:96:32:0,96,993 +20 10037704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:89:35:0,89,1033 +20 10037705 . C . . END=10037708 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:99:36:0,99,1162 +20 10037709 . A T, . . BaseQRankSum=0.120;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.934;RAW_MQandDP=378841,106;ReadPosRankSum=1.15 GT:AD:DP:GQ:PL:SB ./.:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 ./.:17,18,0:35:99:460,0,435,511,489,1000:6,11,4,14 +20 10037710 . A . . END=10037717 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:37:0,100,1131 +20 10037718 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:96:38:0,96,1024 +20 10037719 . G . . END=10037739 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:36:0,99,1191 +20 10037740 . C A, . . BaseQRankSum=-2.504e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.545 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:34,2,0:36:88:.:0,88,1080,102,1085,1099:15,19,2,0 +20 10037741 . A . . END=10037948 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:46:99:34:0,99,1115 +20 10037949 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:50:95:50:0,95,1374 +20 10037950 . G . . END=10037992 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:48:99:38:0,100,1203 +20 10037993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:88:39:0,88,1159 +20 10037994 . C . . END=10038068 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:37:0,99,1156 +20 10038069 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:90:38:0,90,1157 +20 10038070 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:38:0,102,1530 +20 10038071 . C . . END=10038083 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:90:33:0,90,1010 +20 10038084 . A . . END=10038145 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:99:33:0,99,1003 +20 10038146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:96:37:0,96,1115 +20 10038147 . C . . END=10038165 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:37:0,106,1137 +20 10038166 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:43:88:43:0,88,1209 +20 10038167 . T . . END=10038187 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:37:0,102,1332 +20 10038188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:88:40:0,88,1228 +20 10038189 . T . . END=10038210 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:99:38:0,102,1181 +20 10038211 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:82:39:0,82,1142 +20 10038212 . T . . END=10038216 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:37:0,108,1144 +20 10038217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:91:37:0,91,1001 +20 10038218 . A . . END=10038237 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:99:33:0,99,963 +20 10038238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:96:36:0,96,1117 +20 10038239 . A . . END=10038241 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038242 . C . . END=10038244 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:93:34:0,93,1395 +20 10038245 . G . . END=10038249 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:35:0,99,1485 +20 10038250 . A . . END=10038253 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:94:34:0,94,1079 +20 10038254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10038255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:90:35:0,90,1085 +20 10038256 . G . . END=10038264 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:34:0,99,1058 +20 10038265 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:93:36:0,93,1073 +20 10038266 . A . . END=10038273 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:35:0,99,1160 +20 10038274 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:93:36:0,93,1111 +20 10038275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:38:0,105,1575 +20 10038276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:85:38:0,85,1147 +20 10038277 . T . . END=10038287 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:75:36:0,75,1047 +20 10038289 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:88:35:0,88,1016 +20 10038290 . T . . END=10038292 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:91:34:0,91,1059 +20 10038293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:79:32:0,79,934 +20 10038294 . T . . END=10038298 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:90:33:0,90,1350 +20 10038299 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:83:33:0,83,992 +20 10038300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:32:0,90,1350 +20 10038301 . C . . END=10038304 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:81:30:0,81,1215 +20 10038305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:79:30:0,79,909 +20 10038306 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:81:30:0,81,1215 +20 10038307 . G . . END=10038308 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:75:30:0,75,1125 +20 10038309 . T . . END=10038314 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:31:0,84,1260 +20 10038315 . T . . END=10038316 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:93:33:0,93,1395 +20 10038317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:89:34:0,89,1071 +20 10038318 . T . . END=10038326 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:31:0,90,1350 +20 10038327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:75:33:0,75,982 +20 10038328 . A . . END=10038341 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:30:0,84,946 +20 10038342 . C . . END=10038344 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:29:74:29:0,74,761 +20 10038345 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:84:30:0,84,1260 +20 10038346 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:76:31:0,76,850 +20 10038347 . T . . END=10038348 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:84:30:0,84,1260 +20 10038349 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:67:31:0,67,902 +20 10038350 . T . . END=10038355 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:31:0,84,1260 +20 10038356 . A . . END=10038360 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:31:0,90,1350 +20 10038361 . A . . END=10038367 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:33:0,99,1035 +20 10038368 . C . . END=10038369 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:81:33:0,81,942 +20 10038370 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10038371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:85:34:0,85,1028 +20 10038372 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10038373 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:98:33:0,98,913 +20 10038374 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:61:33:0,61,918 +20 10038375 . C . . END=10038379 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:34:0,99,1038 +20 10038380 . T . . END=10038381 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:90:34:0,90,1350 +20 10038382 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:86:34:0,86,1048 +20 10038383 . G . . END=10038384 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:90:33:0,90,1350 +20 10038385 . A . . END=10038388 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038389 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:97:36:0,97,1094 +20 10038390 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:89:35:0,89,1051 +20 10038391 . A . . END=10038400 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:99:35:0,104,1056 +20 10038401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:41:94:41:0,94,1126 +20 10038402 . A . . END=10038407 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:41:0,114,1710 +20 10038408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:41:96:41:0,96,1280 +20 10038409 . T . . END=10038429 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:37:0,100,1116 +20 10038430 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:86:38:0,86,1122 +20 10038431 . T . . END=10038437 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:38:0,111,1181 +20 10038438 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:93:40:0,93,1195 +20 10038439 . T . . END=10038524 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:53:99:41:0,99,1277 +20 10038525 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:57:96:57:0,96,1440 +20 10038526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:60:99:60:0,99,1485 +20 10038527 . T . . END=10038533 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:60:90:60:0,90,1350 +20 10038534 . CTTGT C, . . BaseQRankSum=-1.936e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.962;RAW_MQandDP=213700,59;ReadPosRankSum=0.880 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038535 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038536 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038537 . G *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038538 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038539 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:57:0:57:0,0,101 +20 10038540 . T . . END=10038582 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:50:99:44:0,114,1304 +20 10038583 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:91:55:0,91,1806 ./.:50:99:44:0,114,1304 +20 10038584 . A . . END=10038639 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:50:99:44:0,114,1304 +20 10038640 . A C, . . BaseQRankSum=-1.630e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=162000,45;ReadPosRankSum=0.213 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:54:0,120,1800,120,1800,1800 ./.:23,22,0:45:99:.:579,0,582,648,648,1296:9,14,18,4 +20 10038641 . A . . END=10038835 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:55:99:38:0,99,1194 +20 10038836 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:82:41:0,82,1234 +20 10038837 . C . . END=10038849 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:39:0,111,1297 +20 10038850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:42:94:42:0,94,1268 +20 10038851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:42:99:42:0,117,1755 +20 10038852 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:88:41:0,88,1268 +20 10038853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,109,1277 +20 10038854 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:90:41:0,90,1272 +20 10038855 . T . . END=10038857 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:99:40:0,106,1260 +20 10038858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:86:40:0,86,1212 +20 10038859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,111,1665 +20 10038860 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:89:41:0,89,1251 +20 10038861 . G . . END=10038863 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:38:0,102,1530 +20 10038864 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:88:41:0,88,1102 +20 10038865 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,99,1195 +20 10038866 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:83:38:0,83,1140 +20 10038867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:39:0,102,1530 +20 10038868 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:84:39:0,84,1113 +20 10038869 . C . . END=10038876 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:37:99:36:0,105,1117 +20 10038877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:86:36:0,86,1073 +20 10038878 . T . . END=10038881 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:99:35:0,102,1105 +20 10038882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:81:36:0,81,1005 +20 10038883 . T . . END=10038890 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:37:99:36:0,102,1530 +20 10038891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:91:38:0,91,1114 +20 10038892 . A . . END=10038901 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:99:37:0,99,1144 +20 10038902 . T . . END=10038922 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:90:31:0,90,961 +20 10038923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:76:31:0,76,940 +20 10038924 . A . . END=10038925 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:90:31:0,90,999 +20 10038926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:87:31:0,87,1305 +20 10038927 . A . . END=10038930 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:33:90:32:0,90,1350 +20 10038931 . C . . END=10038936 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:35:99:34:0,99,1083 +20 10038937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:88:34:0,88,1000 +20 10038938 . T . . END=10038982 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:34:0,99,1019 +20 10038983 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:71:34:0,71,973 +20 10038984 . T . . END=10038993 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:99:37:0,99,1485 +20 10038994 . C T, . . BaseQRankSum=2.96;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-2.350e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:54:0,120,1800,120,1800,1800 ./.:19,19,0:38:99:.:524,0,452,581,509,1090:14,5,9,10 +20 10038995 . A . . END=10039370 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:52:99:38:0,100,1150 +20 10039371 . T G, . . BaseQRankSum=-1.667e+00;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=428400,119;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL:SB ./.:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 ./.:28,17,0:45:99:411,0,777,495,828,1324:10,18,9,8 +20 10039372 . T . . END=10039503 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:48:99:43:0,107,1307 +20 10039504 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:43:96:43:0,96,1239 +20 10039505 . A . . END=10039707 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:49:99:39:0,102,1236 +20 10039708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:92:41:0,92,1304 +20 10039709 . A . . END=10039832 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:49:99:41:0,104,1340 +20 10039833 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:53:97:53:0,97,1404 +20 10039834 . T . . END=10040087 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:50:99:40:0,100,1242 +20 10040088 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:94:46:0,94,1393 +20 10040089 . T . . END=10040420 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:53:99:43:0,100,1261 +20 10040421 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:74:44:0,74,1237 +20 10040422 . A . . END=10040436 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:43:99:40:0,99,1485 +20 10040437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:90:41:0,90,1200 +20 10040438 . A . . END=10040439 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:99:40:0,102,1530 +20 10040440 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:96:39:0,96,1162 +20 10040441 . T . . END=10040442 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:40:99:39:0,102,1530 +20 10040443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:36:96:36:0,96,1121 +20 10040444 . A . . END=10040484 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:99:34:0,100,1044 +20 10040485 . T . . END=10040486 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:95:41:0,95,1232 +20 10040487 . C . . END=10040512 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:99:39:0,108,1245 +20 10040513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:82:42:0,82,1240 +20 10040514 . T . . END=10040537 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:40:99:38:0,105,1109 +20 10040538 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:38:92:38:0,92,1161 +20 10040539 . T . . END=10040564 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:99:36:0,100,1047 +20 10040565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:86:41:0,86,1192 +20 10040566 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:99:42:0,120,1800 +20 10040567 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:96:42:0,96,1208 +20 10040568 . C . . END=10040578 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:99:39:0,99,1029 +20 10040579 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:95:46:0,95,1300 +20 10040580 . A . . END=10040634 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:99:42:0,111,1303 +20 10040635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:45:87:45:0,87,1333 +20 10040636 . T . . END=10040647 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:99:43:0,119,1332 +20 10040648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:44:83:44:0,83,1294 +20 10040649 . A . . END=10040666 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:99:43:0,104,1286 +20 10040667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:48:86:48:0,86,1339 +20 10040668 . C . . END=10040726 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:46:99:43:0,99,1271 +20 10040727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:82:42:0,82,1185 +20 10040728 . T . . END=10040735 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:99:40:0,99,1485 +20 10040736 . T . . END=10040739 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:90:36:0,90,1350 +20 10040740 . T . . END=10040742 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:41:84:40:0,84,1260 +20 10040743 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:43:78:43:0,78,1170 +20 10040744 . C . . END=10040762 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:42:60:36:0,60,900 +20 10040763 . T . . END=10040767 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:39:57:38:0,57,855 +20 10040768 . T . . END=10040770 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,120,1800 ./.:40:54:39:0,54,810 +20 10040771 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:60:81:0,60,2763 ./.:40:54:39:0,54,810 +20 10040772 . C CT,CTT, . . BaseQRankSum=0.374;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=358648,120;ReadPosRankSum=-4.270e-01 GT:AD:DP:GQ:PL:SB ./.:0,70,0,0:70:99:2033,210,0,2034,210,2034,2034,210,2034,2034:0,0,37,33 ./.:17,0,20,0:37:99:640,692,1318,0,626,563,692,1318,626,1318:7,10,10,10 +20 10040773 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:42:0:42:0,0,240 +20 10040774 . T . . END=10040778 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:44:87:44:0,87,1305 +20 10040779 . T . . END=10040780 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:44:90:44:0,90,1350 +20 10040781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:42:10:42:0,10,1085 +20 10040782 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:39:28:39:0,28,1031 +20 10040783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:42:77:42:0,77,1191 +20 10040784 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:40:68:40:0,68,1127 +20 10040785 . T . . END=10040792 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:41:81:39:0,81,1215 +20 10040793 . T . . END=10040798 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:41:72:38:0,72,1080 +20 10040799 . T . . END=10040805 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:40:66:38:0,66,990 +20 10040806 . T . . END=10040810 GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:39:57:38:0,57,855 +20 10040811 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:75:0,120,1800 ./.:41:60:41:0,60,900 +20 10040812 . AT A, . . BaseQRankSum=0.905;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=358099,122;ReadPosRankSum=0.031 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 ./.:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040813 . T *, . . DP=122 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 ./.:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:42:0:42:0,0,275 +20 10040815 . T . . END=10040820 GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:41:99:40:0,111,1665 +20 10040821 . T A,C, . . BaseQRankSum=-2.100e-02;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=347299,119;ReadPosRankSum=-3.470e-01 GT:AD:DP:GQ:PL:SB ./.:38,40,0,0:78:99:1200,0,1099,1314,1219,2533,1314,1219,2533,2533:20,18,21,19 ./.:39,0,1,0:40:90:0,117,1322,90,1295,1292,117,1322,1295,1322:17,22,0,1 +20 10040822 . A . . END=10040945 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:40:0,108,1209 +20 10040946 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:96:40:0,96,1140 +20 10040947 . T . . END=10040964 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:99:41:0,111,1193 +20 10040965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:86:42:0,86,1184 +20 10040966 . G . . END=10040999 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:99:38:0,105,1162 +20 10041000 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:73:37:0,73,978 +20 10041001 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:99:39:0,116,1109 +20 10041002 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:94:37:0,94,1076 +20 10041003 . G . . END=10041133 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:99:34:0,99,1068 +20 10041134 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:36:96:36:0,96,1086 +20 10041135 . C . . END=10041137 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:99:37:0,105,1575 +20 10041138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:36:96:36:0,96,1098 +20 10041139 . G . . END=10041201 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:35:0,101,1028 +20 10041202 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:98:41:0,98,1268 +20 10041203 . A . . END=10041213 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:99:36:0,103,1102 +20 10041214 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:38:98:38:0,98,1136 +20 10041215 . G . . END=10041244 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:99:37:0,100,1099 +20 10041245 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:43:98:43:0,98,1224 +20 10041246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:43:99:43:0,118,1316 +20 10041247 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:44:83:44:0,83,1191 +20 10041248 . A . . END=10041278 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:44:99:41:0,101,1215 +20 10041279 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:46:91:46:0,91,1306 +20 10041280 . G . . END=10041283 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:42:0,106,1272 +20 10041284 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:94:42:0,94,1249 +20 10041285 . T . . END=10041289 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:42:0,108,1620 +20 10041290 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:89:39:0,89,1138 +20 10041291 . T . . END=10041292 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:40:0,102,1530 +20 10041293 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:81:40:0,81,1107 +20 10041294 . A . . END=10041303 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:38:0,102,1530 +20 10041304 . C T, . . BaseQRankSum=3.22;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=362210,102;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL:SB ./.:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 ./.:18,15,0:33:99:391,0,405,445,450,895:8,10,7,8 +20 10041305 . G . . END=10041308 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:41:99:40:0,109,1141 +20 10041309 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:94:39:0,94,1146 +20 10041310 . A . . END=10041311 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:41:99:40:0,111,1665 +20 10041312 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:85:37:0,85,1109 +20 10041313 . G . . END=10041317 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:37:0,101,1165 +20 10041318 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:96:38:0,96,1136 +20 10041319 . G . . END=10041321 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:36:0,99,1485 +20 10041322 . T . . END=10041324 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:92:37:0,92,1121 +20 10041325 . G . . END=10041328 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:38:0,99,1196 +20 10041329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:89:39:0,89,1177 +20 10041330 . T . . END=10041350 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:35:0,99,1117 +20 10041351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:97:36:0,97,1109 +20 10041352 . G . . END=10041353 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,102,1048 +20 10041354 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:97:36:0,97,1085 +20 10041355 . T . . END=10041373 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:34:0,99,1056 +20 10041374 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:35:89:35:0,89,1029 +20 10041375 . T . . END=10041385 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,102,1037 +20 10041386 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:90:36:0,90,1064 +20 10041387 . C . . END=10041393 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:36:0,102,1166 +20 10041394 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:93:36:0,93,1077 +20 10041395 . C . . END=10041405 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:37:0,99,1167 +20 10041406 . G . . END=10041407 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:90:36:0,90,1350 +20 10041408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:68:36:0,68,1006 +20 10041409 . A . . END=10041413 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:87:34:0,87,1305 +20 10041414 . G . . END=10041417 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:90:30:0,90,935 +20 10041418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:73:33:0,73,935 +20 10041419 . A . . END=10041427 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:32:90:30:0,90,933 +20 10041428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:70:33:0,70,927 +20 10041429 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:84:33:0,84,945 +20 10041430 . T . . END=10041431 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:99:34:0,99,1485 +20 10041432 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:97:36:0,97,1104 +20 10041433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:36:0,105,1575 +20 10041434 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:79:36:0,79,1099 +20 10041435 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:37:0,105,1575 +20 10041436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:96:37:0,96,1090 +20 10041437 . A . . END=10041443 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:36:0,99,1141 +20 10041444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:96:39:0,96,1440 +20 10041445 . A . . END=10041449 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:39:0,99,1485 +20 10041450 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:61:38:0,61,1101 +20 10041451 . G . . END=10041458 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:35:99:33:0,99,1084 +20 10041459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:35:94:35:0,94,1111 +20 10041460 . A . . END=10041465 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:35:0,102,1011 +20 10041466 . C . . END=10041467 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:92:36:0,92,1098 +20 10041468 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:99:37:0,99,1485 +20 10041469 . A . . END=10041473 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:90:37:0,90,1350 +20 10041474 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:78:37:0,78,1071 +20 10041475 . C . . END=10041488 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:90:32:0,90,1350 +20 10041489 . T . . END=10041490 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:99:33:0,99,1105 +20 10041491 . G . . END=10041497 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:90:33:0,90,1350 +20 10041498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:88:33:0,88,1024 +20 10041499 . A . . END=10041504 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:32:90:31:0,90,1350 +20 10041505 . T . . END=10041515 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,99,1485 +20 10041516 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:92:36:0,92,1049 +20 10041517 . A . . END=10041547 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:35:0,101,1051 +20 10041548 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:94:37:0,94,1136 +20 10041549 . T . . END=10041574 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:35:0,102,1124 +20 10041575 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:96:36:0,96,1440 +20 10041576 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:38:0,102,1063 +20 10041577 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:37:98:37:0,98,1073 +20 10041578 . T . . END=10041581 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:37:0,99,1485 +20 10041582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:40:97:40:0,97,1173 +20 10041583 . C . . END=10041600 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:40:99:38:0,108,1620 +20 10041601 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:40:95:40:0,95,1196 +20 10041602 . A . . END=10041613 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:38:99:37:0,108,1620 +20 10041614 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:98:39:0,98,1125 +20 10041615 . G . . END=10041648 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:39:99:36:0,99,1079 +20 10041649 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:96:36:0,96,1098 +20 10041650 . A . . END=10041662 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:99:34:0,99,1485 +20 10041663 . G . . END=10041675 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:36:90:34:0,90,1350 +20 10041676 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:34:87:34:0,87,1305 +20 10041677 . A . . END=10041685 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:33:72:32:0,72,1080 +20 10041686 . A . . END=10041692 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:31:60:30:0,60,900 +20 10041693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:30:54:30:0,54,810 +20 10041694 . T . . END=10041695 GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:30:48:29:0,48,720 +20 10041696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:29:41:29:0,41,825 +20 10041697 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:48:0,120,1800 ./.:29:42:29:0,42,630 +20 10041698 . C CAT, . . BaseQRankSum=1.89;DP=100;ExcessHet=3.01;MQRankSum=0.844;RAW_MQandDP=361697,100;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB ./.:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 ./.:23,0,0:23:69:0,69,825,69,825,825:12,11,0,0 +20 10041699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:78:0,120,1800 ./.:29:39:29:0,39,585 +20 10041700 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:78:0,120,1800 ./.:28:36:28:0,36,540 +20 10041701 . A ATG,ATATG, . . BaseQRankSum=0.848;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=0.959;RAW_MQandDP=363190,103;ReadPosRankSum=1.12 GT:AD:DP:GQ:PL:SB ./.:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 ./.:8,0,11,0:19:99:291,346,691,0,266,568,349,679,452,810:3,5,6,5 +20 10041702 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:0:29:0,0,182 +20 10041703 . G . . END=10041707 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:69:28:0,69,1035 +20 10041708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:40:28:0,40,739 +20 10041709 . G . . END=10041710 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:73:28:0,73,834 +20 10041711 . G . . END=10041712 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:29:0,81,1215 +20 10041713 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:75:30:0,75,870 +20 10041714 . T . . END=10041715 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041716 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:58:30:0,58,839 +20 10041717 . G . . END=10041719 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041720 . T . . END=10041730 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:72:28:0,72,1001 +20 10041731 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:69:28:0,69,1035 +20 10041732 . T . . END=10041739 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:26:0,72,823 +20 10041740 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:54:25:0,54,568 +20 10041741 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:64:27:0,64,724 +20 10041742 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:78:26:0,78,806 +20 10041743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:58:26:0,58,766 +20 10041744 . T . . END=10041748 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:70:26:0,70,817 +20 10041749 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:68:27:0,68,807 +20 10041750 . T . . END=10041752 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:75:28:0,75,1125 +20 10041753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:55:29:0,55,856 +20 10041754 . T . . END=10041761 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:28:0,72,871 +20 10041762 . T . . END=10041766 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:65:27:0,65,763 +20 10041767 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:28:0,72,1080 +20 10041768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:69:27:0,69,760 +20 10041769 . C . . END=10041780 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:72:24:0,72,727 +20 10041781 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:68:28:0,68,781 +20 10041782 . A . . END=10041784 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:81:27:0,81,806 +20 10041785 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:63:27:0,63,721 +20 10041786 . C . . END=10041793 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:81:27:0,81,850 +20 10041794 . T . . END=10041795 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:78:28:0,78,1170 +20 10041796 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:58:28:0,58,815 +20 10041797 . T . . END=10041810 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:73:26:0,73,810 +20 10041811 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:66:26:0,66,794 +20 10041812 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:75:25:0,75,766 +20 10041813 . C . . END=10041815 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:81:27:0,81,842 +20 10041816 . C . . END=10041818 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:78:27:0,78,1170 +20 10041819 . C . . END=10041821 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041822 . C . . END=10041824 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:75:29:0,75,854 +20 10041825 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:81:31:0,81,1215 +20 10041826 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:60:31:0,60,908 +20 10041827 . G . . END=10041833 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:87:29:0,87,893 +20 10041834 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:75:29:0,75,914 +20 10041835 . G . . END=10041837 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:87:29:0,87,917 +20 10041838 . T . . END=10041839 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,907 +20 10041840 . T . . END=10041845 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:84:30:0,84,1260 +20 10041846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:66:32:0,66,904 +20 10041847 . T . . END=10041849 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:32:0,84,1260 +20 10041850 . G . . END=10041851 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:78:29:0,78,1170 +20 10041852 . C . . END=10041853 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:33:81:32:0,81,1215 +20 10041854 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:79:31:0,79,913 +20 10041855 . C . . END=10041870 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:81:29:0,81,937 +20 10041871 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:67:31:0,67,912 +20 10041872 . T . . END=10041879 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:87:29:0,87,903 +20 10041880 . A . . END=10041882 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,924 +20 10041883 . G . . END=10041890 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:29:0,81,918 +20 10041891 . C . . END=10041896 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:72:28:0,72,1080 +20 10041897 . T . . END=10041901 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:66:25:0,66,780 +20 10041902 . A . . END=10041903 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:72:26:0,72,1080 +20 10041904 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:65:27:0,65,796 +20 10041905 . C . . END=10041906 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:75:27:0,75,1125 +20 10041907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:56:26:0,56,754 +20 10041908 . G . . END=10041909 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:72:24:0,72,713 +20 10041910 . C . . END=10041914 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:69:25:0,69,1035 +20 10041915 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:72:27:0,72,1080 +20 10041916 . C . . END=10041918 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:69:26:0,69,1035 +20 10041919 . C . . END=10041922 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:27:0,72,1080 +20 10041923 . C . . END=10041928 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:81:27:0,81,851 +20 10041929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,911 +20 10041930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:64:29:0,64,893 +20 10041931 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,897 +20 10041932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:82:31:0,82,879 +20 10041933 . T . . END=10041935 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:90:31:0,90,1350 +20 10041936 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:32:0,84,993 +20 10041937 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:64:32:0,64,930 +20 10041938 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041939 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:75:32:0,75,981 +20 10041940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041941 . T . . END=10041942 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:70:31:0,70,914 +20 10041943 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:87:31:0,87,1305 +20 10041944 . C . . END=10041945 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041946 . G . . END=10041949 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:31:0,84,1260 +20 10041950 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:69:32:0,69,930 +20 10041951 . C . . END=10041952 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:33:93:32:0,93,982 +20 10041953 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:87:34:0,87,1305 +20 10041954 . A . . END=10041958 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:90:33:0,90,1041 +20 10041959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:77:34:0,77,960 +20 10041960 . T . . END=10041962 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:96:35:0,96,1440 +20 10041963 . G . . END=10041964 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:99:35:0,105,1033 +20 10041965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:82:35:0,82,1025 +20 10041966 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:99:35:0,102,1530 +20 10041967 . A . . END=10041968 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:92:35:0,92,943 +20 10041969 . A . . END=10041970 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:86:35:0,86,1059 +20 10041971 . G . . END=10041976 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:36:0,105,1575 +20 10041977 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:88:35:0,88,1044 +20 10041978 . C . . END=10041981 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:99:35:0,102,1104 +20 10041982 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:89:36:0,89,968 +20 10041983 . G . . END=10041986 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:35:0,105,1007 +20 10041987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:92:36:0,92,1072 +20 10041988 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:38:99:38:0,105,1575 +20 10041989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:92:36:0,92,1097 +20 10041990 . G . . END=10041992 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:35:0,105,1095 +20 10041993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:94:37:0,94,1023 +20 10041994 . T . . END=10041997 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:38:0,102,1530 +20 10041998 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:79:39:0,79,1123 +20 10041999 . A . . END=10042006 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:38:0,105,1164 +20 10042007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:38:92:38:0,92,1163 +20 10042008 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:39:0,114,1710 +20 10042009 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:80:39:0,80,1154 +20 10042010 . T . . END=10042147 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:48:99:39:0,105,1263 +20 10042148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:49:73:49:0,73,1442 +20 10042149 . A . . END=10042174 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:47:99:45:0,120,1800 +20 10042175 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:49:90:49:0,90,1419 +20 10042176 . A . . END=10042282 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:51:99:42:0,108,1271 +20 10042283 . C . . END=10042284 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:41:90:41:0,90,1159 +20 10042285 . G . . END=10042318 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:46:99:42:0,114,1290 +20 10042319 . C T, . . BaseQRankSum=1.66;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=381051,108;ReadPosRankSum=-8.950e-01 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 ./.:21,21,0:42:99:563,0,514,626,577,1203:8,13,12,9 +20 10042320 . C . . END=10042340 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:48:99:43:0,117,1755 +20 10042341 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:46:94:46:0,94,1335 +20 10042342 . T . . END=10042611 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:47:99:40:0,103,1161 +20 10042612 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:40:95:40:0,95,1165 +20 10042613 . T . . END=10042618 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:40:99:39:0,114,1216 +20 10042619 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:38:98:38:0,98,1143 +20 10042620 . C . . END=10042760 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:48:99:40:0,114,1288 +20 10042761 . A G, . . BaseQRankSum=-2.960e-01;ClippingRankSum=0.00;DP=143;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=514800,143;ReadPosRankSum=-7.100e-02 GT:AD:DP:GQ:PL:SB ./.:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 ./.:23,29,0:52:99:761,0,602,830,689,1519:13,10,14,15 +20 10042762 . G . . END=10042828 GT:DP:GQ:MIN_DP:PL ./.:90:99:78:0,120,1800 ./.:59:99:51:0,120,1800 +20 10042829 . A G, . . BaseQRankSum=-1.650e-01;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=480169,134;ReadPosRankSum=-8.090e-01 GT:AD:DP:GQ:PL:SB ./.:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 ./.:24,31,0:55:99:780,0,566,852,659,1511:14,10,17,14 +20 10042830 . C . . END=10042935 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:52:99:38:0,102,1111 +20 10042936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:40:87:40:0,87,1152 +20 10042937 . C . . END=10042942 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:99:38:0,102,1530 +20 10042943 . A . . END=10042946 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:93:39:0,93,1395 +20 10042947 . T . . END=10042948 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:99:39:0,99,1485 +20 10042949 . G . . END=10042955 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:38:93:33:0,93,1395 +20 10042956 . A . . END=10042958 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:35:99:35:0,99,1485 +20 10042959 . T . . END=10042962 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:35:94:32:0,94,1021 +20 10042963 . A . . END=10042966 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:36:99:34:0,99,1485 +20 10042967 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:36:74:36:0,74,1048 +20 10042968 . A . . END=10042980 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:43:99:36:0,108,1088 +20 10042981 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:43:96:43:0,96,1172 +20 10042982 . C . . END=10043001 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:42:99:40:0,109,1146 +20 10043002 . A T, . . BaseQRankSum=3.99;DP=126;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=309600,86;ReadPosRankSum=-3.500e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:48,38,0:86:99:.:1316,0,1659,1460,1773,3233:19,29,18,20 ./.:.:42:99:40:0,109,1146,109,1146,1146 +20 10043003 . C . . END=10043005 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:99:40:0,109,1146 +20 10043006 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:95:42:0,95,1202 +20 10043007 . T . . END=10043164 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:52:99:41:0,102,1381 +20 10043165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:78:42:0,78,1184 +20 10043166 . T . . END=10043185 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:36:0,99,1133 +20 10043186 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:96:37:0,96,1091 +20 10043187 . T . . END=10043190 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:38:0,105,1575 +20 10043191 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1099 +20 10043192 . G . . END=10043199 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:37:0,106,1093 +20 10043200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:87:39:0,87,1093 +20 10043201 . A . . END=10043207 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,102,1530 +20 10043208 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:96:37:0,96,1440 +20 10043209 . G . . END=10043211 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,99,1485 +20 10043212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:97:37:0,97,1116 +20 10043213 . A . . END=10043214 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,102,1530 +20 10043215 . G . . END=10043220 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:90:33:0,90,1099 +20 10043221 . T . . END=10043224 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:87:34:0,87,1305 +20 10043225 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:35:0,90,1350 +20 10043226 . G . . END=10043228 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:87:31:0,87,1305 +20 10043229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:32:0,90,1350 +20 10043230 . A . . END=10043233 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:87:31:0,87,1305 +20 10043234 . A . . END=10043239 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:30:0,90,904 +20 10043240 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:77:31:0,77,904 +20 10043241 . A . . END=10043243 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:31:0,90,1350 +20 10043244 . T . . END=10043261 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:34:0,99,994 +20 10043262 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:92:37:0,92,1063 +20 10043263 . T . . END=10043438 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:99:36:0,102,1190 +20 10043439 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:87:39:0,87,1121 +20 10043440 . G . . END=10043471 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:37:0,99,1129 +20 10043472 . T . . END=10043478 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:96:35:0,96,1440 +20 10043479 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:77:36:0,77,968 +20 10043480 . G . . END=10043491 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:32:0,90,1015 +20 10043492 . A . . END=10043498 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:99:33:0,99,1076 +20 10043499 . G . . END=10043501 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:92:36:0,92,1084 +20 10043502 . T . . END=10043503 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:37:0,102,1530 +20 10043504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1152 +20 10043505 . T . . END=10043513 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:43:99:40:0,111,1665 +20 10043514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:89:46:0,89,1301 +20 10043515 . G . . END=10043694 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:49:99:38:0,100,1170 +20 10043695 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:90:38:0,90,1163 +20 10043696 . A . . END=10043698 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:37:0,99,1485 +20 10043699 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1150 +20 10043700 . T . . END=10043702 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:99:36:0,99,1485 +20 10043703 . C . . END=10043719 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:32:0,90,1084 +20 10043720 . G . . END=10043724 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:33:0,99,1039 +20 10043725 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:96:34:0,96,1440 +20 10043726 . T . . END=10043728 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:87:32:0,87,1305 +20 10043729 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:90:34:0,90,1350 +20 10043730 . T . . END=10043732 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:80:34:0,80,973 +20 10043733 . T . . END=10043740 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:93:33:0,93,1395 +20 10043741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:71:33:0,71,1003 +20 10043742 . C . . END=10043748 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:90:33:0,90,1350 +20 10043749 . T . . END=10043751 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:99:36:0,99,1485 +20 10043752 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:95:36:0,95,1088 +20 10043753 . T . . END=10043757 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:99:33:0,99,1043 +20 10043758 . C . . END=10043759 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:91:32:0,91,986 +20 10043760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:34:0,99,1485 +20 10043761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:91:34:0,91,1068 +20 10043762 . A . . END=10043763 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:34:0,102,1065 +20 10043764 . C . . END=10043768 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:82:35:0,82,1022 +20 10043769 . C . . END=10043791 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:33:0,90,1035 +20 10043792 . A . . END=10043798 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:84:32:0,84,1026 +20 10043799 . A . . END=10043808 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:90:30:0,90,941 +20 10043809 . A . . END=10043813 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:84:31:0,84,1260 +20 10043814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:74:32:0,74,995 +20 10043815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:81:31:0,81,1215 +20 10043816 . A . . END=10043838 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:26:72:25:0,72,800 +20 10043839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:25:47:25:0,47,724 +20 10043840 . G . . END=10043844 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:25:72:25:0,72,784 +20 10043845 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:27:63:27:0,63,774 +20 10043846 . A . . END=10043847 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:28:78:28:0,78,1170 +20 10043848 . C . . END=10043850 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:81:29:0,81,1215 +20 10043851 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:72:29:0,72,884 +20 10043852 . G . . END=10043853 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:84:28:0,84,920 +20 10043854 . A . . END=10043855 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:93:32:0,93,1395 +20 10043856 . A . . END=10043870 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:35:0,101,1086 +20 10043871 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:80:37:0,80,1055 +20 10043872 . C . . END=10043879 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,99,1485 +20 10043880 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:96:36:0,96,1102 +20 10043881 . C . . END=10043892 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:38:0,105,1189 +20 10043893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:92:40:0,92,1246 +20 10043894 . T . . END=10043916 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:38:0,108,1257 +20 10043917 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:98:39:0,98,1176 +20 10043918 . T . . END=10044038 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:99:38:0,102,1145 +20 10044039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:44:97:44:0,97,1300 +20 10044040 . A . . END=10044172 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:44:99:36:0,99,1058 +20 10044173 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:95:39:0,95,1116 +20 10044174 . G . . END=10044248 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:35:0,102,1120 +20 10044249 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:79:37:0,79,1079 +20 10044250 . C . . END=10044251 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:36:0,102,1530 +20 10044252 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:91:36:0,91,998 +20 10044253 . T . . END=10044279 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:34:0,101,1028 +20 10044280 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:90:39:0,90,1175 +20 10044281 . G . . END=10044282 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:39:0,106,1216 +20 10044283 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:85:37:0,85,1113 +20 10044284 . G . . END=10044649 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:50:99:36:0,102,1126 +20 10044650 . A G, . . BaseQRankSum=-5.504e+00;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=194400,54;ReadPosRankSum=0.426 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:44:0,104,1655,104,1655,1655 ./.:24,30,0:54:99:.:652,0,625,724,714,1438:14,10,17,13 +20 10044651 . T . . END=10044848 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:48:99:39:0,105,1212 +20 10044849 . A G, . . DP=98;ExcessHet=3.01;RAW_MQandDP=209641,59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,59,0:59:99:.:2120,177,0,2120,177,2120:0,0,22,37 ./.:.:48:99:39:0,105,1212,105,1212,1212 +20 10044850 . C . . END=10045077 GT:DP:GQ:MIN_DP:PL ./.:69:99:56:0,120,1800 ./.:48:99:39:0,105,1212 +20 10045078 . G T, . . DP=120;ExcessHet=3.01;RAW_MQandDP=279389,81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,81,0:81:99:.:3300,244,0,3300,244,3300:0,0,37,44 ./.:.:48:99:39:0,105,1212,105,1212,1212 +20 10045079 . C . . END=10045351 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:48:99:39:0,105,1212 +20 10045352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:45:87:45:0,87,1221 +20 10045353 . C . . END=10045495 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:46:99:42:0,105,1253 +20 10045496 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:47:95:47:0,95,1238 +20 10045497 . G . . END=10045512 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:48:99:45:0,120,1800 +20 10045513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:50:84:50:0,84,1420 +20 10045514 . T . . END=10045533 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:51:99:47:0,118,1535 +20 10045534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:49:80:49:0,80,1383 +20 10045535 . C . . END=10045552 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:43:99:34:0,99,1462 +20 10045553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:90:36:0,90,1068 +20 10045554 . T . . END=10045555 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10045556 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:75:36:0,75,1069 +20 10045557 . A . . END=10045558 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:36:0,102,1530 +20 10045559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:35:84:35:0,84,1055 +20 10045560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:37:91:37:0,91,1079 +20 10045561 . C . . END=10045583 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:99:36:0,105,1120 +20 10045584 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:37:95:37:0,95,1123 +20 10045585 . C . . END=10045606 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:40:99:37:0,100,1139 +20 10045607 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:87:38:0,87,1161 +20 10045608 . A . . END=10045611 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:99:39:0,111,1665 +20 10045612 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:89:39:0,89,1172 +20 10045613 . C . . END=10045624 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:40:99:38:0,105,1575 +20 10045625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:94:42:0,94,1284 +20 10045626 . A . . END=10045628 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:99:42:0,105,1575 +20 10045629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:94:42:0,94,1218 +20 10045630 . C . . END=10045631 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:99:41:0,100,1233 +20 10045632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:94:41:0,94,1251 +20 10045633 . A . . END=10045634 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:99:40:0,99,1485 +20 10045635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:88:38:0,88,1131 +20 10045636 . A . . END=10045637 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:99:38:0,102,1530 +20 10045638 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:87:38:0,87,1124 +20 10045639 . A . . END=10045640 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:36:0,102,1530 +20 10045641 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:86:36:0,86,1060 +20 10045642 . G C, . . BaseQRankSum=-4.850e-01;ClippingRankSum=0.00;DP=112;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=398210,112;ReadPosRankSum=-3.380e-01 GT:AD:DP:GQ:PL:SB ./.:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 ./.:18,13,0:31:99:304,0,478,358,518,875:9,9,2,11 +20 10045643 . A . . END=10045644 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:99:37:0,99,1124 +20 10045645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:63:39:0,63,1070 +20 10045646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:80:38:0,80,1104 +20 10045647 . C . . END=10045648 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:40:0,108,1210 +20 10045649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:48:40:0,48,1101 +20 10045650 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:82:42:0,82,1176 +20 10045651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,104,1280 +20 10045652 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:80:43:0,80,1264 +20 10045653 . A . . END=10045654 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:71:42:0,71,1162 +20 10045655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:93:43:0,93,1256 +20 10045656 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:62:42:0,62,1091 +20 10045657 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:34:42:0,34,1066 +20 10045658 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:15:42:0,15,1044 +20 10045659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:85:40:0,85,1142 +20 10045660 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,115,1230 +20 10045661 . T . . END=10045662 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:91:42:0,91,1198 +20 10045663 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:62:43:0,62,1193 +20 10045664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,117,1755 +20 10045665 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:88:41:0,88,1213 +20 10045666 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:71:41:0,71,1132 +20 10045667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:88:41:0,88,1206 +20 10045668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:78:43:0,78,1247 +20 10045669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:61:44:0,61,1212 +20 10045670 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:82:44:0,82,1255 +20 10045671 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:91:44:0,91,1257 +20 10045672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,111,1286 +20 10045673 . T . . END=10045674 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:91:42:0,91,1269 +20 10045675 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:74:43:0,74,1224 +20 10045676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:94:42:0,94,1288 +20 10045677 . G . . END=10045678 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:74:40:0,74,1158 +20 10045679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:81:42:0,81,1230 +20 10045680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:96:43:0,96,1292 +20 10045681 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:69:43:0,69,1241 +20 10045682 . A . . END=10045683 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:94:43:0,94,1230 +20 10045684 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:99:44:0,120,1800 +20 10045685 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:89:41:0,89,1260 +20 10045686 . G . . END=10045688 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:42:0,99,1300 +20 10045689 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:77:46:0,77,1332 +20 10045690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:45:0,102,1390 +20 10045691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:75:46:0,75,1303 +20 10045692 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:46:0,104,1411 +20 10045693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:90:46:0,90,1325 +20 10045694 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:46:0,120,1800 +20 10045695 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:98:44:0,98,1283 +20 10045696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:45:0,102,1322 +20 10045697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:98:44:0,98,1285 +20 10045698 . C . . END=10045706 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:99:46:0,104,1330 +20 10045707 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:91:46:0,91,1309 +20 10045708 . A . . END=10045711 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:44:0,99,1267 +20 10045712 . A . . END=10045713 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:93:46:0,93,1343 +20 10045714 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:99:46:0,104,1361 +20 10045715 . T . . END=10045718 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:95:43:0,95,1282 +20 10045719 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:99:43:0,120,1800 +20 10045720 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:96:43:0,96,1324 +20 10045721 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:99:44:0,99,1356 +20 10045722 . T . . END=10045726 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:95:43:0,95,1249 +20 10045727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:52:44:0,52,1204 +20 10045728 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:97:44:0,97,1320 +20 10045729 . T . . END=10045730 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:45:0,101,1385 +20 10045731 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:91:45:0,91,1359 +20 10045732 . C . . END=10045734 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:43:0,102,1331 +20 10045735 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:71:45:0,71,1278 +20 10045736 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:99:44:0,99,1284 +20 10045737 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:89:45:0,89,1331 +20 10045738 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:99:42:0,113,1296 +20 10045739 . T . . END=10045740 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:92:42:0,92,1257 +20 10045741 . T . . END=10045742 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:99:42:0,120,1800 +20 10045743 . A . . END=10045744 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:42:93:42:0,93,1229 +20 10045745 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:99:41:0,120,1800 +20 10045746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:90:41:0,90,1240 +20 10045747 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:87:40:0,87,1214 +20 10045748 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:91:41:0,91,1263 +20 10045749 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:40:0,114,1710 +20 10045750 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:92:40:0,92,1170 +20 10045751 . G . . END=10045752 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:86:40:0,86,1185 +20 10045753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:40:0,114,1710 +20 10045754 . C . . END=10045755 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:67:39:0,67,1159 +20 10045756 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:87:40:0,87,1187 +20 10045757 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:91:41:0,91,1289 +20 10045758 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:99:41:0,105,1575 +20 10045759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:76:40:0,76,1150 +20 10045760 . C . . END=10045767 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:83:39:0,83,1169 +20 10045768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:64:38:0,64,1124 +20 10045769 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:38:79:38:0,79,1129 +20 10045770 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:99:39:0,99,1485 +20 10045771 . T . . END=10045773 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:84:39:0,84,1155 +20 10045774 . C . . END=10045804 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:41:99:36:0,103,1167 +20 10045805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:93:39:0,93,1154 +20 10045806 . A . . END=10045882 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:37:0,102,1167 +20 10045883 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:84:39:0,84,1149 +20 10045884 . T . . END=10045890 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:99:39:0,111,1665 +20 10045891 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:39:91:39:0,91,1141 +20 10045892 . T . . END=10045921 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:40:99:35:0,99,1120 +20 10045922 . G . . END=10045926 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:90:32:0,90,1350 +20 10045927 . G . . END=10045936 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:81:33:0,81,1023 +20 10045937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:63:32:0,63,889 +20 10045938 . C . . END=10045939 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:30:87:29:0,87,905 +20 10045940 . T . . END=10045955 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:31:0,90,968 +20 10045956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:84:34:0,84,1003 +20 10045957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:93:33:0,93,1395 +20 10045958 . A . . END=10045959 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:87:31:0,87,1305 +20 10045960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:78:34:0,78,1170 +20 10045961 . C . . END=10045968 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:35:81:31:0,81,1215 +20 10045969 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:32:0,90,1350 +20 10045970 . A . . END=10045971 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:87:32:0,87,1305 +20 10045972 . A . . END=10045973 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:34:90:34:0,90,1350 +20 10045974 . G . . END=10045989 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:81:30:0,81,1215 +20 10045990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:74:33:0,74,998 +20 10045991 . T . . END=10045992 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:84:33:0,84,1260 +20 10045993 . A . . END=10046011 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:30:0,90,961 +20 10046012 . C . . END=10046021 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:31:84:31:0,84,1260 +20 10046022 . G . . END=10046042 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:32:90:31:0,90,982 +20 10046043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:33:85:33:0,85,988 +20 10046044 . A . . END=10046121 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:34:0,99,1110 +20 10046122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:91:45:0,91,1326 +20 10046123 . A . . END=10046126 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:99:43:0,120,1800 +20 10046127 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:45:90:45:0,90,1156 +20 10046128 . A . . END=10046146 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:99:44:0,102,1456 +20 10046147 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:93:44:0,93,1395 +20 10046148 . G . . END=10046151 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:44:81:42:0,81,1215 +20 10046152 . A . . END=10046153 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:78:43:0,78,1170 +20 10046154 . G . . END=10046156 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:43:60:43:0,60,900 +20 10046157 . G . . END=10046162 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:46:54:41:0,54,810 +20 10046163 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:51:47:0,51,765 +20 10046164 . A . . END=10046167 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:47:45:46:0,45,675 +20 10046168 . A . . END=10046172 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:51:33:49:0,33,495 +20 10046173 . A . . END=10046174 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:50:27:50:0,27,405 +20 10046175 . A . . END=10046176 GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:48:18:47:0,18,270 +20 10046177 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:58:0,120,1800 ./.:50:15:50:0,15,225 +20 10046178 . AAGAAAGAAAG A, . . DP=110;ExcessHet=3.01;RAW_MQandDP=324745,110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046179 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046180 . G *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046181 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046182 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046183 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046184 . G *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046185 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046186 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046187 . A *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046188 . G *, . . DP=110 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046189 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:50:0:50:0,0,0 +20 10046190 . G . . END=10046197 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:48:99:45:0,100,1308 +20 10046198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:46:71:46:0,71,1310 +20 10046199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:99:45:0,100,1323 +20 10046200 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:43:94:43:0,94,1211 +20 10046201 . A . . END=10046202 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:82:43:0,82,1212 +20 10046203 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:99:45:0,100,1331 +20 10046204 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:96:44:0,96,1209 +20 10046205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:89:45:0,89,1297 +20 10046206 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:43:94:43:0,94,1237 +20 10046207 . A . . END=10046216 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:99:42:0,110,1221 +20 10046217 . G . . END=10046221 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:42:96:39:0,96,1440 +20 10046222 . A . . END=10046223 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:87:37:0,87,1305 +20 10046224 . A . . END=10046225 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:90:38:0,90,1350 +20 10046226 . A . . END=10046229 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:41:99:40:0,99,1485 +20 10046230 . A . . END=10046232 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:96:37:0,96,1132 +20 10046233 . A . . END=10046234 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,102,1530 +20 10046235 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:97:38:0,97,1099 +20 10046236 . A . . END=10046239 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:35:0,102,1530 +20 10046240 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:69:36:0,69,861 +20 10046241 . G . . END=10046245 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:90:36:0,90,1350 +20 10046246 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,99,1485 +20 10046247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:85:38:0,85,1066 +20 10046248 . A . . END=10046250 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,99,1485 +20 10046251 . G . . END=10046259 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:93:36:0,93,1084 +20 10046260 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046261 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:96:35:0,96,1440 +20 10046262 . A . . END=10046264 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046265 . G . . END=10046267 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:87:33:0,87,977 +20 10046268 . A . . END=10046269 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:93:36:0,93,1395 +20 10046270 . A . . END=10046277 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,99,1110 +20 10046278 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:84:37:0,84,1260 +20 10046279 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:71:35:0,71,923 +20 10046280 . A . . END=10046286 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:84:34:0,84,1072 +20 10046287 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:34:90:34:0,90,1350 +20 10046288 . A . . END=10046294 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:81:31:0,81,1215 +20 10046295 . G . . END=10046300 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:75:28:0,75,1125 +20 10046301 . A . . END=10046303 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:81:29:0,81,1215 +20 10046304 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:78:29:0,78,1170 +20 10046305 . A . . END=10046306 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:81:29:0,81,1215 +20 10046307 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:28:63:28:0,63,762 +20 10046308 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:27:47:27:0,47,676 +20 10046309 . A . . END=10046310 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:84:29:0,84,1260 +20 10046311 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:27:64:27:0,64,740 +20 10046312 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:85:32:0,85,981 +20 10046313 . A . . END=10046316 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:93:31:0,93,961 +20 10046317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:37:30:0,37,675 +20 10046318 . G . . END=10046323 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:84:29:0,84,787 +20 10046324 . A . . END=10046326 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:70:29:0,70,700 +20 10046327 . A . . END=10046329 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:81:30:0,81,1215 +20 10046330 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:77:30:0,77,790 +20 10046331 . A . . END=10046334 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:84:30:0,84,1260 +20 10046335 . A . . END=10046336 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:90:31:0,90,1350 +20 10046337 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:80:32:0,80,911 +20 10046338 . A . . END=10046340 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:90:31:0,90,864 +20 10046341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:33:71:33:0,71,799 +20 10046342 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046343 . G . . END=10046344 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:34:83:33:0,83,976 +20 10046345 . A . . END=10046346 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:34:0,99,1485 +20 10046347 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:80:35:0,80,988 +20 10046348 . G . . END=10046393 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:40:99:36:0,100,1064 +20 10046394 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:87:38:0,87,1082 +20 10046395 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:99:39:0,108,1620 +20 10046396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:86:39:0,86,1197 +20 10046397 . A . . END=10046403 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,99,1485 +20 10046404 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:97:38:0,97,1168 +20 10046405 . G . . END=10046411 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:37:0,99,1485 +20 10046412 . A . . END=10046420 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:92:36:0,92,1053 +20 10046421 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:37:0,99,1485 +20 10046422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:92:36:0,92,1036 +20 10046423 . A . . END=10046430 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:90:35:0,90,1054 +20 10046432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:82:36:0,82,1046 +20 10046433 . A . . END=10046435 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,105,1155 +20 10046436 . A . . END=10046437 GT:DP:GQ:MIN_DP:PL ./.:68:96:65:0,96,1440 ./.:38:99:37:0,105,1155 +20 10046438 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:96:65:0,96,1440 ./.:38:96:38:0,96,1184 +20 10046439 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:66:0,99,1485 ./.:40:99:38:0,108,1620 +20 10046440 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:93:66:0,93,1395 ./.:40:99:38:0,108,1620 +20 10046441 . C . . END=10046443 GT:DP:GQ:MIN_DP:PL ./.:62:87:54:0,87,1305 ./.:40:99:38:0,108,1620 +20 10046444 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:54:39:0,54,1348 ./.:40:99:38:0,108,1620 +20 10046445 . T . . END=10046448 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:40:99:38:0,108,1620 +20 10046449 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:39:87:39:0,87,1145 +20 10046450 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:72:34:0,72,1251 ./.:38:99:37:0,105,1575 +20 10046451 . C . . END=10046453 GT:DP:GQ:MIN_DP:PL ./.:33:84:32:0,84,1260 ./.:38:99:37:0,105,1575 +20 10046454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:87:31:0,87,1305 ./.:38:99:37:0,105,1575 +20 10046456 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046457 . C . . END=10046458 GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:38:99:37:0,105,1575 +20 10046459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046460 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:39:76:39:0,76,1134 +20 10046461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:42:99:39:0,99,1128 +20 10046462 . C . . END=10046475 GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:42:99:39:0,99,1128 +20 10046476 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:43:97:43:0,97,1215 +20 10046477 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:45:99:39:0,108,1306 +20 10046478 . T . . END=10046479 GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:45:99:39:0,108,1306 +20 10046480 . C . . END=10046483 GT:DP:GQ:MIN_DP:PL ./.:39:99:39:0,99,1485 ./.:45:99:39:0,108,1306 +20 10046484 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:96:38:0,96,1440 ./.:45:99:39:0,108,1306 +20 10046485 . G . . END=10046491 GT:DP:GQ:MIN_DP:PL ./.:39:99:36:0,100,1440 ./.:45:99:39:0,108,1306 +20 10046492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:82:38:0,82,1478 ./.:45:99:39:0,108,1306 +20 10046493 . T . . END=10046500 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:45:99:39:0,108,1306 +20 10046501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:40:96:40:0,96,1181 +20 10046502 . T . . END=10046512 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:39:99:37:0,104,1121 +20 10046513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:36:97:36:0,97,1119 +20 10046514 . A . . END=10046516 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:99:36:0,108,1023 +20 10046517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:90:37:0,90,1121 +20 10046518 . G . . END=10046530 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:39:99:37:0,105,1575 +20 10046531 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:38:84:38:0,84,1128 +20 10046532 . A . . END=10046536 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:99:35:0,99,1485 +20 10046537 . A G, . . BaseQRankSum=-3.909e+00;DP=92;ExcessHet=3.01;MQRankSum=0.395;RAW_MQandDP=169333,57;ReadPosRankSum=0.727 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:28,29,0:57:99:.:848,0,902,932,988,1920:13,15,10,19 ./.:.:37:99:35:0,99,1485,99,1485,1485 +20 10046538 . T . . END=10046547 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:99:35:0,99,1485 +20 10046548 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:35:96:35:0,96,1440 +20 10046549 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:99:37:0,99,1485 +20 10046550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:96:37:0,96,1070 +20 10046551 . C . . END=10046557 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:36:99:34:0,99,1485 +20 10046558 . T . . END=10046569 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:34:90:32:0,90,1350 +20 10046570 . T . . END=10046575 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:29:0,81,1215 +20 10046576 . C . . END=10046578 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:78:31:0,78,1170 +20 10046579 . A . . END=10046590 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:32:81:30:0,81,910 +20 10046591 . T . . END=10046592 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:33:90:32:0,90,1350 +20 10046593 . C . . END=10046598 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:30:0,81,1215 +20 10046599 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:30:79:30:0,79,913 +20 10046600 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:31:0,81,1215 +20 10046601 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:30:55:30:0,55,871 +20 10046602 . C . . END=10046620 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:72:28:0,72,852 +20 10046621 . T . . END=10046630 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:30:0,81,1215 +20 10046631 . A . . END=10046632 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:71:28:0,71,858 +20 10046633 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:87:29:0,87,927 +20 10046634 . A . . END=10046635 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:93:31:0,93,972 +20 10046636 . T . . . GT:DP:GQ:MIN_DP:PL ./.:44:92:44:0,92,1722 ./.:31:64:31:0,64,943 +20 10046637 . T . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:44:0,104,1719 ./.:31:90:30:0,90,952 +20 10046638 . C . . . GT:DP:GQ:MIN_DP:PL ./.:45:95:45:0,95,1751 ./.:31:90:30:0,90,952 +20 10046639 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:30:0,90,952 +20 10046640 . T . . END=10046641 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:62:31:0,62,939 +20 10046642 . A . . END=10046643 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10046644 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046645 . T . . END=10046646 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:87:33:0,87,1051 +20 10046647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10046648 . C . . END=10046652 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046653 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:36:0,90,995 +20 10046654 . C . . END=10046656 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:36:0,105,1575 +20 10046657 . C . . END=10046658 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:93:37:0,93,1160 +20 10046659 . G . . END=10046672 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,99,1185 +20 10046673 . C . . END=10046674 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:89:40:0,89,1179 +20 10046675 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:72:40:0,72,1157 +20 10046676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:87:40:0,87,1218 +20 10046677 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:52:39:0,52,1127 +20 10046678 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:83:39:0,83,1196 +20 10046679 . T . . END=10046681 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,114,1263 +20 10046682 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:85:39:0,85,1222 +20 10046683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,114,1710 +20 10046684 . C . . END=10046685 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:81:38:0,81,1116 +20 10046686 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:58:40:0,58,1166 +20 10046687 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:88:40:0,88,1269 +20 10046688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,114,1710 +20 10046689 . G . . END=10046691 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1176 +20 10046692 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:71:40:0,71,1154 +20 10046693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,111,1665 +20 10046694 . C . . END=10046695 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:87:40:0,87,1206 +20 10046696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:72:39:0,72,1141 +20 10046697 . C . . END=10046698 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:81:38:0,81,1137 +20 10046699 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:79:41:0,79,1195 +20 10046700 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:81:38:0,81,1167 +20 10046701 . C . . END=10046762 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:37:0,105,1164 +20 10046763 . T . . END=10046764 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:40:0,96,1440 +20 10046765 . C . . END=10046819 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:37:0,99,1128 +20 10046820 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:90:41:0,90,1162 +20 10046821 . A . . END=10046826 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,103,1090 +20 10046827 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:72:39:0,72,1026 +20 10046828 . T C, . . DP=75;ExcessHet=3.01;RAW_MQandDP=115200,32 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:0,32,0:32:96:.:993,96,0,993,96,993:0,0,17,15 +20 10046829 . T . . END=10046841 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,102,1098 +20 10046842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:83:37:0,83,1067 +20 10046843 . T . . END=10046850 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:93:35:0,93,1395 +20 10046851 . A . . END=10046852 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,102,1126 +20 10046853 . T . . END=10046856 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:36:0,96,1440 +20 10046857 . G . . END=10046858 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10046859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:96:36:0,96,1048 +20 10046860 . A . . END=10046862 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,99,1485 +20 10046863 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:96:39:0,96,1440 +20 10046864 . T . . END=10046874 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10046875 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:84:34:0,84,961 +20 10046876 . T . . END=10046880 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,961 +20 10046881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:89:34:0,89,934 +20 10046882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046883 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:80:33:0,80,979 +20 10046884 . C . . END=10046907 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:34:0,99,953 +20 10046908 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:98:37:0,98,1128 +20 10046909 . T . . END=10046911 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,102,1530 +20 10046912 . T . . END=10046915 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:36:0,96,1440 +20 10046916 . C . . END=10046917 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1530 +20 10046918 . G . . END=10046919 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:37:0,96,1084 +20 10046920 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:62:37:0,62,1033 +20 10046921 . A . . END=10046922 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:37:0,96,1044 +20 10046923 . C . . END=10046946 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:35:0,99,1123 +20 10046947 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:98:39:0,98,1151 +20 10046948 . T . . END=10046989 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:35:0,100,1097 +20 10046990 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:90:41:0,90,1185 +20 10046991 . A . . END=10047004 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:35:0,99,1485 +20 10047005 . A . . END=10047011 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:33:0,90,1002 +20 10047012 . A . . END=10047019 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:33:0,99,954 +20 10047020 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:86:35:0,86,1042 +20 10047021 . T . . END=10047023 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,102,1530 +20 10047024 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:93:36:0,93,1076 +20 10047025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,102,1530 +20 10047026 . C . . END=10047027 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:92:35:0,92,1066 +20 10047028 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:87:34:0,87,990 +20 10047029 . T . . END=10047037 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:92:34:0,92,1033 +20 10047038 . T C, . . BaseQRankSum=-1.461e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.254 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:11,20,0:31:99:.:553,0,276,586,336,922:6,5,12,8 +20 10047039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10047040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:67:34:0,67,999 +20 10047042 . A . . END=10047053 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047054 . T . . END=10047062 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:33:0,90,1075 +20 10047063 . A . . END=10047069 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:81:34:0,81,1215 +20 10047070 . G . . END=10047072 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:35:0,90,1350 +20 10047073 . T . . END=10047077 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047078 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:69:34:0,69,1066 +20 10047079 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047080 . A . . END=10047106 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:90:32:0,90,1110 +20 10047107 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:72:34:0,72,934 +20 10047108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:69:32:0,69,867 +20 10047109 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:80:32:0,80,901 +20 10047110 . C . . END=10047111 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:91:34:0,91,1027 +20 10047113 . T . . END=10047119 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,995 +20 10047120 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:89:36:0,89,1029 +20 10047121 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:94:35:0,94,1047 +20 10047122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:67:34:0,67,914 +20 10047123 . A . . END=10047125 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047126 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:86:35:0,86,900 +20 10047127 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:93:35:0,93,945 +20 10047128 . T . . END=10047132 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,1002 +20 10047133 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:96:32:0,96,1014 +20 10047134 . C . . END=10047136 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,99,1485 +20 10047137 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:80:35:0,80,1081 +20 10047138 . C . . END=10047139 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:91:32:0,91,983 +20 10047140 . T . . END=10047141 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,102,1021 +20 10047142 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:69:34:0,69,951 +20 10047143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,105,1074 +20 10047144 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:92:36:0,92,1046 +20 10047145 . C . . END=10047146 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,105,1017 +20 10047147 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:89:35:0,89,1033 +20 10047148 . C . . END=10047168 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:34:0,99,1065 +20 10047169 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:95:37:0,95,1083 +20 10047170 . C . . END=10047216 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:36:0,99,1149 +20 10047217 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:98:43:0,98,1236 +20 10047218 . T . . END=10047224 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:41:0,103,1232 +20 10047225 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:98:40:0,98,1212 +20 10047226 . A . . END=10047266 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,100,1127 +20 10047267 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:87:41:0,87,1168 +20 10047268 . C . . END=10047274 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,111,1665 +20 10047275 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:95:38:0,95,1129 +20 10047276 . T . . END=10047286 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,101,1142 +20 10047287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:39:0,93,1127 +20 10047288 . C . . END=10047291 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:40:0,111,1665 +20 10047292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:87:42:0,87,1146 +20 10047293 . T . . END=10047340 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:42:0,99,1294 +20 10047341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:83:42:0,83,1157 +20 10047342 . T . . END=10047403 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,100,1185 +20 10047404 . T . . END=10047406 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:92:41:0,92,1255 +20 10047407 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:88:41:0,88,1226 +20 10047408 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:41:0,111,1665 +20 10047409 . A . . END=10047414 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:82:39:0,82,1163 +20 10047415 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,111,1665 +20 10047416 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1204 +20 10047417 . T . . END=10047422 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:38:0,111,1665 +20 10047423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:39:0,93,1199 +20 10047424 . C . . END=10047434 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,103,1186 +20 10047435 . G A, . . BaseQRankSum=2.75;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=-5.400e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:20,21,0:41:99:.:529,0,417,588,479,1067:13,7,9,12 +20 10047436 . C . . END=10048125 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:51:99:39:0,99,1200 +20 10048126 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:97:42:0,97,1268 +20 10048127 . T . . END=10048134 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:34:0,99,1485 +20 10048135 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:35:0,90,1071 +20 10048136 . C . . END=10048153 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,100,1163 +20 10048154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:93:37:0,93,1138 +20 10048155 . A . . END=10048159 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1193 +20 10048160 . T . . END=10048169 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:91:35:0,91,1162 +20 10048170 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:84:35:0,84,1085 +20 10048171 . A . . END=10048172 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:93:34:0,93,1395 +20 10048173 . A . . END=10048174 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,99,1485 +20 10048175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:85:37:0,85,1174 +20 10048176 . T . . END=10048187 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,102,1530 +20 10048188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:98:38:0,98,1207 +20 10048189 . T . . END=10048191 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,108,1620 +20 10048192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:91:36:0,91,1058 +20 10048193 . C . . END=10048223 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,102,1194 +20 10048224 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:94:37:0,94,1138 +20 10048225 . C . . END=10048301 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:37:0,101,1181 +20 10048302 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:93:40:0,93,1203 +20 10048303 . A . . END=10048310 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,108,1166 +20 10048311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:96:39:0,96,1213 +20 10048312 . G . . END=10048314 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,108,1620 +20 10048315 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:41:0,96,1209 +20 10048316 . A . . END=10048327 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,99,1485 +20 10048328 . C . . END=10048329 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:94:38:0,94,1057 +20 10048330 . G . . END=10048331 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,105,1575 +20 10048332 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:79:36:0,79,1078 +20 10048333 . T . . END=10048334 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10048335 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:88:35:0,88,1045 +20 10048336 . T . . END=10048392 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:36:0,99,1243 +20 10048393 . C G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=158400,44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:78:99:43:.:.:0,101,1614,101,1614,1614 ./.:0,43,0:43:99:.:0|1:10048393_C_G:1609,132,0,1609,132,1609:0,0,23,20 +20 10048394 . G . . END=10048399 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:47:0,120,1800 +20 10048400 . C T, . . BaseQRankSum=2.20;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=1.71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:78:99:43:.:.:0,101,1614,101,1614,1614 ./.:24,21,0:45:99:.:0|1:10048393_C_G:467,0,468,537,530,1067:11,13,13,8 +20 10048401 . G . . END=10048541 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:38:0,102,1362 +20 10048542 . C . . END=10048555 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:93:35:0,93,1395 +20 10048556 . T . . END=10048558 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10048559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10048560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,102,1530 +20 10048561 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:78:38:0,78,1100 +20 10048562 . T . . END=10048577 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,99,1181 +20 10048578 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:88:39:0,88,1094 +20 10048579 . A . . END=10048594 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,100,1209 +20 10048595 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:98:44:0,98,1207 +20 10048596 . T . . END=10048602 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:46:99:44:0,120,1800 +20 10048603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:83:44:0,83,1209 +20 10048604 . C . . END=10048607 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:45:99:43:0,120,1800 +20 10048608 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:47:95:47:0,95,1276 +20 10048609 . T . . END=10048694 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:40:0,100,1169 +20 10048695 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:87:42:0,87,1232 +20 10048696 . C . . END=10048699 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:43:0,102,1530 +20 10048700 . A . . END=10048701 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:96:43:0,96,1440 +20 10048702 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:89:43:0,89,1279 +20 10048703 . T . . END=10048707 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:38:0,93,1395 +20 10048708 . A . . END=10048711 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10048712 . A . . END=10048715 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10048716 . T . . END=10048717 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10048718 . A . . END=10048723 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:34:0,90,1003 +20 10048724 . T . . END=10048725 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,99,1485 +20 10048726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:87:35:0,87,1305 +20 10048727 . T . . END=10048729 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:36:0,90,1350 +20 10048730 . A . . END=10048882 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:35:0,99,1043 +20 10048883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:41:0,96,1217 +20 10048884 . T . . END=10048958 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:35:0,99,1060 +20 10048959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:74:36:0,74,1064 +20 10048960 . G . . END=10048964 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:38:0,102,1530 +20 10048965 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:92:37:0,92,1078 +20 10048966 . T . . END=10048983 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:33:0,99,1009 +20 10048984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1120 +20 10048985 . G . . END=10048987 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,111,1665 +20 10048988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:97:38:0,97,1141 +20 10048989 . A . . END=10048994 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,103,1166 +20 10048995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:87:39:0,87,1171 +20 10048996 . C . . END=10048997 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,111,1665 +20 10048998 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:89:38:0,89,1130 +20 10048999 . A . . END=10049005 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1153 +20 10049006 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:94:37:0,94,1114 +20 10049007 . G . . END=10049011 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:34:0,102,1049 +20 10049012 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:97:36:0,97,1103 +20 10049013 . A . . END=10049015 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:33:0,99,1059 +20 10049016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10049017 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10049018 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:76:35:0,76,1041 +20 10049019 . T . . END=10049022 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,99,1485 +20 10049023 . G . . END=10049024 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:96:36:0,96,1440 +20 10049025 . C . . END=10049026 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:87:36:0,87,1305 +20 10049027 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:77:35:0,77,1060 +20 10049028 . T . . END=10049030 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:84:35:0,84,1260 +20 10049031 . T . . END=10049034 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:75:33:0,75,1125 +20 10049035 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:81:32:0,81,1215 +20 10049036 . T . . END=10049053 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:28:72:26:0,72,1080 +20 10049054 . C . . END=10049058 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:81:29:0,81,1215 +20 10049059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:62:30:0,62,902 +20 10049060 . G . . END=10049066 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049067 . T . . END=10049070 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:30:0,90,1017 +20 10049071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:64:30:0,64,960 +20 10049072 . A . . END=10049074 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049075 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:31:0,90,1350 +20 10049076 . A . . END=10049078 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:87:31:0,87,1305 +20 10049079 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:74:30:0,74,945 +20 10049080 . A . . END=10049081 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:30:0,81,1215 +20 10049082 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:70:30:0,70,948 +20 10049083 . T . . END=10049106 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:29:0,81,1215 +20 10049107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:90:30:0,90,972 +20 10049108 . C . . END=10049119 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:30:0,81,1215 +20 10049120 . A G, . . BaseQRankSum=0.571;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=-1.548e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:11,22,0:33:99:.:567,0,223,599,288,888:7,4,13,9 +20 10049121 . G . . END=10049123 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049124 . C . . END=10049126 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:31:0,90,977 +20 10049127 . G . . END=10049128 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:99:33:0,99,1028 +20 10049129 . G . . END=10049130 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:33:0,96,1440 +20 10049131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10049132 . T . . END=10049133 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:91:35:0,91,1081 +20 10049134 . C . . END=10049137 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:36:0,105,1575 +20 10049138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:84:36:0,84,1049 +20 10049139 . G . . END=10049167 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:34:0,102,1069 +20 10049168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:88:38:0,88,1145 +20 10049169 . G . . END=10049404 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:48:99:39:0,110,1306 +20 10049405 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:47:97:47:0,97,1378 +20 10049406 . C . . END=10049516 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:39:0,100,1197 +20 10049517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:94:42:0,94,1275 +20 10049518 . A . . END=10049528 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,100,1160 +20 10049529 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:93:40:0,93,1242 +20 10049530 . G . . END=10049538 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:41:0,106,1219 +20 10049539 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:94:43:0,94,1255 +20 10049540 . A . . END=10049541 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:42:0,109,1252 +20 10049542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:93:41:0,93,1220 +20 10049543 . T . . END=10049834 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:51:99:40:0,104,1115 +20 10049835 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:89:44:0,89,1278 +20 10049836 . A . . END=10050160 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:39:0,99,1204 +20 10050161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:75:68:0,75,2271 ./.:49:99:39:0,99,1204 +20 10050162 . C . . END=10050254 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:49:99:39:0,99,1204 +20 10050255 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:94:39:0,94,1149 +20 10050256 . A . . END=10050261 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:37:0,99,1485 +20 10050262 . C . . END=10050268 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:90:34:0,90,1099 +20 10050269 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10050270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10050271 . A . . END=10050275 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:36:0,99,1485 +20 10050276 . G . . END=10050278 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:36:0,93,1395 +20 10050279 . G . . END=10050298 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:34:0,102,1062 +20 10050299 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10050300 . C . . END=10050308 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:99:36:0,99,1485 +20 10050309 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:95:37:0,95,995 +20 10050310 . G . . END=10050321 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:99:36:0,99,1485 +20 10050322 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:81:36:0,81,1075 +20 10050323 . A . . END=10050325 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050326 . A . . END=10050335 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:34:0,93,1111 +20 10050336 . T . . END=10050340 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:33:0,99,1039 +20 10050341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:88:33:0,88,1022 +20 10050342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:99:33:0,99,1045 +20 10050343 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:80:35:0,80,1056 +20 10050344 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050345 . G . . END=10050346 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:96:36:0,96,1440 +20 10050347 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:88:37:0,88,1046 +20 10050348 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:96:37:0,96,1440 +20 10050349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:83:37:0,83,1091 +20 10050350 . A . . END=10050351 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:92:35:0,92,1081 +20 10050352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:83:37:0,83,1096 +20 10050353 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10050354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:35:0,86,1028 +20 10050355 . T . . END=10050356 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:93:37:0,93,1093 +20 10050357 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:84:36:0,84,1064 +20 10050358 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:90:34:0,90,1350 +20 10050359 . C . . END=10050360 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:34:0,86,1041 +20 10050361 . C . . END=10050368 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10050369 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:29:87:29:0,87,962 +20 10050370 . T . . END=10050371 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:93:31:0,93,1007 +20 10050372 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:30:89:30:0,89,885 +20 10050373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:76:31:0,76,907 +20 10050374 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:93:31:0,93,987 +20 10050375 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:30:68:30:0,68,839 +20 10050376 . C . . END=10050379 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:30:0,90,951 +20 10050380 . C . . END=10050381 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:84:31:0,84,1260 +20 10050382 . A . . END=10050383 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:73:31:0,73,902 +20 10050384 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:87:31:0,87,1305 +20 10050385 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:78:31:0,78,899 +20 10050386 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:90:32:0,90,1350 +20 10050387 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:76:32:0,76,946 +20 10050388 . T . . END=10050389 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:96:32:0,96,1046 +20 10050390 . C . . END=10050394 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:34:0,99,1059 +20 10050395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:87:34:0,87,1016 +20 10050396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:34:0,102,1089 +20 10050397 . C . . END=10050399 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10050400 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10050401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:72:34:0,72,1022 +20 10050402 . C . . END=10050403 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10050404 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:92:36:0,92,1065 +20 10050405 . T . . END=10050409 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050410 . C . . END=10050413 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:35:0,93,1177 +20 10050414 . C . . END=10050417 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:38:0,99,1485 +20 10050418 . A . . END=10050422 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:93:36:0,93,1138 +20 10050423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:75:36:0,75,1100 +20 10050424 . C . . END=10050429 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:90:33:0,90,1004 +20 10050430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:77:31:0,77,901 +20 10050431 . A . . END=10050432 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:31:0,90,1350 +20 10050433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:29:87:29:0,87,899 +20 10050434 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:31:0,90,1350 +20 10050435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:80:32:0,80,968 +20 10050436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10050437 . T . . END=10050459 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:34:0,99,1046 +20 10050460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:98:33:0,98,1035 +20 10050461 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:99:35:0,102,1530 +20 10050462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:35:0,86,1053 +20 10050463 . C . . END=10050627 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:99:34:0,99,1079 +20 10050628 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:42:92:42:0,92,1221 +20 10050629 . T . . END=10050666 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:43:99:38:0,102,1264 +20 10050667 . C T, . . DP=93;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:52:0,120,1800,120,1800,1800 ./.:0,38,0:38:99:.:1185,114,0,1185,114,1185:0,0,20,18 +20 10050668 . C . . END=10050672 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:40:99:37:0,108,1620 +20 10050673 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:81:38:0,81,1146 +20 10050674 . T . . END=10050704 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:36:0,101,1124 +20 10050705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:91:38:0,91,1206 +20 10050706 . T . . END=10050713 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:38:0,111,1665 +20 10050714 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:94:41:0,94,1250 +20 10050715 . T . . END=10050735 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:40:99:39:0,100,1161 +20 10050736 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:92:41:0,92,1193 +20 10050737 . C . . END=10050817 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:43:99:38:0,104,1173 +20 10050818 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:95:37:0,95,1094 +20 10050819 . C . . END=10050827 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:37:0,108,1162 +20 10050828 . T C, . . BaseQRankSum=-2.704e+00;DP=123;ExcessHet=3.01;MQRankSum=0.892;RAW_MQandDP=440041,123;ReadPosRankSum=-1.400e-01 GT:AD:DP:GQ:PL:SB ./.:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 ./.:0,36,0:36:99:1155,108,0,1155,108,1155:0,0,18,18 +20 10050829 . T . . END=10050888 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:38:0,99,1182 +20 10050889 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:86:39:0,86,1145 +20 10050890 . A . . END=10050926 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:40:99:37:0,102,1112 +20 10050927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:97:37:0,97,1104 +20 10050928 . T . . END=10050950 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:37:0,104,1177 +20 10050951 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:82:42:0,82,1145 +20 10050952 . T . . END=10051015 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:38:0,99,1144 +20 10051016 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:96:38:0,96,1118 +20 10051017 . G . . END=10051022 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:37:0,102,1530 +20 10051023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:84:39:0,84,1075 +20 10051024 . G . . END=10051038 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:40:99:37:0,99,1485 +20 10051039 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:88:35:0,88,1025 +20 10051040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:38:0,99,1485 +20 10051041 . T . . END=10051042 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:93:37:0,93,1395 +20 10051043 . C . . END=10051044 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:99:38:0,99,1485 +20 10051045 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:96:39:0,96,1440 +20 10051046 . A . . END=10051055 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:35:0,99,1485 +20 10051056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:34:0,90,999 +20 10051057 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:86:35:0,86,986 +20 10051058 . G . . END=10051059 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:99:33:0,99,976 +20 10051060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:68:34:0,68,966 +20 10051061 . G . . END=10051062 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:70:35:0,70,972 +20 10051063 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:93:35:0,93,1395 +20 10051064 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:99:37:0,99,1485 +20 10051065 . T . . END=10051071 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:93:36:0,93,1395 +20 10051072 . A . . END=10051075 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:36:99:35:0,99,1485 +20 10051076 . G . . END=10051082 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:34:0,90,1350 +20 10051083 . T . . END=10051091 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:84:31:0,84,1260 +20 10051092 . G . . END=10051093 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:90:31:0,90,1350 +20 10051094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:29:87:29:0,87,906 +20 10051095 . C . . END=10051097 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:90:30:0,90,942 +20 10051098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:80:32:0,80,960 +20 10051099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:76:31:0,76,928 +20 10051100 . T . . END=10051106 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:93:32:0,93,1395 +20 10051107 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:84:33:0,84,1023 +20 10051108 . A . . END=10051111 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:99:34:0,99,1485 +20 10051112 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:85:34:0,85,1062 +20 10051113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:96:34:0,96,1440 +20 10051114 . A . . END=10051117 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:99:33:0,99,1023 +20 10051118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:87:34:0,87,1013 +20 10051119 . A . . END=10051121 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:99:34:0,99,1485 +20 10051122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:96:34:0,96,1440 +20 10051123 . G . . END=10051134 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:36:99:33:0,99,1042 +20 10051135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:98:37:0,98,1130 +20 10051136 . A . . END=10051157 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:99:38:0,100,1188 +20 10051158 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:92:42:0,92,1274 +20 10051159 . C . . END=10051198 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:37:0,100,1086 +20 10051199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:64:42:0,64,1173 +20 10051200 . A . . END=10051212 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:46:99:44:0,113,1298 +20 10051213 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:47:94:47:0,94,1284 +20 10051214 . G . . END=10051330 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:44:99:39:0,106,1095 +20 10051331 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:72:42:0,72,1086 +20 10051332 . A . . END=10051366 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:34:0,102,1062 +20 10051367 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:82:37:0,82,1137 +20 10051368 . T . . END=10051375 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:99:37:0,99,1118 +20 10051376 . A G, . . BaseQRankSum=-3.580e-01;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-1.189e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:40:0,99,1485,99,1485,1485 ./.:18,20,0:38:99:.:514,0,430,567,490,1057:9,9,7,13 +20 10051377 . C . . END=10051378 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:38:0,102,1530 +20 10051379 . A . . END=10051392 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:93:32:0,93,1395 +20 10051393 . T . . END=10051394 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:87:33:0,87,930 +20 10051395 . C . . END=10051401 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:93:31:0,93,972 +20 10051402 . T . . END=10051413 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:81:30:0,81,1215 +20 10051414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:78:31:0,78,1170 +20 10051415 . G . . END=10051418 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:84:32:0,84,1260 +20 10051419 . C . . END=10051420 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:33:0,90,1350 +20 10051421 . G . . END=10051432 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:87:30:0,87,1305 +20 10051433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:90:30:0,90,968 +20 10051434 . C . . END=10051438 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:81:30:0,81,1215 +20 10051439 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:78:30:0,78,887 +20 10051440 . C . . END=10051442 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:81:30:0,81,1215 +20 10051443 . T . . END=10051445 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:90:32:0,90,1350 +20 10051446 . C . . END=10051447 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:81:31:0,81,1215 +20 10051448 . T C, . . BaseQRankSum=-5.010e-01;DP=101;ExcessHet=3.01;MQRankSum=-1.404e+00;RAW_MQandDP=358610,101;ReadPosRankSum=-7.050e-01 GT:AD:DP:GQ:PL:SB ./.:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 ./.:0,31,0:31:93:990,93,0,990,93,990:0,0,19,12 +20 10051449 . T . . END=10051452 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:81:31:0,81,1215 +20 10051453 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:79:32:0,79,949 +20 10051454 . C . . END=10051459 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:84:28:0,84,879 +20 10051460 . T . . END=10051463 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:29:76:29:0,76,858 +20 10051464 . C . . END=10051465 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:81:30:0,81,1215 +20 10051466 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:78:31:0,78,1170 +20 10051467 . A . . END=10051477 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:80:30:0,80,956 +20 10051478 . G . . END=10051479 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:90:32:0,90,1350 +20 10051480 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:30:33:0,30,880 +20 10051481 . C . . END=10051483 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:34:90:33:0,90,1350 +20 10051484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:74:32:0,74,965 +20 10051485 . T . . END=10051486 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:93:32:0,93,1395 +20 10051487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:85:32:0,85,986 +20 10051488 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:79:32:0,79,959 +20 10051489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:81:32:0,81,980 +20 10051490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:93:32:0,93,1395 +20 10051491 . A . . END=10051492 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:87:31:0,87,1305 +20 10051493 . A . . END=10051505 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:90:31:0,90,1047 +20 10051506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:72:32:0,72,956 +20 10051507 . G . . END=10051510 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:90:31:0,90,951 +20 10051511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:85:32:0,85,979 +20 10051512 . G . . END=10051518 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:93:31:0,93,970 +20 10051519 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:99:33:0,99,1016 +20 10051520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:88:33:0,88,1010 +20 10051521 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:96:32:0,96,940 +20 10051522 . A . . END=10051594 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:43:99:34:0,100,1078 +20 10051595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:88:44:0,88,1279 +20 10051596 . C . . END=10051694 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:46:99:44:0,120,1307 +20 10051695 . G A, . . BaseQRankSum=3.95;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=165600,46;ReadPosRankSum=-2.980e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:82:99:55:0,114,1800,114,1800,1800 ./.:21,25,0:46:99:.:667,0,425,729,500,1229:8,13,14,11 +20 10051696 . T . . END=10051744 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:42:99:38:0,105,1299 +20 10051745 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:90:35:0,90,1018 +20 10051746 . C . . END=10051750 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,102,1530 +20 10051751 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:94:36:0,94,1035 +20 10051752 . A . . END=10051760 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:99:37:0,99,1485 +20 10051761 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1395 +20 10051762 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:89:36:0,89,949 +20 10051763 . C . . END=10051765 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:93:33:0,93,1395 +20 10051766 . A . . END=10051982 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:47:99:36:0,99,1156 +20 10051983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:75:37:0,75,1079 +20 10051984 . T . . END=10052271 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:43:99:36:0,100,1147 +20 10052272 . C . . END=10052275 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:96:37:0,96,1440 +20 10052276 . T . . END=10052277 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:99:37:0,99,1485 +20 10052278 . A . . END=10052283 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1395 +20 10052284 . A . . END=10052434 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:42:99:35:0,99,1147 +20 10052435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:41:98:41:0,98,1177 +20 10052436 . C . . END=10052449 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:41:99:37:0,99,1209 +20 10052450 . A . . END=10052454 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:93:35:0,93,1076 +20 10052455 . A . . END=10052456 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:87:35:0,87,1077 +20 10052457 . C . . END=10052460 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:90:35:0,90,1350 +20 10052461 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:84:36:0,84,1064 +20 10052462 . A . . END=10052464 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:90:36:0,90,1350 +20 10052465 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:89:35:0,89,1043 +20 10052466 . T . . END=10052475 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:96:33:0,96,1440 +20 10052476 . A . . END=10052491 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:99:34:0,102,1053 +20 10052492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1074 +20 10052493 . T . . END=10052512 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:99:35:0,99,1099 +20 10052513 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:91:37:0,91,1091 +20 10052514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:79:37:0,79,1091 +20 10052515 . T . . END=10052522 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,108,1620 +20 10052523 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:98:39:0,98,1218 +20 10052524 . T . . END=10052532 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,101,1131 +20 10052533 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:97:39:0,97,1192 +20 10052534 . A . . END=10052547 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:38:0,105,1214 +20 10052548 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:98:40:0,98,1211 +20 10052549 . T . . END=10052551 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:99:35:0,102,1530 +20 10052552 . C . . END=10052553 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:95:37:0,95,1109 +20 10052554 . T . . END=10052571 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:38:0,99,1244 +20 10052572 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:86:40:0,86,1179 +20 10052573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:70:39:0,70,1057 +20 10052574 . T . . END=10052624 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:39:0,102,1151 +20 10052625 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:45:75:45:0,75,1200 +20 10052626 . A . . END=10052678 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:38:0,101,1173 +20 10052679 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:87:40:0,87,1154 +20 10052680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:40:0,117,1755 +20 10052681 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:89:40:0,89,1221 +20 10052682 . A . . END=10052687 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:39:0,102,1246 +20 10052688 . C A, . . BaseQRankSum=0.180;DP=116;ExcessHet=3.01;MQRankSum=0.870;RAW_MQandDP=274969,77;ReadPosRankSum=1.44 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,32,0:77:99:.:1091,0,1645,1226,1741,2967:27,18,16,16 ./.:.:44:99:39:0,102,1246,102,1246,1246 +20 10052689 . A . . END=10052714 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:39:0,102,1246 +20 10052715 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:81:39:0,81,1106 +20 10052716 . T . . END=10052717 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,111,1665 +20 10052718 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:36:0,90,1022 +20 10052719 . T . . END=10052729 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:35:0,99,1485 +20 10052730 . T . . END=10052742 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10052743 . C . . END=10052746 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:85:32:0,85,1000 +20 10052747 . G . . END=10052748 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:32:0,90,1350 +20 10052749 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:55:31:0,55,818 +20 10052750 . G . . END=10052757 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:31:0,81,957 +20 10052758 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:65:30:0,65,866 +20 10052759 . A . . END=10052768 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:80:29:0,80,969 +20 10052769 . A . . END=10052776 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:32:0,90,961 +20 10052777 . C . . END=10052780 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052781 . T . . END=10052785 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052786 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:82:34:0,82,1065 +20 10052787 . A . . END=10052790 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10052791 . T . . END=10052792 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:33:0,84,1025 +20 10052793 . G . . END=10052794 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:31:0,90,1350 +20 10052795 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:83:33:0,83,967 +20 10052796 . T . . END=10052801 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:32:0,93,1395 +20 10052802 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:87:29:0,87,922 +20 10052803 . A . . END=10052807 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:93:32:0,93,1395 +20 10052808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:34:0,84,1008 +20 10052809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,984 +20 10052811 . A . . END=10052814 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1036 +20 10052815 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:54:34:0,54,983 +20 10052816 . A . . END=10052821 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,102,1120 +20 10052822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:90:38:0,90,1163 +20 10052823 . T . . END=10052826 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,108,1620 +20 10052827 . T . . END=10052830 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:38:0,96,1440 +20 10052831 . A . . END=10052843 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:36:0,102,1117 +20 10052844 . A . . END=10052846 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:37:0,94,1079 +20 10052847 . A . . END=10052850 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:35:0,102,1530 +20 10052851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1128 +20 10052852 . G . . END=10052857 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,99,1485 +20 10052858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:37:0,90,1126 +20 10052859 . A . . END=10052874 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1011 +20 10052875 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:82:35:0,82,1003 +20 10052876 . A . . END=10052879 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,983 +20 10052880 . A . . END=10052881 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,973 +20 10052883 . A . . END=10052884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:83:34:0,83,993 +20 10052886 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,944 +20 10052887 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:82:33:0,82,959 +20 10052888 . T . . END=10052889 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1006 +20 10052890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:98:33:0,98,975 +20 10052891 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1027 +20 10052892 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1000 +20 10052893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1021 +20 10052894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:72:35:0,72,976 +20 10052895 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:93:35:0,93,1050 +20 10052896 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,108,1070 +20 10052897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:36:0,90,1044 +20 10052898 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,105,1575 +20 10052899 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:36:0,93,1041 +20 10052900 . A . . END=10052904 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1079 +20 10052905 . T . . END=10052908 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:36:0,96,1440 +20 10052909 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,99,1485 +20 10052910 . G . . END=10052914 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1395 +20 10052915 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10052916 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:92:36:0,92,1068 +20 10052917 . C . . END=10052918 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10052919 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1119 +20 10052920 . A . . END=10052922 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052923 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:83:33:0,83,996 +20 10052924 . C . . END=10052926 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052927 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1035 +20 10052928 . C . . END=10052929 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052930 . T . . END=10052931 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:81:33:0,81,996 +20 10052932 . A . . END=10052933 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:34:0,96,1440 +20 10052934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1024 +20 10052935 . T . . END=10052937 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:33:0,90,1052 +20 10052938 . C . . END=10052940 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:33:0,99,1056 +20 10052941 . C . . END=10052943 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:34:0,96,1440 +20 10052944 . T . . END=10052947 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1485 +20 10052948 . A . . END=10052955 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10052956 . A . . END=10052959 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:81:31:0,81,1215 +20 10052960 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:65:31:0,65,968 +20 10052961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10052962 . T . . END=10052963 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:29:0,78,1170 +20 10052964 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:31:0,81,1215 +20 10052965 . A . . END=10052991 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:27:75:25:0,75,807 +20 10052992 . A . . END=10052993 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:66:27:0,66,845 +20 10052994 . T . . END=10052995 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10052996 . G . . END=10053010 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:72:25:0,72,760 +20 10053011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:25:48:25:0,48,756 +20 10053012 . C . . END=10053020 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:26:72:24:0,72,750 +20 10053021 . A . . END=10053022 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:84:28:0,84,850 +20 10053023 . T G, . . BaseQRankSum=-1.451e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=-1.276e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:10,17,0:27:99:.:419,0,247,449,298,746:7,3,8,9 +20 10053024 . C . . END=10053025 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:84:29:0,84,1260 +20 10053026 . C . . END=10053029 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:90:31:0,90,1350 +20 10053030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,894 +20 10053031 . G . . END=10053039 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:30:0,90,908 +20 10053040 . C . . END=10053041 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:81:34:0,81,982 +20 10053042 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10053043 . C . . END=10053044 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,962 +20 10053045 . A . . END=10053049 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,1350 +20 10053050 . C . . END=10053051 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:32:0,87,887 +20 10053052 . T . . END=10053059 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:34:0,90,1350 +20 10053060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:77:35:0,77,1044 +20 10053061 . T . . END=10053063 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:34:0,96,1440 +20 10053064 . A . . END=10053082 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:33:0,99,1020 +20 10053083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:76:38:0,76,961 +20 10053084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1089 +20 10053085 . G . . END=10053086 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10053087 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1107 +20 10053088 . A . . END=10053089 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10053090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:38:0,94,1109 +20 10053091 . C . . END=10053093 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10053094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:71:34:0,71,1043 +20 10053095 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:88:36:0,88,1029 +20 10053096 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,981 +20 10053097 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,105,1056 +20 10053098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:86:36:0,86,1052 +20 10053099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,105,1071 +20 10053100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1071 +20 10053101 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:80:34:0,80,985 +20 10053102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:35:0,94,1013 +20 10053103 . C . . END=10053107 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,995 +20 10053108 . A . . END=10053110 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:34:0,94,1042 +20 10053111 . T . . END=10053113 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,100,1102 +20 10053114 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1112 +20 10053115 . A . . END=10053117 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:36:0,90,1086 +20 10053118 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:60:35:0,60,1023 +20 10053119 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:85:35:0,85,1098 +20 10053120 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:73:34:0,73,1027 +20 10053121 . C . . END=10053122 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1485 +20 10053123 . T . . END=10053124 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:84:36:0,84,1010 +20 10053125 . T . . END=10053126 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1041 +20 10053127 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,102,1530 +20 10053128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:70:35:0,70,1071 +20 10053129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10053130 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:72:35:0,72,1012 +20 10053131 . C . . END=10053132 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:34:0,90,1350 +20 10053133 . A . . END=10053134 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:84:36:0,84,1060 +20 10053135 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:37:0,96,1440 +20 10053136 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,99,1485 +20 10053137 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:86:38:0,86,1117 +20 10053138 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,105,1575 +20 10053139 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:78:36:0,78,1056 +20 10053140 . C . . END=10053141 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,102,1097 +20 10053142 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:62:38:0,62,1077 +20 10053143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:89:37:0,89,1106 +20 10053144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:92:38:0,92,1104 +20 10053145 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:37:0,81,1072 +20 10053146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,111,1665 +20 10053147 . T . . END=10053148 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:80:38:0,80,1111 +20 10053149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:95:39:0,95,1168 +20 10053150 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,102,1530 +20 10053151 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1136 +20 10053152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:92:38:0,92,1116 +20 10053153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:87:38:0,87,1119 +20 10053154 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:75:39:0,75,1062 +20 10053155 . A . . END=10053156 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:92:38:0,92,1109 +20 10053157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1112 +20 10053158 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:91:38:0,91,1141 +20 10053159 . A . . END=10053160 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:80:37:0,80,1085 +20 10053161 . A . . END=10053162 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1083 +20 10053163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:74:39:0,74,1116 +20 10053164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,102,1530 +20 10053165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:85:39:0,85,1087 +20 10053166 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:93:39:0,93,1109 +20 10053167 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:76:37:0,76,1045 +20 10053168 . A . . END=10053171 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:93:36:0,93,1395 +20 10053172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:83:36:0,83,1035 +20 10053173 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:75:37:0,75,1016 +20 10053174 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:80:36:0,80,1054 +20 10053175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:79:37:0,79,1081 +20 10053176 . T . . END=10053183 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1017 +20 10053184 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:62:32:0,62,904 +20 10053185 . G . . END=10053190 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:82:30:0,82,909 +20 10053191 . A . . END=10053201 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,961 +20 10053202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053203 . T . . END=10053206 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10053207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:75:34:0,75,975 +20 10053208 . T . . END=10053213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10053214 . C . . END=10053216 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,102,1058 +20 10053217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:86:35:0,86,997 +20 10053218 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,984 +20 10053219 . T . . END=10053220 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053221 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053222 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:82:34:0,82,1003 +20 10053223 . A . . END=10053226 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1395 +20 10053227 . C . . END=10053229 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10053230 . T . . END=10053233 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053234 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1022 +20 10053236 . G . . END=10053243 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1009 +20 10053244 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,983 +20 10053245 . A . . END=10053251 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,969 +20 10053252 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053253 . T . . END=10053261 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10053262 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053263 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:89:36:0,89,1072 +20 10053264 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053265 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:95:36:0,95,1098 +20 10053266 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10053267 . G A, . . BaseQRankSum=0.321;ClippingRankSum=0.00;DP=72;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.409 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:19,16,0:35:99:.:383,0,480,440,527,968:10,9,9,7 +20 10053268 . T . . END=10053275 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1077 +20 10053276 . A . . END=10053277 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10053278 . A . . END=10053280 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:87:33:0,87,1305 +20 10053281 . A . . END=10053288 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1019 +20 10053289 . C . . END=10053349 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:33:0,99,1008 +20 10053350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:92:43:0,92,1223 +20 10053351 . C . . END=10053366 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:41:0,117,1755 +20 10053367 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:70:45:0,70,1249 +20 10053368 . A . . END=10053394 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:45:0,120,1800 +20 10053395 . G C, . . DP=95;ExcessHet=3.01;RAW_MQandDP=212400,59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:0,57,0:57:99:.:1569,169,0,1569,169,1569:0,0,30,27 +20 10053396 . G . . END=10053463 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:58:99:49:0,120,1800 +20 10053464 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:94:50:0,94,1435 +20 10053465 . A . . END=10053708 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:99:39:0,103,1226 +20 10053709 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:91:47:0,91,1335 +20 10053710 . C . . END=10053890 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:52:99:45:0,110,1450 +20 10053891 . C G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=169200,47 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:0,47,0:47:99:.:1433,140,0,1433,140,1433:0,0,27,20 +20 10053892 . T . . END=10054050 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:99:42:0,99,1313 +20 10054051 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:56:50:0,56,1394 +20 10054052 . A . . END=10054116 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:40:0,111,1239 +20 10054117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:50:45:0,50,1211 +20 10054118 . A . . END=10054156 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:37:0,99,1278 +20 10054157 . T . . END=10054158 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1440 +20 10054159 . T . . END=10054181 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:34:0,99,1051 +20 10054182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1027 +20 10054183 . T . . END=10054185 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1036 +20 10054186 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1034 +20 10054187 . G . . END=10054200 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1077 +20 10054201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:89:35:0,89,1087 +20 10054202 . A . . END=10054204 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10054205 . T . . END=10054206 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:96:36:0,96,1164 +20 10054207 . G . . END=10054210 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1485 +20 10054211 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1010 +20 10054212 . G . . END=10054213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1042 +20 10054214 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:91:36:0,91,1111 +20 10054215 . C . . END=10054219 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,100,1123 +20 10054220 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1108 +20 10054221 . G . . END=10054222 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10054223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1123 +20 10054224 . T . . END=10054225 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10054226 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:37:0,96,1440 +20 10054227 . A . . END=10054229 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,99,1485 +20 10054230 . T . . END=10054233 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:93:38:0,93,1395 +20 10054234 . T . . END=10054238 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,99,1485 +20 10054239 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:38:0,96,1440 +20 10054240 . G . . END=10054241 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10054242 . T . . END=10054247 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:36:0,93,1072 +20 10054248 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:87:36:0,87,1057 +20 10054249 . A . . END=10054256 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:31:0,90,1350 +20 10054257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:78:32:0,78,955 +20 10054258 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:90:30:0,90,915 +20 10054259 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,886 +20 10054260 . T . . END=10054272 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:29:0,81,1215 +20 10054273 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,935 +20 10054274 . T . . END=10054280 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:81:30:0,81,1215 +20 10054281 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:65:29:0,65,881 +20 10054282 . T . . END=10054283 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:28:0,81,1215 +20 10054284 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:90:31:0,90,1350 +20 10054285 . T . . END=10054288 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:87:29:0,87,886 +20 10054289 . C . . END=10054292 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10054293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:77:31:0,77,929 +20 10054294 . T . . END=10054297 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:87:31:0,87,1305 +20 10054298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:65:31:0,65,936 +20 10054299 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:84:32:0,84,961 +20 10054300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10054301 . C . . END=10054303 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:80:32:0,80,983 +20 10054304 . A . . END=10054312 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10054313 . C . . END=10054470 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:33:0,99,1039 +20 10054471 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:91:43:0,91,1200 +20 10054472 . T . . END=10054503 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:37:0,100,1182 +20 10054504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:83:38:0,83,1156 +20 10054505 . A . . END=10054510 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:38:0,103,1188 +20 10054511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:90:41:0,90,1239 +20 10054512 . A . . END=10054552 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:34:0,99,973 +20 10054553 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:94:40:0,94,1236 +20 10054554 . T . . END=10054561 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:40:0,101,1254 +20 10054562 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:80:39:0,80,1101 +20 10054563 . T . . END=10054574 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:35:0,100,1023 +20 10054575 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:35:0,90,948 +20 10054576 . A . . END=10054578 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,108,1620 +20 10054579 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1126 +20 10054580 . T . . END=10054585 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1175 +20 10054586 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:94:39:0,94,1239 +20 10054587 . A . . END=10054597 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:40:0,100,1240 +20 10054598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:92:41:0,92,1227 +20 10054599 . T . . END=10054603 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:41:0,101,1286 +20 10054604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:94:42:0,94,1232 +20 10054605 . T . . END=10054615 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:41:0,117,1303 +20 10054616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:94:44:0,94,1232 +20 10054617 . T . . END=10054697 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:43:0,99,1238 +20 10054698 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:83:48:0,83,1358 +20 10054699 . T . . END=10055045 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:42:0,99,1279 +20 10055046 . A G, . . BaseQRankSum=-5.250e-01;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=1.50 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:18,21,0:39:99:.:530,0,438,584,501,1085:11,7,8,13 +20 10055047 . C . . END=10055130 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:40:0,100,1238 +20 10055131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:81:44:0,81,1224 +20 10055132 . A . . END=10055216 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:39:0,102,1149 +20 10055217 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:87:44:0,87,1313 +20 10055218 . T . . END=10055685 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:52:99:41:0,102,1271 +20 10055686 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:90:46:0,90,1339 +20 10055687 . C . . END=10055803 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:37:0,99,1170 +20 10055804 . A . . END=10055808 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:36:0,90,1350 +20 10055809 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:87:37:0,87,1305 +20 10055810 . A . . END=10055813 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:35:0,90,1350 +20 10055814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:87:34:0,87,1305 +20 10055815 . A . . END=10055816 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10055817 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:69:33:0,69,983 +20 10055818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:73:33:0,73,1019 +20 10055819 . A . . END=10055822 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:32:0,84,1260 +20 10055823 . G . . END=10055825 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,1170 +20 10055826 . A . . END=10055828 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:31:0,81,1215 +20 10055829 . T C, . . BaseQRankSum=-2.257e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.424 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:17,15,0:32:99:.:346,0,466,397,511,908:7,10,9,6 +20 10055830 . T . . END=10055839 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:34:0,90,1350 +20 10055840 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:73:35:0,73,1052 +20 10055841 . T . . END=10055843 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:35:0,90,1350 +20 10055844 . G . . END=10055848 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10055849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1158 +20 10055850 . G . . END=10055854 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10055855 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:89:38:0,89,1164 +20 10055856 . T . . END=10055860 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1073 +20 10055861 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:96:36:0,96,1100 +20 10055862 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,105,1575 +20 10055863 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:87:36:0,87,1094 +20 10055864 . A . . END=10055870 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1082 +20 10055871 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1116 +20 10055872 . C . . END=10055877 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,99,1144 +20 10055878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1124 +20 10055879 . A . . END=10055884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,111,1665 +20 10055885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:89:37:0,89,1172 +20 10055886 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,111,1665 +20 10055887 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1104 +20 10055888 . T . . END=10055889 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:39:0,114,1710 +20 10055890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:76:40:0,76,1165 +20 10055891 . C . . END=10055939 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:42:0,110,1331 +20 10055940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:85:45:0,85,1288 +20 10055941 . C . . END=10055963 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:99:44:0,114,1439 +20 10055964 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:90:46:0,90,1287 +20 10055965 . C . . END=10055979 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:41:0,101,1204 +20 10055980 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:90:44:0,90,1195 +20 10055981 . T . . END=10056003 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:38:0,101,1140 +20 10056004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:97:37:0,97,1064 +20 10056005 . A . . END=10056025 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:37:0,105,1234 +20 10056026 . C G, . . BaseQRankSum=1.78;ClippingRankSum=0.00;DP=74;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-7.530e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:18,19,0:37:99:.:464,0,405,518,461,980:5,13,10,9 +20 10056027 . G . . END=10056032 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:39:0,105,1575 +20 10056033 . G . . END=10056034 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:96:39:0,96,1440 +20 10056035 . A . . END=10056043 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:34:0,81,1215 +20 10056044 . A . . END=10056049 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:75:28:0,75,1125 +20 10056050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:69:28:0,69,847 +20 10056051 . A . . END=10056054 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:75:28:0,75,1125 +20 10056055 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:27:69:27:0,69,801 +20 10056056 . T . . END=10056062 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:75:27:0,75,1125 +20 10056063 . A . . END=10056064 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10056065 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:78:29:0,78,1170 +20 10056066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:81:30:0,81,1215 +20 10056067 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,1170 +20 10056068 . T . . END=10056071 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:32:0,81,1215 +20 10056072 . T . . END=10056073 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10056074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10056075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:34:0,93,1395 +20 10056076 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:86:35:0,86,1018 +20 10056077 . A . . END=10056097 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,943 +20 10056098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:67:32:0,67,913 +20 10056099 . C . . END=10056102 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,949 +20 10056103 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:83:32:0,83,927 +20 10056104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,986 +20 10056105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:88:35:0,88,1016 +20 10056106 . C . . END=10056107 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,102,1057 +20 10056108 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,927 +20 10056109 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,832 +20 10056110 . C . . END=10056111 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1099 +20 10056112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1022 +20 10056113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,117,1171 +20 10056114 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:89:39:0,89,1095 +20 10056115 . C . . END=10056124 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,102,1133 +20 10056125 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:83:39:0,83,1071 +20 10056126 . G . . END=10056130 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:36:0,102,1117 +20 10056131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1068 +20 10056132 . C . . END=10056133 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,105,1108 +20 10056134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1091 +20 10056135 . A . . END=10056139 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10056140 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1117 +20 10056141 . C . . END=10056149 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1530 +20 10056150 . A . . END=10056154 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:93:36:0,93,1112 +20 10056155 . A . . END=10056162 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:33:0,99,1043 +20 10056163 . A . . END=10056167 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10056168 . T . . END=10056172 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10056173 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1106 +20 10056174 . T . . END=10056192 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,102,1140 +20 10056193 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1190 +20 10056194 . G . . END=10056196 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,106,1167 +20 10056197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1164 +20 10056198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10056199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:88:38:0,88,1151 +20 10056200 . T . . END=10056201 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,108,1620 +20 10056202 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:88:39:0,88,1146 +20 10056203 . T . . END=10056207 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:38:0,111,1665 +20 10056208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1205 +20 10056209 . A . . END=10056210 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10056211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1217 +20 10056212 . T . . END=10056213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10056214 . A . . END=10056225 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:35:0,90,1051 +20 10056226 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10056227 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10056228 . A . . END=10056231 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:34:0,99,1485 +20 10056232 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:83:38:0,83,1119 +20 10056233 . A . . END=10056243 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,105,996 +20 10056244 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1083 +20 10056245 . G . . END=10056247 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10056248 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:84:39:0,84,1140 +20 10056249 . T . . END=10056264 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,108,1133 +20 10056265 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:97:40:0,97,1181 +20 10056266 . A . . END=10056330 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:38:0,108,1167 +20 10056331 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:98:41:0,98,1181 +20 10056332 . C . . END=10056362 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:38:0,103,1172 +20 10056363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:85:44:0,85,1243 +20 10056364 . C . . END=10056572 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:37:0,99,1191 +20 10056573 . G . . END=10056577 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:37:0,94,1146 +20 10056578 . T . . END=10056579 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10056580 . C . . END=10056581 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:37:0,96,1440 +20 10056582 . G . . END=10056583 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10056584 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:37:0,81,1159 +20 10056585 . A . . END=10056586 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,102,1530 +20 10056587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,971 +20 10056588 . T . . END=10056589 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,105,1575 +20 10056590 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1141 +20 10056591 . C . . END=10056592 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,108,1140 +20 10056593 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:92:36:0,92,1127 +20 10056594 . T . . END=10056606 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1101 +20 10056607 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,975 +20 10056608 . G . . END=10056612 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,99,1485 +20 10056613 . A . . END=10056615 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:34:0,96,1440 +20 10056616 . C . . END=10056628 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1018 +20 10056629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,1011 +20 10056630 . G . . END=10056634 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1009 +20 10056635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1036 +20 10056636 . A . . END=10056640 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1011 +20 10056641 . G . . END=10056645 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:31:0,91,957 +20 10056646 . T . . END=10056647 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1530 +20 10056648 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:93:37:0,93,1112 +20 10056649 . G . . END=10056711 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:37:0,99,1142 +20 10056712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:88:41:0,88,1173 +20 10056713 . T . . END=10056781 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:38:0,99,1150 +20 10056782 . A C, . . BaseQRankSum=-1.811e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=2.51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:74:99:36:.:.:0,99,1485,99,1485,1485 ./.:26,17,0:43:99:.:0|1:10056782_A_C:662,0,1496,740,1550,2290:16,10,7,10 +20 10056783 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:46:0,120,1800 +20 10056784 . A C, . . BaseQRankSum=-9.100e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=2.14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:74:99:36:.:.:0,99,1485,99,1485,1485 ./.:25,18,0:43:99:.:0|1:10056782_A_C:662,0,1496,740,1550,2290:15,10,8,10 +20 10056785 . A . . END=10056845 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:39:0,99,1146 +20 10056846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:86:40:0,86,1144 +20 10056847 . A . . END=10056852 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:39:0,111,1665 +20 10056853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:84:39:0,84,1136 +20 10056854 . A . . END=10056858 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:36:0,99,1122 +20 10056859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1081 +20 10056860 . G . . END=10056884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:36:0,102,1181 +20 10056885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:98:44:0,98,1322 +20 10056886 . T . . END=10056912 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:40:0,99,1219 +20 10056913 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:96:43:0,96,1292 +20 10056914 . A . . END=10057222 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:36:0,102,1288 +20 10057223 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:86:38:0,86,1070 +20 10057224 . A . . END=10057585 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:54:99:36:0,105,1038 +20 10057586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:38:0,96,1161 +20 10057587 . T . . END=10057675 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:36:0,99,1146 +20 10057676 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:97:42:0,97,1261 +20 10057677 . G . . END=10057918 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:99:40:0,101,1192 +20 10057919 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:90:41:0,90,1200 +20 10057920 . A . . END=10057921 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:40:0,105,1575 +20 10057922 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:94:42:0,94,1235 +20 10057923 . C . . END=10057933 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:36:0,102,1530 +20 10057934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:93:37:0,93,1065 +20 10057935 . G . . END=10057936 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10057937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:91:37:0,91,1102 +20 10057938 . C . . END=10057940 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,102,1530 +20 10057941 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:92:35:0,92,1048 +20 10057942 . A . . END=10057945 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,102,1035 +20 10057946 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:35:0,94,1051 +20 10057947 . C . . END=10057953 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10057954 . C . . END=10057955 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:35:0,90,1350 +20 10057956 . T . . END=10057957 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:81:34:0,81,1001 +20 10057958 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:76:33:0,76,1028 +20 10057959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10057960 . T . . END=10057974 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10057975 . G . . END=10057977 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10057978 . C . . END=10057993 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:33:0,90,1044 +20 10057994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:34:0,84,1031 +20 10057995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:34:0,93,1395 +20 10057996 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1017 +20 10057997 . A . . END=10057999 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10058000 . G . . END=10058003 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:31:0,84,1014 +20 10058004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:78:34:0,78,1170 +20 10058005 . T . . END=10058018 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:28:0,81,905 +20 10058019 . T . . END=10058021 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058022 . T C, . . BaseQRankSum=-2.346e+00;DP=99;ExcessHet=3.01;MQRankSum=0.466;RAW_MQandDP=237579,68;ReadPosRankSum=0.018 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,32,0:68:99:.:1004,0,1261,1112,1357,2469:16,20,13,19 ./.:.:32:90:31:0,90,1350,90,1350,1350 +20 10058023 . A . . END=10058028 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:67:34:0,67,982 +20 10058030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:71:33:0,71,991 +20 10058031 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10058032 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:77:32:0,77,909 +20 10058033 . C . . END=10058035 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10058036 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,1027 +20 10058037 . C . . END=10058039 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:96:32:0,96,1038 +20 10058040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:84:32:0,84,971 +20 10058041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:32:0,78,946 +20 10058042 . C . . END=10058049 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:32:0,90,977 +20 10058050 . T . . END=10058051 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:82:32:0,82,991 +20 10058052 . G . . END=10058053 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:95:32:0,95,965 +20 10058054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,102,1044 +20 10058055 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:77:34:0,77,961 +20 10058056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:92:35:0,92,1082 +20 10058057 . T . . END=10058060 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10058061 . G . . END=10058062 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1062 +20 10058063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,102,1530 +20 10058064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:78:38:0,78,977 +20 10058065 . A . . END=10058085 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,103,1086 +20 10058086 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:95:41:0,95,1134 +20 10058087 . A . . END=10058161 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:39:0,101,1175 +20 10058162 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:98:38:0,98,1129 +20 10058163 . G . . END=10058178 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,108,1127 +20 10058179 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:89:40:0,89,1088 +20 10058180 . C . . END=10058181 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,111,1665 +20 10058182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:86:39:0,86,1108 +20 10058183 . A . . END=10058184 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,111,1665 +20 10058185 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:96:39:0,96,1130 +20 10058186 . A . . END=10058189 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,111,1100 +20 10058190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:89:37:0,89,1023 +20 10058191 . G . . END=10058193 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,108,1072 +20 10058194 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:95:38:0,95,1021 +20 10058195 . G . . END=10058206 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:36:0,102,1530 +20 10058207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1068 +20 10058208 . A . . END=10058210 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,102,1530 +20 10058211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:81:38:0,81,978 +20 10058212 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1000 +20 10058213 . T . . END=10058236 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:38:0,102,1120 +20 10058237 . G . . END=10058239 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:37:0,96,1440 +20 10058240 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,99,1485 +20 10058241 . T . . END=10058243 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:36:0,96,1440 +20 10058244 . G . . END=10058245 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10058246 . G . . END=10058247 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:93:36:0,93,1395 +20 10058248 . G A, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=111600,31;ReadPosRankSum=-6.060e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:1,30,0:31:82:.:898,82,0,900,89,907:1,0,15,15 +20 10058249 . A . . END=10058251 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,1020 +20 10058252 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:86:33:0,86,880 +20 10058253 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10058254 . C . . END=10058257 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:87:31:0,87,1305 +20 10058258 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:70:29:0,70,882 +20 10058259 . C . . END=10058260 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058261 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:83:33:0,83,997 +20 10058262 . C . . END=10058263 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058264 . T . . END=10058265 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10058266 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:75:31:0,75,928 +20 10058267 . C . . END=10058271 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:30:0,87,1305 +20 10058272 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:78:31:0,78,968 +20 10058273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10058274 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:58:28:0,58,838 +20 10058275 . G . . END=10058286 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:29:0,81,1215 +20 10058287 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:76:29:0,76,881 +20 10058288 . C . . END=10058290 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:81:28:0,81,926 +20 10058291 . T . . END=10058295 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:90:30:0,90,929 +20 10058296 . T . . END=10058303 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:29:0,81,1215 +20 10058304 . T . . END=10058307 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:28:0,78,1170 +20 10058308 . C . . END=10058310 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:28:0,81,1215 +20 10058311 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:68:28:0,68,848 +20 10058312 . T . . END=10058314 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:81:27:0,81,828 +20 10058315 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:70:27:0,70,782 +20 10058316 . C . . END=10058328 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:27:0,81,781 +20 10058329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:55:29:0,55,866 +20 10058330 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:69:29:0,69,865 +20 10058331 . T . . END=10058335 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:29:0,81,1215 +20 10058336 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10058337 . C . . END=10058338 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:84:32:0,84,1260 +20 10058339 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:79:34:0,79,943 +20 10058340 . A . . END=10058343 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:83:32:0,83,918 +20 10058344 . T . . END=10058347 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:31:0,90,1350 +20 10058348 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10058349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10058350 . T . . END=10058351 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:86:33:0,86,955 +20 10058352 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:32:0,78,881 +20 10058353 . T . . END=10058355 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:84:31:0,84,1260 +20 10058356 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:78:33:0,78,1170 +20 10058357 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:32:0,81,939 +20 10058358 . T . . END=10058359 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:30:0,78,1170 +20 10058360 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:31:0,81,1215 +20 10058361 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:75:31:0,75,883 +20 10058362 . C . . END=10058364 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:87:33:0,87,1305 +20 10058365 . A . . END=10058367 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:90:30:0,90,859 +20 10058368 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10058369 . A . . END=10058373 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10058374 . G . . END=10058375 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:76:30:0,76,871 +20 10058376 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10058377 . T . . END=10058383 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:30:0,87,1305 +20 10058384 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,1350 +20 10058385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:31:0,81,900 +20 10058386 . C . . END=10058387 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:32:0,93,1395 +20 10058388 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:84:28:0,84,847 +20 10058389 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10058390 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,984 +20 10058391 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:77:33:0,77,918 +20 10058392 . C . . END=10058397 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:33:0,99,1049 +20 10058398 . A . . END=10058400 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:34:0,96,1440 +20 10058401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:86:34:0,86,994 +20 10058402 . C . . END=10058406 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:36:0,99,1182 +20 10058407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:68:38:0,68,1096 +20 10058408 . A . . END=10058412 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10058413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:94:35:0,94,1056 +20 10058414 . T . . END=10058430 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1100 +20 10058431 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1044 +20 10058432 . A . . END=10058440 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,99,1153 +20 10058441 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:95:36:0,95,1110 +20 10058442 . T . . END=10058455 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,105,1149 +20 10058456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:37:0,95,1086 +20 10058457 . C . . END=10058562 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:37:0,105,1178 +20 10058563 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:94:40:0,94,1158 +20 10058564 . A . . END=10058571 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:41:0,117,1755 +20 10058572 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:83:39:0,83,1096 +20 10058573 . C . . END=10058644 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:99:40:0,99,1167 +20 10058645 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:92:41:0,92,1209 +20 10058646 . C . . END=10058679 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:39:0,100,1193 +20 10058680 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:88:41:0,88,1181 +20 10058681 . A . . END=10058740 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:42:0,112,1413 +20 10058741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:98:44:0,98,1318 +20 10058742 . A . . END=10058823 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:99:38:0,105,1214 +20 10058824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1062 +20 10058825 . T . . END=10058826 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:40:0,114,1710 +20 10058827 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:91:41:0,91,1239 +20 10058828 . G . . END=10058902 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:40:0,105,1231 +20 10058903 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:90:41:0,90,1222 +20 10058904 . A . . END=10058908 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:39:0,102,1138 +20 10058909 . T . . END=10058910 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:96:40:0,96,1440 +20 10058911 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:41:0,99,1485 +20 10058912 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:96:41:0,96,1440 +20 10058913 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:40:0,99,1485 +20 10058914 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:86:40:0,86,1174 +20 10058915 . A . . END=10058924 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:36:0,108,1195 +20 10058925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:84:37:0,84,1151 +20 10058926 . T . . END=10058931 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,108,1174 +20 10058932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:96:39:0,96,1195 +20 10058933 . T . . END=10058937 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:40:0,103,1241 +20 10058938 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:85:41:0,85,1175 +20 10058939 . C . . END=10058956 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:38:0,101,1225 +20 10058957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:97:38:0,97,1142 +20 10058958 . C . . END=10058974 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:39:0,103,1194 +20 10058975 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:90:39:0,90,1141 +20 10058976 . T . . END=10058980 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,99,1485 +20 10058981 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:85:38:0,85,1090 +20 10058982 . A . . END=10058987 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:33:0,93,1395 +20 10058988 . T . . END=10058990 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:82:31:0,82,971 +20 10058991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:74:34:0,74,962 +20 10058992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:34:0,84,1260 +20 10058993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:62:33:0,62,920 +20 10058994 . C . . END=10058995 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:78:31:0,78,1170 +20 10058996 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:67:32:0,67,925 +20 10058997 . A . . END=10059001 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:78:29:0,78,1170 +20 10059002 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059003 . G . . END=10059008 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:27:0,75,1125 +20 10059009 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:58:27:0,58,763 +20 10059010 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:59:30:0,59,811 +20 10059011 . A . . END=10059014 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:27:0,81,833 +20 10059015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:50:27:0,50,797 +20 10059016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:84:28:0,84,863 +20 10059017 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:72:28:0,72,834 +20 10059018 . C . . END=10059024 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:27:0,81,848 +20 10059025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10059026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:79:33:0,79,943 +20 10059027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:66:33:0,66,895 +20 10059028 . T . . END=10059029 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:33:0,96,1440 +20 10059030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:85:34:0,85,1010 +20 10059031 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:70:35:0,70,985 +20 10059032 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1395 +20 10059033 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:72:35:0,72,948 +20 10059034 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:85:38:0,85,1017 +20 10059035 . C . . END=10059040 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10059041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1053 +20 10059042 . C . . END=10059050 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,102,1068 +20 10059051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:79:37:0,79,965 +20 10059052 . G . . END=10059055 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,102,1031 +20 10059056 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1075 +20 10059057 . T . . END=10059065 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:35:0,99,1485 +20 10059066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1036 +20 10059067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:99:33:0,99,976 +20 10059068 . C . . END=10059076 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059077 . C . . END=10059078 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1305 +20 10059079 . T . . END=10059080 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059081 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1305 +20 10059082 . C . . END=10059087 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:32:0,90,1350 +20 10059088 . C . . END=10059089 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10059090 . C . . END=10059092 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:32:0,81,973 +20 10059094 . A . . END=10059095 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:32:0,93,1395 +20 10059096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:77:32:0,77,950 +20 10059097 . G . . END=10059099 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:93:31:0,93,981 +20 10059100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:75:31:0,75,916 +20 10059101 . T . . END=10059105 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,975 +20 10059106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:84:32:0,84,941 +20 10059107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059108 . A . . END=10059110 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059111 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:35:0,93,1096 +20 10059112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10059113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,1016 +20 10059114 . T . . END=10059116 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:96:33:0,96,1440 +20 10059117 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:85:33:0,85,1021 +20 10059118 . G . . END=10059121 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,1395 +20 10059122 . T . . END=10059134 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,102,1530 +20 10059135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:97:37:0,97,1131 +20 10059136 . T . . END=10059142 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:36:0,102,1530 +20 10059143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1107 +20 10059144 . C . . END=10059147 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:34:0,102,1105 +20 10059148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:94:36:0,94,1118 +20 10059149 . A . . END=10059151 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059152 . A . . END=10059158 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:34:0,96,1440 +20 10059159 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:36:0,102,1530 +20 10059160 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:36:0,93,1079 +20 10059161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059162 . T . . END=10059163 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:34:0,96,1440 +20 10059164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059165 . G . . END=10059170 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:91:34:0,91,1055 +20 10059171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059172 . T . . END=10059174 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,1004 +20 10059175 . G . . END=10059176 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:84:32:0,84,1260 +20 10059177 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:90:35:0,90,1350 +20 10059178 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1305 +20 10059179 . T . . END=10059185 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:32:0,90,1350 +20 10059186 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:79:32:0,79,940 +20 10059187 . C . . END=10059188 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10059189 . T . . END=10059190 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:81:32:0,81,908 +20 10059191 . G . . END=10059196 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,952 +20 10059197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:83:32:0,83,978 +20 10059198 . C . . END=10059200 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1046 +20 10059201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:83:33:0,83,1003 +20 10059202 . T . . END=10059212 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,974 +20 10059213 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:32:0,80,984 +20 10059214 . T . . END=10059216 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:33:0,96,1440 +20 10059217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:86:34:0,86,1020 +20 10059218 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:34:0,96,1440 +20 10059219 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:85:34:0,85,991 +20 10059220 . C . . END=10059226 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059227 . A . . END=10059236 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:31:0,80,957 +20 10059237 . A . . END=10059246 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:30:0,90,872 +20 10059247 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10059248 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10059249 . T . . END=10059258 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:31:0,80,936 +20 10059259 . G . . END=10059264 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:72:30:0,72,855 +20 10059265 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:57:30:0,57,817 +20 10059266 . C . . END=10059268 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:72:31:0,72,1080 +20 10059269 . A . . END=10059271 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:69:26:0,69,1035 +20 10059272 . C . . END=10059273 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:72:27:0,72,1080 +20 10059274 . G . . END=10059275 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:63:27:0,63,786 +20 10059276 . A . . END=10059281 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:72:26:0,72,1080 +20 10059282 . C . . END=10059286 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:81:27:0,81,852 +20 10059287 . C . . END=10059296 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:78:27:0,78,1170 +20 10059297 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:81:27:0,81,877 +20 10059298 . C . . END=10059299 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:78:27:0,78,1170 +20 10059300 . T . . END=10059306 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:82:29:0,82,907 +20 10059307 . C . . END=10059317 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:90:30:0,90,917 +20 10059318 . G . . END=10059333 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059334 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:74:30:0,74,894 +20 10059335 . C . . END=10059339 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:28:0,81,1215 +20 10059340 . C . . END=10059345 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:71:28:0,71,832 +20 10059346 . T . . END=10059348 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059349 . G . . END=10059353 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:28:0,75,1125 +20 10059354 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:30:0,81,1215 +20 10059355 . G . . END=10059365 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:75:26:0,75,819 +20 10059366 . C . . END=10059376 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:29:81:27:0,81,827 +20 10059377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,1350 +20 10059378 . A . . END=10059379 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059380 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059381 . C . . END=10059387 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059388 . G . . END=10059395 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10059396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:89:34:0,89,1051 +20 10059397 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10059398 . A . . END=10059400 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:96:33:0,96,1440 +20 10059401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1030 +20 10059402 . G . . END=10059412 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:34:0,93,1048 +20 10059413 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:88:35:0,88,1061 +20 10059414 . T . . END=10059428 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:30:0,90,933 +20 10059429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:83:34:0,83,926 +20 10059430 . C . . END=10059435 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,102,1051 +20 10059436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1079 +20 10059437 . C . . END=10059442 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:36:0,99,1075 +20 10059443 . T . . END=10059449 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:35:0,96,1440 +20 10059450 . G . . END=10059454 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1071 +20 10059455 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:96:32:0,96,945 +20 10059456 . C . . END=10059461 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:36:0,105,998 +20 10059462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:91:36:0,91,1086 +20 10059463 . G . . END=10059477 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:35:0,105,1076 +20 10059478 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:96:37:0,96,1071 +20 10059479 . T . . END=10059484 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,111,1134 +20 10059485 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:80:38:0,80,1050 +20 10059486 . T . . END=10059490 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:36:0,99,1110 +20 10059491 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1054 +20 10059492 . G . . END=10059497 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,103,1113 +20 10059498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:91:40:0,91,1157 +20 10059499 . A . . END=10059507 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:37:0,109,1135 +20 10059508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:93:40:0,93,1167 +20 10059509 . A . . END=10059542 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:35:0,99,1133 +20 10059543 . A . . END=10059557 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:90:32:0,90,1350 +20 10059558 . G . . END=10059560 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10059561 . G . . END=10059563 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,985 +20 10059564 . G . . END=10059568 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,102,1070 +20 10059569 . C . . END=10059573 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:34:0,90,1032 +20 10059574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:34:0,84,976 +20 10059575 . C . . END=10059582 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:33:0,90,1350 +20 10059583 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,102,1530 +20 10059584 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:97:36:0,97,1098 +20 10059585 . C . . END=10059603 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:34:0,99,1043 +20 10059604 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:74:36:0,74,1023 +20 10059605 . C . . END=10059644 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:36:0,99,1135 +20 10059645 . T . . END=10059646 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1440 +20 10059647 . C . . END=10059652 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10059653 . G . . END=10059655 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:33:0,96,1440 +20 10059656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,1012 +20 10059657 . G . . END=10059672 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:31:0,93,1010 +20 10059673 . T . . END=10059693 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:29:0,81,908 +20 10059694 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:30:0,78,931 +20 10059695 . G . . END=10059696 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:30:0,87,1305 +20 10059697 . A . . END=10059700 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10059701 . T . . END=10059708 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:90:31:0,90,1350 +20 10059710 . G . . END=10059712 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059713 . C . . END=10059724 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:32:0,90,1034 +20 10059725 . G . . END=10059736 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:81:32:0,81,1215 +20 10059737 . G . . END=10059739 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:32:0,90,1350 +20 10059740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:87:31:0,87,1305 +20 10059741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:76:32:0,76,992 +20 10059742 . T . . END=10059745 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,1350 +20 10059746 . A . . END=10059748 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:81:31:0,81,1215 +20 10059749 . C . . END=10059754 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:75:30:0,75,1125 +20 10059755 . G . . END=10059756 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:31:0,81,1215 +20 10059757 . T . . END=10059774 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:25:0,75,810 +20 10059775 . T . . END=10059776 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:27:62:27:0,62,810 +20 10059777 . G . . END=10059778 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:28:75:27:0,75,1125 +20 10059779 . G . . END=10059782 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:28:0,81,1215 +20 10059783 . T . . END=10059786 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:32:0,93,1395 +20 10059787 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:80:33:0,80,967 +20 10059788 . A . . END=10059798 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:32:0,93,1012 +20 10059799 . C . . END=10059814 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:33:0,99,999 +20 10059815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1019 +20 10059816 . C . . END=10059843 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:35:0,103,1085 +20 10059844 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:95:40:0,95,1170 +20 10059845 . A . . END=10059853 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:38:0,102,1530 +20 10059854 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:85:38:0,85,1087 +20 10059855 . G . . END=10059856 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,99,1485 +20 10059857 . T . . END=10059859 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:37:0,95,1090 +20 10059860 . C . . END=10059876 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:34:0,99,1117 +20 10059877 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1048 +20 10059878 . C . . END=10059880 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10059881 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:35:0,96,1440 +20 10059882 . T . . END=10059899 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1131 +20 10059900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:88:39:0,88,1169 +20 10059901 . G . . END=10059917 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,102,1113 +20 10059918 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:96:38:0,96,1182 +20 10059919 . A . . END=10060111 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:37:0,99,1097 +20 10060112 . A . . END=10060113 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:96:37:0,96,1440 +20 10060114 . C . . END=10060127 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:35:0,99,1485 +20 10060128 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:74:34:0,74,1045 +20 10060129 . T . . END=10060130 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:94:33:0,94,934 +20 10060131 . T . . END=10060137 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:33:0,99,1042 +20 10060138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:92:36:0,92,1060 +20 10060139 . A . . END=10060149 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,100,1043 +20 10060150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:81:40:0,81,1138 +20 10060151 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:92:38:0,92,1085 +20 10060152 . G . . END=10060222 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:36:0,99,1079 +20 10060223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:95:43:0,95,1264 +20 10060224 . A . . END=10060410 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:36:0,102,1272 +20 10060411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:79:36:0,79,1033 +20 10060412 . G . . END=10060422 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,102,1530 +20 10060423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:85:35:0,85,1083 +20 10060424 . A . . END=10060438 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:35:0,99,1485 +20 10060439 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:90:40:0,90,1185 +20 10060440 . C . . END=10060448 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:39:0,111,1665 +20 10060449 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:98:42:0,98,1236 +20 10060450 . A . . END=10060453 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:41:0,117,1755 +20 10060454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:72:40:0,72,1148 +20 10060455 . C . . END=10060461 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:37:0,111,1174 +20 10060462 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:90:41:0,90,1142 +20 10060463 . T . . END=10060468 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:39:0,105,1170 +20 10060469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:87:40:0,87,1136 +20 10060470 . T . . END=10060868 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:51:99:39:0,105,1177 +20 10060869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:49:91:49:0,91,1347 +20 10060870 . A . . END=10061081 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:55:99:44:0,117,1715 +20 10061082 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:95:45:0,95,1314 +20 10061083 . A . . END=10061095 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:99:40:0,99,1485 +20 10061096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:96:41:0,96,1440 +20 10061097 . C . . END=10061100 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:39:0,99,1485 +20 10061101 . G . . END=10061103 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:36:0,95,1085 +20 10061104 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:86:36:0,86,1125 +20 10061105 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10061106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:36:0,93,1070 +20 10061107 . A . . END=10061110 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,108,1133 +20 10061111 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:91:38:0,91,1130 +20 10061112 . A . . END=10061125 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:39:0,108,1161 +20 10061126 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:87:42:0,87,1193 +20 10061127 . C . . END=10061191 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:47:99:40:0,99,1289 +20 10061192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:47:97:47:0,97,1441 +20 10061193 . A . . END=10061246 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:38:0,105,1357 +20 10061247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:98:39:0,98,1160 +20 10061248 . C . . END=10061251 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,99,1485 +20 10061252 . A . . END=10061257 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:96:37:0,96,1440 +20 10061258 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:88:35:0,88,1059 +20 10061259 . T . . END=10061262 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:34:0,99,1485 +20 10061263 . A . . END=10061274 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:31:0,93,954 +20 10061275 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:76:33:0,76,946 +20 10061276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:33:0,93,1395 +20 10061277 . A . . END=10061286 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:81:31:0,81,1215 +20 10061287 . A . . END=10061288 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:93:31:0,93,967 +20 10061289 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:30:0,78,907 +20 10061290 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:32:0,93,1395 +20 10061291 . C . . END=10061293 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10061294 . C . . END=10061297 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:92:35:0,92,1112 +20 10061298 . T . . END=10061300 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,99,1485 +20 10061301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:87:37:0,87,1103 +20 10061302 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:98:38:0,98,1140 +20 10061303 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:39:0,105,1575 +20 10061304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:89:38:0,89,1163 +20 10061305 . G . . END=10061306 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:37:0,102,1530 +20 10061307 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1090 +20 10061308 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:77:38:0,77,1077 +20 10061309 . A . . END=10061504 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:35:0,100,1071 +20 10061505 . T . . END=10061506 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:96:37:0,96,1440 +20 10061507 . T . . END=10061511 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:38:0,99,1485 +20 10061512 . G . . END=10061527 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:33:0,90,1350 +20 10061528 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:80:32:0,80,930 +20 10061529 . C . . END=10061534 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,1395 +20 10061535 . C . . END=10061545 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1056 +20 10061546 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:95:37:0,95,1119 +20 10061547 . C . . END=10061556 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,102,1530 +20 10061557 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:80:36:0,80,1106 +20 10061558 . C . . END=10061569 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10061570 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:36:0,96,1440 +20 10061571 . A . . END=10061572 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:36:0,99,1485 +20 10061573 . A . . END=10061578 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:93:35:0,93,1395 +20 10061579 . T C, . . BaseQRankSum=0.610;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.844 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:17,15,0:32:99:.:391,0,454,442,499,942:7,10,7,8 +20 10061580 . C . . END=10061590 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:31:0,90,1350 +20 10061591 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:75:32:0,75,1004 +20 10061592 . G . . END=10061594 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:93:31:0,93,945 +20 10061595 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:68:31:0,68,915 +20 10061596 . C . . END=10061599 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:90:31:0,90,1350 +20 10061600 . C . . END=10061603 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10061604 . C . . END=10061607 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:33:0,96,1440 +20 10061608 . G . . END=10061609 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:33:0,99,1029 +20 10061610 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:34:0,84,1011 +20 10061611 . C . . END=10061616 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:33:0,99,1078 +20 10061617 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:82:33:0,82,1016 +20 10061618 . A . . END=10061621 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1065 +20 10061622 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:87:34:0,87,1061 +20 10061623 . G . . END=10061625 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:96:35:0,96,1440 +20 10061626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:99:38:0,99,1485 +20 10061627 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:80:37:0,80,1080 +20 10061628 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:37:0,99,1485 +20 10061629 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:92:36:0,92,1035 +20 10061630 . C . . END=10061631 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10061632 . C T, . . DP=80;ExcessHet=3.01;RAW_MQandDP=122400,34 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:0,34,0:34:99:.:1106,102,0,1106,102,1106:0,0,18,16 +20 10061633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:48:35:0,48,999 +20 10061634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:96:35:0,96,1440 +20 10061635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:87:35:0,87,1076 +20 10061636 . G . . END=10061637 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:34:0,93,1395 +20 10061638 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:86:34:0,86,1030 +20 10061639 . T . . END=10061644 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:93:33:0,93,1395 +20 10061645 . A . . END=10061659 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:30:0,81,992 +20 10061660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:78:30:0,78,898 +20 10061661 . A . . END=10061665 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:81:29:0,81,1215 +20 10061666 . C . . END=10061667 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:78:31:0,78,1170 +20 10061668 . T . . END=10061673 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:81:30:0,81,1215 +20 10061674 . A . . END=10061684 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:32:0,90,1350 +20 10061685 . A . . END=10061691 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:84:32:0,84,1260 +20 10061692 . C . . END=10061694 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10061695 . T . . END=10061699 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:84:31:0,84,997 +20 10061700 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:32:0,90,1350 +20 10061701 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:87:32:0,87,1305 +20 10061702 . C . . END=10061703 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10061704 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:87:33:0,87,1305 +20 10061705 . A . . END=10061710 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:90:33:0,90,1350 +20 10061711 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:65:32:0,65,906 +20 10061712 . A . . END=10061722 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:30:0,90,942 +20 10061723 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,987 +20 10061724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:96:32:0,96,942 +20 10061725 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:88:33:0,88,982 +20 10061726 . G . . END=10061728 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:99:34:0,99,1485 +20 10061729 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:91:34:0,91,1031 +20 10061730 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:35:0,99,1485 +20 10061731 . G . . END=10061739 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:90:33:0,90,1047 +20 10061740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:82:31:0,82,920 +20 10061741 . G . . END=10061750 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:32:90:31:0,90,914 +20 10061751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:74:34:0,74,1007 +20 10061752 . A . . END=10061759 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:99:35:0,99,1485 +20 10061760 . A . . END=10061767 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:93:34:0,93,1395 +20 10061768 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:69:35:0,69,1030 +20 10061769 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:80:34:0,80,1060 +20 10061770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:34:96:34:0,96,1440 +20 10061771 . A . . END=10061782 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:99:34:0,99,1085 +20 10061783 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:94:35:0,94,1097 +20 10061784 . C . . END=10061793 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,100,1051 +20 10061794 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:38:98:38:0,98,1155 +20 10061795 . A . . END=10061801 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:38:0,106,1171 +20 10061802 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:95:43:0,95,1247 +20 10061803 . T . . END=10061838 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:39:0,104,1122 +20 10061839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:91:41:0,91,1187 +20 10061840 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:88:40:0,88,1124 +20 10061841 . G . . END=10061849 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:37:0,100,1174 +20 10061850 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:36:90:36:0,90,1114 +20 10061851 . C . . END=10061976 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:99:36:0,100,1133 +20 10061977 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:94:41:0,94,1140 +20 10061978 . A . . END=10061981 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:43:0,117,1299 +20 10061982 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:95:43:0,95,1236 +20 10061983 . C . . END=10061992 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:41:0,106,1218 +20 10061993 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:88:41:0,88,1130 +20 10061994 . T . . END=10062011 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:42:0,116,1309 +20 10062012 . A . . END=10062013 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:96:41:0,96,1252 +20 10062014 . T . . END=10062022 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:41:99:40:0,114,1268 +20 10062023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:96:42:0,96,1280 +20 10062024 . C . . END=10062150 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:54:99:42:0,99,1255 +20 10062151 . A G, . . BaseQRankSum=-1.656e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=212400,59;ReadPosRankSum=-6.130e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:38,19,0:57:99:.:406,0,1012,520,1069,1588:18,20,9,10 +20 10062152 . T . . END=10062272 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:57:99:48:0,120,1800 +20 10062273 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:49:96:49:0,96,1419 +20 10062274 . C . . END=10062328 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:46:99:42:0,101,1340 +20 10062329 . T C, . . BaseQRankSum=-2.037e+00;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.337 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:15,25,0:40:99:.:620,0,364,665,438,1103:4,11,13,12 +20 10062330 . T . . END=10062400 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:46:99:39:0,107,1300 +20 10062401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:44:95:44:0,95,1333 +20 10062402 . C . . END=10062440 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:99:41:0,100,1278 +20 10062441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:43:97:43:0,97,1236 +20 10062442 . C . . END=10062530 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:47:99:41:0,104,1224 +20 10062531 . A G, . . BaseQRankSum=-2.520e-01;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=0.447 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:29,15,0:44:99:.:313,0,725,400,770,1169:12,17,4,11 +20 10062532 . T . . END=10062695 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:46:99:41:0,111,1297 +20 10062696 . T C, . . BaseQRankSum=0.953;ClippingRankSum=0.00;DP=93;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=-1.579e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:18,27,0:45:99:.:668,0,404,722,484,1205:11,7,16,11 +20 10062697 . C . . END=10062772 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:45:99:39:0,102,1482 +20 10062773 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:93:40:0,93,1197 +20 10062774 . C . . END=10062873 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:42:99:37:0,99,1206 +20 10062874 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:40:91:40:0,91,1199 +20 10062875 . T . . END=10062884 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:39:99:38:0,105,1575 +20 10062885 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:81:37:0,81,1060 +20 10062886 . A . . END=10062901 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:99:35:0,102,1043 +20 10062902 . A . . END=10062907 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:37:90:36:0,90,1350 +20 10062908 . G . . END=10062911 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:35:81:34:0,81,1215 +20 10062912 . A . . END=10062920 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:33:72:31:0,72,1080 +20 10062921 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:69:31:0,69,1035 +20 10062922 . T C, . . DP=77;ExcessHet=3.01;RAW_MQandDP=111600,31 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:46:0,105,1575,105,1575,1575 ./.:0,31,0:31:92:.:917,92,0,917,92,917:0,0,18,13 +20 10062923 . G . . END=10062924 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:66:31:0,66,990 +20 10062925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:57:31:0,57,855 +20 10062926 . A . . END=10062928 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:51:31:0,51,765 +20 10062929 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:48:31:0,48,720 +20 10062930 . T . . END=10062931 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:45:30:0,45,675 +20 10062932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:30:36:30:0,36,540 +20 10062933 . C . . END=10062934 GT:DP:GQ:MIN_DP:PL ./.:76:99:46:0,105,1575 ./.:31:33:30:0,33,495 +20 10062935 . CAAA C,CA,CAA,CAAAA, . . BaseQRankSum=1.34;ClippingRankSum=0.00;DP=111;ExcessHet=3.01;MQRankSum=1.71;RAW_MQandDP=350168,111;ReadPosRankSum=-8.900e-02 GT:AD:DP:GQ:PL:SB ./.:5,2,2,4,10,0:23:16:130,219,1823,163,1171,1044,115,628,576,505,0,158,82,16,101,243,986,887,608,171,888:2,3,9,9 ./.:13,0,0,10,0,0:23:99:138,177,404,177,404,404,0,227,227,197,177,404,404,227,404,177,404,404,227,404,404:7,6,8,2 +20 10062936 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:5,4,0:23:16:130,115,505,243,608,888:2,3,9,9 ./.:13,10,0:23:99:138,0,197,177,227,404:7,6,8,2 +20 10062937 . A *, . . DP=120 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:5,4,0:23:16:.:130,115,505,243,608,888:2,3,9,9 ./.:.:41:0:41:0,0,653,0,653,653 +20 10062938 . A *, . . DP=119 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:5,4,0:23:16:.:130,115,505,243,608,888:2,3,9,9 ./.:.:41:99:40:0,99,1272,99,1272,1272 +20 10062939 . A . . END=10062954 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:41:99:40:0,99,1272 +20 10062955 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:40:89:40:0,89,1208 +20 10062956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:80:69:0,80,2241 ./.:40:99:37:0,100,1052 +20 10062957 . C . . END=10062991 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:37:0,100,1052 +20 10062992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:95:39:0,95,1170 +20 10062993 . G . . END=10062999 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:41:0,101,1176 +20 10063000 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:88:42:0,88,1199 +20 10063001 . T . . END=10063018 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:44:99:41:0,106,1217 +20 10063019 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:44:80:44:0,80,1244 +20 10063020 . C . . END=10063087 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:43:99:40:0,102,1234 +20 10063088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:89:39:0,89,1115 +20 10063089 . T . . END=10063090 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,99,1147 +20 10063091 . C . . END=10063101 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:34:0,90,1080 +20 10063102 . T . . END=10063104 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:31:0,87,1305 +20 10063105 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:79:33:0,79,979 +20 10063106 . A . . END=10063113 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:84:32:0,84,1260 +20 10063114 . T . . END=10063116 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,1021 +20 10063118 . C . . END=10063119 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,102,1530 +20 10063120 . C . . END=10063122 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:34:0,96,1440 +20 10063123 . T . . END=10063125 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1305 +20 10063126 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:75:36:0,75,1095 +20 10063127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:90:36:0,90,1350 +20 10063128 . A . . END=10063130 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:87:34:0,87,1305 +20 10063131 . C . . END=10063132 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:35:0,90,1350 +20 10063133 . G . . END=10063146 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:30:0,81,969 +20 10063147 . A . . END=10063163 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,982 +20 10063164 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:87:30:0,87,1305 +20 10063165 . G . . END=10063168 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10063169 . G . . END=10063170 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:33:0,99,1025 +20 10063171 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:85:34:0,85,1008 +20 10063172 . G . . END=10063174 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,102,1064 +20 10063175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:94:35:0,94,1073 +20 10063176 . C . . END=10063179 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,102,1061 +20 10063180 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:86:35:0,86,1076 +20 10063181 . A . . END=10063182 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,102,1104 +20 10063183 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:88:35:0,88,1078 +20 10063184 . A . . END=10063199 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:97:39:0,97,1126 +20 10063201 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:89:39:0,89,1177 +20 10063202 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1153 +20 10063203 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:38:0,99,1485 +20 10063204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:90:38:0,90,1088 +20 10063205 . A . . END=10063206 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:41:0,108,1620 +20 10063207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:87:40:0,87,1137 +20 10063208 . G . . END=10063269 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:38:0,99,1151 +20 10063270 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:98:39:0,98,1139 +20 10063271 . T . . END=10063299 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:33:0,99,1012 +20 10063300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,994 +20 10063301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:99:33:0,99,1033 +20 10063302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:96:32:0,96,1008 +20 10063303 . A . . END=10063309 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1065 +20 10063310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:96:33:0,96,1440 +20 10063311 . C . . END=10063351 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:35:0,99,1114 +20 10063352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:94:40:0,94,1230 +20 10063353 . T . . END=10063357 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:37:0,99,1485 +20 10063358 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:91:36:0,91,1062 +20 10063359 . T . . END=10063360 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,99,1485 +20 10063361 . G . . END=10063366 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:93:33:0,93,1395 +20 10063367 . T . . END=10063369 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:82:34:0,82,1010 +20 10063370 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:79:35:0,79,1011 +20 10063371 . T . . END=10063374 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:33:0,87,1305 +20 10063375 . A . . END=10063376 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:34:0,90,1062 +20 10063377 . T . . END=10063390 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:84:29:0,84,952 +20 10063391 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:54:29:0,54,870 +20 10063392 . T . . END=10063394 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:71:29:0,71,858 +20 10063395 . A . . END=10063397 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:84:29:0,84,1260 +20 10063398 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:70:30:0,70,858 +20 10063399 . G . . END=10063401 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:84:29:0,84,1260 +20 10063402 . T . . END=10063403 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10063404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:69:32:0,69,959 +20 10063405 . G . . END=10063407 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063408 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,982 +20 10063409 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:93:33:0,93,1395 +20 10063410 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:86:33:0,86,998 +20 10063411 . G . . END=10063417 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10063418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,918 +20 10063419 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063420 . C . . END=10063422 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:34:0,90,1350 +20 10063423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1063 +20 10063424 . C . . END=10063425 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1350 +20 10063426 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,1044 +20 10063427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:75:32:0,75,981 +20 10063428 . T . . END=10063432 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10063433 . T . . END=10063435 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,942 +20 10063436 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:78:32:0,78,995 +20 10063437 . T . . END=10063442 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:31:0,81,939 +20 10063443 . A . . END=10063444 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:78:30:0,78,1170 +20 10063445 . C . . END=10063452 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:31:0,80,957 +20 10063453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:57:35:0,57,993 +20 10063455 . T . . END=10063457 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:35:0,96,1440 +20 10063458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:78:35:0,78,1079 +20 10063459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10063460 . T . . END=10063463 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1072 +20 10063464 . A . . END=10063465 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10063466 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063467 . C . . END=10063471 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,99,1485 +20 10063472 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063473 . C . . END=10063480 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:35:0,99,1485 +20 10063481 . A . . END=10063494 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:30:0,90,981 +20 10063495 . A . . END=10063500 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:33:0,99,1048 +20 10063501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:96:32:0,96,1014 +20 10063502 . T . . END=10063513 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:34:0,99,1112 +20 10063514 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:96:41:0,96,1242 +20 10063515 . A . . END=10063525 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:40:0,100,1227 +20 10063526 . T . . END=10063527 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:93:42:0,93,1209 +20 10063528 . T . . END=10063549 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:41:0,110,1259 +20 10063550 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:91:40:0,91,1167 +20 10063551 . T . . END=10063584 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:38:0,108,1125 +20 10063585 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:79:42:0,79,1193 +20 10063586 . A . . END=10063666 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:36:0,99,1136 +20 10063667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:96:37:0,96,1086 +20 10063668 . C . . END=10063671 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:35:0,99,1485 +20 10063672 . T . . END=10063674 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:34:0,96,1440 +20 10063675 . C . . END=10063676 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:94:35:0,94,1066 +20 10063678 . G . . END=10063679 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,99,1485 +20 10063680 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:88:35:0,88,1061 +20 10063681 . C . . END=10063723 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:34:0,101,1079 +20 10063724 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:90:41:0,90,1244 +20 10063725 . A . . END=10063730 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:38:0,105,1575 +20 10063731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:96:38:0,96,1091 +20 10063732 . C . . END=10063737 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:34:0,99,1485 +20 10063738 . C . . END=10063741 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:93:35:0,93,1395 +20 10063742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:86:34:0,86,1032 +20 10063743 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063744 . G . . END=10063745 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063746 . A . . END=10063755 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1350 +20 10063756 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063757 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:76:33:0,76,955 +20 10063758 . T . . END=10063759 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:87:32:0,87,1305 +20 10063760 . G . . END=10063763 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10063764 . T . . END=10063768 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:30:0,81,1215 +20 10063769 . G . . END=10063789 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:27:72:25:0,72,773 +20 10063790 . C . . END=10063792 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,1215 +20 10063793 . C . . END=10063794 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:72:29:0,72,843 +20 10063795 . T . . END=10063797 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,1260 +20 10063798 . A . . END=10063800 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1057 +20 10063801 . A . . END=10063803 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063804 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:72:34:0,72,944 +20 10063805 . A . . END=10063808 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:33:0,99,1040 +20 10063809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:83:33:0,83,989 +20 10063810 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063811 . G . . END=10063823 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:34:0,99,1485 +20 10063824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:90:41:0,90,1243 +20 10063825 . T . . END=10064065 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:36:0,99,1122 +20 10064066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:96:38:0,96,1204 +20 10064067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:87:38:0,87,1119 +20 10064068 . A . . END=10064090 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:37:0,102,1179 +20 10064091 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:92:41:0,92,1137 +20 10064092 . A . . END=10064096 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:39:0,111,1665 +20 10064097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:95:40:0,95,1182 +20 10064098 . A . . END=10064100 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:40:0,114,1710 +20 10064101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:94:40:0,94,1226 +20 10064102 . T . . END=10064103 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,111,1167 +20 10064104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:90:39:0,90,1157 +20 10064105 . A . . END=10064106 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:39:0,109,1180 +20 10064107 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:87:40:0,87,1132 +20 10064108 . T . . END=10064114 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:43:99:40:0,101,1300 +20 10064115 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:88:42:0,88,1226 +20 10064116 . G . . END=10064135 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:37:0,102,1123 +20 10064136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:93:36:0,93,1042 +20 10064137 . C . . END=10064260 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:49:99:39:0,114,1203 +20 10064261 . T G, . . BaseQRankSum=0.993;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=172800,48;ReadPosRankSum=-1.260e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:22,23,0:45:99:.:572,0,499,638,568,1205:13,9,15,8 +20 10064262 . A . . END=10064305 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:52:99:49:0,120,1800 +20 10064306 . T A, . . DP=90;ExcessHet=3.01;RAW_MQandDP=172800,48 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:0,48,0:48:99:.:1511,144,0,1511,144,1511:0,0,27,21 +20 10064307 . A . . END=10064450 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:50:99:46:0,120,1800 +20 10064451 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:48:98:48:0,98,1355 +20 10064452 . T . . END=10064528 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:41:0,108,1310 +20 10064529 . A G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:0,39,0:39:99:.:1049,115,0,1049,115,1049:0,0,22,17 +20 10064530 . G . . END=10064770 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:50:99:38:0,99,1209 +20 10064771 . C . . END=10064781 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:33:0,90,1350 +20 10064782 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:87:32:0,87,1305 +20 10064783 . A . . END=10064800 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:32:0,90,911 +20 10064801 . C . . END=10064802 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:83:33:0,83,982 +20 10064803 . A . . END=10064806 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:93:32:0,93,1395 +20 10064807 . C . . END=10064810 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10064811 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:91:36:0,91,1106 +20 10064812 . G . . END=10065310 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:35:0,99,1101 +20 10065311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:84:39:0,84,1185 +20 10065312 . T . . END=10065323 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,99,1117 +20 10065324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:79:37:0,79,1074 +20 10065325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:84:38:0,84,1106 +20 10065326 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1136 +20 10065327 . A . . END=10065328 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:38:0,99,1485 +20 10065329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:92:39:0,92,1136 +20 10065330 . T . . END=10065332 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:37:0,99,1162 +20 10065333 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:93:38:0,93,1126 +20 10065334 . G . . END=10065336 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,101,1055 +20 10065337 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:86:37:0,86,1060 +20 10065338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:37:0,100,1130 +20 10065339 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:65:37:0,65,1000 +20 10065340 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:80:37:0,80,1001 +20 10065341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:65:37:0,65,1021 +20 10065343 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065344 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:77:37:0,77,1084 +20 10065345 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065346 . C . . END=10065349 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:73:33:0,73,956 +20 10065350 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1305 +20 10065351 . A . . END=10065353 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:74:33:0,74,993 +20 10065354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10065355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:68:33:0,68,984 +20 10065356 . A . . END=10065358 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:32:0,80,942 +20 10065359 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:69:32:0,69,952 +20 10065360 . C . . END=10065361 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:87:31:0,87,1305 +20 10065362 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:71:32:0,71,1002 +20 10065363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:32:0,80,960 +20 10065364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:72:34:0,72,1008 +20 10065365 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:47:33:0,47,920 +20 10065366 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:68:33:0,68,983 +20 10065367 . T . . END=10065372 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065373 . C . . END=10065382 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:84:32:0,84,1010 +20 10065383 . T G, . . BaseQRankSum=-4.436e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=122400,34;ReadPosRankSum=-7.660e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:15,16,0:31:99:.:342,0,417,387,464,851:9,6,9,7 +20 10065384 . T . . END=10065393 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:30:0,81,1215 +20 10065394 . C . . END=10065400 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1044 +20 10065401 . T . . END=10065433 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:35:0,99,1132 +20 10065434 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1060 +20 10065435 . A . . END=10065455 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:36:0,103,1081 +20 10065456 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:92:40:0,92,1228 +20 10065457 . G . . END=10065459 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:36:0,102,1530 +20 10065460 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:84:38:0,84,1132 +20 10065461 . C . . END=10065470 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:35:0,102,1530 +20 10065471 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:89:35:0,89,1063 +20 10065472 . T . . END=10065480 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,100,1151 +20 10065481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1132 +20 10065482 . T . . END=10065483 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,108,1153 +20 10065484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:92:36:0,92,1141 +20 10065485 . T . . END=10065486 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,108,1163 +20 10065487 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1147 +20 10065488 . T . . END=10065490 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,107,1099 +20 10065491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1126 +20 10065492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,105,1575 +20 10065493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:86:36:0,86,1078 +20 10065494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:32:35:0,32,925 +20 10065495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:81:36:0,81,1035 +20 10065496 . C . . END=10065502 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,99,1141 +20 10065503 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:90:37:0,90,1350 +20 10065504 . A . . END=10065505 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:88:36:0,88,1059 +20 10065506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:90:36:0,90,1350 +20 10065507 . T . . END=10065509 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:84:35:0,84,1260 +20 10065510 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:78:35:0,78,1016 +20 10065511 . G . . END=10065514 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:84:31:0,84,1260 +20 10065515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,893 +20 10065516 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065517 . T C, . . BaseQRankSum=0.690;ClippingRankSum=0.00;DP=73;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=111600,31;ReadPosRankSum=-1.828e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:70:99:42:.:.:0,105,1575,105,1575,1575 ./.:18,12,0:30:99:.:0|1:10065517_T_C:273,0,706,327,741,1068:9,9,4,8 +20 10065518 . T . . END=10065520 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065521 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,1010 +20 10065522 . T . . END=10065524 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10065525 . G A, . . BaseQRankSum=0.814;ClippingRankSum=0.00;DP=70;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=0.551 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:70:99:42:.:.:0,105,1575,105,1575,1575 ./.:10,17,0:27:99:.:1|0:10065517_T_C:481,0,391,514,442,956:4,6,9,8 +20 10065526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065527 . A . . END=10065533 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:31:0,81,1215 +20 10065534 . C . . END=10065543 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:72:29:0,72,1080 +20 10065544 . A . . END=10065547 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,1215 +20 10065548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:65:28:0,65,775 +20 10065549 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:54:28:0,54,805 +20 10065550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:69:29:0,69,855 +20 10065551 . T . . END=10065562 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:28:0,81,1215 +20 10065563 . T . . END=10065564 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:71:28:0,71,865 +20 10065565 . T . . END=10065572 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,875 +20 10065573 . A . . END=10065575 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:78:29:0,78,1170 +20 10065576 . C . . END=10065580 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:84:32:0,84,1260 +20 10065581 . A . . END=10065584 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10065585 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,882 +20 10065586 . C . . END=10065604 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:82:29:0,82,948 +20 10065605 . A . . END=10065614 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,951 +20 10065615 . G . . END=10065617 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:61:31:0,61,902 +20 10065618 . T . . END=10065619 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:93:32:0,93,1395 +20 10065620 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:46:32:0,46,875 +20 10065621 . T . . END=10065623 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,978 +20 10065624 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,937 +20 10065625 . A . . END=10065626 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,958 +20 10065627 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:82:31:0,82,926 +20 10065628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,972 +20 10065629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,898 +20 10065630 . A . . END=10065635 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,948 +20 10065636 . A . . END=10065637 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:99:33:0,99,1035 +20 10065638 . T . . END=10065644 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065645 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:85:34:0,85,993 +20 10065646 . C . . END=10065652 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10065653 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,901 +20 10065654 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065655 . A . . END=10065663 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:29:0,84,932 +20 10065664 . C . . END=10065669 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,990 +20 10065670 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:82:32:0,82,965 +20 10065671 . T . . END=10065676 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:93:32:0,93,1395 +20 10065677 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:70:32:0,70,930 +20 10065678 . T . . END=10065683 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:90:30:0,90,912 +20 10065684 . T . . END=10065686 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:29:0,81,1215 +20 10065687 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:78:31:0,78,1170 +20 10065688 . T . . END=10065694 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:30:0,81,1017 +20 10065695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:78:30:0,78,1170 +20 10065696 . G . . END=10065698 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:30:0,81,1215 +20 10065699 . T . . END=10065708 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:72:27:0,72,836 +20 10065709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:61:26:0,61,769 +20 10065710 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:72:26:0,72,1080 +20 10065711 . A . . END=10065715 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:64:24:0,64,792 +20 10065716 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:27:72:27:0,72,1080 +20 10065717 . C . . END=10065722 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:66:25:0,66,779 +20 10065723 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:46:26:0,46,780 +20 10065724 . C . . END=10065727 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:66:24:0,66,990 +20 10065728 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:26:24:0,26,583 +20 10065729 . T . . END=10065737 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:61:21:0,61,641 +20 10065738 . G . . END=10065739 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:55:24:0,55,665 +20 10065740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:66:25:0,66,990 +20 10065741 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:58:25:0,58,735 +20 10065742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:39:24:0,39,649 +20 10065743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:66:23:0,66,990 +20 10065744 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:52:23:0,52,661 +20 10065745 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:60:24:0,60,900 +20 10065746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:55:24:0,55,675 +20 10065747 . G . . END=10065748 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:57:23:0,57,855 +20 10065749 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:51:22:0,51,635 +20 10065750 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:60:22:0,60,900 +20 10065751 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:58:23:0,58,668 +20 10065752 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:60:23:0,60,900 +20 10065753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:58:23:0,58,687 +20 10065754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:49:22:0,49,624 +20 10065755 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:16:22:0,16,531 +20 10065756 . T . . END=10065758 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:60:20:0,60,637 +20 10065759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:52:23:0,52,677 +20 10065760 . T . . END=10065761 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:66:23:0,66,990 +20 10065762 . T . . END=10065772 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:70:24:0,70,754 +20 10065773 . A . . END=10065774 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:60:31:0,60,900 +20 10065775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:54:32:0,54,810 +20 10065776 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:76:49:0,76,1707 ./.:34:32:34:0,32,849 +20 10065777 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:94:48:0,94,1738 ./.:35:39:35:0,39,585 +20 10065778 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:48:0,120,1800 ./.:42:42:42:0,42,630 +20 10065779 . G GTT,GTTT, . . DP=78;ExcessHet=3.01;RAW_MQandDP=91481,26 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:52:0:52:0,0,1441,0,1441,1441,0,1441,1441,1441 ./.:0,7,6,0:13:50:.:687,131,50,154,0,87,494,126,151,432:0,0,7,6 +20 10065780 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:38:61:0,38,2046 ./.:46:0:46:0,0,893 +20 10065781 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:75:71:0,75,1125 ./.:45:60:44:0,60,900 +20 10065782 . T . . END=10065802 GT:DP:GQ:MIN_DP:PL ./.:82:99:65:0,108,1620 ./.:45:60:44:0,60,900 +20 10065803 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:81:59:0,81,2051 ./.:30:0:28:0,0,0 +20 10065804 . C . . END=10065807 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:0:28:0,0,0 +20 10065808 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:58:31:0,58,735 +20 10065809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:63:31:0,63,945 +20 10065810 . A . . END=10065812 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:0:24:0,0,278 +20 10065813 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:22:4:22:0,4,493 +20 10065814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:0:24:0,0,528 +20 10065815 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:14:24:0,14,587 +20 10065816 . G . . END=10065817 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:0:25:0,0,483 +20 10065818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:22:19:22:0,19,562 +20 10065819 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,585 +20 10065820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:38:24:0,38,676 +20 10065821 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,547 +20 10065822 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:38:24:0,38,657 +20 10065823 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,568 +20 10065824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:47:26:0,47,733 +20 10065825 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:42:25:0,42,725 +20 10065826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:54:25:0,54,810 +20 10065827 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:47:27:0,47,814 +20 10065828 . G . . END=10065832 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:23:0:22:0,0,417 +20 10065833 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:24:25:24:0,25,632 +20 10065834 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:0:26:0,0,636 +20 10065835 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:60:26:0,60,900 +20 10065836 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:25:27:0,25,715 +20 10065837 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:0:27:0,0,654 +20 10065838 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:38:27:0,38,732 +20 10065839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:41:27:0,41,732 +20 10065840 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:57:30:0,57,877 +20 10065841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:44:30:0,44,854 +20 10065842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:53:29:0,53,880 +20 10065843 . G . . END=10065844 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:0:27:0,0,605 +20 10065845 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:46:27:0,46,818 +20 10065846 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:25:0:25:0,0,623 +20 10065847 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:21:27:0,21,696 +20 10065848 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:46:29:0,46,765 +20 10065849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:0:28:0,0,691 +20 10065850 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:2:28:0,2,706 +20 10065851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:51:28:0,51,813 +20 10065852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:50:28:0,50,823 +20 10065853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:0:28:0,0,643 +20 10065854 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:50:28:0,50,828 +20 10065855 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:69:27:0,69,1035 +20 10065856 . A . . END=10065857 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:0:29:0,0,670 +20 10065858 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:43:29:0,43,832 +20 10065859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:18:31:0,18,833 +20 10065860 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:33:32:0,33,907 +20 10065861 . T . . END=10065863 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:63:32:0,63,920 +20 10065864 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:87:31:0,87,1305 +20 10065865 . C . . END=10065870 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:60:31:0,60,943 +20 10065871 . T . . END=10065872 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:31:0,90,1350 +20 10065873 . T . . END=10065874 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:63:32:0,63,966 +20 10065875 . C . . END=10065877 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:32:0,90,1350 +20 10065878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:67:33:0,67,1034 +20 10065879 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:70:34:0,70,1034 +20 10065880 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:96:33:0,96,1440 +20 10065881 . T . . END=10065882 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:76:36:0,76,1137 +20 10065883 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:36:0,102,1530 +20 10065884 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:78:37:0,78,1146 +20 10065885 . A . . END=10065887 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:80:37:0,80,1145 +20 10065888 . C . . END=10065905 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:35:0,102,1530 +20 10065906 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:74:33:0,74,1021 +20 10065907 . T . . END=10066020 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:45:99:36:0,101,1201 +20 10066021 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:95:43:0,95,1245 +20 10066022 . T . . END=10066106 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:99:36:0,100,1147 +20 10066107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:98:40:0,98,1159 +20 10066108 . G . . END=10066123 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:99:37:0,102,1151 +20 10066124 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:92:40:0,92,1121 +20 10066125 . A . . END=10066152 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:99:36:0,99,1102 +20 10066153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:97:36:0,97,1083 +20 10066154 . A . . END=10066162 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:33:0,99,1016 +20 10066163 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:97:36:0,97,1033 +20 10066164 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:83:36:0,83,1017 +20 10066165 . T . . END=10066168 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:35:0,99,1485 +20 10066169 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:83:34:0,83,1038 +20 10066170 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:99:33:0,99,997 +20 10066171 . T . . END=10066173 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:91:32:0,91,970 +20 10066174 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:69:33:0,69,920 +20 10066175 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:93:35:0,93,1395 +20 10066176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:88:35:0,88,1050 +20 10066177 . T . . END=10066178 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:34:0,90,1350 +20 10066179 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:89:35:0,89,1021 +20 10066180 . G . . END=10066183 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:90:30:0,90,940 +20 10066184 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:77:34:0,77,1015 +20 10066185 . G . . END=10066192 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:32:0,90,1350 +20 10066193 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:83:33:0,83,953 +20 10066194 . T . . END=10066205 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:30:0,90,916 +20 10066206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:85:32:0,85,973 +20 10066207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:73:30:0,73,893 +20 10066208 . A . . END=10066211 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:31:0,90,954 +20 10066212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:83:34:0,83,977 +20 10066213 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:64:34:0,64,901 +20 10066214 . C . . END=10066234 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:33:0,90,986 +20 10066235 . T . . END=10066251 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:72:25:0,72,848 +20 10066252 . G . . END=10066265 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:63:25:0,63,945 +20 10066266 . G . . END=10066272 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:26:75:25:0,75,780 +20 10066273 . G . . END=10066275 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:27:80:27:0,80,831 +20 10066276 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:70:29:0,70,800 +20 10066277 . T . . END=10066281 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:90:30:0,90,881 +20 10066282 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:76:31:0,76,919 +20 10066283 . G . . END=10066285 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:90:31:0,90,929 +20 10066286 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:66:32:0,66,894 +20 10066287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:32:0,90,1350 +20 10066288 . G . . END=10066290 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:83:32:0,83,944 +20 10066291 . G . . END=10066296 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:32:0,90,1350 +20 10066297 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:84:33:0,84,986 +20 10066298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:79:32:0,79,953 +20 10066299 . G . . END=10066307 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:30:0,90,887 +20 10066308 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:82:31:0,82,948 +20 10066309 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:90:30:0,90,930 +20 10066310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:87:29:0,87,930 +20 10066311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:90:31:0,90,1350 +20 10066312 . G . . END=10066313 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:84:28:0,84,884 +20 10066314 . A . . END=10066317 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:32:0,93,963 +20 10066318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:88:33:0,88,967 +20 10066319 . C . . END=10066340 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:31:0,90,967 +20 10066341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:71:31:0,71,872 +20 10066342 . T . . END=10066344 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:96:33:0,96,1440 +20 10066345 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:82:33:0,82,950 +20 10066346 . C . . END=10066350 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:32:0,90,1350 +20 10066351 . A . . END=10066362 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:81:30:0,81,879 +20 10066363 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:29:75:29:0,75,780 +20 10066364 . A . . END=10066365 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:87:31:0,87,1305 +20 10066366 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:79:31:0,79,865 +20 10066367 . A . . END=10066374 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:81:30:0,81,1215 +20 10066375 . C . . END=10066380 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:31:0,90,961 +20 10066381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:99:33:0,99,999 +20 10066382 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:76:33:0,76,956 +20 10066383 . T . . END=10066394 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:34:0,102,1024 +20 10066395 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:93:35:0,93,1077 +20 10066396 . G . . END=10066398 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:35:0,102,1530 +20 10066399 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:90:35:0,90,1066 +20 10066400 . T . . END=10066404 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:33:0,99,1072 +20 10066405 . A . . END=10066412 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:90:33:0,90,1350 +20 10066413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:73:33:0,73,899 +20 10066415 . A . . END=10066416 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:81:33:0,81,1215 +20 10066417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:78:31:0,78,1170 +20 10066418 . C . . END=10066428 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:81:31:0,81,1215 +20 10066429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:90:31:0,90,1350 +20 10066430 . T . . END=10066435 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:84:30:0,84,1260 +20 10066436 . C . . END=10066442 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:32:0,93,1395 +20 10066443 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:82:33:0,82,947 +20 10066444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:96:33:0,96,1440 +20 10066445 . T . . END=10066448 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:99:33:0,99,1041 +20 10066449 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:93:31:0,93,984 +20 10066450 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:80:33:0,80,957 +20 10066451 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:75:33:0,75,998 +20 10066452 . T . . END=10066458 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:33:0,90,1350 +20 10066459 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:80:36:0,80,993 +20 10066460 . A . . END=10066462 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:93:33:0,93,1395 +20 10066463 . C . . END=10066475 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:34:0,99,1485 +20 10066476 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:40:93:40:0,93,1151 +20 10066477 . C . . END=10066496 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:38:0,99,1119 +20 10066497 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:94:42:0,94,1230 +20 10066498 . A . . END=10066511 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:99:40:0,103,1139 +20 10066512 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:94:42:0,94,1249 +20 10066513 . T . . END=10066516 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:41:0,114,1710 +20 10066517 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:88:42:0,88,1169 +20 10066518 . A . . END=10066533 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:40:0,111,1665 +20 10066534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:94:42:0,94,1224 +20 10066535 . A . . END=10066583 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:44:99:42:0,107,1313 +20 10066584 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:96:42:0,96,1219 +20 10066585 . T . . END=10066592 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:99:38:0,108,1620 +20 10066593 . C . . END=10066594 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:93:37:0,93,1104 +20 10066595 . T . . END=10066605 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:99:36:0,99,1171 +20 10066606 . C . . END=10066615 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:90:34:0,90,1091 +20 10066616 . T . . END=10066618 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:87:32:0,87,1305 +20 10066619 . G . . END=10066620 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:32:0,90,1350 +20 10066621 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:89:35:0,89,1078 +20 10066622 . G . . END=10066624 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:90:33:0,90,1350 +20 10066625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066626 . C . . END=10066627 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:90:32:0,90,1350 +20 10066628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066629 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:79:32:0,79,979 +20 10066630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066631 . G . . END=10066633 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:78:31:0,78,916 +20 10066634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:84:33:0,84,1260 +20 10066635 . A . . END=10066648 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:75:28:0,75,815 +20 10066649 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:81:30:0,81,1215 +20 10066650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:78:31:0,78,911 +20 10066651 . A . . END=10066652 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:31:81:31:0,81,1215 +20 10066653 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:28:67:28:0,67,781 +20 10066654 . A . . END=10066657 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:30:84:29:0,84,1260 +20 10066658 . A . . END=10066670 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:31:0,90,1350 +20 10066671 . T . . END=10066672 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066673 . A . . END=10066682 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:31:0,90,1350 +20 10066683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:87:33:0,87,1305 +20 10066684 . C . . END=10066687 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:90:33:0,90,1350 +20 10066688 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:88:33:0,88,956 +20 10066689 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:69:33:0,69,918 +20 10066690 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:33:0,93,1395 +20 10066691 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:99:35:0,99,1485 +20 10066692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:97:36:0,97,1067 +20 10066693 . A . . END=10066708 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:35:0,102,1060 +20 10066709 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:95:41:0,95,1178 +20 10066710 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:41:0,114,1710 +20 10066711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:91:41:0,91,1105 +20 10066712 . T . . END=10066726 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:39:99:38:0,100,1136 +20 10066727 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:97:38:0,97,1141 +20 10066728 . C . . END=10066731 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:99:40:0,99,1161 +20 10066732 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:41:98:41:0,98,1197 +20 10066733 . A . . END=10066737 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:39:0,102,1152 +20 10066738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:92:43:0,92,1204 +20 10066739 . C . . END=10066740 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:41:0,113,1279 +20 10066741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:84:42:0,84,1204 +20 10066742 . C . . END=10066852 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:44:99:39:0,99,1245 +20 10066853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:43:96:43:0,96,1254 +20 10066854 . G . . END=10066884 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:39:99:37:0,108,1122 +20 10066885 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:88:35:0,88,1007 +20 10066886 . C . . END=10066916 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:46:99:37:0,99,1131 +20 10066917 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:47:95:47:0,95,1407 +20 10066918 . T . . END=10066961 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:42:99:39:0,102,1260 +20 10066962 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:39:89:39:0,89,1180 +20 10066963 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:99:38:0,108,1620 +20 10066964 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:95:37:0,95,1136 +20 10066965 . T . . END=10066968 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:99:36:0,99,1485 +20 10066969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:88:36:0,88,1137 +20 10066970 . A . . END=10066972 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:99:35:0,99,1485 +20 10066973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:96:37:0,96,1440 +20 10066974 . G . . END=10066978 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:99:36:0,99,1485 +20 10066979 . C . . END=10066981 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:96:34:0,96,1440 +20 10066982 . T . . END=10066989 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:99:34:0,99,1485 +20 10066990 . T . . END=10066993 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:91:34:0,91,1090 +20 10066994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:62:33:0,62,949 +20 10066995 . A . . END=10067002 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:93:32:0,93,1005 +20 10067003 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:80:33:0,80,1014 +20 10067004 . T . . END=10067007 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:93:33:0,93,1395 +20 10067008 . A . . END=10067011 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:83:34:0,83,1038 +20 10067012 . A . . END=10067015 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:78:33:0,78,1170 +20 10067016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:81:36:0,81,1215 +20 10067017 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:35:62:35:0,62,981 +20 10067018 . A . . END=10067028 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:34:80:33:0,80,1011 +20 10067029 . C . . END=10067031 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:78:33:0,78,1170 +20 10067032 . T . . END=10067036 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:38:60:34:0,60,900 +20 10067037 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:57:37:0,57,855 +20 10067038 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:37:54:37:0,54,810 +20 10067039 . T . . END=10067040 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:45:35:0,45,675 +20 10067041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:36:42:36:0,42,630 +20 10067042 . A . . END=10067043 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:39:33:0,39,585 +20 10067044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:32:36:32:0,36,540 +20 10067045 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:33:33:0,33,495 +20 10067046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,102,1530 ./.:33:30:33:0,30,450 +20 10067047 . A . . END=10067048 GT:DP:GQ:MIN_DP:PL ./.:51:96:50:0,96,1440 ./.:32:24:30:0,24,360 +20 10067049 . TAAAAAAAAA T,TA,TAA,TAAAAAA, . . BaseQRankSum=0.177;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=310256,99;ReadPosRankSum=-1.322e+00 GT:AD:DP:GQ:PL:SB ./.:2,4,7,9,0,0:22:99:651,365,925,164,381,340,135,101,0,106,443,591,394,170,627,443,591,394,170,627,627:1,1,12,8 ./.:1,0,0,8,9,0:18:99:571,593,696,593,696,696,324,443,443,502,248,276,276,0,237,593,696,696,443,276,696:0,1,9,8 +20 10067050 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067051 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067052 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067053 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067054 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067055 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067056 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067057 . A *, . . DP=102 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,9,0:22:99:.:651,135,106,443,170,627:1,1,12,8 ./.:.:33:0:33:0,0,485,0,485,485 +20 10067058 . A *, . . DP=103 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,9,0:22:99:.:651,135,106,443,170,627:1,1,12,8 ./.:.:34:75:34:0,75,1125,75,1125,1125 +20 10067059 . A . . END=10067060 GT:DP:GQ:MIN_DP:PL ./.:57:99:50:0,99,1485 ./.:34:75:34:0,75,1125 +20 10067061 . A . . END=10067066 GT:DP:GQ:MIN_DP:PL ./.:57:99:50:0,99,1485 ./.:36:81:34:0,81,1215 +20 10067067 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:50:0,99,1485 ./.:35:93:35:0,93,1395 +20 10067068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:33:70:33:0,70,1002 +20 10067069 . A . . END=10067070 GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:36:90:34:0,90,1350 +20 10067071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:36:90:34:0,90,1350 +20 10067072 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:47:37:0,47,1098 +20 10067073 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:36:87:36:0,87,1091 +20 10067074 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:38:63:38:0,63,1092 +20 10067075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:96:37:0,96,1440 +20 10067076 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:69:37:0,69,1056 +20 10067077 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:37:79:37:0,79,1096 +20 10067078 . G . . END=10067079 GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:90:34:0,90,1350 +20 10067080 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:82:35:0,82,1059 +20 10067081 . A . . END=10067082 GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:90:34:0,90,1350 +20 10067083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:72:35:0,72,1022 +20 10067084 . T . . END=10067089 GT:DP:GQ:MIN_DP:PL ./.:48:99:46:0,102,1530 ./.:35:93:34:0,93,1395 +20 10067090 . C A, . . DP=85;ExcessHet=3.01;RAW_MQandDP=273948,85 GT:AD:DP:GQ:PL:SB ./.:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 ./.:0,30,0:30:90:969,90,0,969,90,969:0,0,15,15 +20 10067091 . T . . END=10067095 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1063 +20 10067096 . A . . END=10067097 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:35:93:35:0,93,1036 +20 10067098 . T . . END=10067099 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,102,993 +20 10067100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:86:34:0,86,1013 +20 10067101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:96:32:0,96,1016 +20 10067102 . A . . END=10067105 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:35:0,105,1072 +20 10067106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:91:36:0,91,1085 +20 10067107 . T . . END=10067109 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10067110 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:91:36:0,91,1082 +20 10067111 . A . . END=10067112 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10067113 . T . . END=10067114 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:90:36:0,90,1078 +20 10067115 . A . . END=10067120 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:35:99:34:0,99,1485 +20 10067121 . G . . END=10067122 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:96:35:0,96,1049 +20 10067123 . G . . END=10067128 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:35:0,99,1485 +20 10067129 . T . . END=10067130 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:31:90:30:0,90,897 +20 10067131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:99:33:0,99,1018 +20 10067132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:43:34:0,43,910 +20 10067133 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10067134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:66:33:0,66,922 +20 10067135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10067136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:66:33:0,66,929 +20 10067137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:57:34:0,57,953 +20 10067138 . G . . END=10067141 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:72:35:0,72,965 +20 10067142 . C . . END=10067145 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:80:38:0,80,1032 +20 10067146 . A . . END=10067170 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:40:99:37:0,100,1066 +20 10067171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:68:37:0,68,1035 +20 10067172 . G . . END=10067175 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:99:36:0,108,1111 +20 10067176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:98:38:0,98,1089 +20 10067177 . C . . END=10067183 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:38:0,100,1148 +20 10067184 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:81:39:0,81,1089 +20 10067185 . T . . END=10067187 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:99:37:0,99,1164 +20 10067188 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:87:38:0,87,1102 +20 10067189 . T . . END=10067196 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:37:0,105,1133 +20 10067197 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:92:39:0,92,1144 +20 10067198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:40:99:40:0,111,1665 +20 10067199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:88:39:0,88,1165 +20 10067200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:99:37:0,108,1620 +20 10067201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:95:38:0,95,1140 +20 10067202 . C . . END=10067207 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:38:0,105,1575 +20 10067208 . A . . END=10067210 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:94:36:0,94,1068 +20 10067211 . A . . END=10067216 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:84:34:0,84,1260 +20 10067217 . G . . END=10067220 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:96:36:0,96,1440 +20 10067221 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:31:68:31:0,68,923 +20 10067222 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:99:33:0,99,1007 +20 10067223 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:82:33:0,82,1006 +20 10067224 . G . . END=10067238 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:90:32:0,90,1350 +20 10067239 . T . . END=10067243 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:87:32:0,87,1010 +20 10067244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10067245 . A . . END=10067246 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:84:32:0,84,1260 +20 10067247 . A . . END=10067256 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:90:32:0,90,1350 +20 10067257 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:83:33:0,83,974 +20 10067258 . A . . END=10067261 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:33:0,99,1020 +20 10067262 . G . . END=10067263 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10067264 . G A, . . BaseQRankSum=0.369;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=376082,106;ReadPosRankSum=-4.930e-01 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 ./.:20,13,0:33:99:319,0,534,379,573,952:8,12,7,6 +20 10067265 . C . . END=10067280 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:93:33:0,93,1395 +20 10067281 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:66:33:0,66,985 +20 10067282 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:31:59:31:0,59,932 +20 10067283 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:68:33:0,68,991 +20 10067284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:70:34:0,70,1047 +20 10067285 . G . . END=10067286 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:67:34:0,67,1018 +20 10067287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:90:34:0,90,1350 +20 10067288 . A . . END=10067297 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:80:32:0,80,986 +20 10067298 . A . . END=10067299 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:32:90:30:0,90,877 +20 10067300 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:30:72:30:0,72,842 +20 10067301 . G . . END=10067304 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:90:31:0,90,1350 +20 10067305 . G . . END=10067309 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:99:34:0,99,1485 +20 10067310 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:74:36:0,74,1056 +20 10067311 . T . . END=10067318 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:33:0,99,1042 +20 10067319 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:97:36:0,97,1111 +20 10067320 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:50:36:0,50,969 +20 10067321 . A . . END=10067323 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:91:36:0,91,1116 +20 10067324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:36:0,99,1485 +20 10067325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:95:37:0,95,1059 +20 10067326 . C . . END=10067328 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:36:0,102,1530 +20 10067329 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:83:36:0,83,1077 +20 10067330 . T . . END=10067334 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:35:0,99,1060 +20 10067335 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:85:36:0,85,1040 +20 10067336 . C . . END=10067337 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:36:0,99,1485 +20 10067338 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:83:38:0,83,1066 +20 10067339 . A . . END=10067447 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:45:99:37:0,102,1107 +20 10067448 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:47:96:47:0,96,1399 +20 10067449 . G . . END=10067545 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:45:99:38:0,100,1191 +20 10067546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:90:37:0,90,1105 +20 10067547 . C . . END=10067549 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:37:0,99,1485 +20 10067550 . G . . END=10067557 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:93:35:0,93,1081 +20 10067558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:77:35:0,77,1040 +20 10067559 . A . . END=10067566 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:96:33:0,96,1111 +20 10067567 . A . . END=10067586 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:99:36:0,102,1530 +20 10067587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:90:36:0,90,1053 +20 10067588 . G . . END=10067600 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:99:34:0,99,1485 +20 10067601 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:98:39:0,98,1182 +20 10067602 . G . . END=10067624 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:99:37:0,108,1165 +20 10067625 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:41:95:41:0,95,1169 +20 10067626 . A . . END=10067640 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:40:99:36:0,99,1485 +20 10067641 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:96:34:0,96,1440 +20 10067642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:99:35:0,99,1485 +20 10067643 . A . . END=10067656 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:90:32:0,90,1045 +20 10067657 . G . . END=10067658 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:36:0,99,1485 +20 10067659 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:81:33:0,81,941 +20 10067660 . T . . END=10067674 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:99:34:0,99,1049 +20 10067675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:96:36:0,96,1064 +20 10067676 . G . . END=10067716 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:99:36:0,99,1083 +20 10067717 . C . . END=10067719 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:96:37:0,96,1440 +20 10067720 . C . . END=10067721 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:37:0,102,1530 +20 10067722 . A C, . . DP=92;ExcessHet=3.01;RAW_MQandDP=331200,92 GT:AD:DP:GQ:PL:SB ./.:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 ./.:0,38,0:38:99:1185,114,0,1185,114,1185:0,0,19,19 +20 10067723 . C . . END=10067728 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:35:0,99,1485 +20 10067729 . A . . END=10067730 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:96:36:0,96,1440 +20 10067731 . C . . END=10067752 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:36:0,99,1485 +20 10067753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:89:37:0,89,1106 +20 10067754 . T . . END=10067756 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:99:37:0,102,1530 +20 10067757 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:96:38:0,96,1125 +20 10067758 . T . . END=10067764 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:37:0,99,1117 +20 10067765 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:37:0,93,1086 +20 10067766 . C . . END=10067770 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:38:0,105,1575 +20 10067771 . G . . END=10067772 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:92:37:0,92,1052 +20 10067773 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:83:38:0,83,1035 +20 10067774 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:97:38:0,97,1052 +20 10067775 . C . . END=10067814 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:40:99:35:0,102,1044 +20 10067815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:41:93:41:0,93,1201 +20 10067816 . A . . END=10067832 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:41:99:36:0,106,1099 +20 10067833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:42:97:42:0,97,1234 +20 10067834 . T . . END=10067882 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:44:99:42:0,111,1301 +20 10067883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:42:98:42:0,98,1282 +20 10067884 . A . . END=10067953 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:36:0,99,1132 +20 10067954 . T . . END=10067955 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:90:38:0,90,1124 +20 10067956 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:38:0,105,1575 +20 10067957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:96:38:0,96,1107 +20 10067958 . A . . END=10067983 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:36:0,99,1120 +20 10067984 . T . . END=10067987 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:35:0,93,974 +20 10067988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:87:39:0,87,1041 +20 10067989 . A . . END=10067991 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:36:0,99,1485 +20 10067992 . C . . END=10067994 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:35:0,93,970 +20 10067995 . T . . END=10067998 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:99:36:0,99,1485 +20 10067999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:78:35:0,78,968 +20 10068000 . G . . END=10068002 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:99:35:0,99,1485 +20 10068003 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:34:84:34:0,84,931 +20 10068004 . A . . END=10068009 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:90:33:0,90,1350 +20 10068010 . T . . END=10068014 GT:DP:GQ:MIN_DP:PL ./.:39:90:38:0,90,1350 ./.:35:90:33:0,90,1350 +20 10068015 . T . . END=10068017 GT:DP:GQ:MIN_DP:PL ./.:37:84:34:0,84,1260 ./.:35:90:33:0,90,1350 +20 10068018 . T . . END=10068019 GT:DP:GQ:MIN_DP:PL ./.:37:84:34:0,84,1260 ./.:36:99:35:0,99,1485 +20 10068020 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:36:99:35:0,99,1485 +20 10068021 . A . . . GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1260 ./.:34:96:34:0,96,1440 +20 10068022 . A . . . GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1260 ./.:35:99:35:0,99,1485 +20 10068023 . A . . END=10068025 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:34:82:33:0,82,976 +20 10068026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:36:93:36:0,93,1090 +20 10068027 . T . . END=10068028 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:37:99:37:0,99,1139 +20 10068029 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1035 ./.:37:83:37:0,83,1041 +20 10068030 . G . . END=10068033 GT:DP:GQ:MIN_DP:PL ./.:32:72:32:0,72,1080 ./.:37:96:35:0,96,1440 +20 10068034 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:35:12:35:0,12,845 +20 10068035 . G . . END=10068036 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:34:96:34:0,96,1440 +20 10068037 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:34:83:34:0,83,988 +20 10068038 . G . . END=10068040 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:32:93:31:0,93,953 +20 10068041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:93:31:0,93,953 +20 10068042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:71:32:0,71,900 +20 10068043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:93:31:0,93,935 +20 10068044 . T . . END=10068045 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:31:0,93,935 +20 10068046 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:78:31:0,78,907 +20 10068047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:32:0,93,1395 +20 10068048 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:85:32:0,85,919 +20 10068049 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:93:31:0,93,968 +20 10068050 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:77:31:0,77,917 +20 10068051 . T . . END=10068055 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:32:0,93,990 +20 10068056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:74:32:0,74,908 +20 10068057 . C . . END=10068060 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:33:90:32:0,90,959 +20 10068061 . T . . END=10068063 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:34:87:34:0,87,1305 +20 10068064 . C . . END=10068065 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:35:90:35:0,90,1350 +20 10068066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:35:87:35:0,87,1066 +20 10068067 . A . . END=10068068 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:34:90:33:0,90,1350 +20 10068069 . A . . END=10068071 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:87:31:0,87,1305 +20 10068072 . T . . END=10068077 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:90:32:0,90,1350 +20 10068078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:82:32:0,82,965 +20 10068079 . A . . END=10068080 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:90:30:0,90,948 +20 10068081 . T . . END=10068084 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:84:30:0,84,1260 +20 10068085 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:71:29:0,71,866 +20 10068086 . C . . END=10068090 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:84:31:0,84,1260 +20 10068091 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:78:30:0,78,938 +20 10068092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:81:30:0,81,1215 +20 10068093 . C . . END=10068101 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:70:28:0,70,839 +20 10068102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:55:29:0,55,789 +20 10068103 . A . . END=10068105 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:28:81:27:0,81,807 +20 10068106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:27:53:27:0,53,807 +20 10068107 . A . . END=10068108 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:27:81:27:0,81,872 +20 10068109 . T . . END=10068118 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:72:27:0,72,1080 +20 10068119 . T . . END=10068120 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:81:32:0,81,1215 +20 10068121 . T . . END=10068124 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:76:29:0,76,943 +20 10068125 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:28:68:28:0,68,786 +20 10068126 . A . . END=10068128 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:72:29:0,72,1080 +20 10068129 . T . . END=10068135 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:60:28:0,60,900 +20 10068136 . A . . END=10068138 GT:DP:GQ:MIN_DP:PL ./.:40:87:40:0,87,1305 ./.:30:60:28:0,60,900 +20 10068139 . T . . END=10068141 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:30:60:28:0,60,900 +20 10068142 . C . . END=10068148 GT:DP:GQ:MIN_DP:PL ./.:35:81:31:0,81,1215 ./.:30:60:28:0,60,900 +20 10068149 . T . . . GT:DP:GQ:MIN_DP:PL ./.:31:75:31:0,75,1125 ./.:30:60:28:0,60,900 +20 10068150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:75:31:0,75,1125 ./.:31:57:30:0,57,855 +20 10068151 . A . . END=10068154 GT:DP:GQ:MIN_DP:PL ./.:29:63:28:0,63,945 ./.:31:57:30:0,57,855 +20 10068155 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:63:28:0,63,945 ./.:30:47:30:0,47,863 +20 10068156 . A . . END=10068157 GT:DP:GQ:MIN_DP:PL ./.:27:57:27:0,57,855 ./.:34:51:33:0,51,765 +20 10068158 . GTGTATATATATA G, . . BaseQRankSum=-6.520e-01;DP=60;ExcessHet=3.01;MQRankSum=0.328;RAW_MQandDP=93364,29;ReadPosRankSum=0.524 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,4,0:7:57:.:104,0,57,114,69,183:0,3,2,2 ./.:.:31:54:31:0,54,810,54,810,810 +20 10068159 . T *, . . DP=61 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,4,0:7:57:.:104,0,57,114,69,183:0,3,2,2 ./.:.:33:45:32:0,45,675,45,675,675 +20 10068160 . GTATATATATATGTA G,*, . . DP=60;ExcessHet=3.01;RAW_MQandDP=87005,28 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,4,0:6:53:.:735,162,131,102,0,53,507,174,108,472:0,0,2,4 ./.:.:33:45:32:0,45,675,45,675,675,45,675,675,675 +20 10068161 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068162 . A *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068163 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068164 . A *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068165 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:32:6:31:0,6,90,6,90,90 +20 10068166 . ATATATG *,A, . . BaseQRankSum=-9.800e-01;ClippingRankSum=0.00;DP=53;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=88000,25;ReadPosRankSum=-6.600e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0,0:6:53:.:.:735,162,131,507,174,472,507,174,472,472:0,0,2,4 ./.:2,0,9,0:11:22:0|1:10068166_ATATATG_A:218,224,273,0,49,22,224,273,49,273:2,0,3,6 +20 10068167 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0:6:53:.:.:735,162,131,507,174,472:0,0,2,4 ./.:2,9,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273:2,0,3,6 +20 10068168 . ATATG *,A, . . BaseQRankSum=0.447;ClippingRankSum=0.00;DP=53;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=88000,25;ReadPosRankSum=0.660 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0,0:6:53:.:.:735,162,131,507,174,472,507,174,472,472:0,0,2,4 ./.:9,0,2,0:11:22:1|0:10068166_ATATATG_A:22,49,273,0,224,218,49,273,224,273:3,6,2,0 +20 10068169 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0:6:53:.:.:735,162,131,507,174,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068170 . A *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0:6:53:.:.:735,162,131,507,174,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068171 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0:6:53:.:.:735,162,131,507,174,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068172 . G *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,2,0:6:53:.:.:735,162,131,507,174,472:0,0,2,4 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068173 . T *, . . DP=57 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:29:0:29:0,0,115,0,115,115 +20 10068174 . A *, . . DP=57 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,2,0:6:53:.:735,162,131,507,174,472:0,0,2,4 ./.:.:29:39:29:0,39,585,39,585,585 +20 10068175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:18:20:0,18,270 ./.:29:39:29:0,39,585 +20 10068176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:19:24:17:0,24,360 ./.:30:42:30:0,42,630 +20 10068177 . T . . END=10068180 GT:DP:GQ:MIN_DP:PL ./.:19:24:17:0,24,360 ./.:30:48:29:0,48,720 +20 10068181 . T . . END=10068184 GT:DP:GQ:MIN_DP:PL ./.:16:27:16:0,27,405 ./.:30:48:29:0,48,720 +20 10068185 . T . . . GT:DP:GQ:MIN_DP:PL ./.:16:27:16:0,27,405 ./.:30:51:30:0,51,765 +20 10068186 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:9:16:0,9,570 ./.:30:51:30:0,51,765 +20 10068187 . T . . . GT:DP:GQ:MIN_DP:PL ./.:16:27:15:0,27,405 ./.:30:51:30:0,51,765 +20 10068188 . A . . END=10068190 GT:DP:GQ:MIN_DP:PL ./.:16:27:15:0,27,405 ./.:29:54:29:0,54,810 +20 10068191 . T . . END=10068192 GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,289 ./.:29:54:29:0,54,810 +20 10068193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,289 ./.:30:57:30:0,57,855 +20 10068194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:30:57:30:0,57,855 +20 10068195 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,411 ./.:31:63:30:0,63,945 +20 10068196 . A . . . GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,437 ./.:31:63:30:0,63,945 +20 10068197 . T . . END=10068198 GT:DP:GQ:MIN_DP:PL ./.:13:36:12:0,36,476 ./.:31:63:30:0,63,945 +20 10068199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:27:37:27:0,37,739 +20 10068200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:45:16:0,45,675 ./.:27:69:27:0,69,1035 +20 10068201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:51:18:0,51,765 ./.:28:56:28:0,56,784 +20 10068202 . A . . END=10068203 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:28:73:27:0,73,837 +20 10068204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:29:81:29:0,81,1215 +20 10068205 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:28:78:28:0,78,1170 +20 10068206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:26:61:26:0,61,780 +20 10068207 . C . . END=10068208 GT:DP:GQ:MIN_DP:PL ./.:22:57:21:0,57,855 ./.:28:78:27:0,78,1170 +20 10068209 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:63:23:0,63,945 ./.:28:84:28:0,84,869 +20 10068210 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:29:69:29:0,69,852 +20 10068211 . C . . END=10068219 GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:30:80:30:0,80,955 +20 10068220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:29:0,81,1215 ./.:31:64:31:0,64,884 +20 10068221 . A . . END=10068223 GT:DP:GQ:MIN_DP:PL ./.:29:81:29:0,81,1215 ./.:33:93:33:0,93,1395 +20 10068224 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:29:0,81,1215 ./.:30:76:30:0,76,911 +20 10068225 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:31:90:30:0,90,903 +20 10068226 . T . . END=10068227 GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:90:30:0,90,903 +20 10068228 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:75:31:0,75,892 +20 10068229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:93:31:0,93,978 +20 10068230 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:32:69:32:0,69,869 +20 10068231 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:31:93:31:0,93,960 +20 10068232 . A . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:33:67:33:0,67,962 +20 10068233 . A . . END=10068237 GT:DP:GQ:MIN_DP:PL ./.:32:84:30:0,84,1260 ./.:35:99:34:0,99,992 +20 10068238 . T . . END=10068242 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:35:99:34:0,99,992 +20 10068243 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:37:95:37:0,95,1052 +20 10068244 . C . . END=10068247 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:43:99:36:0,100,1082 +20 10068248 . T . . END=10068290 GT:DP:GQ:MIN_DP:PL ./.:38:99:34:0,102,1384 ./.:43:99:36:0,100,1082 +20 10068291 . C . . END=10068299 GT:DP:GQ:MIN_DP:PL ./.:40:90:36:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068300 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:87:36:0,87,1305 ./.:43:99:36:0,100,1082 +20 10068301 . C . . END=10068308 GT:DP:GQ:MIN_DP:PL ./.:32:72:31:0,72,1080 ./.:43:99:36:0,100,1082 +20 10068309 . T . . END=10068312 GT:DP:GQ:MIN_DP:PL ./.:28:66:26:0,66,990 ./.:43:99:36:0,100,1082 +20 10068313 . A . . END=10068316 GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:43:99:36:0,100,1082 +20 10068317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:43:99:36:0,100,1082 +20 10068318 . C . . END=10068322 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:43:99:36:0,100,1082 +20 10068323 . T . . END=10068328 GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:43:99:36:0,100,1082 +20 10068330 . C . . END=10068338 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068339 . A . . END=10068347 GT:DP:GQ:MIN_DP:PL ./.:31:75:30:0,75,1125 ./.:43:99:36:0,100,1082 +20 10068348 . T . . END=10068352 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068353 . C . . END=10068355 GT:DP:GQ:MIN_DP:PL ./.:29:78:28:0,78,1170 ./.:43:99:36:0,100,1082 +20 10068356 . T . . END=10068361 GT:DP:GQ:MIN_DP:PL ./.:30:84:29:0,84,1260 ./.:43:99:36:0,100,1082 +20 10068362 . T . . END=10068364 GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068365 . G . . END=10068368 GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:43:99:36:0,100,1082 +20 10068369 . A . . END=10068370 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068371 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:98:38:0,98,1091 +20 10068372 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:85:38:0,85,1127 +20 10068373 . A . . END=10068400 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:38:0,102,1162 +20 10068401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:87:38:0,87,1146 +20 10068402 . A . . END=10068405 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:38:0,103,1213 +20 10068406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:89:39:0,89,1187 +20 10068407 . T . . END=10068412 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:37:0,102,1530 +20 10068413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:94:40:0,94,1270 +20 10068414 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:82:38:0,82,1144 +20 10068415 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:94:41:0,94,1290 +20 10068416 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,105,1575 +20 10068417 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:91:41:0,91,1289 +20 10068418 . A . . END=10068420 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:83:39:0,83,1214 +20 10068421 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:65:38:0,65,1064 +20 10068422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:87:40:0,87,1223 +20 10068423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:76:40:0,76,1217 +20 10068424 . G . . END=10068425 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:83:39:0,83,1176 +20 10068426 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:38:0,102,1530 +20 10068427 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:79:37:0,79,1176 +20 10068428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,102,1530 +20 10068429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:75:36:0,75,1093 +20 10068430 . A . . END=10068432 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1163 +20 10068433 . T . . END=10068436 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:37:0,105,1575 +20 10068437 . A . . END=10068438 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:90:37:0,90,1098 +20 10068439 . C . . END=10068442 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:36:0,105,1575 +20 10068443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:72:38:0,72,1086 +20 10068444 . A . . END=10068454 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:34:0,101,1048 +20 10068455 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:92:36:0,92,1051 +20 10068456 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:99:36:0,99,1485 +20 10068457 . C . . END=10068459 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:96:33:0,96,1440 +20 10068460 . A . . END=10068466 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:81:34:0,81,1049 +20 10068467 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:78:31:0,78,881 +20 10068468 . A . . END=10068470 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:87:32:0,87,1305 +20 10068471 . T . . END=10068473 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,955 +20 10068474 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:99:33:0,99,1024 +20 10068475 . T . . END=10068477 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:96:32:0,96,1013 +20 10068478 . T . . END=10068483 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:99:34:0,102,1084 +20 10068484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:93:37:0,93,1101 +20 10068485 . A . . END=10068486 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,105,1575 +20 10068487 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:92:36:0,92,1139 +20 10068488 . T . . END=10068493 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:99:36:0,105,1132 +20 10068494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:89:39:0,89,1128 +20 10068495 . A . . END=10068499 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:38:0,102,1183 +20 10068500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:94:39:0,94,1162 +20 10068501 . C . . END=10068521 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:37:0,99,1134 +20 10068522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:90:38:0,90,1134 +20 10068523 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:86:38:0,86,1162 +20 10068524 . G . . END=10068533 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:37:0,99,1100 +20 10068534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:89:36:0,89,1062 +20 10068535 . T . . END=10068545 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:37:0,102,1139 +20 10068546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:82:40:0,82,1117 +20 10068547 . A . . END=10068556 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:39:0,105,1265 +20 10068557 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:85:40:0,85,1188 +20 10068558 . G . . END=10068560 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:91:42:0,91,1262 +20 10068561 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1304 +20 10068562 . A . . END=10068563 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1261 +20 10068564 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:73:42:0,73,1248 +20 10068565 . T . . END=10068566 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:99:41:0,120,1800 +20 10068567 . G . . END=10068568 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:84:41:0,84,1197 +20 10068569 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:96:43:0,96,1265 +20 10068570 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:84:44:0,84,1255 +20 10068571 . T . . END=10068572 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1316 +20 10068573 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:99:44:0,120,1800 +20 10068574 . T . . END=10068575 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1311 +20 10068576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1355 +20 10068577 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1288 +20 10068578 . T . . END=10068579 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,102,1323 +20 10068580 . G . . END=10068581 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1207 +20 10068582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,120,1800 +20 10068583 . C . . END=10068584 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1193 +20 10068585 . G . . END=10068586 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:86:40:0,86,1180 +20 10068587 . C . . END=10068588 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:90:41:0,90,1154 +20 10068589 . T . . END=10068591 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:99:40:0,120,1280 +20 10068592 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:93:42:0,93,1194 +20 10068593 . G . . END=10068594 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:75:40:0,75,1169 +20 10068595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:99:43:0,107,1244 +20 10068596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:96:43:0,96,1269 +20 10068597 . T . . END=10068601 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:44:0,99,1312 +20 10068602 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:84:45:0,84,1234 +20 10068603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:92:45:0,92,1221 +20 10068604 . C . . END=10068606 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1296 +20 10068607 . C . . END=10068608 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:94:43:0,94,1240 +20 10068609 . T . . END=10068617 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:99:45:0,102,1261 +20 10068618 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:93:46:0,93,1337 +20 10068619 . A . . END=10068624 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:99:44:0,99,1259 +20 10068625 . C . . END=10068626 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:96:43:0,96,1209 +20 10068627 . T . . END=10068628 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:44:0,99,1285 +20 10068629 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:76:43:0,76,1163 +20 10068630 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,111,1203 +20 10068631 . A . . END=10068632 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:90:41:0,90,1189 +20 10068633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:77:40:0,77,1127 +20 10068634 . T . . END=10068636 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:87:40:0,87,1146 +20 10068637 . C . . END=10068638 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:39:0,99,1485 +20 10068639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:68:40:0,68,1135 +20 10068640 . G . . END=10068641 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1107 +20 10068642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:78:37:0,78,1085 +20 10068643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:82:38:0,82,1139 +20 10068644 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:96:35:0,96,1440 +20 10068645 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:72:35:0,72,1015 +20 10068646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:87:33:0,87,965 +20 10068647 . G . . END=10068648 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:70:34:0,70,933 +20 10068649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:96:35:0,96,1440 +20 10068650 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:99:35:0,99,1485 +20 10068651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:56:36:0,56,975 +20 10068652 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:75:36:0,75,1022 +20 10068653 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:60:37:0,60,1005 +20 10068654 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:84:39:0,84,1112 +20 10068655 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,111,1665 +20 10068656 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:88:40:0,88,1136 +20 10068657 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,114,1710 +20 10068658 . T . . END=10068659 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1109 +20 10068660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:76:40:0,76,1107 +20 10068661 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,111,1154 +20 10068662 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:62:39:0,62,1075 +20 10068663 . A . . END=10068664 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1110 +20 10068665 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:70:40:0,70,1086 +20 10068666 . T . . END=10068667 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1109 +20 10068668 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,105,1575 +20 10068669 . G . . END=10068670 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:80:38:0,80,1097 +20 10068671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:90:41:0,90,1165 +20 10068672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:89:41:0,89,1205 +20 10068673 . G . . END=10068674 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,99,1485 +20 10068675 . G . . END=10068676 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:84:36:0,84,1039 +20 10068677 . T . . END=10068686 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:90:32:0,90,1350 +20 10068687 . G . . END=10068690 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:87:32:0,87,1305 +20 10068691 . T . . END=10068694 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,1350 +20 10068695 . G . . END=10068696 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:87:32:0,87,1305 +20 10068697 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:90:33:0,90,1350 +20 10068698 . A . . END=10068710 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:81:28:0,81,989 +20 10068711 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:73:29:0,73,807 +20 10068712 . C . . END=10068718 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:81:28:0,81,1215 +20 10068719 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068720 . A . . END=10068727 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:30:87:29:0,87,943 +20 10068728 . A . . END=10068732 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068733 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:87:29:0,87,932 +20 10068734 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068735 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:81:32:0,81,973 +20 10068736 . G . . END=10068737 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,1350 +20 10068738 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:98:60:0,98,2062 ./.:33:87:32:0,87,1305 +20 10068739 . A . . END=10068741 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:87:32:0,87,1305 +20 10068742 . C . . END=10068747 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:90:33:0,90,1350 +20 10068748 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:83:32:0,83,996 +20 10068749 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10068750 . A . . END=10068759 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:81:31:0,81,1215 +20 10068760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:75:29:0,75,923 +20 10068761 . A . . END=10068763 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:81:28:0,81,1215 +20 10068764 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:73:30:0,73,931 +20 10068765 . A . . END=10068773 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:81:29:0,81,1215 +20 10068774 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:78:30:0,78,908 +20 10068775 . C . . END=10068781 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:84:29:0,84,880 +20 10068782 . G . . END=10068789 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:90:30:0,90,908 +20 10068790 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:84:31:0,84,1260 +20 10068791 . T . . END=10068808 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:72:25:0,72,773 +20 10068809 . A . . END=10068813 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:28:81:27:0,81,874 +20 10068814 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:28:73:28:0,73,861 +20 10068815 . A . . END=10068818 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:82:28:0,82,862 +20 10068819 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:93:33:0,93,1395 +20 10068820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10068821 . A . . END=10068822 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:96:34:0,96,1440 +20 10068823 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10068824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:67:35:0,67,963 +20 10068825 . A . . END=10068863 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:99:35:0,99,1153 +20 10068864 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:91:40:0,91,1086 +20 10068865 . C . . END=10068866 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:41:99:40:0,111,1665 +20 10068867 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:90:40:0,90,1147 +20 10068868 . A . . END=10068875 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:99:38:0,104,1156 +20 10068876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:41:94:41:0,94,1191 +20 10068877 . A . . END=10068879 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:99:38:0,100,1121 +20 10068880 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:72:39:0,72,1066 +20 10068881 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:63:39:0,63,1072 +20 10068882 . A . . END=10068886 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10068887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:95:37:0,95,1070 +20 10068888 . A . . END=10068889 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10068890 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:36:59:36:0,59,1000 +20 10068891 . T . . END=10068892 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:92:35:0,92,998 +20 10068893 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:59:34:0,59,961 +20 10068894 . T . . END=10068896 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:34:0,99,1485 +20 10068897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:71:34:0,71,900 +20 10068898 . C . . END=10068899 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10068900 . G . . END=10068901 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:85:35:0,85,993 +20 10068902 . C . . END=10068906 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:33:0,99,1015 +20 10068907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:85:34:0,85,987 +20 10068908 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:64:35:0,64,972 +20 10068909 . A . . END=10068912 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10068913 . G . . END=10068914 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:96:32:0,96,998 +20 10068915 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:85:34:0,85,983 +20 10068916 . T . . END=10068925 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:33:0,99,1009 +20 10068926 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:96:34:0,96,1440 +20 10068927 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:87:34:0,87,976 +20 10068928 . G . . END=10068932 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10068933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:67:32:0,67,951 +20 10068934 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10068935 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:89:35:0,89,1020 +20 10068936 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10068937 . T . . END=10068938 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:87:34:0,87,1305 +20 10068939 . A . . END=10068940 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10068941 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:79:32:0,79,936 +20 10068942 . A . . END=10068945 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10068946 . G . . END=10068949 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:81:31:0,81,1215 +20 10068950 . A . . END=10068958 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:75:29:0,75,1125 +20 10068959 . A . . END=10068973 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:26:60:24:0,60,900 +20 10068974 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:24:57:24:0,57,855 +20 10068975 . A . . END=10068980 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:26:60:25:0,60,766 +20 10068981 . G A, . . DP=87;ExcessHet=3.01;RAW_MQandDP=313200,87 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 ./.:0,26,0:26:78:845,78,0,845,78,845:0,0,14,12 +20 10068982 . A . . END=10068983 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:69:25:0,69,1035 +20 10068984 . A . . END=10068991 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:72:24:0,72,772 +20 10068992 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:26:0,62,774 +20 10068993 . A . . END=10069002 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,793 +20 10069003 . A . . END=10069006 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:27:0,81,827 +20 10069007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:69:27:0,69,830 +20 10069008 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:75:27:0,75,1125 +20 10069009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:53:27:0,53,829 +20 10069010 . C . . END=10069024 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:72:25:0,72,802 +20 10069025 . C . . END=10069028 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:81:27:0,81,812 +20 10069029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:78:26:0,78,813 +20 10069030 . C . . END=10069031 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:25:0,62,700 +20 10069032 . A . . END=10069038 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:72:26:0,72,786 +20 10069039 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:68:27:0,68,759 +20 10069040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:26:0,72,1080 +20 10069041 . C . . END=10069044 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:26:0,62,739 +20 10069045 . G . . END=10069062 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,812 +20 10069063 . C . . END=10069069 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:27:0,81,847 +20 10069070 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:63:30:0,63,825 +20 10069071 . A . . END=10069078 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:81:29:0,81,1215 +20 10069079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,865 +20 10069080 . T . . END=10069082 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:84:29:0,84,1260 +20 10069083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:76:30:0,76,909 +20 10069084 . C . . END=10069089 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:28:0,81,856 +20 10069090 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069091 . A . . END=10069092 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:87:32:0,87,1305 +20 10069093 . A . . END=10069099 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069100 . A . . END=10069115 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:99:33:0,99,989 +20 10069116 . A . . END=10069119 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:96:34:0,96,1440 +20 10069120 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:81:35:0,81,1003 +20 10069121 . A . . END=10069122 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10069123 . G . . END=10069124 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:99:36:0,99,1485 +20 10069125 . G . . END=10069128 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:34:0,90,1350 +20 10069129 . A . . END=10069131 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:81:33:0,81,1007 +20 10069132 . G . . END=10069135 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:33:0,90,986 +20 10069136 . G . . END=10069144 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:84:29:0,84,1260 +20 10069145 . A . . END=10069167 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:31:0,90,955 +20 10069168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:74:32:0,74,1015 +20 10069169 . G . . END=10069174 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:75:32:0,75,1016 +20 10069176 . G . . END=10069180 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069181 . T . . END=10069183 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069184 . T . . END=10069188 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069190 . T . . END=10069211 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1117 +20 10069212 . A . . END=10069217 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:34:0,99,1485 +20 10069218 . G . . END=10069219 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:93:34:0,93,1395 +20 10069220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:77:34:0,77,1026 +20 10069221 . G . . END=10069230 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:93:32:0,93,1065 +20 10069231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:88:33:0,88,1039 +20 10069232 . G . . END=10069233 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:93:33:0,93,1395 +20 10069234 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:87:33:0,87,1005 +20 10069235 . C . . END=10069239 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:90:33:0,90,1350 +20 10069240 . C . . END=10069245 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:81:32:0,81,1215 +20 10069246 . A . . END=10069250 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:78:30:0,78,1170 +20 10069251 . T . . END=10069254 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:81:29:0,81,1215 +20 10069255 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:49:27:0,49,768 +20 10069256 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:28:0,81,1215 +20 10069257 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:78:26:0,78,832 +20 10069258 . T . . END=10069259 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:81:27:0,81,847 +20 10069260 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:78:27:0,78,1170 +20 10069261 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:66:28:0,66,859 +20 10069262 . T . . END=10069284 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:72:25:0,72,804 +20 10069285 . T . . END=10069287 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:66:26:0,66,807 +20 10069288 . A . . END=10069297 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:26:0,72,1080 +20 10069298 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:41:25:0,41,719 +20 10069299 . G . . END=10069303 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:72:25:0,72,1080 +20 10069304 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:23:69:23:0,69,734 +20 10069305 . T . . END=10069327 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,726 +20 10069328 . T . . END=10069330 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:69:23:0,69,722 +20 10069331 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:46:24:0,46,694 +20 10069332 . T . . END=10069343 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:60:24:0,60,900 +20 10069344 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:57:25:0,57,855 +20 10069345 . G . . END=10069349 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:60:24:0,60,900 +20 10069350 . G . . END=10069351 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:48:25:0,48,707 +20 10069352 . G . . END=10069353 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:63:22:0,63,945 +20 10069354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:22:52:22:0,52,621 +20 10069355 . T . . END=10069357 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:63:23:0,63,945 +20 10069358 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:43:26:0,43,669 +20 10069359 . T . . END=10069364 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,757 +20 10069365 . T . . END=10069372 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:27:0,81,790 +20 10069373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,869 +20 10069374 . A . . END=10069375 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:84:30:0,84,1260 +20 10069376 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,876 +20 10069377 . A . . END=10069385 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:84:29:0,84,1260 +20 10069386 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:71:30:0,71,848 +20 10069387 . T . . END=10069403 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:81:28:0,81,902 +20 10069404 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:69:28:0,69,810 +20 10069405 . T . . END=10069411 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:70:26:0,70,807 +20 10069412 . A . . END=10069418 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:27:0,81,827 +20 10069419 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:59:29:0,59,837 +20 10069420 . C . . END=10069421 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:30:0,90,910 +20 10069422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:75:30:0,75,880 +20 10069423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:66:31:0,66,909 +20 10069424 . T . . END=10069427 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:30:0,90,946 +20 10069428 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:87:30:0,87,1305 +20 10069429 . C . . END=10069430 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:31:0,90,1350 +20 10069431 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069432 . T . . END=10069443 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1350 +20 10069444 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:78:32:0,78,903 +20 10069445 . G . . END=10069453 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:31:0,90,940 +20 10069454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:86:33:0,86,1001 +20 10069455 . T . . END=10069457 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:93:33:0,93,1395 +20 10069458 . T . . END=10069465 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1004 +20 10069466 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:88:35:0,88,967 +20 10069467 . T . . END=10069485 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:35:0,102,1090 +20 10069486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:93:40:0,93,1150 +20 10069487 . G . . END=10069493 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:39:0,99,1485 +20 10069494 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:92:40:0,92,1216 +20 10069495 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:77:41:0,77,1152 +20 10069496 . G . . END=10069509 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,99,1485 +20 10069510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:77:37:0,77,1009 +20 10069511 . T . . END=10069517 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,102,1112 +20 10069518 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:95:37:0,95,1101 +20 10069519 . C . . END=10069524 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:35:0,105,1114 +20 10069525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:78:39:0,78,1141 +20 10069526 . T . . END=10069537 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:38:0,104,1165 +20 10069538 . G . . END=10069539 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:44:92:43:0,92,1207 +20 10069540 . A . . END=10070051 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:47:99:37:0,99,1163 +20 10070052 . G . . END=10070057 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:33:0,93,1395 +20 10070058 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:38:0,102,1530 +20 10070059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:92:37:0,92,1128 +20 10070060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:99:36:0,102,1530 +20 10070061 . T . . END=10070063 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10070064 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:37:0,102,1530 +20 10070065 . A . . END=10070068 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:34:0,93,1395 +20 10070069 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:87:35:0,87,1078 +20 10070070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:96:37:0,96,1440 +20 10070071 . T . . END=10070073 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:87:35:0,87,953 +20 10070075 . T . . END=10070077 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:32:0,93,1395 +20 10070078 . G . . END=10070079 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:80:37:0,80,1068 +20 10070081 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070082 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:89:35:0,89,1081 +20 10070083 . T . . END=10070098 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:34:0,99,956 +20 10070099 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:96:37:0,96,1081 +20 10070100 . T . . END=10070105 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:37:0,105,1575 +20 10070106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:91:37:0,91,1037 +20 10070107 . C . . END=10070155 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:36:0,102,1165 +20 10070156 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:85:36:0,85,1056 +20 10070157 . G . . END=10070162 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1000 +20 10070163 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:96:34:0,96,1440 +20 10070164 . C . . END=10070171 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1002 +20 10070172 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:76:34:0,76,965 +20 10070173 . C . . END=10070192 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:35:0,102,1232 +20 10070193 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:85:39:0,85,1117 +20 10070194 . G . . END=10070233 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:36:0,101,1123 +20 10070234 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:93:39:0,93,1151 +20 10070235 . G . . END=10070259 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,99,1090 +20 10070260 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:94:41:0,94,1207 +20 10070261 . A . . END=10070263 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,99,1485 +20 10070264 . A . . END=10070265 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:92:35:0,92,1023 +20 10070266 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:89:35:0,89,1039 +20 10070267 . T . . END=10070272 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:34:0,96,1440 +20 10070273 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070274 . A . . END=10070279 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:90:32:0,90,1033 +20 10070280 . G . . END=10070287 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:35:0,99,1485 +20 10070288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:93:37:0,93,1055 +20 10070289 . C . . END=10070314 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,103,1113 +20 10070315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:88:40:0,88,1170 +20 10070316 . T . . END=10070328 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:38:0,102,1530 +20 10070329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:67:38:0,67,1133 +20 10070330 . T . . END=10070335 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,105,1575 +20 10070336 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:97:38:0,97,1127 +20 10070337 . C . . END=10070356 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:34:0,102,1083 +20 10070357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:84:38:0,84,1175 +20 10070358 . A . . END=10070366 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,102,1530 +20 10070367 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:94:39:0,94,1172 +20 10070368 . A . . END=10070371 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,102,1131 +20 10070372 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:66:37:0,66,992 +20 10070373 . C . . END=10070412 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:37:0,102,1153 +20 10070413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:92:40:0,92,1190 +20 10070414 . C . . END=10070421 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:39:0,102,1530 +20 10070422 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:96:39:0,96,1440 +20 10070423 . C . . END=10070425 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070426 . G . . END=10070435 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:34:0,90,1071 +20 10070436 . A . . END=10070441 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:37:0,99,1485 +20 10070442 . C . . END=10070443 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:94:37:0,94,1101 +20 10070444 . C . . END=10070493 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:36:0,101,1088 +20 10070494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:88:39:0,88,1182 +20 10070495 . C . . END=10070520 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:36:0,100,1111 +20 10070521 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:85:37:0,85,1074 +20 10070522 . G . . END=10070533 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,99,1129 +20 10070534 . T . . END=10070543 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:33:0,90,1350 +20 10070544 . T . . END=10070545 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:86:33:0,86,1014 +20 10070546 . T . . END=10070553 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:93:33:0,93,1395 +20 10070554 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:88:33:0,88,989 +20 10070555 . G . . END=10070564 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1350 +20 10070565 . G . . END=10070601 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:36:0,105,1144 +20 10070602 . T C, . . BaseQRankSum=-3.081e+00;ClippingRankSum=0.00;DP=112;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=392164,112;ReadPosRankSum=-6.890e-01 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 ./.:21,19,0:40:99:475,0,592,538,649,1187:13,8,8,11 +20 10070603 . A . . END=10070632 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:40:99:38:0,104,1138 +20 10070633 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:42:91:42:0,91,1277 +20 10070634 . G . . END=10070651 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:45:99:43:0,120,1800 +20 10070652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:44:98:44:0,98,1334 +20 10070653 . T . . END=10070893 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:45:99:40:0,99,1230 +20 10070894 . C . . END=10070896 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:41:93:41:0,93,1395 +20 10070897 . G . . END=10070911 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:39:81:39:0,81,1215 +20 10070912 . A . . END=10070914 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:39:78:38:0,78,1170 +20 10070915 . A . . END=10070917 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:40:81:39:0,81,1215 +20 10070918 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:39:75:39:0,75,1125 +20 10070919 . T . . END=10070928 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:40:60:38:0,60,900 +20 10070929 . A . . END=10070932 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:42:57:41:0,57,855 +20 10070933 . C . . END=10070935 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,120,1800 ./.:43:62:43:0,62,945 +20 10070936 . T A, . . BaseQRankSum=-1.071e+00;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=427233,122;ReadPosRankSum=0.014 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 ./.:21,19,0:40:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,12,7,12 +20 10070937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:80:0,120,1800 ./.:43:63:43:0,63,945 +20 10070938 . G GA, . . BaseQRankSum=-8.020e-01;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=412764,117;ReadPosRankSum=-5.400e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 ./.:19,19,0:38:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,10,7,12 +20 10070939 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:40:0:40:0,0,113 +20 10070940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:40:99:40:0,120,1240 +20 10070941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:41:94:41:0,94,1235 +20 10070942 . T . . END=10070958 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:44:99:40:0,108,1250 +20 10070959 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:44:96:44:0,96,1303 +20 10070960 . G . . END=10070969 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:41:99:38:0,102,1530 +20 10070970 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:38:98:38:0,98,1109 +20 10070971 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:39:99:39:0,105,1575 +20 10070972 . A . . END=10070977 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:38:96:36:0,96,1440 +20 10070978 . C . . END=10070982 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070983 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:89:35:0,89,1055 +20 10070984 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:33:74:33:0,74,962 +20 10070985 . G . . END=10070989 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:93:33:0,93,1395 +20 10070990 . G . . END=10070992 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:99:34:0,99,1485 +20 10070993 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:96:36:0,96,1440 +20 10070994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:37:99:37:0,99,1485 +20 10070995 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:81:36:0,81,1078 +20 10070996 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:60:35:0,60,991 +20 10070997 . A . . END=10070998 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070999 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:84:34:0,84,1014 +20 10071000 . T . . END=10071003 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:90:34:0,90,1028 +20 10071004 . T . . END=10071009 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:99:35:0,99,1485 +20 10071010 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:82:35:0,82,1048 +20 10071011 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071012 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:32:96:32:0,96,1031 +20 10071013 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:96:34:0,96,1440 +20 10071015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071016 . A . . END=10071019 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:93:34:0,93,1395 +20 10071020 . G . . END=10071134 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:47:99:35:0,102,1106 +20 10071135 . C T, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=456123,129;ReadPosRankSum=2.25 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 ./.:1,48,0:49:99:1481,137,0,1483,144,1490:0,1,21,27 +20 10071136 . T . . END=10071186 GT:DP:GQ:MIN_DP:PL ./.:83:99:77:0,120,1800 ./.:51:99:45:0,115,1316 +20 10071187 . G A, . . BaseQRankSum=2.97;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=458041,128;ReadPosRankSum=-2.080e-01 GT:AD:DP:GQ:PL:SB ./.:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 ./.:21,24,0:45:99:619,0,444,681,516,1197:13,8,10,14 +20 10071188 . G . . END=10071301 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:43:99:39:0,105,1229 +20 10071302 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:94:42:0,94,1193 +20 10071303 . T . . END=10071337 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:41:99:38:0,105,1151 +20 10071338 . G . . END=10071340 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:38:96:38:0,96,1440 +20 10071341 . C . . END=10071380 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:40:99:37:0,99,1189 +20 10071381 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:95:42:0,95,1187 +20 10071382 . T . . END=10071705 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:47:99:40:0,104,1209 +20 10071706 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:45:96:45:0,96,1325 +20 10071707 . A . . END=10071780 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:49:99:45:0,120,1800 +20 10071781 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:45:86:45:0,86,1292 +20 10071782 . C . . END=10071863 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:43:99:39:0,99,1153 +20 10071864 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:36:74:36:0,74,1010 +20 10071865 . C . . END=10071883 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:39:99:38:0,100,1158 +20 10071884 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:41:96:41:0,96,1187 +20 10071885 . C . . END=10071889 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:99:40:0,102,1207 +20 10071890 . T C, . . BaseQRankSum=-4.435e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=357769,100;ReadPosRankSum=0.584 GT:AD:DP:GQ:PL:SB ./.:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 ./.:20,23,0:43:99:488,0,521,548,590,1138:10,10,9,14 +20 10071891 . G . . END=10072038 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:44:99:39:0,101,1226 +20 10072039 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:93:41:0,93,1189 +20 10072040 . A . . END=10072092 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:99:37:0,101,1113 +20 10072093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:40:98:40:0,98,1264 +20 10072094 . G . . END=10072488 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:52:99:38:0,99,1218 +20 10072489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:93:41:0,93,1120 +20 10072490 . C . . END=10072499 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:43:99:42:0,101,1149 +20 10072500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:86:41:0,86,1135 +20 10072501 . A . . END=10072504 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:43:99:41:0,120,1800 +20 10072505 . A G, . . BaseQRankSum=-1.080e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=374400,104;ReadPosRankSum=0.816 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 ./.:19,20,0:39:99:483,0,448,539,508,1047:8,11,10,10 +20 10072506 . C . . END=10072589 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:44:99:40:0,104,1218 +20 10072590 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:91:41:0,91,1228 +20 10072591 . T . . END=10072628 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:37:0,99,1255 +20 10072629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:38:0,96,1440 +20 10072630 . C . . END=10072631 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,99,1485 +20 10072632 . T . . END=10072634 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:96:36:0,96,1440 +20 10072635 . G . . END=10072642 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1004 +20 10072644 . C . . END=10072654 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072655 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:97:36:0,97,1078 +20 10072656 . C . . END=10072664 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:36:0,105,1575 +20 10072665 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:93:40:0,93,1226 +20 10072666 . A . . END=10072682 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,105,1249 +20 10072683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:96:39:0,96,1225 +20 10072684 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,108,1620 +20 10072685 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:91:37:0,91,1115 +20 10072686 . G . . END=10072688 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,105,1575 +20 10072689 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:38:0,96,1146 +20 10072690 . T . . END=10072710 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1031 +20 10072711 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:92:35:0,92,1023 +20 10072712 . A . . END=10072729 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,102,1089 +20 10072730 . G . . END=10072731 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:93:36:0,93,1066 +20 10072732 . T . . END=10072734 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:36:0,99,1485 +20 10072735 . G . . END=10072738 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1395 +20 10072739 . C . . END=10072745 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:36:0,99,1485 +20 10072746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:84:39:0,84,1083 +20 10072747 . A . . END=10072750 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,111,1107 +20 10072751 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1100 +20 10072752 . T . . END=10072774 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,100,1070 +20 10072775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:84:41:0,84,1074 +20 10072776 . C . . END=10072804 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:36:0,100,1067 +20 10072805 . A . . END=10072809 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:35:0,96,1440 +20 10072810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10072811 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10072812 . A . . END=10072830 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:34:0,99,1101 +20 10072831 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:94:37:0,94,1146 +20 10072832 . G . . END=10072838 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,105,1575 +20 10072839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:89:37:0,89,1143 +20 10072840 . C . . END=10072871 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:36:0,102,1158 +20 10072872 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:98:38:0,98,1118 +20 10072873 . T . . END=10072883 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:39:0,99,1222 +20 10072884 . A . . END=10072890 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:36:0,96,1440 +20 10072891 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1038 +20 10072892 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10072893 . C . . END=10072897 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1054 +20 10072898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:80:36:0,80,1046 +20 10072899 . A . . END=10072909 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:35:0,99,1126 +20 10072910 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:71:35:0,71,1006 +20 10072911 . G . . END=10072913 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10072914 . G . . END=10072915 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:94:35:0,94,997 +20 10072916 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10072917 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10072918 . T . . END=10072929 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:36:0,99,1119 +20 10072930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:78:36:0,78,1062 +20 10072931 . C . . END=10072932 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,99,1485 +20 10072933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:88:34:0,88,999 +20 10072934 . C . . END=10072935 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:32:0,96,904 +20 10072936 . G . . END=10072937 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1002 +20 10072938 . C . . END=10072946 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,99,1095 +20 10072947 . G . . END=10072951 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10072952 . T . . END=10072964 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072965 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:98:38:0,98,1131 +20 10072966 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,105,1575 +20 10072967 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:95:37:0,95,1119 +20 10072968 . C . . END=10072990 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:36:0,99,1142 +20 10072991 . A . . END=10072996 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:96:38:0,96,1440 +20 10072997 . G . . END=10073091 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:34:0,99,1059 +20 10073092 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1073 +20 10073093 . T . . END=10073096 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:39:0,106,1190 +20 10073097 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:87:40:0,87,1147 +20 10073098 . C . . END=10073129 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:47:99:41:0,114,1244 +20 10073130 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:45:95:45:0,95,1349 +20 10073131 . G . . END=10073157 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:45:99:41:0,102,1292 +20 10073158 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:94:42:0,94,1302 +20 10073159 . A . . END=10073175 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:40:0,111,1665 +20 10073176 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:97:43:0,97,1349 +20 10073177 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:43:0,102,1375 +20 10073178 . A . . END=10073180 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:92:42:0,92,1280 +20 10073181 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:43:0,101,1309 +20 10073182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:82:42:0,82,1239 +20 10073183 . T . . END=10073263 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:46:99:39:0,100,1247 +20 10073264 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:94:39:0,94,1135 +20 10073265 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:39:0,108,1620 +20 10073266 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:92:37:0,92,1070 +20 10073267 . G . . END=10073276 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:36:0,104,1165 +20 10073277 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:88:39:0,88,1177 +20 10073278 . A . . END=10073279 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:94:39:0,94,1122 +20 10073280 . T . . END=10073337 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:37:0,99,1166 +20 10073338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:85:37:0,85,1156 +20 10073339 . T . . END=10073344 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:34:0,90,1116 +20 10073345 . A . . END=10073348 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1007 +20 10073349 . G . . END=10073350 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:33:0,90,1073 +20 10073351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:74:34:0,74,1017 +20 10073352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1082 +20 10073353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:88:35:0,88,1083 +20 10073354 . A . . END=10073360 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:33:0,99,1055 +20 10073361 . T . . END=10073364 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:32:0,96,1019 +20 10073365 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:84:34:0,84,1023 +20 10073366 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,943 +20 10073367 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:98:33:0,98,931 +20 10073368 . A . . END=10073369 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1070 +20 10073370 . G . . END=10073371 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10073372 . C . . END=10073377 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,102,1089 +20 10073378 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:95:36:0,95,1044 +20 10073379 . T . . END=10073390 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:35:0,102,1140 +20 10073391 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1126 +20 10073392 . G . . END=10073420 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:38:0,99,1149 +20 10073421 . A . . END=10073425 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:90:39:0,90,1350 +20 10073426 . T . . END=10073434 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:84:34:0,84,1260 +20 10073435 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:78:31:0,78,937 +20 10073436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:84:31:0,84,1260 +20 10073437 . T . . END=10073443 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:31:0,90,1350 +20 10073444 . G . . END=10073448 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10073449 . G . . END=10073450 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10073451 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:83:33:0,83,1017 +20 10073452 . G . . END=10073462 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1080 +20 10073463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1071 +20 10073464 . T . . END=10073472 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:36:0,108,1097 +20 10073473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:71:39:0,71,1136 +20 10073474 . A . . END=10073489 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:34:0,102,1087 +20 10073490 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:90:39:0,90,1177 +20 10073491 . C . . END=10073494 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:37:0,99,1485 +20 10073495 . A . . END=10073498 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:92:36:0,92,1129 +20 10073499 . G . . END=10073500 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,99,1485 +20 10073501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:96:37:0,96,1098 +20 10073502 . A . . END=10073510 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:33:0,99,1017 +20 10073511 . G . . END=10073512 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:35:0,96,1440 +20 10073513 . T . . END=10073551 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:33:0,99,1013 +20 10073552 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:93:31:0,93,978 +20 10073553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,936 +20 10073554 . G . . END=10073560 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:93:31:0,93,963 +20 10073561 . C . . END=10073564 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:33:0,99,1029 +20 10073565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:83:33:0,83,1000 +20 10073566 . T . . END=10073567 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10073568 . A . . END=10073569 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10073570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:93:31:0,93,969 +20 10073571 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1003 +20 10073572 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:76:35:0,76,947 +20 10073573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10073574 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1007 +20 10073575 . C . . END=10073584 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1069 +20 10073585 . A . . END=10073600 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:93:32:0,93,986 +20 10073601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:86:34:0,86,1027 +20 10073602 . A . . END=10073610 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:31:0,90,965 +20 10073611 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:86:35:0,86,992 +20 10073612 . C . . END=10073614 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:34:0,93,1034 +20 10073615 . C . . END=10073699 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:35:0,105,1029 +20 10073700 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:83:38:0,83,1053 +20 10073701 . A . . END=10073722 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:39:0,106,1219 +20 10073723 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:96:41:0,96,1160 +20 10073724 . G . . END=10073758 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:38:0,99,1160 +20 10073759 . T . . END=10073768 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:93:34:0,93,1395 +20 10073769 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:87:33:0,87,1023 +20 10073770 . C . . END=10073771 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:33:0,90,1350 +20 10073772 . A . . END=10073775 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:32:84:31:0,84,1260 +20 10073776 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:33:0,90,1350 +20 10073777 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:81:33:0,81,970 +20 10073778 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:34:0,90,1350 +20 10073779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:87:33:0,87,1305 +20 10073780 . A . . END=10073787 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:32:0,90,1350 +20 10073788 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:85:35:0,85,1030 +20 10073789 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10073790 . T . . END=10073807 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:35:0,99,1150 +20 10073808 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:85:41:0,85,1124 +20 10073809 . C . . END=10073818 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:41:0,114,1295 +20 10073819 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:89:41:0,89,1213 +20 10073820 . T . . END=10073822 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,114,1710 +20 10073823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:87:40:0,87,1216 +20 10073824 . T . . END=10073829 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:39:0,108,1154 +20 10073830 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:91:41:0,91,1215 +20 10073831 . T . . END=10073836 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:40:0,112,1269 +20 10073837 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:95:37:0,95,1115 +20 10073838 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,117,1755 +20 10073839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:92:40:0,92,1218 +20 10073840 . T . . END=10073847 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:40:0,108,1620 +20 10073848 . G . . END=10073849 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:93:40:0,93,1150 +20 10073850 . T . . END=10073854 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,108,1123 +20 10073855 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:95:39:0,95,1159 +20 10073856 . G . . END=10073868 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,100,1132 +20 10073869 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:95:38:0,95,1137 +20 10073870 . C . . END=10073890 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,103,1209 +20 10073891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:93:39:0,93,1204 +20 10073892 . T . . END=10073897 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,102,1530 +20 10073898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:77:36:0,77,1037 +20 10073899 . T . . END=10073900 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:94:37:0,94,1132 +20 10073901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:86:35:0,86,1036 +20 10073902 . G . . END=10073906 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10073907 . C . . END=10073908 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,99,1485 +20 10073909 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:94:35:0,94,1085 +20 10073910 . T . . END=10073928 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:37:0,102,1121 +20 10073929 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:77:37:0,77,1094 +20 10073930 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,99,1485 +20 10073931 . C . . END=10073932 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:35:0,90,1350 +20 10073933 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1305 +20 10073934 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:36:0,90,1350 +20 10073935 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:85:35:0,85,1075 +20 10073936 . A . . END=10073943 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:90:35:0,90,1042 +20 10073944 . C . . END=10073945 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,102,1530 +20 10073946 . G . . END=10073954 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:93:35:0,93,1037 +20 10073955 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,99,1485 +20 10073956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:86:38:0,86,1142 +20 10073957 . C . . END=10073967 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:33:0,99,1029 +20 10073968 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:36:0,96,1051 +20 10073969 . C . . END=10073976 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10073977 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:91:35:0,91,945 +20 10073978 . G . . END=10073982 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10073983 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:92:36:0,92,1043 +20 10073984 . G . . END=10074121 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:36:0,100,1126 +20 10074122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:89:40:0,89,1154 +20 10074123 . G . . END=10074125 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,117,1755 +20 10074126 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:95:40:0,95,1091 +20 10074127 . A . . END=10074129 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,102,1229 +20 10074130 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:94:40:0,94,1163 +20 10074131 . C . . END=10074186 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:37:0,108,1121 +20 10074187 . A G, . . BaseQRankSum=-6.360e-01;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=434523,123;ReadPosRankSum=2.42 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 ./.:17,26,0:43:99:694,0,403,745,481,1226:10,7,16,10 +20 10074188 . T . . END=10074239 GT:DP:GQ:MIN_DP:PL ./.:80:99:71:0,120,1800 ./.:49:99:44:0,113,1271 +20 10074240 . T C, . . BaseQRankSum=-3.298e+00;ClippingRankSum=0.00;DP=136;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=487369,136;ReadPosRankSum=-1.192e+00 GT:AD:DP:GQ:PL:SB ./.:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 ./.:24,25,0:49:99:593,0,646,665,721,1386:13,11,14,11 +20 10074241 . A . . END=10074667 GT:DP:GQ:MIN_DP:PL ./.:74:99:41:0,105,1544 ./.:51:99:39:0,102,1161 +20 10074668 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:96:41:0,96,1440 ./.:37:81:37:0,81,1071 +20 10074669 . A . . END=10074671 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:38:96:36:0,96,1440 +20 10074672 . G . . END=10074674 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:38:99:37:0,99,1485 +20 10074675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:37:90:36:0,90,1350 +20 10074676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:37:90:36:0,90,1350 +20 10074677 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:37:85:37:0,85,1085 +20 10074678 . C . . END=10074695 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:90:33:0,90,1350 +20 10074696 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:35:0,99,1485 +20 10074697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:90:35:0,90,1035 +20 10074698 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:35:0,102,1530 +20 10074699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:94:35:0,94,1061 +20 10074700 . A . . END=10074703 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:34:0,102,1040 +20 10074704 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:93:35:0,93,1038 +20 10074705 . A . . END=10074715 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:36:99:34:0,102,952 +20 10074716 . G A, . . DP=98;ExcessHet=3.01;RAW_MQandDP=350041,98 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 ./.:0,33,0:33:99:1008,99,0,1008,99,1008:0,0,11,22 +20 10074717 . C . . END=10074718 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:35:0,99,1485 +20 10074719 . C . . END=10074720 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:96:35:0,96,1440 +20 10074721 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:36:0,99,1485 +20 10074722 . G . . END=10074723 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:37:93:37:0,93,1395 +20 10074724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:39:99:39:0,99,1485 +20 10074725 . A . . END=10074728 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:40:96:38:0,96,1440 +20 10074729 . G . . END=10074740 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:38:99:37:0,99,1485 +20 10074741 . C . . END=10074755 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:90:32:0,90,1350 +20 10074756 . G . . END=10074763 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1048 +20 10074764 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:32:96:32:0,96,1048 +20 10074765 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1060 +20 10074766 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:96:33:0,96,1440 +20 10074767 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10074768 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074769 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:89:34:0,89,1073 +20 10074770 . A . . END=10074771 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074772 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:99:35:0,99,1485 +20 10074773 . C . . END=10074774 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:96:34:0,96,1440 +20 10074775 . G . . END=10074776 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:36:0,99,1485 +20 10074777 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:78:35:0,78,1051 +20 10074778 . C . . END=10074792 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:93:32:0,93,1015 +20 10074793 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1012 +20 10074794 . C . . END=10074796 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074797 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:76:35:0,76,1017 +20 10074798 . A . . END=10074805 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:37:99:36:0,105,1103 +20 10074806 . G A, . . BaseQRankSum=2.32;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=383277,108;ReadPosRankSum=-1.000e-01 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 ./.:14,23,0:37:99:613,0,307,655,375,1031:8,6,8,15 +20 10074807 . C . . END=10075042 GT:DP:GQ:MIN_DP:PL ./.:68:99:56:0,120,1800 ./.:42:99:35:0,100,1070 +20 10075043 . T C, . . DP=101;ExcessHet=3.01;RAW_MQandDP=360841,101 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 ./.:0,39,0:39:99:1177,116,0,1177,116,1177:0,0,25,14 +20 10075044 . C . . END=10075141 GT:DP:GQ:MIN_DP:PL ./.:55:99:51:0,120,1800 ./.:42:99:37:0,99,1187 +20 10075142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:91:65:0,91,2199 ./.:42:99:37:0,99,1187 +20 10075143 . A . . END=10075145 GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:42:99:37:0,99,1187 +20 10075146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:38:98:38:0,98,1143 +20 10075147 . C . . END=10075167 GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:39:99:36:0,102,1530 +20 10075168 . C T, . . DP=121;ExcessHet=3.01;RAW_MQandDP=428781,121 GT:AD:DP:GQ:PL:SB ./.:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 ./.:0,33,0:33:99:1031,99,0,1031,99,1031:0,0,18,15 +20 10075169 . G . . END=10075173 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:99:36:0,99,1124 +20 10075174 . A . . END=10075182 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:92:35:0,92,1048 +20 10075183 . C . . END=10075188 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:99:35:0,99,1119 +20 10075189 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:98:37:0,98,1107 +20 10075190 . A . . END=10075202 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:99:36:0,100,1083 +20 10075203 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:38:91:38:0,91,1134 +20 10075204 . C . . END=10075205 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:99:40:0,111,1665 +20 10075206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:97:40:0,97,1236 +20 10075207 . A . . END=10075209 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:99:40:0,114,1710 +20 10075210 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:89:40:0,89,1211 +20 10075211 . C . . END=10075462 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:48:99:37:0,101,1025 +20 10075463 . G A, . . BaseQRankSum=0.247;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=-2.174e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:49:0,119,1800,119,1800,1800 ./.:19,23,0:42:99:.:536,0,436,593,503,1096:10,9,8,15 +20 10075464 . G . . END=10075471 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:45:99:43:0,99,1485 +20 10075472 . C . . END=10075476 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:45:93:43:0,93,1395 +20 10075477 . A . . END=10075478 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:44:84:42:0,84,1260 +20 10075479 . A G, . . DP=88;ExcessHet=3.01;RAW_MQandDP=140400,39 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:49:0,119,1800,119,1800,1800 ./.:0,39,0:39:99:.:1465,120,0,1465,120,1465:0,0,17,22 +20 10075480 . T . . END=10075484 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:45:81:44:0,81,1215 +20 10075485 . T . . END=10075489 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:43:72:39:0,72,1080 +20 10075490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:66:40:0,66,990 +20 10075491 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:39:57:39:0,57,855 +20 10075492 . T . . END=10075496 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:40:54:38:0,54,810 +20 10075497 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:39:51:39:0,51,765 +20 10075498 . T . . END=10075499 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:39:48:39:0,48,720 +20 10075500 . A . . END=10075501 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:37:42:37:0,42,630 +20 10075502 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:34:48:34:0,48,720 +20 10075503 . A . . END=10075506 GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:45:35:0,45,675 +20 10075507 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:49:0,119,1800 ./.:36:39:36:0,39,585 +20 10075508 . GAA GA,G, . . BaseQRankSum=-1.270e-01;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=388921,105;ReadPosRankSum=2.47 GT:AD:DP:GQ:PL:SB ./.:0,70,0,0:70:99:1966,210,0,1966,210,1966,1966,210,1966,1966:0,0,29,41 ./.:12,0,11,0:23:99:357,393,798,0,405,371,393,798,405,798:5,7,5,6 +20 10075509 . A *, . . DP=105 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 ./.:12,11,0:23:99:357,0,371,393,405,798:5,7,5,6 +20 10075510 . A *, . . DP=83 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:12,11,0:23:99:.:357,0,371,393,405,798:5,7,5,6 +20 10075511 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:0:34:0,0,66 +20 10075512 . A . . END=10075513 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10075514 . A . . END=10075516 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10075517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:80:35:0,80,1019 +20 10075518 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10075519 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:87:35:0,87,998 +20 10075520 . C . . END=10075522 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:35:0,102,1530 +20 10075523 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:85:35:0,85,1030 +20 10075524 . A . . END=10075526 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10075527 . T . . END=10075530 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:90:33:0,90,1038 +20 10075531 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:87:34:0,87,1017 +20 10075532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:64:35:0,64,980 +20 10075533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:35:0,90,1062 +20 10075534 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:32:70:32:0,70,951 +20 10075535 . T . . END=10075536 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:34:0,90,1079 +20 10075537 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10075538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:85:34:0,85,1007 +20 10075539 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:99:35:0,102,1530 +20 10075540 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:82:35:0,82,1089 +20 10075541 . A . . END=10075545 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:99:34:0,102,1107 +20 10075546 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:74:35:0,74,1110 +20 10075547 . G . . END=10075555 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:36:0,108,1132 +20 10075556 . T . . END=10075557 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:96:39:0,96,1440 +20 10075558 . T . . END=10075575 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:99:36:0,99,1097 +20 10075576 . A . . END=10075580 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:92:36:0,92,980 +20 10075581 . T . . END=10075582 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:38:0,99,1485 +20 10075583 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:95:41:0,95,1244 +20 10075584 . C . . END=10075587 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:99:38:0,111,1665 +20 10075588 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:86:39:0,86,1177 +20 10075589 . T . . END=10075593 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:99:36:0,99,1088 +20 10075594 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:96:36:0,96,995 +20 10075595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,105,1575 +20 10075596 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:97:36:0,97,1103 +20 10075597 . G . . END=10075603 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:34:0,102,1059 +20 10075604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:85:37:0,85,1068 +20 10075605 . A . . END=10075624 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:35:0,105,1025 +20 10075625 . T . . END=10075628 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:43:90:42:0,90,1350 +20 10075629 . A . . END=10075632 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:81:39:0,81,1215 +20 10075633 . C . . END=10075636 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:72:40:0,72,1080 +20 10075637 . A . . END=10075646 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:60:39:0,60,900 +20 10075647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:57:40:0,57,855 +20 10075648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:54:39:0,54,810 +20 10075649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:51:40:0,51,765 +20 10075650 . A . . END=10075652 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:48:38:0,48,720 +20 10075653 . T . . END=10075654 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:42:38:0,42,630 +20 10075655 . G . . END=10075658 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:39:37:0,39,585 +20 10075659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:36:38:0,36,540 +20 10075660 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:27:39:0,27,405 +20 10075661 . T . . END=10075662 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:24:38:0,24,360 +20 10075663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:21:37:0,21,315 +20 10075664 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:18:38:0,18,270 +20 10075665 . T . . END=10075666 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:9:37:0,9,135 +20 10075667 . A . . END=10075668 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:3:37:0,3,45 +20 10075669 . GA G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=116500,32 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:0,29,0:29:87:.:817,87,0,817,87,817:0,0,15,14 +20 10075670 . A *, . . DP=87 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:0,29,0:29:87:.:817,87,0,817,87,817:0,0,15,14 +20 10075671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:0:34:0,0,0 +20 10075672 . A . . END=10075675 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:35:0,90,1041 +20 10075676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:88:36:0,88,1084 +20 10075677 . A . . END=10075678 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:93:36:0,93,1088 +20 10075679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:68:36:0,68,1003 +20 10075680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:84:36:0,84,1260 +20 10075681 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:58:35:0,58,941 +20 10075682 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:68:35:0,68,952 +20 10075683 . C . . END=10075689 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:80:32:0,80,940 +20 10075690 . A . . END=10075693 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:33:93:32:0,93,1395 +20 10075694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10075695 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:66:31:0,66,898 +20 10075696 . C . . END=10075700 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:31:0,81,1215 +20 10075701 . T . . END=10075703 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:71:31:0,71,933 +20 10075704 . C . . END=10075708 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:28:0,81,851 +20 10075709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:28:71:28:0,71,842 +20 10075710 . A . . END=10075712 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10075713 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:28:55:28:0,55,814 +20 10075714 . T . . END=10075719 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10075720 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:33:76:33:0,76,939 +20 10075721 . T . . END=10075726 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:34:0,90,1099 +20 10075727 . C . . END=10075766 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:99:35:0,99,1085 +20 10075767 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:98:40:0,98,1241 +20 10075768 . T . . END=10075781 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:99:37:0,111,1195 +20 10075782 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:91:40:0,91,1193 +20 10075783 . C . . END=10075926 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:52:99:39:0,101,1196 +20 10075927 . T C, . . BaseQRankSum=-1.298e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=180000,50;ReadPosRankSum=-1.755e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:27,23,0:50:99:.:579,0,718,660,787,1448:16,11,12,11 +20 10075928 . A . . END=10076188 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:54:99:46:0,108,1340 +20 10076189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:95:46:0,95,1312 +20 10076190 . G . . END=10076195 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:99:44:0,106,1307 +20 10076196 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:45:93:45:0,93,1301 +20 10076197 . A . . END=10076249 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:99:41:0,104,1086 +20 10076250 . A G, . . BaseQRankSum=-3.386e+00;DP=123;ExcessHet=3.01;MQRankSum=-1.423e+00;RAW_MQandDP=437066,123;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL:SB ./.:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 ./.:0,43,0:43:99:1227,129,0,1227,129,1227:0,0,25,18 +20 10076251 . A . . END=10076275 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:47:99:42:0,111,1665 +20 10076276 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:94:41:0,94,1144 +20 10076277 . A . . END=10076287 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:99:39:0,104,1189 +20 10076288 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:91:41:0,91,1213 +20 10076289 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:84:41:0,84,1115 +20 10076290 . C . . END=10076292 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:43:99:41:0,106,1300 +20 10076293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:91:41:0,91,1126 +20 10076294 . C . . END=10076301 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:43:99:41:0,107,1181 +20 10076302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:45:73:45:0,73,1206 +20 10076303 . A . . END=10076338 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:49:99:45:0,99,1185 +20 10076339 . A G, . . BaseQRankSum=-6.900e-02;DP=127;ExcessHet=3.01;MQRankSum=-8.660e-01;RAW_MQandDP=454441,127;ReadPosRankSum=1.01 GT:AD:DP:GQ:PL:SB ./.:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 ./.:0,55,0:55:99:1597,164,0,1597,164,1597:0,0,18,37 +20 10076340 . A . . END=10076398 GT:DP:GQ:MIN_DP:PL ./.:88:99:71:0,120,1800 ./.:57:99:47:0,110,1369 +20 10076399 . G A, . . BaseQRankSum=4.15;DP=139;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=500400,139;ReadPosRankSum=-1.058e+00 GT:AD:DP:GQ:PL:SB ./.:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 ./.:0,45,0:45:99:1353,133,0,1353,133,1353:0,0,16,29 +20 10076400 . G . . END=10076410 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:45:99:41:0,115,1400 +20 10076411 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:97:42:0,97,1198 +20 10076412 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:39:0,117,1174 +20 10076413 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:90:41:0,90,1153 +20 10076414 . G . . END=10076418 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:39:0,104,1121 +20 10076419 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:94:41:0,94,1224 +20 10076420 . G . . END=10076444 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:99:39:0,99,1220 +20 10076445 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:90:40:0,90,1216 +20 10076446 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:87:40:0,87,1106 +20 10076447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:40:0,108,1620 +20 10076448 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:92:41:0,92,1226 +20 10076449 . A . . END=10076451 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:37:0,101,1053 +20 10076452 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:76:35:0,76,947 +20 10076453 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:88:38:0,88,1063 +20 10076454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:91:38:0,91,1093 +20 10076455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,105,1575 +20 10076456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:96:38:0,96,1440 +20 10076457 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:80:38:0,80,1031 +20 10076458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:96:37:0,96,1440 +20 10076459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:85:38:0,85,1031 +20 10076460 . A . . END=10076461 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:93:38:0,93,1395 +20 10076462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:38:0,99,1485 +20 10076463 . A . . END=10076467 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:90:35:0,90,964 +20 10076468 . T . . END=10076469 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:68:33:0,68,882 +20 10076470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:33:79:33:0,79,972 +20 10076471 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:81:32:0,81,1215 +20 10076472 . C . . END=10076479 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:71:29:0,71,844 +20 10076480 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:69:29:0,69,1035 +20 10076481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:56:27:0,56,819 +20 10076482 . T . . END=10076483 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:69:29:0,69,815 +20 10076484 . C . . END=10076488 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:70:26:0,70,821 +20 10076489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:52:27:0,52,712 +20 10076490 . A . . END=10076492 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:75:28:0,75,848 +20 10076493 . G . . END=10076494 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:63:27:0,63,707 +20 10076495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:26:78:26:0,78,771 +20 10076496 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:48:27:0,48,732 +20 10076497 . A . . END=10076504 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:64:26:0,64,769 +20 10076505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:28:72:28:0,72,1080 +20 10076506 . A . . END=10076507 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:26:69:25:0,69,1035 +20 10076508 . G . . END=10076509 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:25:72:25:0,72,1080 +20 10076510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:25:64:25:0,64,678 +20 10076511 . A . . END=10076512 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:78:26:0,78,766 +20 10076513 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:27:81:27:0,81,775 +20 10076514 . T . . END=10076521 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:28:75:27:0,75,1125 +20 10076522 . T . . END=10076527 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:81:28:0,81,836 +20 10076528 . T . . END=10076536 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:90:30:0,90,897 +20 10076537 . A . . END=10076538 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:99:34:0,99,1485 +20 10076539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:96:34:0,96,1440 +20 10076540 . A . . END=10076544 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:99:34:0,99,1034 +20 10076545 . A . . END=10076546 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:76:36:0,76,1000 +20 10076547 . A . . END=10076557 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:99:36:0,99,1089 +20 10076558 . T . . END=10076569 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:90:34:0,90,1350 +20 10076570 . G . . END=10076575 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:87:32:0,87,1305 +20 10076576 . A . . END=10076579 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:90:31:0,90,1350 +20 10076580 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:78:32:0,78,918 +20 10076581 . G . . END=10076599 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:33:90:31:0,90,949 +20 10076600 . G . . END=10076645 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:34:0,99,1081 +20 10076646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:97:40:0,97,1184 +20 10076647 . T . . END=10076685 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:36:0,99,1151 +20 10076686 . A . . END=10076690 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:96:33:0,96,1440 +20 10076691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:99:35:0,99,1485 +20 10076692 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:91:34:0,91,1022 +20 10076693 . T . . END=10076696 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:99:33:0,99,1052 +20 10076697 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:96:32:0,96,1046 +20 10076698 . A . . END=10076706 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:99:33:0,99,1056 +20 10076707 . A . . END=10076708 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:96:34:0,96,1440 +20 10076709 . T . . END=10076748 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:99:35:0,99,1142 +20 10076749 . G A, . . DP=90;ExcessHet=3.01;RAW_MQandDP=140400,39 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,120,1800,120,1800,1800 ./.:0,38,0:38:99:.:1267,114,0,1267,114,1267:0,0,24,14 +20 10076750 . C . . END=10076760 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:37:0,99,1172 +20 10076761 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:81:36:0,81,1066 +20 10076762 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:93:36:0,93,1087 +20 10076763 . G . . END=10076790 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:99:35:0,100,1069 +20 10076791 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:97:38:0,97,1136 +20 10076792 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:39:0,108,1620 +20 10076793 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:83:39:0,83,1122 +20 10076794 . A . . END=10076795 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:38:0,105,1575 +20 10076796 . A G, . . DP=88;ExcessHet=3.01;RAW_MQandDP=133200,37 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,120,1800,120,1800,1800 ./.:0,37,0:37:99:.:1164,111,0,1164,111,1164:0,0,21,16 +20 10076797 . A . . END=10076799 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:39:0,105,1575 +20 10076800 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:40:89:40:0,89,1207 +20 10076801 . G . . END=10076817 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:37:0,102,1238 +20 10076818 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:78:37:0,78,1108 +20 10076819 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,108,1158 +20 10076820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:91:36:0,91,1108 +20 10076821 . C . . END=10076859 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:44:99:37:0,108,1171 +20 10076860 . A C, . . DP=94;ExcessHet=3.01;RAW_MQandDP=154800,43 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,120,1800,120,1800,1800 ./.:0,43,0:43:99:.:1227,129,0,1227,129,1227:0,0,19,24 +20 10076861 . G . . END=10076893 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:99:40:0,107,1241 +20 10076894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:42:97:42:0,97,1220 +20 10076895 . T . . END=10076899 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:41:99:40:0,106,1236 +20 10076900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:85:39:0,85,1189 +20 10076901 . G . . END=10076903 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:38:0,108,1620 +20 10076904 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:97:38:0,97,1141 +20 10076905 . T . . END=10076908 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:38:0,105,1575 +20 10076909 . G . . END=10076912 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:93:38:0,93,1395 +20 10076913 . T . . END=10076918 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:99:37:0,99,1485 +20 10076919 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:82:39:0,82,1180 +20 10076920 . A . . END=10076922 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,105,1575 +20 10076923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:93:36:0,93,1057 +20 10076924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:99:36:0,102,1530 +20 10076925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:66:37:0,66,1018 +20 10076926 . A . . END=10076931 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:38:99:37:0,99,1485 +20 10076932 . C . . END=10076933 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:93:36:0,93,1070 +20 10076934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:77:36:0,77,1037 +20 10076935 . A . . END=10076936 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:36:90:36:0,90,1350 +20 10076937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:87:35:0,87,1305 +20 10076938 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:79:35:0,79,1050 +20 10076939 . A . . END=10076941 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:81:34:0,81,1215 +20 10076942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:68:34:0,68,997 +20 10076943 . C . . END=10076944 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:84:34:0,84,1260 +20 10076945 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:34:69:34:0,69,999 +20 10076946 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:78:32:0,78,1170 +20 10076947 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:69:32:0,69,1035 +20 10076948 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:31:31:0,31,815 +20 10076949 . C . . END=10076951 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:61:31:0,61,912 +20 10076952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:37:31:0,37,829 +20 10076953 . A . . END=10076959 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:66:28:0,66,793 +20 10076960 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:28:52:28:0,52,776 +20 10076961 . C . . END=10076974 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:60:29:0,60,900 +20 10076975 . A . . END=10076976 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:54:27:0,54,810 +20 10076977 . T . . END=10076978 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:29:51:28:0,51,765 +20 10076979 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:42:30:0,42,779 +20 10076980 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:48:32:0,48,720 +20 10076981 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:31:0:31:0,0,730 +20 10076982 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:30:41:30:0,41,751 +20 10076983 . T . . END=10076984 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:32:0:29:0,0,619 +20 10076985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:37:48:37:0,48,720 +20 10076986 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:0:35:0,0,321 +20 10076987 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:39:54:39:0,54,810 +20 10076988 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,120,1800 ./.:35:0:35:0,0,377 +20 10076989 . CAA C,CA,CAAA,CAAAAAA, . . BaseQRankSum=-1.760e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=-1.670e-01;RAW_MQandDP=346646,102;ReadPosRankSum=0.087 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:7,3,13,7,0,0:30:41:.:.:252,271,1146,41,448,376,147,276,0,361,322,712,423,318,705,322,712,423,318,705,705:4,3,12,11 ./.:1,0,0,0,19,0:20:62:0|1:10076989_C_CAAAA:964,967,975,967,975,975,967,975,975,975,62,69,69,69,0,967,975,975,975,69,975:1,0,12,7 +20 10076990 . A *, . . DP=112 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:7,13,0:30:41:.:252,41,376,322,423,705:4,3,12,11 ./.:.:37:0:37:0,0,382,0,382,382 +20 10076991 . A *, . . DP=111 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:7,13,0:30:41:.:252,41,376,322,423,705:4,3,12,11 ./.:.:37:75:36:0,75,1125,75,1125,1125 +20 10076992 . A . . END=10076995 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:37:75:36:0,75,1125 +20 10076996 . A . . END=10076998 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:36:81:36:0,81,1215 +20 10076999 . A . . END=10077000 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:36:75:36:0,75,1125 +20 10077001 . A . . END=10077007 GT:DP:GQ:MIN_DP:PL ./.:69:99:59:0,120,1800 ./.:38:81:38:0,81,1215 +20 10077008 . T A, . . BaseQRankSum=-1.748e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.725;RAW_MQandDP=270123,79;ReadPosRankSum=0.805 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 ./.:23,3,0:26:7:0|1:10076989_C_CAAAA:0,7,855,69,864,926:11,12,3,0 +20 10077009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:99:52:0,120,1800 ./.:36:78:36:0,78,1170 +20 10077010 . G A, . . BaseQRankSum=-1.841e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.558;RAW_MQandDP=268523,78;ReadPosRankSum=0.911 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 ./.:21,2,0:23:7:0|1:10076989_C_CAAAA:0,7,855,69,864,925:10,11,2,0 +20 10077011 . A . . END=10077012 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:78:33:0,78,1170 +20 10077013 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:81:33:0,81,1215 +20 10077014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:71:32:0,71,971 +20 10077015 . T A, . . BaseQRankSum=-1.628e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=0.442;RAW_MQandDP=86000,25;ReadPosRankSum=1.18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:24,1,0:25:18:.:0|1:10076989_C_CAAAA:0,18,932,72,938,993:13,11,1,0 +20 10077016 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:81:32:0,81,1215 +20 10077017 . G . . END=10077018 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:31:57:31:0,57,863 +20 10077019 . T . . END=10077025 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:81:29:0,81,952 +20 10077026 . A . . END=10077029 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:31:90:30:0,90,991 +20 10077030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:81:32:0,81,972 +20 10077031 . G . . END=10077035 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:96:32:0,96,992 +20 10077036 . A . . END=10077038 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:99:33:0,99,1055 +20 10077039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:88:33:0,88,1026 +20 10077040 . G . . END=10077042 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:96:32:0,96,1007 +20 10077043 . A . . END=10077059 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:99:34:0,99,1485 +20 10077060 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:35:93:35:0,93,1395 +20 10077061 . A . . END=10077071 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:35:82:33:0,82,1011 +20 10077072 . A . . END=10077074 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:90:30:0,90,958 +20 10077075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:87:30:0,87,1305 +20 10077076 . T . . END=10077079 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:90:31:0,90,987 +20 10077080 . A . . END=10077087 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:34:99:34:0,99,1050 +20 10077088 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:34:70:34:0,70,993 +20 10077089 . T . . END=10077099 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:99:34:0,99,1056 +20 10077100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:38:96:38:0,96,1131 +20 10077101 . C . . END=10077105 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:99:36:0,105,1078 +20 10077106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:83:37:0,83,1073 +20 10077107 . C . . END=10077112 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:99:34:0,99,1485 +20 10077113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:94:36:0,94,1106 +20 10077114 . A . . END=10077174 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:38:99:35:0,99,1127 +20 10077175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:97:36:0,97,1144 +20 10077176 . G . . END=10077197 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:39:99:37:0,102,1207 +20 10077198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:97:41:0,97,1270 +20 10077199 . T . . END=10077244 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:36:0,103,1163 +20 10077245 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:91:37:0,91,1092 +20 10077246 . G . . END=10077258 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:36:0,108,1125 +20 10077259 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:93:41:0,93,1151 +20 10077260 . C . . END=10077266 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:99:41:0,111,1665 +20 10077267 . A T, . . DP=85;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:0,39,0:39:99:.:0|1:10077267_A_T:1716,117,0,1716,117,1716:0,0,22,17 +20 10077268 . G . . END=10077274 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:41:0,102,1530 +20 10077275 . A G, . . DP=84;ExcessHet=3.01;RAW_MQandDP=144000,40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:0,38,0:38:99:.:0|1:10077267_A_T:1719,117,0,1719,117,1719:0,0,20,18 +20 10077276 . A . . END=10077279 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:40:99:38:0,102,1530 +20 10077280 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:94:37:0,94,1146 +20 10077281 . A . . END=10077296 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:39:99:36:0,104,1178 +20 10077297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:44:84:44:0,84,1233 +20 10077298 . A . . END=10077306 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:99:40:0,111,1318 +20 10077307 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:93:41:0,93,1201 +20 10077308 . A . . END=10077614 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:48:99:39:0,99,1193 +20 10077615 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:61:42:0,61,1247 +20 10077616 . A . . END=10077620 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:43:92:42:0,92,1088 +20 10077621 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:45:84:45:0,84,1198 +20 10077622 . G . . END=10077751 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:53:99:44:0,99,1170 +20 10077752 . T C, . . BaseQRankSum=-6.503e+00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=284400,79;ReadPosRankSum=-3.520e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:34,45,0:79:99:.:1374,0,1187,1477,1322,2799:16,18,16,29 ./.:.:53:99:44:0,99,1170,99,1170,1170 +20 10077753 . G . . END=10077767 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:53:99:44:0,99,1170 +20 10077768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:47:91:47:0,91,1379 +20 10077769 . G . . END=10077781 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:40:0,99,1211 +20 10077782 . T . . END=10077785 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:90:43:0,90,1350 +20 10077786 . C . . END=10077788 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:84:43:0,84,1260 +20 10077789 . A . . END=10077794 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:72:40:0,72,1080 +20 10077795 . G . . END=10077797 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:60:42:0,60,900 +20 10077798 . A . . END=10077799 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:57:41:0,57,855 +20 10077800 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:54:39:0,54,810 +20 10077801 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:45:40:0,45,675 +20 10077802 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:42:40:0,42,630 +20 10077803 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:39:39:0,39,585 +20 10077804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:33:40:0,33,495 +20 10077805 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:21:38:0,21,315 +20 10077806 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:18:37:0,18,270 +20 10077807 . T . . END=10077814 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:3:37:0,3,45 +20 10077815 . T . . END=10077819 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:0:38:0,0,0 +20 10077820 . TC T, . . DP=81;ExcessHet=3.01;RAW_MQandDP=126000,35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1276,105,0,1276,105,1276:0,0,18,17 +20 10077821 . C *, . . DP=81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1276,105,0,1276,105,1276:0,0,18,17 +20 10077822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:0:39:0,0,0 +20 10077823 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:78:39:0,78,1170 +20 10077824 . T . . END=10077826 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:81:38:0,81,1215 +20 10077827 . T . . END=10077828 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:78:37:0,78,1170 +20 10077829 . T . . END=10077838 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:84:29:0,84,1260 +20 10077839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:76:29:0,76,834 +20 10077840 . G . . END=10077843 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:81:28:0,81,1215 +20 10077844 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:62:29:0,62,827 +20 10077845 . G . . END=10077848 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:84:30:0,84,1260 +20 10077849 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:32:0,90,1350 +20 10077850 . A . . END=10077851 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:78:30:0,78,840 +20 10077852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:53:29:0,53,797 +20 10077853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:32:0,90,1350 +20 10077854 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1305 +20 10077855 . G . . END=10077858 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:31:0,90,1350 +20 10077859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:73:34:0,73,945 +20 10077860 . A . . END=10077862 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:32:0,90,1350 +20 10077863 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1017 +20 10077864 . G . . END=10077865 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:93:32:0,93,1395 +20 10077866 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:70:33:0,70,960 +20 10077867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:96:33:0,96,1440 +20 10077868 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:83:33:0,83,1030 +20 10077869 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:69:33:0,69,923 +20 10077870 . A . . END=10077871 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1485 +20 10077872 . G . . END=10077873 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:83:35:0,83,1006 +20 10077874 . A . . END=10077877 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1485 +20 10077878 . G . . END=10077879 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:91:34:0,91,1073 +20 10077880 . T . . END=10077989 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:99:35:0,102,1120 +20 10077990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:88:38:0,88,1155 +20 10077991 . C . . END=10077997 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1130 +20 10077998 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1026 +20 10077999 . C . . END=10078002 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,101,1183 +20 10078003 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:95:38:0,95,1164 +20 10078004 . T . . END=10078005 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:38:0,105,1575 +20 10078006 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:83:38:0,83,1168 +20 10078007 . T . . END=10078012 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:37:0,102,1530 +20 10078013 . A . . END=10078014 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1089 +20 10078015 . C . . END=10078017 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,99,1485 +20 10078018 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1078 +20 10078019 . C . . END=10078028 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1530 +20 10078029 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1149 +20 10078030 . G . . END=10078033 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,99,1485 +20 10078034 . A . . END=10078038 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:93:37:0,93,1395 +20 10078039 . T . . END=10078040 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:87:35:0,87,1305 +20 10078041 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1350 +20 10078042 . G . . END=10078049 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:81:34:0,81,1215 +20 10078050 . T . . END=10078055 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:31:0,90,1350 +20 10078056 . T . . END=10078057 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:63:32:0,63,940 +20 10078058 . C . . END=10078064 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:31:0,90,1350 +20 10078065 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1485 +20 10078066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:91:34:0,91,963 +20 10078067 . C . . END=10078071 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1059 +20 10078072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:77:35:0,77,1010 +20 10078073 . T . . END=10078084 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:36:0,99,1073 +20 10078085 . G . . END=10078086 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:95:37:0,95,1098 +20 10078087 . T . . END=10078090 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,101,1082 +20 10078091 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:96:38:0,96,1091 +20 10078092 . C . . END=10078107 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:35:0,99,1076 +20 10078108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:96:38:0,96,1121 +20 10078109 . T . . END=10078115 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1530 +20 10078116 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:96:37:0,96,1096 +20 10078117 . A . . END=10078119 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:37:0,102,1530 +20 10078120 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:97:39:0,97,1183 +20 10078121 . T . . END=10078128 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,100,1114 +20 10078129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:97:36:0,97,1097 +20 10078130 . T . . END=10078137 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:36:0,99,1485 +20 10078138 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1116 +20 10078139 . C . . END=10078145 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,104,1130 +20 10078146 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:84:39:0,84,1164 +20 10078147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:40:0,111,1665 +20 10078148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:93:40:0,93,1202 +20 10078149 . T . . END=10078161 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:39:0,108,1218 +20 10078162 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:96:42:0,96,1251 +20 10078163 . T . . END=10078206 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:39:0,103,1236 +20 10078207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:90:40:0,90,1177 +20 10078208 . G . . END=10078314 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:39:0,104,1208 +20 10078315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:86:40:0,86,1128 +20 10078316 . C . . END=10078344 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:38:0,100,1217 +20 10078345 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:71:39:0,71,1101 +20 10078346 . G . . END=10078389 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:39:0,104,1168 +20 10078390 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:91:40:0,91,1266 +20 10078391 . G . . END=10078403 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:39:0,102,1226 +20 10078404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:98:42:0,98,1294 +20 10078405 . T . . END=10078418 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:99:41:0,104,1300 +20 10078419 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:94:43:0,94,1280 +20 10078420 . C . . END=10078451 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,104,1198 +20 10078452 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:77:41:0,77,1201 +20 10078453 . T . . END=10078469 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:36:0,99,1113 +20 10078470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:82:37:0,82,1111 +20 10078471 . T . . END=10078493 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:38:0,101,1134 +20 10078494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:73:39:0,73,1094 +20 10078495 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:40:0,102,1530 +20 10078496 . A . . END=10078504 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:93:37:0,93,1182 +20 10078505 . G A, . . DP=83;ExcessHet=3.01;RAW_MQandDP=133200,37 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1176,105,0,1176,105,1176:0,0,17,18 +20 10078506 . G . . END=10078512 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:33:0,93,1395 +20 10078513 . G . . END=10078514 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:77:33:0,77,1003 +20 10078515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1013 +20 10078516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:93:32:0,93,1395 +20 10078517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:78:32:0,78,943 +20 10078518 . T . . END=10078519 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:93:32:0,93,1012 +20 10078520 . T . . END=10078527 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1142 +20 10078528 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:35:0,93,1395 +20 10078529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:89:35:0,89,1006 +20 10078530 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:75:35:0,75,964 +20 10078531 . A . . END=10078542 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:34:0,90,1049 +20 10078543 . T . . END=10078545 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1485 +20 10078546 . C . . END=10078551 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:33:0,90,1350 +20 10078552 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:82:33:0,82,976 +20 10078553 . C . . END=10078554 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:33:0,90,1350 +20 10078555 . A . . END=10078556 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:87:33:0,87,1305 +20 10078557 . T . . END=10078562 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:32:0,90,960 +20 10078563 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:68:32:0,68,906 +20 10078564 . T . . END=10078565 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,102,1530 +20 10078566 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:92:36:0,92,1068 +20 10078567 . G . . END=10078570 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,103,1134 +20 10078571 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:98:38:0,98,1081 +20 10078572 . T . . END=10078601 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:99:38:0,104,1286 +20 10078602 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:98:48:0,98,1349 +20 10078603 . C . . END=10078615 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:99:42:0,108,1260 +20 10078616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:96:42:0,96,1192 +20 10078617 . A . . END=10078855 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:47:99:41:0,99,1194 +20 10078856 . A . . END=10078857 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:90:43:0,90,1350 +20 10078858 . G . . END=10078859 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:81:43:0,81,1215 +20 10078860 . T . . END=10078863 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:72:44:0,72,1080 +20 10078864 . A . . END=10078869 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:69:44:0,69,1035 +20 10078870 . G . . END=10078871 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:57:42:0,57,855 +20 10078872 . C . . END=10078873 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:54:45:0,54,810 +20 10078874 . T . . END=10078879 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:48:45:0,48,720 +20 10078880 . C . . END=10078882 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:45:41:0,45,675 +20 10078883 . A . . END=10078885 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:42:40:0,42,630 +20 10078886 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:36:43:0,36,540 +20 10078887 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:33:43:0,33,495 +20 10078888 . G . . END=10078889 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:27:42:0,27,405 +20 10078890 . C . . END=10078891 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:18:42:0,18,270 +20 10078892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:15:42:0,15,225 +20 10078893 . A . . END=10078894 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:12:43:0,12,180 +20 10078895 . T . . END=10078896 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:6:45:0,6,90 +20 10078897 . T TA, . . DP=88;ExcessHet=3.01;RAW_MQandDP=151200,42 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,40,0:40:99:.:1219,129,0,1219,129,1219:0,0,19,21 +20 10078898 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:0:48:0,0,0 +20 10078899 . A . . END=10078907 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:99:46:0,111,1322 +20 10078908 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:88:46:0,88,1279 +20 10078909 . A . . END=10079064 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:51:99:43:0,101,1354 +20 10079065 . T C, . . DP=87;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,39,0:39:99:.:1122,116,0,1122,116,1122:0,0,18,21 +20 10079066 . G . . END=10079103 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,101,1171 +20 10079104 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:98:42:0,98,1160 +20 10079105 . A . . END=10079110 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:38:0,102,1150 +20 10079111 . G . . END=10079113 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:92:36:0,92,1028 +20 10079114 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:77:36:0,77,1044 +20 10079115 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:96:37:0,96,1440 +20 10079116 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:89:36:0,89,1040 +20 10079117 . T . . END=10079118 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:90:36:0,90,1350 +20 10079119 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:89:35:0,89,1037 +20 10079120 . T . . END=10079122 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:35:0,90,1350 +20 10079123 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:87:35:0,87,1009 +20 10079124 . T . . END=10079133 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:35:0,90,1350 +20 10079134 . A . . END=10079136 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:84:38:0,84,1260 +20 10079137 . A . . END=10079140 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:90:37:0,90,1350 +20 10079141 . A . . END=10079142 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,102,1530 +20 10079143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:93:36:0,93,1119 +20 10079144 . A . . END=10079145 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:36:0,99,1485 +20 10079146 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:94:35:0,94,1083 +20 10079147 . T . . END=10079151 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,99,1485 +20 10079152 . T . . END=10079154 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:35:0,93,1395 +20 10079155 . T . . END=10079180 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:37:0,99,1159 +20 10079181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:94:41:0,94,1251 +20 10079182 . T . . END=10079187 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,117,1302 +20 10079188 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:96:43:0,96,1161 +20 10079189 . A . . END=10079216 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:42:0,106,1231 +20 10079217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:98:45:0,98,1252 +20 10079218 . T . . END=10079237 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:42:0,113,1352 +20 10079238 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:89:45:0,89,1298 +20 10079239 . A . . END=10079246 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:99:44:0,113,1301 +20 10079247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:97:43:0,97,1246 +20 10079248 . T . . END=10079253 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:41:0,111,1209 +20 10079254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:98:44:0,98,1341 +20 10079255 . A . . END=10079395 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:49:99:42:0,101,1241 +20 10079396 . A G, . . DP=97;ExcessHet=3.01;RAW_MQandDP=183600,51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,50,0:50:99:.:1433,150,0,1433,150,1433:0,0,26,24 +20 10079397 . C . . END=10079451 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:52:99:39:0,105,1172 +20 10079452 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:88:38:0,88,1105 +20 10079453 . A . . END=10079454 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:38:0,99,1485 +20 10079455 . A . . END=10079461 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:90:37:0,90,1350 +20 10079462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:39:0,99,1485 +20 10079463 . T . . END=10079466 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:90:39:0,90,1350 +20 10079467 . A . . END=10079468 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,99,1485 +20 10079469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:93:39:0,93,1395 +20 10079470 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:84:38:0,84,1124 +20 10079471 . G . . END=10079475 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:33:0,90,1350 +20 10079476 . T G, . . BaseQRankSum=-4.570e+00;DP=79;ExcessHet=3.01;MQRankSum=-8.260e-01;RAW_MQandDP=153410,44;ReadPosRankSum=1.53 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,11,0:44:39:.:39,0,1137,137,1166,1304:6,27,11,0 ./.:.:35:85:35:0,85,1012,85,1012,1012 +20 10079477 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:35:93:35:0,93,1395 +20 10079478 . A . . END=10079481 GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:37:99:36:0,99,1485 +20 10079482 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:36:97:36:0,97,1087 +20 10079483 . A . . END=10079488 GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:36:99:35:0,102,1067 +20 10079489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:47:84:47:0,84,1672 ./.:36:99:35:0,102,1067 +20 10079490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,102,1067 +20 10079491 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:94:37:0,94,1102 +20 10079492 . G . . END=10079494 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,105,1575 +20 10079495 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:98:37:0,98,1127 +20 10079496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,99,1485 +20 10079497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1157 +20 10079498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,99,1485 +20 10079499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:63:36:0,63,1020 +20 10079500 . A . . END=10079503 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10079504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1120 +20 10079505 . G . . END=10079508 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,102,1065 +20 10079509 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:98:39:0,98,1057 +20 10079510 . T . . END=10079519 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:39:0,100,1115 +20 10079520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:98:43:0,98,1225 +20 10079521 . T . . END=10079566 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:41:0,110,1253 +20 10079567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:81:44:0,81,1289 +20 10079568 . C . . END=10079575 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:99:43:0,120,1800 +20 10079576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:85:42:0,85,1240 +20 10079577 . G . . END=10079693 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:99:40:0,100,1193 +20 10079694 . T . . END=10079695 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:90:41:0,90,1275 +20 10079696 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:71:41:0,71,1166 +20 10079697 . A . . END=10079699 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:41:0,99,1485 +20 10079700 . A . . END=10079704 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:90:41:0,90,1350 +20 10079705 . A . . END=10079710 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:84:37:0,84,1260 +20 10079711 . T . . END=10079718 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:72:34:0,72,1080 +20 10079719 . T . . END=10079725 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:63:33:0,63,945 +20 10079726 . A . . END=10079729 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:54:35:0,54,810 +20 10079730 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:51:38:0,51,765 +20 10079731 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:42:38:0,42,630 +20 10079732 . T . . END=10079737 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:39:39:0,39,585 +20 10079738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:36:39:0,36,540 +20 10079739 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:33:38:0,33,495 +20 10079740 . T . . END=10079742 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:24:38:0,24,360 +20 10079743 . A . . END=10079744 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:18:38:0,18,270 +20 10079745 . A . . END=10079747 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:15:39:0,15,225 +20 10079748 . T . . END=10079751 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:12:38:0,12,180 +20 10079752 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:9:39:0,9,135 +20 10079753 . A . . END=10079758 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:3:39:0,3,45 +20 10079759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:6:43:0,6,90 +20 10079760 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:9:42:0,9,135 +20 10079761 . T TAA, . . DP=81;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:40:0,105,1571,105,1571,1571 ./.:0,41,0:41:99:.:1864,126,0,1864,126,1864:0,0,22,19 +20 10079762 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:0:43:0,0,0 +20 10079763 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:28:43:0,28,1126 +20 10079764 . G . . END=10079765 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:42:0,114,1710 +20 10079766 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:67:42:0,67,1172 +20 10079767 . A . . END=10079790 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:38:0,103,1194 +20 10079791 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:97:40:0,97,1176 +20 10079792 . T . . END=10079798 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:38:0,105,1575 +20 10079799 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:97:38:0,97,1091 +20 10079800 . T . . END=10079805 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:35:0,102,1530 +20 10079806 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:95:37:0,95,1135 +20 10079807 . A . . END=10079814 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,102,1530 +20 10079815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:95:38:0,95,1032 +20 10079816 . T . . END=10079820 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,101,1220 +20 10079821 . C G, . . DP=76;ExcessHet=3.01;RAW_MQandDP=129600,36 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:40:0,105,1571,105,1571,1571 ./.:0,36,0:36:99:.:1159,108,0,1159,108,1159:0,0,19,17 +20 10079822 . A . . END=10079993 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:39:0,108,1281 +20 10079994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:80:44:0,80,1196 +20 10079995 . A . . END=10080024 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:38:0,101,1133 +20 10080025 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:92:41:0,92,1155 +20 10080026 . A . . END=10080054 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:36:0,105,1069 +20 10080055 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:93:38:0,93,1125 +20 10080056 . G . . END=10080070 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:35:0,99,1083 +20 10080071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:85:35:0,85,1033 +20 10080072 . G . . END=10080078 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10080079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:81:32:0,81,877 +20 10080080 . A . . END=10080083 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10080084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:78:33:0,78,1001 +20 10080085 . A . . END=10080094 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:33:0,99,1009 +20 10080095 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:92:37:0,92,1117 +20 10080096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:87:37:0,87,1122 +20 10080097 . C . . END=10080135 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:35:0,99,1101 +20 10080136 . T . . END=10080137 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:82:40:0,82,1106 +20 10080138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:41:0,120,1800 +20 10080139 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:76:42:0,76,1214 +20 10080140 . C . . END=10080168 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:40:0,101,1206 +20 10080169 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:89:41:0,89,1265 +20 10080170 . T . . END=10080175 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:41:0,112,1279 +20 10080176 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:92:40:0,92,1172 +20 10080177 . T . . END=10080180 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:40:0,119,1224 +20 10080181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:81:42:0,81,1259 +20 10080182 . C . . END=10080282 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:48:99:38:0,101,1253 +20 10080283 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:97:40:0,97,1193 +20 10080284 . T . . END=10080285 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:41:0,114,1710 +20 10080286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:98:41:0,98,1182 +20 10080287 . T . . END=10080291 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:41:0,111,1210 +20 10080292 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:97:42:0,97,1269 +20 10080293 . G . . END=10080549 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:53:99:38:0,105,1180 +20 10080550 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:60:25:60:0,25,1367 +20 10080551 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:62:50:62:0,50,1706 +20 10080552 . A . . END=10080561 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:64:99:61:0,120,1800 +20 10080562 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:59:83:59:0,83,1562 +20 10080563 . A . . END=10080566 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:60:99:53:0,120,1800 +20 10080567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:59:69:59:0,69,1401 +20 10080568 . A . . END=10080601 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:55:99:44:0,101,1258 +20 10080602 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:77:43:0,77,1116 +20 10080603 . T . . END=10080743 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:54:99:46:0,106,1259 +20 10080744 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:53:89:53:0,89,1446 +20 10080745 . A . . END=10080769 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:49:99:43:0,119,1435 +20 10080770 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:48:94:48:0,94,1393 +20 10080771 . A . . END=10080825 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:44:0,117,1447 +20 10080826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:90:50:0,90,1439 +20 10080827 . A . . END=10080857 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:51:99:46:0,109,1317 +20 10080858 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:97:47:0,97,1316 +20 10080859 . T . . END=10080862 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:45:99:45:0,105,1363 +20 10080863 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:45:94:45:0,94,1365 +20 10080864 . T . . END=10080882 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:49:99:46:0,120,1800 +20 10080883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:94:47:0,94,1343 +20 10080884 . A . . END=10081241 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:41:0,102,1294 +20 10081242 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:89:41:0,89,1256 +20 10081243 . A . . END=10081245 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:38:0,102,1530 +20 10081246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:93:41:0,93,1230 +20 10081247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:39:0,108,1620 +20 10081248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:87:40:0,87,1183 +20 10081249 . A . . END=10081255 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,105,1575 +20 10081256 . G . . END=10081261 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:90:36:0,90,1350 +20 10081262 . G . . END=10081264 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:87:38:0,87,1305 +20 10081265 . G . . END=10081270 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:90:34:0,90,1350 +20 10081271 . T . . END=10081283 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:30:81:28:0,81,1215 +20 10081284 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:29:76:29:0,76,884 +20 10081285 . C . . END=10081292 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:30:81:28:0,81,1215 +20 10081293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:90:31:0,90,1350 +20 10081294 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:78:31:0,78,925 +20 10081295 . T . . END=10081296 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10081297 . A . . END=10081299 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1076 +20 10081300 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:85:34:0,85,1005 +20 10081301 . A . . END=10081304 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:96:34:0,96,1440 +20 10081305 . G . . END=10081308 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081309 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:92:35:0,92,974 +20 10081310 . G . . END=10081313 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,102,1042 +20 10081314 . G . . END=10081316 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:93:35:0,93,1072 +20 10081317 . C . . END=10081318 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081319 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1119 +20 10081320 . G . . END=10081325 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,99,1096 +20 10081326 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:82:35:0,82,997 +20 10081327 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081328 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1090 +20 10081329 . A . . END=10081330 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081331 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1095 +20 10081332 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,99,1485 +20 10081333 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:94:36:0,94,1093 +20 10081334 . G . . END=10081347 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:34:0,99,1485 +20 10081348 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1090 +20 10081349 . C . . END=10081350 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1530 +20 10081351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:94:35:0,94,1055 +20 10081352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,99,1485 +20 10081353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:74:34:0,74,1016 +20 10081354 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1485 +20 10081355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:94:35:0,94,1059 +20 10081356 . C . . END=10081358 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:33:0,99,1009 +20 10081359 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:86:34:0,86,997 +20 10081360 . A . . END=10081361 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1485 +20 10081362 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:84:32:0,84,941 +20 10081363 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:76:31:0,76,910 +20 10081364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:33:0,93,1395 +20 10081365 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:86:34:0,86,1086 +20 10081366 . G . . END=10081369 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,99,1485 +20 10081370 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:77:37:0,77,1114 +20 10081371 . G . . END=10081374 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:36:0,105,1575 +20 10081375 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1094 +20 10081376 . C . . END=10081378 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,102,1070 +20 10081379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1113 +20 10081380 . G . . END=10081381 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,105,1575 +20 10081382 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:87:38:0,87,1157 +20 10081383 . A . . END=10081384 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:38:0,102,1530 +20 10081385 . A . . END=10081391 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:34:0,96,1440 +20 10081392 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:87:35:0,87,1037 +20 10081393 . T . . END=10081394 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,102,1530 +20 10081395 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1395 +20 10081396 . A . . END=10081405 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:37:0,99,1485 +20 10081406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:94:40:0,94,1209 +20 10081407 . A . . END=10081414 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:39:0,108,1620 +20 10081415 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:95:39:0,95,1186 +20 10081416 . C . . END=10081422 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:39:0,104,1189 +20 10081423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:97:39:0,97,1216 +20 10081424 . A . . END=10081437 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:39:0,106,1212 +20 10081438 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:97:38:0,97,1164 +20 10081439 . C . . END=10081448 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:37:0,105,1575 +20 10081449 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:97:37:0,97,1153 +20 10081450 . A . . END=10081576 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:37:0,102,1154 +20 10081577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:87:40:0,87,1122 +20 10081578 . C . . END=10081589 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,100,1067 +20 10081590 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:85:39:0,85,1111 +20 10081591 . A . . END=10081618 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:37:0,99,1163 +20 10081619 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:96:37:0,96,1119 +20 10081620 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:81:36:0,81,1071 +20 10081621 . A . . END=10081623 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1530 +20 10081624 . G . . END=10081625 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1067 +20 10081626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,100,1101 +20 10081627 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:90:36:0,90,1028 +20 10081628 . T . . END=10081629 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,102,1530 +20 10081630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1141 +20 10081631 . T . . END=10081640 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081641 . A . . END=10081643 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:93:35:0,93,1395 +20 10081644 . A . . END=10081650 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:87:34:0,87,1305 +20 10081651 . A . . END=10081654 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:90:32:0,90,1350 +20 10081655 . A . . END=10081659 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:81:30:0,81,923 +20 10081660 . C . . END=10081661 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081662 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:90:36:0,90,1071 +20 10081663 . G . . END=10081666 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,99,1485 +20 10081667 . T . . END=10081677 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:90:32:0,90,1350 +20 10081678 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:68:33:0,68,967 +20 10081679 . A . . END=10081680 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:90:33:0,90,1350 +20 10081681 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:87:33:0,87,1305 +20 10081682 . A . . END=10081692 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:91:32:0,91,1061 +20 10081693 . T . . END=10081695 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:34:0,99,1485 +20 10081696 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:96:35:0,96,1440 +20 10081697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:88:35:0,88,953 +20 10081698 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:96:33:0,96,1440 +20 10081699 . A . . END=10081710 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:34:0,99,1485 +20 10081711 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:89:35:0,89,972 +20 10081712 . A . . END=10081732 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1145 +20 10081733 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:90:38:0,90,1136 +20 10081734 . T . . END=10081743 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:38:0,102,1530 +20 10081744 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:92:40:0,92,1169 +20 10081745 . A . . END=10081749 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:37:0,105,1116 +20 10081750 . C A, . . BaseQRankSum=2.67;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=298800,83;ReadPosRankSum=-4.060e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:44,39,0:83:99:.:1382,0,1525,1514,1643,3157:23,21,19,20 ./.:.:38:95:38:0,95,1088,95,1088,1088 +20 10081751 . T . . END=10081774 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:40:99:34:0,99,1072 +20 10081775 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:36:79:36:0,79,1048 +20 10081776 . A . . END=10081787 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:38:99:36:0,105,1193 +20 10081788 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:40:88:40:0,88,1156 +20 10081789 . T . . END=10081799 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:41:99:37:0,99,1143 +20 10081800 . C T, . . BaseQRankSum=0.241;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=244800,68;ReadPosRankSum=-2.622e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,33,0:68:99:.:1138,0,1222,1244,1322,2565:26,9,17,16 ./.:.:41:99:37:0,99,1143,99,1143,1143 +20 10081801 . A . . END=10081852 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:99:37:0,99,1143 +20 10081853 . T . . END=10081854 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:94:38:0,94,1123 +20 10081855 . T . . END=10081967 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:40:0,111,1224 +20 10081968 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:97:46:0,97,1329 +20 10081969 . A . . END=10082042 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:45:99:39:0,102,1297 +20 10082043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:81:38:0,81,1079 +20 10082044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:96:38:0,96,1440 +20 10082045 . T . . END=10082047 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:39:0,99,1485 +20 10082048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:98:39:0,98,1163 +20 10082049 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,99,1485 +20 10082050 . C . . END=10082056 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:92:34:0,92,1097 +20 10082057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:72:34:0,72,949 +20 10082058 . A . . END=10082061 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:90:33:0,90,1350 +20 10082062 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:87:33:0,87,1305 +20 10082063 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:56:33:0,56,904 +20 10082064 . A . . END=10082067 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:84:33:0,84,1260 +20 10082068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:90:35:0,90,1350 +20 10082069 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:87:34:0,87,1305 +20 10082070 . G . . END=10082073 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:90:32:0,90,1350 +20 10082074 . G . . END=10082075 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:84:32:0,84,1260 +20 10082076 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:78:32:0,78,914 +20 10082077 . G . . END=10082078 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:31:87:31:0,87,1305 +20 10082079 . C . . END=10082080 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:90:32:0,90,1350 +20 10082081 . A . . END=10082082 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:80:32:0,80,945 +20 10082083 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:90:32:0,90,1350 +20 10082084 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:81:32:0,81,972 +20 10082085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:75:30:0,75,890 +20 10082086 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:90:30:0,90,927 +20 10082087 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:75:30:0,75,898 +20 10082088 . A . . END=10082090 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:31:93:31:0,93,972 +20 10082091 . T . . END=10082092 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:99:33:0,99,1024 +20 10082093 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:86:33:0,86,993 +20 10082094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:99:33:0,99,1032 +20 10082095 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:91:35:0,91,988 +20 10082096 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:88:35:0,88,978 +20 10082097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:99:35:0,102,1530 +20 10082098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:94:35:0,94,1056 +20 10082099 . A . . END=10082105 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:99:34:0,99,1052 +20 10082106 . C . . END=10082107 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:96:33:0,96,1440 +20 10082108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:69:36:0,69,1022 +20 10082109 . G . . END=10082110 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:93:36:0,93,1395 +20 10082111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,102,1530 +20 10082112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:96:41:0,96,1106 +20 10082113 . T . . END=10082119 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:40:99:36:0,103,1068 +20 10082120 . A . . END=10082121 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:94:38:0,94,1067 +20 10082122 . G . . END=10082126 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:37:0,103,1098 +20 10082127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:81:39:0,81,1069 +20 10082128 . T . . END=10082131 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:37:0,105,1575 +20 10082132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:97:38:0,97,1138 +20 10082133 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,105,1575 +20 10082134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:84:37:0,84,1033 +20 10082135 . A . . END=10082137 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,108,1620 +20 10082138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:67:36:0,67,1014 +20 10082139 . T . . END=10082140 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:99:37:0,108,1620 +20 10082141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:98:37:0,98,1093 +20 10082142 . G . . END=10082148 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:38:0,108,1620 +20 10082149 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:84:38:0,84,1110 +20 10082150 . C . . END=10082156 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:99:37:0,102,1530 +20 10082157 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:85:41:0,85,1197 +20 10082158 . G . . END=10082162 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:99:41:0,108,1620 +20 10082163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:43:98:43:0,98,1276 +20 10082164 . A . . END=10082318 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:49:99:38:0,99,1147 +20 10082319 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:47:96:47:0,96,1319 +20 10082320 . C . . END=10082372 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:42:0,101,1299 +20 10082373 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:96:46:0,96,1260 +20 10082374 . A . . END=10082447 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:39:0,108,1180 +20 10082448 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:94:42:0,94,1180 +20 10082449 . A . . END=10082475 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:44:99:39:0,112,1170 +20 10082476 . A G, . . BaseQRankSum=1.25;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-5.430e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:43:0,111,1665,111,1665,1665 ./.:19,21,0:40:99:.:552,0,487,609,549,1158:10,9,13,8 +20 10082477 . C . . END=10082540 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:45:99:41:0,104,1252 +20 10082541 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:47:92:47:0,92,1352 +20 10082542 . T . . END=10082636 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:52:99:45:0,104,1432 +20 10082637 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:48:96:48:0,96,1317 +20 10082638 . T . . END=10082803 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:40:0,99,1211 +20 10082804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:43:96:43:0,96,1286 +20 10082805 . T . . END=10082807 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:42:0,120,1800 +20 10082808 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:93:42:0,93,1217 +20 10082809 . A . . END=10082877 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:37:0,99,1146 +20 10082878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:93:38:0,93,1395 +20 10082879 . A . . END=10082884 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:38:0,99,1192 +20 10082885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:83:43:0,83,1521 ./.:38:77:38:0,77,1130 +20 10082886 . C . . END=10082891 GT:DP:GQ:MIN_DP:PL ./.:43:99:42:0,99,1485 ./.:36:99:35:0,102,1530 +20 10082892 . C T, . . DP=75;ExcessHet=3.01;RAW_MQandDP=267241,75 GT:AD:DP:GQ:PL:SB ./.:0,44,0:44:99:1741,132,0,1741,132,1741:0,0,20,24 ./.:0,31,0:31:93:967,93,0,967,93,967:0,0,17,14 +20 10082893 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:35:99:35:0,105,1072 +20 10082894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:97:36:0,97,1085 +20 10082895 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:35:99:35:0,105,1087 +20 10082896 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:97:36:0,97,1100 +20 10082897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:99:36:0,108,1155 +20 10082898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:73:36:0,73,1054 +20 10082899 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:93:36:0,93,1086 +20 10082900 . C . . END=10082901 GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:38:99:36:0,105,1102 +20 10082902 . C . . END=10082903 GT:DP:GQ:MIN_DP:PL ./.:38:96:38:0,96,1440 ./.:38:99:36:0,105,1102 +20 10082904 . C . . END=10082905 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,102,1530 ./.:38:99:36:0,105,1102 +20 10082906 . T . . END=10082909 GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:38:99:36:0,105,1102 +20 10082910 . A . . . GT:DP:GQ:MIN_DP:PL ./.:35:83:35:0,83,1220 ./.:38:99:36:0,105,1102 +20 10082911 . C . . END=10082913 GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:38:99:36:0,105,1102 +20 10082914 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:40:86:40:0,86,1121 +20 10082915 . C . . END=10082918 GT:DP:GQ:MIN_DP:PL ./.:37:99:35:0,99,1485 ./.:38:99:36:0,99,1017 +20 10082919 . A . . END=10082924 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:38:99:36:0,99,1017 +20 10082925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:38:0,99,1485 ./.:38:99:36:0,99,1017 +20 10082926 . C . . END=10082930 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:38:99:36:0,99,1017 +20 10082931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:75:38:0,75,1443 ./.:38:99:36:0,99,1017 +20 10082932 . C . . END=10082938 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,99,1017 +20 10082939 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:94:37:0,94,1136 +20 10082940 . C . . END=10082942 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:35:0,99,1485 +20 10082943 . G . . END=10082953 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:32:0,90,980 +20 10082954 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,983 +20 10082955 . C . . END=10082958 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:93:32:0,93,1395 +20 10082959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:84:34:0,84,1018 +20 10082960 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10082961 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:96:35:0,96,1440 +20 10082962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:37:0,102,1530 +20 10082963 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:92:37:0,92,1084 +20 10082964 . C . . END=10082967 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,102,1530 +20 10082968 . T . . END=10082971 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:95:37:0,95,1115 +20 10082972 . T . . END=10082973 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082974 . C . . END=10082975 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:38:0,96,1124 +20 10082976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082977 . A . . END=10082983 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:93:33:0,93,1084 +20 10082984 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:85:37:0,85,1052 +20 10082985 . C . . END=10082986 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082987 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:87:38:0,87,1133 +20 10082988 . A . . END=10082990 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:96:36:0,96,1440 +20 10082991 . G . . END=10082998 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:36:0,99,1130 +20 10082999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:81:33:0,81,984 +20 10083000 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:91:36:0,91,1067 +20 10083001 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10083002 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:77:36:0,77,1024 +20 10083003 . A . . END=10083006 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:90:34:0,90,1350 +20 10083007 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:87:34:0,87,1032 +20 10083008 . C . . END=10083014 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:93:33:0,93,1061 +20 10083015 . A . . END=10083016 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:78:32:0,78,933 +20 10083017 . G . . END=10083018 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:95:32:0,95,893 +20 10083019 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:85:32:0,85,960 +20 10083020 . T . . END=10083022 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:92:31:0,92,936 +20 10083023 . C . . END=10083028 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,102,1041 +20 10083029 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:94:35:0,94,1065 +20 10083030 . A . . END=10083046 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:33:0,99,1026 +20 10083047 . T . . END=10083058 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:90:32:0,90,1350 +20 10083059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:82:31:0,82,972 +20 10083060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10083061 . C . . END=10083062 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:76:32:0,76,918 +20 10083063 . T . . END=10083065 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:31:0,90,1350 +20 10083066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:87:29:0,87,895 +20 10083067 . C . . END=10083068 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:31:0,90,1350 +20 10083069 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:77:31:0,77,894 +20 10083070 . T . . END=10083072 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:92:31:0,92,926 +20 10083073 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:87:29:0,87,847 +20 10083074 . T . . END=10083076 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:96:32:0,96,977 +20 10083077 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:74:30:0,74,862 +20 10083078 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:96:32:0,96,1025 +20 10083079 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:63:34:0,63,991 +20 10083080 . T . . END=10083081 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,102,1085 +20 10083082 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:87:34:0,87,999 +20 10083083 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,105,1575 +20 10083084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:89:35:0,89,1057 +20 10083085 . T . . END=10083096 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:36:0,99,1088 +20 10083097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:93:42:0,93,1273 +20 10083098 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:78:42:0,78,1162 +20 10083099 . A . . END=10083139 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,99,1340 +20 10083140 . T . . END=10083142 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:37:0,96,1440 +20 10083143 . T . . END=10083149 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,99,1485 +20 10083150 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:85:34:0,85,978 +20 10083151 . T . . END=10083167 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:33:0,99,1040 +20 10083168 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:92:40:0,92,1180 +20 10083169 . T . . END=10083175 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:37:0,102,1220 +20 10083176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:90:38:0,90,1132 +20 10083177 . C . . END=10083190 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,108,1141 +20 10083191 . A T, . . BaseQRankSum=-1.131e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-6.800e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:18,20,0:38:99:.:512,0,452,566,512,1078:11,7,10,10 +20 10083192 . C . . END=10083211 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:99:41:0,109,1223 +20 10083212 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:83:43:0,83,1119 +20 10083213 . C . . END=10083230 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:99:42:0,108,1262 +20 10083231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:74:44:0,74,1206 +20 10083232 . T . . END=10083238 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,108,1620 +20 10083239 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:89:40:0,89,1148 +20 10083240 . C . . END=10083277 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,102,1101 +20 10083278 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:94:37:0,94,1074 +20 10083279 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,102,1530 +20 10083280 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:53:35:0,53,919 +20 10083281 . T . . END=10083282 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,99,1090 +20 10083283 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:92:37:0,92,1118 +20 10083284 . A . . END=10083291 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,102,1150 +20 10083292 . G . . END=10083293 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:94:38:0,94,1086 +20 10083294 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:78:37:0,78,1043 +20 10083295 . A . . END=10083309 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:37:0,99,1485 +20 10083310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:93:37:0,93,1097 +20 10083311 . T . . END=10083312 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,99,1120 +20 10083313 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:71:37:0,71,1016 +20 10083314 . C . . END=10083341 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:36:0,105,1075 +20 10083342 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:93:40:0,93,1205 +20 10083343 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:40:0,104,1211 +20 10083344 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:83:39:0,83,1140 +20 10083345 . C . . END=10083349 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:39:0,102,1530 +20 10083350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:89:40:0,89,1193 +20 10083351 . A . . END=10083384 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:37:0,105,1155 +20 10083385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:82:38:0,82,1160 +20 10083386 . A . . END=10083387 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,108,1620 +20 10083388 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:84:39:0,84,1155 +20 10083389 . T . . END=10083395 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,102,1530 +20 10083396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:67:41:0,67,1215 +20 10083397 . G . . END=10083454 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:47:99:42:0,106,1414 +20 10083455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:47:94:47:0,94,1236 +20 10083456 . T . . END=10083566 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:48:99:40:0,105,1312 +20 10083567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:92:45:0,92,1279 +20 10083568 . T . . END=10083655 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:40:0,103,1143 +20 10083656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:92:41:0,92,1192 +20 10083657 . A . . END=10083663 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,112,1072 +20 10083664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:97:40:0,97,1165 +20 10083665 . A . . END=10083675 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,108,1197 +20 10083676 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:90:41:0,90,1207 +20 10083677 . G . . END=10083700 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:38:0,99,1135 +20 10083701 . A . . END=10083705 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:90:40:0,90,1150 +20 10083706 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:40:0,102,1530 +20 10083707 . A . . END=10083711 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:91:36:0,91,1073 +20 10083712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:89:35:0,89,991 +20 10083713 . T . . END=10083714 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:96:35:0,96,1440 +20 10083715 . C . . END=10083724 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:33:0,99,1013 +20 10083725 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:85:34:0,85,1014 +20 10083726 . G . . END=10083737 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:91:33:0,91,1009 +20 10083738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:85:32:0,85,989 +20 10083739 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:93:32:0,93,1395 +20 10083740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:87:33:0,87,949 +20 10083741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:93:31:0,93,984 +20 10083742 . A . . END=10083753 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:70:29:0,70,849 +20 10083754 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:32:0,90,1350 +20 10083755 . G . . END=10083756 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:87:30:0,87,1305 +20 10083757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:79:30:0,79,920 +20 10083758 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:81:30:0,81,1215 +20 10083759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:79:30:0,79,913 +20 10083760 . C . . END=10083771 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:81:29:0,81,974 +20 10083772 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:76:29:0,76,862 +20 10083773 . C . . END=10083775 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:84:30:0,84,1260 +20 10083776 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:78:30:0,78,896 +20 10083777 . A . . END=10083783 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:84:29:0,84,1260 +20 10083784 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:71:29:0,71,813 +20 10083785 . T . . END=10083787 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:28:81:27:0,81,838 +20 10083788 . A . . END=10083789 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:93:32:0,93,1395 +20 10083790 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:55:33:0,55,948 +20 10083791 . A . . END=10083797 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10083798 . A . . END=10083801 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:84:31:0,84,1260 +20 10083802 . C . . END=10083807 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1025 +20 10083808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,944 +20 10083809 . T . . END=10083812 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:31:0,90,1350 +20 10083813 . A . . END=10083823 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1056 +20 10083824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:96:36:0,96,1075 +20 10083825 . G . . END=10083849 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,102,1128 +20 10083850 . A . . END=10083851 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:37:0,96,1440 +20 10083852 . C . . END=10084120 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:51:99:36:0,99,1185 +20 10084121 . C T, . . BaseQRankSum=-1.401e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=-4.290e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:1,46,0:47:99:.:1486,107,0,1489,138,1521:0,1,17,29 +20 10084122 . T . . END=10084188 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:50:99:40:0,108,1299 +20 10084189 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:96:40:0,96,1186 +20 10084190 . A . . END=10084209 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:34:0,99,1069 +20 10084210 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:89:38:0,89,1174 +20 10084211 . T . . END=10084238 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:36:0,102,1178 +20 10084239 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:77:37:0,77,1046 +20 10084240 . T . . END=10084255 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,100,1099 +20 10084256 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:87:40:0,87,1258 +20 10084257 . T . . END=10084268 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,111,1332 +20 10084269 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:97:43:0,97,1303 +20 10084270 . T . . END=10084457 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:49:99:41:0,102,1277 +20 10084458 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:53:97:53:0,97,1503 +20 10084459 . T . . END=10084574 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:50:99:38:0,99,1175 +20 10084575 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:88:40:0,88,1201 +20 10084576 . T . . END=10084599 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:38:0,103,1215 +20 10084600 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:93:42:0,93,1312 +20 10084601 . G . . END=10084625 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,99,1153 +20 10084626 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:98:37:0,98,1124 +20 10084627 . A . . END=10084631 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:34:0,102,1044 +20 10084632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:91:35:0,91,1023 +20 10084633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:35:0,105,1091 +20 10084634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:96:37:0,96,1096 +20 10084635 . A . . END=10084637 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:36:0,107,1043 +20 10084638 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:89:37:0,89,1055 +20 10084639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:90:39:0,90,1213 +20 10084640 . G . . END=10084651 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,109,1178 +20 10084652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:86:39:0,86,1078 +20 10084653 . T . . END=10084672 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:99:39:0,104,1153 +20 10084673 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:97:38:0,97,1042 +20 10084674 . T . . END=10084760 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:37:0,105,1159 +20 10084761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:94:39:0,94,1170 +20 10084762 . G . . END=10084780 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,103,1193 +20 10084781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:91:38:0,91,1172 +20 10084782 . C . . END=10084818 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,99,1169 +20 10084819 . C . . END=10084827 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:90:34:0,90,1350 +20 10084828 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10084829 . C . . END=10084833 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1350 +20 10084834 . C . . END=10084838 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:80:33:0,80,1011 +20 10084839 . T . . END=10084840 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:78:32:0,78,1170 +20 10084841 . T . . END=10084848 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:81:29:0,81,1215 +20 10084849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:53:29:0,53,878 +20 10084850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:87:30:0,87,1305 +20 10084851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:31:0,90,1350 +20 10084852 . T . . END=10084853 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:81:31:0,81,984 +20 10084854 . T . . END=10084863 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:31:0,90,1350 +20 10084864 . A . . END=10084871 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:81:31:0,81,980 +20 10084872 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:78:33:0,78,1009 +20 10084873 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:87:33:0,87,1305 +20 10084874 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10084875 . A . . END=10084883 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:82:30:0,82,1011 +20 10084884 . T . . END=10084896 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:30:0,90,874 +20 10084897 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,1003 +20 10084898 . C . . END=10084902 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:93:34:0,93,1395 +20 10084903 . C . . END=10084905 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1485 +20 10084906 . C . . END=10084915 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1350 +20 10084916 . G . . END=10084921 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1485 +20 10084922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:95:39:0,95,1146 +20 10084923 . G . . END=10085053 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:99:40:0,99,1192 +20 10085054 . A G, . . DP=79;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:0,41,0:41:99:.:1236,123,0,1236,123,1236:0,0,22,19 +20 10085055 . A . . END=10085162 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:40:0,105,1230 +20 10085163 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:97:43:0,97,1221 +20 10085164 . A . . END=10085205 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:99:38:0,99,1207 +20 10085206 . C . . END=10085210 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:90:38:0,90,1350 +20 10085211 . A T, . . BaseQRankSum=-1.501e+00;DP=114;ExcessHet=3.01;MQRankSum=-1.028e+00;RAW_MQandDP=270841,76;ReadPosRankSum=-1.405e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,36,0:76:99:.:1239,0,1443,1360,1551,2911:21,19,17,19 ./.:.:39:90:38:0,90,1350,90,1350,1350 +20 10085212 . G . . END=10085215 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:90:38:0,90,1350 +20 10085216 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:85:36:0,85,1149 +20 10085217 . T . . END=10085221 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:96:34:0,96,1440 +20 10085222 . G . . END=10085228 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10085229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:96:34:0,96,1440 +20 10085230 . T . . END=10085246 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:33:0,99,1041 +20 10085247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:91:38:0,91,1164 +20 10085248 . T . . END=10085319 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:99:38:0,104,1188 +20 10085320 . C T, . . DP=95;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:54:0,120,1800,120,1800,1800 ./.:0,40,0:40:99:.:1269,120,0,1269,120,1269:0,0,22,18 +20 10085321 . A . . END=10085401 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:37:0,99,1185 +20 10085402 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:82:38:0,82,1103 +20 10085403 . G . . END=10085422 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:99:37:0,99,1158 +20 10085423 . T . . END=10085428 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:96:35:0,96,1440 +20 10085429 . A . . END=10085431 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10085432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:93:36:0,93,1395 +20 10085433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:85:35:0,85,1073 +20 10085434 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:96:35:0,96,1440 +20 10085435 . T . . END=10085494 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:37:0,102,1184 +20 10085495 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:97:43:0,97,1266 +20 10085496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:99:43:0,100,1366 +20 10085497 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:97:42:0,97,1288 +20 10085498 . G . . END=10085499 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:84:41:0,84,1223 +20 10085500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:97:42:0,97,1287 +20 10085501 . C . . END=10085502 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:39:0,116,1143 +20 10085503 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:89:40:0,89,1202 +20 10085504 . A . . END=10085506 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,107,1191 +20 10085507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:93:41:0,93,1251 +20 10085508 . A . . END=10085510 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:38:0,112,1230 +20 10085511 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:94:41:0,94,1211 +20 10085512 . G . . END=10085514 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,111,1665 +20 10085515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:77:38:0,77,1122 +20 10085516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:93:40:0,93,1153 +20 10085517 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:41:0,111,1665 +20 10085518 . G . . END=10085519 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:90:40:0,90,1171 +20 10085520 . C . . END=10085859 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:49:99:37:0,99,1160 +20 10085860 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:92:37:0,92,1155 +20 10085861 . T . . END=10085871 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:37:0,102,1530 +20 10085872 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:95:37:0,95,1155 +20 10085873 . A . . END=10085879 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:36:0,99,1129 +20 10085880 . T . . END=10085884 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:93:37:0,93,1395 +20 10085885 . T . . END=10085895 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:33:0,99,1064 +20 10085896 . A . . END=10085905 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:92:34:0,92,1075 +20 10085906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,102,1530 +20 10085907 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:87:35:0,87,1053 +20 10085908 . C . . END=10085917 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:93:33:0,93,1075 +20 10085918 . A . . END=10085921 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:34:0,99,1485 +20 10085922 . T . . END=10085923 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:93:35:0,93,1395 +20 10085924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10085925 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:96:36:0,96,1104 +20 10085926 . A . . END=10085955 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:35:0,99,1485 +20 10085956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:87:37:0,87,1094 +20 10085957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:37:0,108,1620 +20 10085958 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:94:37:0,94,1066 +20 10085959 . G . . END=10085960 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:99:37:0,108,1620 +20 10085961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:92:36:0,92,1095 +20 10085962 . G . . END=10086002 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:99:37:0,108,1119 +20 10086003 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:93:41:0,93,1167 +20 10086004 . C . . END=10086063 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:38:0,102,1155 +20 10086064 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:94:40:0,94,1152 +20 10086065 . C . . END=10086068 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,102,1183 +20 10086069 . A . . END=10086070 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:96:39:0,96,1440 +20 10086071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:40:0,99,1485 +20 10086072 . A . . END=10086074 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:96:38:0,96,1440 +20 10086075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:99:39:0,99,1485 +20 10086076 . A . . END=10086080 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:96:35:0,96,1440 +20 10086081 . T . . END=10086082 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:35:0,99,1485 +20 10086083 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:71:35:0,71,1007 +20 10086084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:89:35:0,89,1076 +20 10086085 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10086086 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:72:35:0,72,1049 +20 10086087 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:64:36:0,64,1029 +20 10086088 . A . . END=10086091 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:72:35:0,72,1005 +20 10086092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10086093 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:75:36:0,75,1008 +20 10086094 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:69:34:0,69,992 +20 10086095 . A . . END=10086101 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:72:35:0,72,971 +20 10086102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:53:35:0,53,923 +20 10086103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:72:35:0,72,984 +20 10086104 . A . . END=10086105 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:81:34:0,81,1215 +20 10086106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:69:34:0,69,997 +20 10086107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:71:34:0,71,1016 +20 10086108 . A . . END=10086109 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:33:60:31:0,60,925 +20 10086110 . G A, . . BaseQRankSum=-3.430e-01;DP=108;ExcessHet=3.01;MQRankSum=-6.800e-01;RAW_MQandDP=380523,108;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL:SB ./.:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 ./.:0,27,0:27:81:868,81,0,868,81,868:0,0,14,13 +20 10086111 . C . . END=10086114 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:63:32:0,63,899 +20 10086115 . A . . END=10086117 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:81:32:0,81,1215 +20 10086118 . A . . END=10086120 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:63:31:0,63,924 +20 10086121 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:31:27:31:0,27,784 +20 10086122 . A . . END=10086123 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:87:30:0,87,1305 +20 10086124 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:78:30:0,78,873 +20 10086125 . A . . END=10086132 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:81:28:0,81,1215 +20 10086133 . G . . END=10086141 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:29:76:28:0,76,879 +20 10086142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:81:28:0,81,1215 +20 10086143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:73:28:0,73,837 +20 10086144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:50:28:0,50,791 +20 10086145 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:78:28:0,78,1170 +20 10086146 . C . . END=10086147 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10086148 . A . . END=10086149 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:93:33:0,93,1395 +20 10086150 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:64:33:0,64,937 +20 10086151 . A . . END=10086154 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10086155 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:86:34:0,86,991 +20 10086156 . A . . END=10086160 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:91:33:0,91,1054 +20 10086161 . A . . END=10086162 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:87:35:0,87,1305 +20 10086163 . A . . END=10086170 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:90:33:0,90,1350 +20 10086171 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:73:33:0,73,926 +20 10086172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:68:32:0,68,901 +20 10086173 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:83:32:0,83,946 +20 10086174 . C . . END=10086177 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:30:0,90,899 +20 10086178 . A . . END=10086181 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:85:30:0,85,929 +20 10086182 . G . . END=10086190 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:30:0,90,884 +20 10086191 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:75:32:0,75,968 +20 10086192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:82:32:0,82,974 +20 10086193 . G . . END=10086196 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10086197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:31:78:31:0,78,915 +20 10086198 . T . . END=10086201 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10086202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:84:33:0,84,991 +20 10086203 . T . . END=10086204 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:99:33:0,99,1027 +20 10086205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:88:33:0,88,1001 +20 10086206 . C . . END=10086207 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:99:33:0,99,1010 +20 10086208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:90:34:0,90,1036 +20 10086209 . T . . END=10086210 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:36:97:36:0,97,1048 +20 10086212 . T . . END=10086232 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:39:99:34:0,102,1043 +20 10086233 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:96:38:0,96,1083 +20 10086234 . C . . END=10086260 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:99:36:0,99,1084 +20 10086261 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:98:38:0,98,1105 +20 10086262 . T . . END=10086269 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:37:99:34:0,99,998 +20 10086270 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:96:32:0,96,893 +20 10086271 . A . . END=10086282 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:99:36:0,102,1102 +20 10086283 . G T, . . BaseQRankSum=2.30;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=442800,123;ReadPosRankSum=1.89 GT:AD:DP:GQ:PL:SB ./.:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 ./.:1,37,0:38:99:1096,104,0,1098,111,1105:1,0,20,17 +20 10086284 . G . . END=10086293 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:38:99:37:0,99,1082 +20 10086294 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:90:39:0,90,1125 +20 10086295 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:99:39:0,99,1485 +20 10086296 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:90:39:0,90,1106 +20 10086297 . A . . END=10086303 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:99:35:0,99,1485 +20 10086304 . A . . END=10086306 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:93:34:0,93,1395 +20 10086307 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:87:35:0,87,1305 +20 10086308 . T . . END=10086309 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:90:36:0,90,1350 +20 10086310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:74:35:0,74,954 +20 10086311 . A . . END=10086317 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:90:33:0,90,1350 +20 10086318 . T . . END=10086323 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:33:99:33:0,99,1026 +20 10086324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:95:36:0,95,1103 +20 10086325 . A . . END=10086337 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:99:37:0,102,1235 +20 10086338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:43:88:43:0,88,1225 +20 10086339 . T . . END=10086369 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:46:99:41:0,108,1268 +20 10086370 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:41:91:41:0,91,1176 +20 10086371 . G . . END=10086618 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:48:99:36:0,99,1127 +20 10086619 . T A, . . BaseQRankSum=0.256;DP=106;ExcessHet=3.01;MQRankSum=-1.312e+00;RAW_MQandDP=249241,70;ReadPosRankSum=-7.600e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,25,0:70:99:.:825,0,1603,961,1679,2639:18,27,9,16 ./.:.:48:99:36:0,99,1127,99,1127,1127 +20 10086620 . T . . END=10086846 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:48:99:36:0,99,1127 +20 10086847 . G T, . . BaseQRankSum=-2.161e+00;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.993 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:81:99:65:.:.:0,120,1800,120,1800,1800 ./.:33,2,0:35:84:.:0|1:10086847_G_T:0,84,922,98,927,941:16,17,2,0 +20 10086848 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:36:99:36:0,102,1530 +20 10086849 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:36:60:36:0,60,975 +20 10086850 . A . . END=10086852 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:35:96:33:0,96,1440 +20 10086853 . G A, . . BaseQRankSum=3.91;DP=106;ExcessHet=3.01;MQRankSum=-1.770e-01;RAW_MQandDP=376610,106;ReadPosRankSum=-1.000e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:41,32,0:73:99:.:.:1031,0,1280,1154,1376,2530:21,20,17,15 ./.:0,33,0:33:99:0|1:10086847_G_T:1052,99,0,1052,99,1052:0,0,17,16 +20 10086854 . T . . END=10086857 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:90:33:0,90,1010 +20 10086858 . T . . END=10086864 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10086865 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:75:35:0,75,988 +20 10086866 . A . . END=10086884 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:38:99:35:0,99,1032 +20 10086885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:82:40:0,82,1109 +20 10086886 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:99:40:0,117,1755 +20 10086887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:86:40:0,86,1028 +20 10086888 . G . . END=10086925 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:39:99:36:0,104,1121 +20 10086926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:38:77:38:0,77,978 +20 10086927 . C . . END=10086931 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:39:99:37:0,102,1530 +20 10086932 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:37:98:37:0,98,1055 +20 10086933 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10086934 . T . . END=10086945 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:37:93:33:0,93,976 +20 10086946 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:88:35:0,88,1025 +20 10086947 . G . . END=10086950 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:90:30:0,90,909 +20 10086951 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:32:96:32:0,96,991 +20 10086953 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086954 . G A, . . BaseQRankSum=2.61;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=363600,101;ReadPosRankSum=-5.340e-01 GT:AD:DP:GQ:PL:SB ./.:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 ./.:0,31,0:31:92:919,92,0,919,92,919:0,0,10,21 +20 10086955 . C . . END=10086956 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10086957 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:91:37:0,91,1044 +20 10086958 . G . . END=10086989 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:41:99:36:0,102,1144 +20 10086990 . A . . END=10086991 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:85:37:0,85,1057 +20 10086992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:99:38:0,108,1620 +20 10086993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:97:38:0,97,1148 +20 10086994 . T . . END=10086999 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10087000 . C . . END=10087011 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:90:31:0,90,1350 +20 10087012 . A . . END=10087016 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10087017 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10087018 . G . . END=10087021 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:87:32:0,87,1305 +20 10087022 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:78:30:0,78,910 +20 10087023 . T . . END=10087039 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087040 . T . . END=10087053 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:30:0,90,932 +20 10087054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:74:31:0,74,936 +20 10087055 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:81:31:0,81,944 +20 10087056 . A . . END=10087063 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:30:0,90,970 +20 10087064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:89:35:0,89,1062 +20 10087065 . T . . END=10087066 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:96:34:0,96,1440 +20 10087067 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:73:33:0,73,978 +20 10087068 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10087069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:64:32:0,64,945 +20 10087070 . A . . END=10087077 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:32:0,90,1014 +20 10087078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087079 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:91:34:0,91,1035 +20 10087080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:84:33:0,84,967 +20 10087081 . A . . END=10087092 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10087093 . A . . END=10087094 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:87:32:0,87,1305 +20 10087095 . C . . END=10087106 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:75:30:0,75,895 +20 10087107 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:57:30:0,57,880 +20 10087108 . A . . END=10087110 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:72:27:0,72,1080 +20 10087111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:69:27:0,69,1035 +20 10087112 . C . . END=10087119 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:72:26:0,72,838 +20 10087120 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:64:27:0,64,760 +20 10087121 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:75:26:0,75,1125 +20 10087122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:66:26:0,66,748 +20 10087123 . T . . END=10087131 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:72:25:0,72,737 +20 10087132 . T . . END=10087135 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:28:81:28:0,81,848 +20 10087136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:72:29:0,72,865 +20 10087137 . T . . END=10087138 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:84:29:0,84,1260 +20 10087139 . C . . END=10087140 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:62:28:0,62,852 +20 10087141 . T . . END=10087142 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10087143 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:61:29:0,61,879 +20 10087144 . A . . END=10087155 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:81:27:0,81,846 +20 10087156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:77:30:0,77,933 +20 10087157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:93:31:0,93,964 +20 10087158 . T . . END=10087164 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:84:30:0,84,1260 +20 10087165 . G . . END=10087168 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:31:0,90,1350 +20 10087169 . A . . END=10087173 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:84:32:0,84,1260 +20 10087174 . A . . END=10087175 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:32:0,90,1350 +20 10087176 . C . . END=10087179 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:83:31:0,83,1014 +20 10087180 . C . . END=10087186 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:30:0,90,940 +20 10087187 . A . . END=10087194 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:87:29:0,87,921 +20 10087195 . G . . END=10087196 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10087197 . A . . END=10087201 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:81:32:0,81,968 +20 10087202 . T . . END=10087210 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10087211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:70:32:0,70,999 +20 10087212 . T . . END=10087216 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10087217 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10087218 . C . . END=10087219 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:93:31:0,93,1002 +20 10087220 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:85:34:0,85,1057 +20 10087221 . C . . END=10087222 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:99:34:0,99,1128 +20 10087223 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:36:87:36:0,87,1080 +20 10087224 . T . . END=10087225 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10087226 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:94:37:0,94,1133 +20 10087227 . T . . END=10087229 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:36:99:36:0,102,1530 +20 10087230 . A G, . . BaseQRankSum=-1.427e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.01;MQRankSum=1.71;RAW_MQandDP=455261,130;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL:SB ./.:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 ./.:1,33,0:34:66:957,66,0,960,97,992:1,0,17,16 +20 10087231 . C . . END=10087393 GT:DP:GQ:MIN_DP:PL ./.:101:99:84:0,120,1800 ./.:46:99:38:0,99,1150 +20 10087394 . T G, . . BaseQRankSum=-2.340e+00;DP=122;ExcessHet=3.01;MQRankSum=1.21;RAW_MQandDP=299641,84;ReadPosRankSum=0.885 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,49,0:84:99:.:1717,0,1186,1823,1334,3156:21,14,24,25 ./.:.:46:99:38:0,99,1150,99,1150,1150 +20 10087395 . T . . END=10087438 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:38:0,99,1150 +20 10087439 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:44:93:44:0,93,1266 +20 10087440 . T . . END=10087450 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:47:99:44:0,106,1300 +20 10087451 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:45:89:45:0,89,1335 +20 10087452 . A . . END=10087572 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:40:0,101,1289 +20 10087573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:47:91:47:0,91,1238 +20 10087574 . G . . END=10087627 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:40:0,111,1665 +20 10087628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:42:93:42:0,93,1220 +20 10087629 . C . . END=10087662 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:40:99:38:0,102,1187 +20 10087663 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:97:37:0,97,1129 +20 10087664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:99:37:0,102,1530 +20 10087665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:93:37:0,93,1143 +20 10087666 . G . . END=10087673 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:99:34:0,102,968 +20 10087674 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:94:35:0,94,1049 +20 10087675 . C . . END=10087679 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087680 . A . . END=10087683 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:81:35:0,81,1215 +20 10087684 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:73:35:0,73,1032 +20 10087685 . A . . END=10087689 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:34:81:33:0,81,1215 +20 10087690 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:33:78:33:0,78,1007 +20 10087691 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:29:0,81,1215 +20 10087692 . T . . END=10087701 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:27:75:25:0,75,761 +20 10087702 . T . . END=10087709 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:28:0,81,1215 +20 10087710 . C . . END=10087712 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:78:29:0,78,1170 +20 10087713 . A . . END=10087714 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:33:84:32:0,84,1260 +20 10087715 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:31:68:31:0,68,964 +20 10087716 . T . . END=10087725 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087726 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:71:30:0,71,869 +20 10087727 . T . . END=10087731 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087732 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:75:29:0,75,1125 +20 10087733 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:49:29:0,49,772 +20 10087734 . T . . END=10087742 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:27:72:27:0,72,1080 +20 10087743 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:26:60:26:0,60,763 +20 10087744 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:26:75:26:0,75,1125 +20 10087745 . G . . END=10087750 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:28:0,81,822 +20 10087751 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:90:30:0,90,872 +20 10087752 . G . . END=10087753 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:87:29:0,87,856 +20 10087754 . T G, . . BaseQRankSum=0.355;DP=110;ExcessHet=3.01;MQRankSum=2.19;RAW_MQandDP=288141,79;ReadPosRankSum=-5.510e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,41,0:78:99:.:1376,0,1239,1488,1362,2849:23,14,24,17 ./.:.:31:90:31:0,90,1350,90,1350,1350 +20 10087755 . G . . END=10087757 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:31:90:31:0,90,1350 +20 10087758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:34:99:34:0,99,1485 +20 10087759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:34:56:34:0,56,951 +20 10087760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:34:93:34:0,93,1395 +20 10087761 . A . . END=10087762 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:76:36:0,76,988 +20 10087763 . A . . END=10087764 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:96:37:0,96,1440 +20 10087765 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:99:38:0,99,1485 +20 10087766 . T . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:67:37:0,67,982 +20 10087767 . T . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:93:38:0,93,1395 +20 10087768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:40:99:40:0,99,1485 +20 10087769 . A . . END=10087776 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:90:37:0,90,1350 +20 10087777 . T . . END=10087781 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:81:36:0,81,1114 +20 10087782 . A . . END=10087783 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:39:72:39:0,72,1080 +20 10087784 . G . . END=10087791 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:39:60:36:0,60,900 +20 10087792 . G . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:57:38:0,57,855 +20 10087793 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:54:38:0,54,810 +20 10087794 . C . . END=10087797 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:38:51:37:0,51,765 +20 10087798 . A . . END=10087799 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:48:37:0,48,720 +20 10087800 . A . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:42:37:0,42,630 +20 10087801 . T . . . GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:37:39:37:0,39,585 +20 10087802 . G . . END=10087803 GT:DP:GQ:MIN_DP:PL ./.:100:99:81:0,120,1800 ./.:36:36:35:0,36,540 +20 10087804 . C T, . . BaseQRankSum=1.94;DP=132;ExcessHet=3.01;MQRankSum=2.62;RAW_MQandDP=491010,132;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL:SB ./.:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 ./.:0,32,0:32:94:882,94,0,882,94,882:0,0,23,9 +20 10087805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:36:33:36:0,33,495 +20 10087806 . G . . END=10087810 GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:36:24:36:0,24,360 +20 10087811 . A . . END=10087814 GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:36:12:36:0,12,180 +20 10087815 . A . . END=10087819 GT:DP:GQ:MIN_DP:PL ./.:101:99:96:0,120,1800 ./.:37:3:37:0,3,45 +20 10087820 . CAG C,CAGAG,CAGAGAG, . . BaseQRankSum=-1.974e+00;DP=133;ExcessHet=3.01;MQRankSum=0.422;RAW_MQandDP=492900,133;ReadPosRankSum=-3.570e-01 GT:AD:DP:GQ:PL:SB ./.:35,0,18,0,0:53:99:466,669,2577,0,1197,1168,661,2237,1238,2189,661,2237,1238,2189,2189:17,18,8,10 ./.:0,0,0,32,0:32:96:1428,1428,1428,1428,1428,1428,96,96,96,0,1428,1428,1428,96,1428:0,0,21,11 +20 10087821 . A *, . . DP=134 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,0,0:53:99:.:466,669,2577,661,2237,2189:17,18,8,10 ./.:.:35:0:35:0,0,0,0,0,0 +20 10087822 . G *, . . DP=134 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,0,0:53:99:.:466,669,2577,661,2237,2189:17,18,8,10 ./.:.:35:72:35:0,72,995,72,995,995 +20 10087823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:72:35:0,72,995 +20 10087824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087825 . A . . END=10087826 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:72:35:0,72,1027 +20 10087827 . A . . END=10087832 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:35:99:35:0,102,1530 +20 10087833 . A . . END=10087834 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:36:90:35:0,90,1350 +20 10087835 . A . . END=10087836 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:36:83:36:0,83,1046 +20 10087837 . A . . END=10087840 GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:36:93:35:0,93,1395 +20 10087841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:83:0,120,1800 ./.:38:99:38:0,99,1485 +20 10087842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:0:82:0,0,2206 ./.:36:95:36:0,95,1055 +20 10087843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:73:82:0,73,2973 ./.:37:87:36:0,87,1305 +20 10087844 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:0:80:0,0,2190 ./.:37:87:36:0,87,1305 +20 10087845 . A . . END=10087846 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:37:87:36:0,87,1305 +20 10087847 . A . . END=10087860 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:90:34:0,90,1350 +20 10087861 . C . . END=10087865 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:33:83:32:0,83,871 +20 10087866 . C . . END=10087869 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:34:90:33:0,90,1350 +20 10087870 . A . . END=10087871 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:36:99:36:0,99,1485 +20 10087872 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:35:88:35:0,88,1036 +20 10087873 . A . . END=10087877 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:36:99:33:0,99,965 +20 10087878 . T . . END=10087879 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:35:84:34:0,84,860 +20 10087880 . C . . END=10087886 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:37:0,108,1620 +20 10087887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:76:41:0,76,1114 +20 10087888 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:41:0,106,1200 +20 10087889 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:60:39:0,60,932 +20 10087890 . A . . END=10087899 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:37:0,101,1079 +20 10087900 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:84:38:0,84,1053 +20 10087901 . G . . END=10087909 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:37:0,103,1190 +20 10087910 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:98:39:0,98,1045 +20 10087911 . A . . END=10087913 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:99:37:0,100,1142 +20 10087914 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:96:38:0,96,1096 +20 10087915 . C . . END=10087917 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:38:0,111,1665 +20 10087918 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:59:40:0,59,1086 +20 10087919 . A . . END=10087922 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:99:39:0,99,1150 +20 10087923 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:63:39:0,63,1069 +20 10087924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:90:38:0,90,1133 +20 10087925 . A . . END=10087940 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:37:0,103,1118 +20 10087941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:46:84:46:0,84,1209 +20 10087942 . T . . END=10088062 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:51:99:46:0,120,1800 +20 10088063 . C T, . . BaseQRankSum=3.40;DP=140;ExcessHet=3.01;MQRankSum=0.515;RAW_MQandDP=496779,140;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL:SB ./.:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 ./.:0,42,0:42:99:1307,125,0,1307,125,1307:0,0,16,26 +20 10088064 . G . . END=10088077 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:46:99:44:0,111,1444 +20 10088078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:44:98:44:0,98,1353 +20 10088079 . C . . END=10088116 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:38:99:34:0,99,1085 +20 10088117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:36:80:36:0,80,1094 +20 10088118 . A . . END=10088309 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:46:99:38:0,102,1194 +20 10088310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:92:42:0,92,1224 +20 10088311 . A . . END=10088337 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:39:0,102,1056 +20 10088338 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:38:97:38:0,97,1102 +20 10088339 . A . . END=10088358 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:99:36:0,99,1019 +20 10088359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:37:98:37:0,98,1093 +20 10088360 . A . . END=10088381 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:41:99:35:0,99,1092 +20 10088382 . A . . END=10088396 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:33:0,90,1061 +20 10088397 . A . . END=10088402 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:82:33:0,82,1012 +20 10088403 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:65:33:0,65,1001 +20 10088404 . A . . END=10088406 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:81:31:0,81,1215 +20 10088407 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:77:32:0,77,950 +20 10088408 . C . . END=10088410 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:31:0,81,1215 +20 10088411 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:78:30:0,78,934 +20 10088412 . A . . END=10088417 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:84:28:0,84,862 +20 10088418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:57:30:0,57,865 +20 10088419 . A . . END=10088423 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:81:29:0,81,909 +20 10088424 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:78:30:0,78,886 +20 10088425 . C . . END=10088427 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:31:0,81,1215 +20 10088428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:78:31:0,78,968 +20 10088429 . A . . END=10088431 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:30:0,81,1215 +20 10088432 . A . . END=10088434 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:78:29:0,78,1170 +20 10088435 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:28:67:28:0,67,772 +20 10088436 . T . . END=10088444 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:29:0,81,1215 +20 10088445 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:58:30:0,58,860 +20 10088446 . A . . END=10088450 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:81:29:0,81,942 +20 10088451 . A . . END=10088458 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:90:31:0,90,946 +20 10088459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:80:32:0,80,962 +20 10088460 . A . . END=10088464 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:93:32:0,93,1395 +20 10088465 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:87:32:0,87,1305 +20 10088466 . A . . END=10088469 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:90:32:0,90,1350 +20 10088470 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:79:33:0,79,1007 +20 10088471 . C . . END=10088472 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:34:0,93,1395 +20 10088473 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:88:35:0,88,1036 +20 10088474 . G . . END=10088479 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:31:0,93,1008 +20 10088480 . T . . END=10088481 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088482 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:96:34:0,96,1440 +20 10088483 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:85:33:0,85,940 +20 10088484 . T . . END=10088485 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:96:32:0,96,1075 +20 10088486 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088487 . A . . END=10088491 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10088492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:84:34:0,84,952 +20 10088493 . A . . END=10088497 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:34:0,90,1350 +20 10088498 . T . . END=10088502 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:82:30:0,82,930 +20 10088503 . A . . END=10088504 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:90:32:0,90,992 +20 10088505 . T . . END=10088507 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:34:0,99,1485 +20 10088508 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:77:35:0,77,1052 +20 10088509 . T . . END=10088511 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:34:0,93,1395 +20 10088512 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:87:34:0,87,1054 +20 10088513 . A . . END=10088517 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10088518 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:82:33:0,82,966 +20 10088519 . A . . END=10088533 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:90:31:0,90,955 +20 10088534 . G . . END=10088535 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088536 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:87:34:0,87,980 +20 10088537 . C . . END=10088541 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:34:0,102,1061 +20 10088542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:96:32:0,96,1032 +20 10088543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:99:33:0,99,980 +20 10088544 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:86:34:0,86,938 +20 10088545 . T . . END=10088546 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10088547 . G . . END=10088549 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:35:0,90,1350 +20 10088550 . A . . END=10088598 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:99:37:0,99,1157 +20 10088599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:87:40:0,87,1113 +20 10088600 . C . . END=10088601 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:41:0,120,1800 +20 10088602 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:41:96:41:0,96,1135 +20 10088603 . A . . END=10088605 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:41:0,120,1800 +20 10088606 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:92:40:0,92,1165 +20 10088607 . G . . END=10088647 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:43:99:42:0,99,1120 +20 10088648 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:44:82:44:0,82,1206 +20 10088649 . C . . END=10088698 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:51:99:45:0,117,1316 +20 10088699 . C T, . . BaseQRankSum=3.80;DP=113;ExcessHet=3.01;MQRankSum=-3.140e+00;RAW_MQandDP=378442,113;ReadPosRankSum=-1.456e+00 GT:AD:DP:GQ:PL:SB ./.:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 ./.:0,45,0:45:99:1405,135,0,1405,135,1405:0,0,24,21 +20 10088700 . G . . END=10088718 GT:DP:GQ:MIN_DP:PL ./.:53:99:51:0,120,1800 ./.:46:99:44:0,99,1303 +20 10088719 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:51:0,120,1800 ./.:44:78:44:0,78,1193 +20 10088720 . C . . END=10088729 GT:DP:GQ:MIN_DP:PL ./.:53:99:51:0,120,1800 ./.:44:99:43:0,100,1277 +20 10088730 . G A, . . BaseQRankSum=0.224;DP=94;ExcessHet=3.01;MQRankSum=-4.839e+00;RAW_MQandDP=298262,94;ReadPosRankSum=0.581 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 ./.:0,41,0:41:99:0|1:10088730_G_A:1825,123,0,1825,123,1825:0,0,23,18 +20 10088731 . G . . END=10088735 GT:DP:GQ:MIN_DP:PL ./.:55:99:55:0,120,1800 ./.:43:99:42:0,108,1292 +20 10088736 . A C, . . BaseQRankSum=0.282;DP=99;ExcessHet=3.01;MQRankSum=-5.169e+00;RAW_MQandDP=306786,99;ReadPosRankSum=0.573 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 ./.:0,43,0:43:99:0|1:10088730_G_A:1999,138,0,1999,138,1999:0,0,23,20 +20 10088737 . C . . END=10088746 GT:DP:GQ:MIN_DP:PL ./.:56:99:53:0,120,1800 ./.:46:99:45:0,120,1800 +20 10088747 . A G, . . BaseQRankSum=-3.877e+00;DP=103;ExcessHet=3.01;MQRankSum=-4.907e+00;RAW_MQandDP=317743,103;ReadPosRankSum=9.000e-03 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 ./.:0,47,0:47:99:0|1:10088730_G_A:2038,144,0,2038,144,2038:0,0,25,22 +20 10088748 . G . . END=10088780 GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:45:99:42:0,112,1329 +20 10088781 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:41:92:41:0,92,1212 +20 10088782 . T . . END=10088797 GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:41:99:39:0,99,1485 +20 10088798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:46:0,114,1710 ./.:40:96:40:0,96,1440 +20 10088799 . G A, . . BaseQRankSum=5.50;DP=94;ExcessHet=3.01;MQRankSum=-2.498e+00;RAW_MQandDP=296344,94;ReadPosRankSum=1.08 GT:AD:DP:GQ:PL:SB ./.:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 ./.:0,40,0:40:99:1320,120,0,1320,120,1320:0,0,20,20 +20 10088800 . T . . END=10088802 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:39:93:39:0,93,1395 +20 10088803 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:41:99:41:0,99,1485 +20 10088804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:39:96:39:0,96,1440 +20 10088805 . A . . END=10088807 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:39:99:39:0,99,1485 +20 10088808 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:38:96:38:0,96,1440 +20 10088809 . A . . END=10088812 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:38:99:37:0,99,1485 +20 10088813 . T . . END=10088815 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:37:96:37:0,96,1440 +20 10088816 . A . . END=10088819 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:38:99:35:0,99,1485 +20 10088820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:35:96:35:0,96,1440 +20 10088821 . A . . END=10088831 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,113,1800 ./.:37:99:34:0,99,1043 +20 10088832 . G . . END=10088842 GT:DP:GQ:MIN_DP:PL ./.:53:63:36:0,63,945 ./.:37:99:34:0,99,1043 +20 10088843 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:16:25:0,16,759 ./.:37:99:34:0,99,1043 +20 10088844 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:37:25:0,37,718 ./.:37:99:34:0,99,1043 +20 10088845 . C . . . GT:DP:GQ:MIN_DP:PL ./.:26:38:26:0,38,870 ./.:37:99:34:0,99,1043 +20 10088846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:60:25:0,60,900 ./.:37:99:34:0,99,1043 +20 10088847 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:51:25:0,51,870 ./.:37:99:34:0,99,1043 +20 10088848 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:63:25:0,63,945 ./.:37:99:34:0,99,1043 +20 10088849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:54:25:0,54,810 ./.:37:99:34:0,99,1043 +20 10088850 . A . . END=10088851 GT:DP:GQ:MIN_DP:PL ./.:26:57:26:0,57,855 ./.:37:99:34:0,99,1043 +20 10088852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:48:25:0,48,720 ./.:37:99:34:0,99,1043 +20 10088853 . C . . END=10088854 GT:DP:GQ:MIN_DP:PL ./.:26:51:26:0,51,765 ./.:37:99:34:0,99,1043 +20 10088855 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:25:0,57,855 ./.:37:99:34:0,99,1043 +20 10088856 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:25:0,57,855 ./.:34:96:33:0,96,1440 +20 10088857 . G . . END=10088860 GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:96:33:0,96,1440 +20 10088861 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:35:87:35:0,87,991 +20 10088862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:74:34:0,74,991 +20 10088863 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:96:34:0,96,1440 +20 10088864 . G . . END=10088865 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:35:99:33:0,99,990 +20 10088866 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:35:99:33:0,99,990 +20 10088867 . A . . END=10088870 GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:35:99:33:0,99,990 +20 10088871 . T . . END=10088875 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:35:99:33:0,99,990 +20 10088876 . C . . END=10088883 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:36:90:35:0,90,1053 +20 10088884 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:35:78:35:0,78,983 +20 10088885 . G . . END=10088887 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:34:81:31:0,81,886 +20 10088888 . G . . END=10088889 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:90:31:0,90,1350 +20 10088890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:31:87:31:0,87,1305 +20 10088891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:90:32:0,90,1350 +20 10088892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:87:32:0,87,1305 +20 10088893 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:33:90:33:0,90,1350 +20 10088894 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:33:87:33:0,87,1305 +20 10088895 . C T, . . BaseQRankSum=2.46;DP=74;ExcessHet=3.01;MQRankSum=0.577;RAW_MQandDP=251171,74;ReadPosRankSum=1.30 GT:AD:DP:GQ:PL:SB ./.:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 ./.:0,31,0:31:92:932,92,0,932,92,932:0,0,18,13 +20 10088896 . G . . END=10088903 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:33:80:29:0,80,790 +20 10088904 . G . . END=10088905 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:31:90:31:0,90,1350 +20 10088906 . G . . END=10088910 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:30:84:28:0,84,866 +20 10088911 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:31:60:31:0,60,858 +20 10088912 . A . . END=10088916 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:32:84:30:0,84,1260 +20 10088917 . G . . END=10088928 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:34:72:32:0,72,1080 +20 10088929 . C . . END=10088937 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:66:35:0,66,990 +20 10088938 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:57:39:0,57,1004 +20 10088939 . C . . END=10088940 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:60:40:0,60,900 +20 10088941 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:57:39:0,57,855 +20 10088942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:38:54:38:0,54,810 +20 10088943 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:51:39:0,51,765 +20 10088944 . C . . END=10088947 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:48:38:0,48,720 +20 10088948 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:42:39:42:0,39,585 +20 10088949 . T . . END=10088952 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:36:39:0,36,540 +20 10088953 . T . . END=10088956 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:43:39:42:0,39,585 +20 10088957 . C . . END=10088959 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:33:39:0,33,495 +20 10088960 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:39:30:39:0,30,450 +20 10088961 . A . . END=10088963 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:40:27:38:0,27,405 +20 10088964 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:37:30:37:0,30,450 +20 10088965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:41:27:41:0,27,405 +20 10088966 . C . . END=10088967 GT:DP:GQ:MIN_DP:PL ./.:49:99:42:0,110,1709 ./.:42:0:41:0,0,683 +20 10088968 . C CAAA, . . BaseQRankSum=0.552;DP=95;ExcessHet=3.01;MQRankSum=-4.750e+00;RAW_MQandDP=292450,95;ReadPosRankSum=2.42 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 ./.:0,30,0:30:99:0|1:10088968_C_CAAA:1781,128,0,1781,128,1781:0,0,18,12 +20 10088969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:70:0,120,1800 ./.:53:0:53:0,0,0 +20 10088970 . A . . END=10088979 GT:DP:GQ:MIN_DP:PL ./.:71:99:70:0,120,1800 ./.:54:99:53:0,120,1800 +20 10088980 . T C, . . BaseQRankSum=-1.585e+00;DP=113;ExcessHet=3.01;MQRankSum=-5.232e+00;RAW_MQandDP=332195,113;ReadPosRankSum=1.29 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 ./.:0,44,0:44:99:0|1:10088968_C_CAAA:1859,135,0,1859,135,1859:0,0,18,26 +20 10088981 . A . . END=10088982 GT:DP:GQ:MIN_DP:PL ./.:71:99:69:0,120,1800 ./.:54:99:54:0,120,1800 +20 10088983 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:69:0,120,1800 ./.:51:43:51:0,43,1358 +20 10088984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:69:0,120,1800 ./.:53:99:53:0,120,1800 +20 10088985 . T C, . . BaseQRankSum=-1.920e-01;DP=118;ExcessHet=3.01;MQRankSum=-5.248e+00;RAW_MQandDP=346085,118;ReadPosRankSum=1.23 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 ./.:0,43,0:43:99:.:.:1926,132,0,1926,132,1926:0,0,18,25 +20 10088986 . A . . END=10088989 GT:DP:GQ:MIN_DP:PL ./.:82:99:81:0,120,1800 ./.:52:99:49:0,110,1473 +20 10088990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:7:84:0,7,2771 ./.:52:99:49:0,110,1473 +20 10088991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:95:81:0,95,2703 ./.:52:99:49:0,110,1473 +20 10088992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:88:80:0,88,2845 ./.:52:99:49:0,110,1473 +20 10088993 . A . . END=10089025 GT:DP:GQ:MIN_DP:PL ./.:84:99:76:0,112,1800 ./.:52:99:49:0,110,1473 +20 10089026 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:0:74:0,0,2116 ./.:52:99:49:0,110,1473 +20 10089027 . A . . END=10089029 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,120,1800 ./.:52:99:49:0,110,1473 +20 10089030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:83:76:0,83,2254 ./.:51:89:51:0,89,1483 +20 10089031 . A . . END=10089036 GT:DP:GQ:MIN_DP:PL ./.:83:99:78:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089037 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:40:82:0,40,2255 ./.:50:99:46:0,103,1428 +20 10089038 . A . . END=10089042 GT:DP:GQ:MIN_DP:PL ./.:83:99:81:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:79:76:0,79,2231 ./.:50:99:46:0,103,1428 +20 10089044 . G . . END=10089074 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:45:88:45:0,88,1279 +20 10089076 . C . . END=10089147 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:99:41:0,101,1310 +20 10089148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:41:91:41:0,91,1207 +20 10089149 . A G, . . BaseQRankSum=1.75;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-4.740e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:82:99:74:0,120,1800,120,1800,1800 ./.:1,39,0:40:99:.:1137,108,0,1140,115,1147:0,1,24,15 +20 10089150 . A . . END=10089162 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:39:99:36:0,108,1146 +20 10089163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:42:93:42:0,93,1173 +20 10089164 . A . . END=10089180 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:99:41:0,120,1800 +20 10089181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:98:44:0,98,1273 +20 10089182 . A . . END=10089440 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:48:99:38:0,102,1104 +20 10089441 . A G, . . BaseQRankSum=-4.885e+00;DP=114;ExcessHet=3.01;MQRankSum=-9.480e-01;RAW_MQandDP=270841,76;ReadPosRankSum=-1.560e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,39,0:76:99:.:1208,0,1313,1319,1430,2749:19,18,14,25 ./.:.:48:99:38:0,102,1104,102,1104,1104 +20 10089442 . G . . END=10089524 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:48:99:38:0,102,1104 +20 10089525 . C T, . . BaseQRankSum=5.86;DP=124;ExcessHet=3.01;MQRankSum=1.53;RAW_MQandDP=441410,124;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL:SB ./.:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 ./.:0,43,0:43:99:1352,128,0,1352,128,1352:0,0,18,25 +20 10089526 . G . . END=10089650 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:49:99:46:0,103,1431 +20 10089651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:46:94:46:0,94,1299 +20 10089652 . A . . END=10089694 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:99:40:0,99,1155 +20 10089695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:97:42:0,97,1247 +20 10089696 . G . . END=10089703 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:99:42:0,110,1230 +20 10089704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:91:43:0,91,1197 +20 10089705 . T . . END=10089752 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:37:0,99,1077 +20 10089753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:97:42:0,97,1168 +20 10089754 . C . . END=10089820 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:47:99:41:0,99,1068 +20 10089821 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:45:87:45:0,87,1261 +20 10089822 . C . . END=10089861 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:44:99:42:0,111,1258 +20 10089862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:95:41:0,95,1201 +20 10089863 . A . . END=10089881 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:40:99:35:0,105,1111 +20 10089882 . G . . END=10089883 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:97:38:0,97,1100 +20 10089884 . T . . END=10089928 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:99:37:0,99,1147 +20 10089929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:37:95:37:0,95,1123 +20 10089930 . T . . END=10089932 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:99:37:0,108,1173 +20 10089933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:96:36:0,96,1104 +20 10089934 . G . . END=10089940 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:37:99:36:0,108,1099 +20 10089941 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:95:38:0,95,1057 +20 10089942 . A . . END=10089952 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:38:99:37:0,99,1485 +20 10089953 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:37:94:37:0,94,1095 +20 10089954 . A . . END=10089960 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:99:35:0,102,1530 +20 10089961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:35:94:35:0,94,1045 +20 10089962 . A . . END=10089975 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:35:99:35:0,99,1485 +20 10089976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:35:94:35:0,94,1033 +20 10089977 . C . . END=10089980 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:99:36:0,105,1124 +20 10089981 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:95:36:0,95,1107 +20 10089982 . G . . END=10089984 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:99:37:0,108,1620 +20 10089985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:91:41:0,91,1281 +20 10089986 . G . . END=10089994 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:41:0,100,1213 +20 10089995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:78:41:0,78,1122 +20 10089996 . G . . END=10090025 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:39:0,105,1276 +20 10090026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:88:39:0,88,1146 +20 10090027 . A . . END=10090044 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:99:35:0,105,1095 +20 10090045 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:36:96:36:0,96,1105 +20 10090046 . A . . END=10090060 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:41:99:38:0,105,1145 +20 10090061 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:40:86:40:0,86,1180 +20 10090062 . A . . END=10090243 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:54:99:38:0,101,1290 +20 10090244 . A . . END=10090246 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:48:93:47:0,93,1395 +20 10090247 . T . . END=10090256 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:46:81:40:0,81,1215 +20 10090257 . T . . END=10090259 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:44:72:44:0,72,1080 +20 10090260 . A . . END=10090266 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:45:60:43:0,60,900 +20 10090267 . A . . END=10090268 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:57:42:0,57,855 +20 10090269 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:54:43:0,54,810 +20 10090270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:51:43:0,51,765 +20 10090271 . G . . END=10090272 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:48:42:0,48,720 +20 10090273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:45:42:0,45,675 +20 10090274 . A . . END=10090275 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:33:42:0,33,495 +20 10090276 . A . . END=10090279 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:30:41:0,30,450 +20 10090280 . T . . END=10090281 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:42:27:40:0,27,405 +20 10090282 . A . . END=10090283 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:24:42:0,24,360 +20 10090284 . A . . END=10090285 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:43:15:42:0,15,225 +20 10090286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:12:39:0,12,180 +20 10090287 . G . . END=10090288 GT:DP:GQ:MIN_DP:PL ./.:72:99:55:0,111,1800 ./.:39:9:38:0,9,135 +20 10090289 . CAA C,CA, . . BaseQRankSum=0.441;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=1.39;RAW_MQandDP=424482,118;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL:SB ./.:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 ./.:1,29,0,0:30:66:1009,66,0,1012,88,1033,1012,88,1033,1033:0,1,12,17 +20 10090290 . A *, . . DP=118 GT:AD:DP:GQ:PL:SB ./.:14,20,0:38:99:422,0,230,477,348,928:7,7,11,13 ./.:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090291 . A *, . . DP=118 GT:AD:DP:GQ:PL:SB ./.:14,20,0:38:99:422,0,230,477,348,928:7,7,11,13 ./.:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:0:41:0,0,0 +20 10090293 . A . . END=10090297 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:41:0,102,1530 +20 10090298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:86:42:0,86,1250 +20 10090299 . A . . END=10090303 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:99:42:0,105,1250 +20 10090304 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:86:43:0,86,1261 +20 10090305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:96:43:0,96,1291 +20 10090306 . G . . END=10090307 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:81:41:0,81,1190 +20 10090308 . A . . END=10090465 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:51:99:41:0,99,1273 +20 10090466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:95:42:0,95,1329 +20 10090467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:86:43:0,86,1291 +20 10090468 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:97:43:0,97,1349 +20 10090469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:45:99:45:0,101,1379 +20 10090470 . G . . END=10090471 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:92:42:0,92,1230 +20 10090472 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:41:0,117,1755 +20 10090473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:93:42:0,93,1309 +20 10090474 . G . . END=10090475 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:86:40:0,86,1194 +20 10090476 . C . . END=10090477 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:99:38:0,100,1148 +20 10090478 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:86:40:0,86,1182 +20 10090479 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:75:40:0,75,1155 +20 10090480 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,102,1530 +20 10090481 . T . . END=10090482 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:91:41:0,91,1237 +20 10090483 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:88:41:0,88,1228 +20 10090484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,102,1530 +20 10090485 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:88:40:0,88,1247 +20 10090486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:73:36:0,73,1070 +20 10090487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:82:39:0,82,1145 +20 10090488 . C . . END=10090490 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:99:36:0,99,1485 +20 10090491 . G . . END=10090492 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:70:35:0,70,965 +20 10090493 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:34:67:34:0,67,1006 +20 10090494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:99:35:0,99,1485 +20 10090495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:71:35:0,71,1080 +20 10090496 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:56:35:0,56,1025 +20 10090497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:34:67:34:0,67,1022 +20 10090498 . C . . END=10090500 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:37:99:36:0,105,1575 +20 10090501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:79:38:0,79,1173 +20 10090502 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:99:38:0,108,1620 +20 10090503 . T . . END=10090505 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:76:37:0,76,1119 +20 10090506 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:37:80:37:0,80,1107 +20 10090507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:74:36:0,74,1071 +20 10090508 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:82:39:0,82,1160 +20 10090509 . C . . END=10090510 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:99:38:0,105,1575 +20 10090511 . A . . END=10090513 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:81:39:0,81,1156 +20 10090514 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:79:38:0,79,1175 +20 10090515 . C . . END=10090516 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:39:0,111,1665 +20 10090517 . A . . END=10090524 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:80:38:0,80,1130 +20 10090525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:55:42:0,55,1127 +20 10090526 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:89:43:0,89,1263 +20 10090527 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:95:43:0,95,1298 +20 10090528 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:77:42:0,77,1199 +20 10090529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:92:42:0,92,1248 +20 10090530 . C . . END=10090532 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:99:42:0,114,1710 +20 10090533 . A . . END=10090535 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:94:43:0,94,1291 +20 10090536 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:89:41:0,89,1245 +20 10090537 . C . . END=10090539 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:39:0,100,1317 +20 10090540 . A . . END=10090541 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:91:41:0,91,1185 +20 10090542 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:86:44:0,86,1243 +20 10090543 . C . . END=10090547 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,105,1575 +20 10090548 . G . . END=10090549 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:93:39:0,93,1135 +20 10090550 . A . . END=10090557 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:37:0,100,1131 +20 10090558 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:86:39:0,86,1099 +20 10090559 . C . . END=10090592 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:38:0,106,1142 +20 10090593 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:97:40:0,97,1225 +20 10090594 . C . . END=10090763 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:51:99:38:0,100,1169 +20 10090764 . A G, . . BaseQRankSum=-2.659e+00;DP=109;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=392400,109;ReadPosRankSum=1.21 GT:AD:DP:GQ:PL:SB ./.:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 ./.:0,45,0:45:99:1187,133,0,1187,133,1187:0,0,25,20 +20 10090765 . A . . END=10090885 GT:DP:GQ:MIN_DP:PL ./.:75:99:65:0,120,1800 ./.:52:99:45:0,116,1415 +20 10090886 . G A, . . BaseQRankSum=1.03;ClippingRankSum=0.00;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=201600,56;ReadPosRankSum=1.79 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:99:65:0,120,1800,120,1800,1800 ./.:5,51,0:56:48:.:1467,48,0,1481,152,1585:2,3,27,24 +20 10090887 . A . . END=10090969 GT:DP:GQ:MIN_DP:PL ./.:75:99:65:0,120,1800 ./.:53:99:44:0,113,1448 +20 10090970 . T C, . . BaseQRankSum=-4.840e-01;DP=113;ExcessHet=3.01;MQRankSum=1.51;RAW_MQandDP=243938,69;ReadPosRankSum=-7.200e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,36,0:69:99:.:1286,0,1092,1384,1201,2585:20,13,20,16 ./.:.:53:99:44:0,113,1448,113,1448,1448 +20 10090971 . C . . END=10091213 GT:DP:GQ:MIN_DP:PL ./.:61:99:49:0,120,1800 ./.:53:99:44:0,113,1448 +20 10091214 . C T, . . BaseQRankSum=0.361;DP=114;ExcessHet=3.01;MQRankSum=-9.160e-01;RAW_MQandDP=249769,70;ReadPosRankSum=-3.500e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,37,0:70:99:.:1278,0,1110,1377,1222,2599:11,22,13,24 ./.:.:53:99:44:0,113,1448,113,1448,1448 +20 10091215 . C . . END=10091219 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:53:99:44:0,113,1448 +20 10091220 . A G, . . DP=91;ExcessHet=3.01;RAW_MQandDP=162000,45 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:69:99:46:0,120,1800,120,1800,1800 ./.:0,44,0:44:99:.:1235,130,0,1235,130,1235:0,0,20,24 +20 10091221 . T . . END=10091324 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:99:43:0,101,1302 +20 10091325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:89:43:0,89,1252 +20 10091326 . G . . END=10091363 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1114 +20 10091364 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:87:40:0,87,1215 +20 10091365 . G . . END=10091537 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:99:38:0,105,1111 +20 10091538 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:92:40:0,92,1048 +20 10091539 . C . . END=10091564 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,99,1173 +20 10091565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:78:39:0,78,1132 +20 10091566 . G . . END=10091585 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,108,1620 +20 10091586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:97:39:0,97,1147 +20 10091587 . A . . END=10091617 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1141 +20 10091618 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:94:37:0,94,1159 +20 10091619 . C . . END=10091624 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,105,1163 +20 10091625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:98:38:0,98,1183 +20 10091626 . T . . END=10091662 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1188 +20 10091663 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:80:38:0,80,1111 +20 10091664 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:41:0,117,1755 +20 10091665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:90:41:0,90,1210 +20 10091666 . A . . END=10091744 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:35:0,105,1152 +20 10091745 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:79:35:0,79,1053 +20 10091746 . G . . END=10091797 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:42:99:33:0,99,1031 +20 10091798 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:85:40:0,85,1196 +20 10091799 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:40:0,114,1710 +20 10091800 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:97:40:0,97,1237 +20 10091801 . A . . END=10091820 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:39:0,105,1180 +20 10091821 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1242 +20 10091822 . A . . END=10091835 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,99,1485 +20 10091836 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1175 +20 10091837 . T . . END=10091838 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:38:0,99,1485 +20 10091839 . A . . END=10091843 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:93:37:0,93,1111 +20 10091844 . A . . END=10091861 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:36:99:34:0,99,1028 +20 10091862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:36:94:36:0,94,1028 +20 10091863 . C . . END=10091868 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,105,1138 +20 10091869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:97:38:0,97,1074 +20 10091870 . C . . END=10091907 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:99:40:0,99,1221 +20 10091908 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:98:47:0,98,1355 +20 10091909 . T . . END=10091931 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:41:0,103,1263 +20 10091932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:42:81:42:0,81,1185 +20 10091933 . T . . END=10092027 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:40:0,114,1239 +20 10092028 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:97:41:0,97,1239 +20 10092029 . C . . END=10092101 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:41:0,102,1213 +20 10092102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:83:47:0,83,1345 +20 10092103 . G . . END=10092130 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:40:0,108,1288 +20 10092131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1128 +20 10092132 . C . . END=10092160 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:37:0,100,1126 +20 10092161 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:89:41:0,89,1165 +20 10092162 . G . . END=10092165 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:39:0,108,1195 +20 10092166 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:91:40:0,91,1151 +20 10092167 . T . . END=10092179 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,101,1084 +20 10092180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:89:40:0,89,1148 +20 10092181 . T . . END=10092194 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:34:0,99,1485 +20 10092195 . T . . END=10092196 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:96:36:0,96,1440 +20 10092197 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:38:0,99,1485 +20 10092198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:90:37:0,90,1072 +20 10092199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:37:0,99,1485 +20 10092200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:90:37:0,90,1063 +20 10092201 . C . . END=10092202 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10092203 . C . . END=10092209 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:34:96:32:0,96,983 +20 10092210 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10092211 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10092212 . A . . END=10092216 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:37:0,103,1087 +20 10092217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:88:38:0,88,1143 +20 10092218 . T . . END=10092238 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:37:0,99,1113 +20 10092239 . A . . END=10092241 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:96:38:0,96,1440 +20 10092242 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:77:39:0,77,1093 +20 10092243 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:96:39:0,96,1440 +20 10092244 . C . . END=10092247 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:39:0,105,1157 +20 10092248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:98:39:0,98,1127 +20 10092249 . A . . END=10092260 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:36:0,103,1121 +20 10092261 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:94:39:0,94,1166 +20 10092262 . A . . END=10092288 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:38:0,102,1110 +20 10092289 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:97:43:0,97,1263 +20 10092290 . T . . END=10092414 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:54:99:39:0,108,1239 +20 10092415 . A G, . . BaseQRankSum=-6.731e+00;DP=140;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=363600,101;ReadPosRankSum=0.082 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:52,49,0:101:99:.:1664,0,1902,1820,2049,3870:27,25,24,25 ./.:.:54:99:39:0,108,1239,108,1239,1239 +20 10092416 . G . . END=10092641 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:54:99:39:0,108,1239 +20 10092642 . T C, . . DP=111;ExcessHet=3.01;RAW_MQandDP=183600,51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:60:0,120,1800,120,1800,1800 ./.:0,51,0:51:99:.:1428,151,0,1428,151,1428:0,0,26,25 +20 10092643 . G . . END=10092926 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:57:99:40:0,108,1608 +20 10092927 . G T, . . BaseQRankSum=-2.507e+00;DP=113;ExcessHet=3.01;MQRankSum=-3.009e+00;RAW_MQandDP=257282,73;ReadPosRankSum=-2.200e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:59,13,0:72:99:.:135,0,1864,310,1901,2211:43,16,0,13 ./.:.:57:99:40:0,108,1608,108,1608,1608 +20 10092928 . T . . END=10093049 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:57:99:40:0,108,1608 +20 10093050 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:91:40:0,91,1217 +20 10093051 . C . . END=10093108 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:99:35:0,99,1143 +20 10093109 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:79:35:0,79,1099 +20 10093110 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:99:35:0,102,1530 +20 10093111 . T . . END=10093123 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:90:32:0,90,1075 +20 10093124 . C . . END=10093125 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:32:87:32:0,87,1305 +20 10093126 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:33:90:33:0,90,1350 +20 10093127 . A . . END=10093128 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:33:84:33:0,84,1260 +20 10093129 . T . . END=10093132 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:90:34:0,90,1079 +20 10093133 . T . . END=10093138 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:36:99:34:0,99,1485 +20 10093139 . A . . END=10093144 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:35:93:34:0,93,1395 +20 10093145 . A . . END=10093229 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:43:99:37:0,99,1099 +20 10093230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:45:86:45:0,86,1332 +20 10093231 . C . . END=10093530 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:49:99:41:0,102,1306 +20 10093531 . C . . END=10093535 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:42:90:40:0,90,1350 +20 10093536 . C . . END=10093538 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:41:81:41:0,81,1215 +20 10093539 . A . . END=10093542 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:72:39:0,72,1080 +20 10093543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:41:66:41:0,66,990 +20 10093544 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:38:57:38:0,57,855 +20 10093545 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:40:48:40:0,48,720 +20 10093546 . A . . END=10093547 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:39:45:38:0,45,675 +20 10093548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:39:48:39:0,48,720 +20 10093549 . A . . END=10093550 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:38:45:37:0,45,675 +20 10093551 . G . . END=10093552 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:39:39:38:0,39,585 +20 10093553 . G . . END=10093557 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:24:37:0,24,360 +20 10093558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:21:37:0,21,315 +20 10093559 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:18:37:0,18,270 +20 10093560 . T . . END=10093562 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:15:36:0,15,225 +20 10093563 . G . . END=10093565 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:18:37:0,18,270 +20 10093566 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:38:12:38:0,12,180 +20 10093567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,120,1800 ./.:37:9:37:0,9,135 +20 10093568 . GTT G,GT,GTTT,GTTTT, . . BaseQRankSum=0.426;DP=87;ExcessHet=3.01;MQRankSum=0.410;RAW_MQandDP=305661,87;ReadPosRankSum=1.26 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:17,4,17,4,0,0:42:99:.:.:364,329,1122,0,430,386,377,710,293,909,431,838,449,780,885,431,838,449,780,885,885:7,10,10,15 ./.:0,0,0,0,24,0:24:75:0|1:10093568_G_GTT:894,894,894,894,894,894,894,894,894,894,75,75,75,75,0,894,894,894,894,75,894:0,0,14,10 +20 10093569 . T *, . . DP=96 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:17,17,0:42:99:.:364,0,386,431,449,885:7,10,10,15 ./.:.:37:0:37:0,0,0,0,0,0 +20 10093570 . T *, . . DP=96 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:17,17,0:42:99:.:364,0,386,431,449,885:7,10,10,15 ./.:.:37:87:37:0,87,1305,87,1305,1305 +20 10093571 . T . . END=10093573 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:87:37:0,87,1305 +20 10093574 . T . . END=10093579 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:72:34:0,72,1080 +20 10093580 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:54:34:0,54,993 +20 10093581 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:33:14:33:0,14,864 +20 10093582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:33:47:33:0,47,848 +20 10093583 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:40:34:0,40,920 +20 10093584 . T G, . . BaseQRankSum=-2.073e+00;ClippingRankSum=0.00;DP=75;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=86400,24;ReadPosRankSum=1.05 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:62:99:51:.:.:0,99,1485,99,1485,1485 ./.:20,4,0:24:2:.:0|1:10093568_G_GTT:2,0,468,60,479,540:8,12,4,0 +20 10093585 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:72:35:0,72,1042 +20 10093586 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:84:32:0,84,1260 +20 10093587 . G . . END=10093589 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:75:30:0,75,904 +20 10093590 . T . . END=10093591 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:83:33:0,83,818 +20 10093592 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:57:31:0,57,762 +20 10093593 . T . . END=10093595 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:87:32:0,87,1305 +20 10093596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:30:56:30:0,56,745 +20 10093597 . T . . END=10093599 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:84:32:0,84,1260 +20 10093600 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:90:34:0,90,1350 +20 10093601 . G . . END=10093602 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:82:33:0,82,927 +20 10093603 . T . . END=10093605 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:93:37:0,93,1395 +20 10093606 . G . . END=10093610 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:84:34:0,84,884 +20 10093611 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:51:37:0,51,947 +20 10093612 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:39:84:39:0,84,1260 +20 10093613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:50:31:0,50,780 +20 10093614 . T . . END=10093623 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:81:30:0,81,1215 +20 10093624 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:90:32:0,90,1350 +20 10093625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:79:32:0,79,941 +20 10093626 . G . . END=10093627 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:96:34:0,96,1440 +20 10093628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:99:34:0,99,1485 +20 10093629 . T . . END=10093631 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:96:34:0,96,1071 +20 10093632 . C . . END=10093655 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:99:36:0,102,1110 +20 10093656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:95:37:0,95,1117 +20 10093657 . G . . END=10093744 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:45:99:35:0,103,1102 +20 10093745 . C . . END=10093746 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:42:96:42:0,96,1440 +20 10093747 . C . . END=10093748 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:41:99:39:0,99,1485 +20 10093749 . C . . END=10093751 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:41:96:39:0,96,1440 +20 10093752 . C . . END=10093753 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:40:99:39:0,102,1530 +20 10093754 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:96:38:0,96,1440 +20 10093755 . C . . END=10093829 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:47:99:38:0,102,1359 +20 10093830 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:42:93:42:0,93,1160 +20 10093831 . T . . END=10093839 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:44:99:42:0,115,1238 +20 10093840 . A . . END=10093841 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:45:95:45:0,95,1260 +20 10093842 . T . . END=10093915 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:47:99:38:0,101,1151 +20 10093916 . A . . END=10093917 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:90:36:0,90,1050 +20 10093918 . A . . END=10093919 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:99:38:0,102,1530 +20 10093920 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:83:37:0,83,1060 +20 10093921 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:99:37:0,102,1530 +20 10093922 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:39:91:37:0,91,1230 +20 10093923 . T A, . . BaseQRankSum=-6.670e-01;DP=104;ExcessHet=3.01;MQRankSum=0.358;RAW_MQandDP=234704,67;ReadPosRankSum=-1.583e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,32,0:67:99:.:1104,0,1257,1209,1353,2563:18,17,15,17 ./.:.:39:91:37:0,91,1230,91,1230,1230 +20 10093924 . G . . END=10093925 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:40:0,99,1485 +20 10093926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:39:96:39:0,96,1440 +20 10093927 . C . . END=10093930 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10093931 . C . . END=10093932 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:96:36:0,96,1440 +20 10093933 . T . . END=10093934 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10093935 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:56:35:0,56,936 +20 10093936 . A . . END=10093938 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:93:34:0,93,1395 +20 10093939 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:87:34:0,87,1019 +20 10093940 . T . . END=10093947 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:93:32:0,93,1395 +20 10093948 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:31:62:31:0,62,944 +20 10093949 . T . . END=10093953 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:32:93:31:0,93,1005 +20 10093954 . G . . END=10093970 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:33:0,99,1012 +20 10093971 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:84:40:0,84,1122 +20 10093972 . C . . END=10093975 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:41:99:40:0,111,1665 +20 10093976 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:91:40:0,91,1212 +20 10093977 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:82:42:0,82,1199 +20 10093978 . G . . END=10093982 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,108,1620 +20 10093983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:90:40:0,90,1277 +20 10093984 . G . . END=10093996 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,105,1195 +20 10093997 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:98:40:0,98,1225 +20 10093998 . A . . END=10094041 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:41:99:38:0,104,1218 +20 10094042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:97:38:0,97,1203 +20 10094043 . T . . END=10094054 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:99:36:0,105,1185 +20 10094055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:92:36:0,92,1108 +20 10094056 . T . . END=10094059 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10094060 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:96:37:0,96,1440 +20 10094061 . A . . END=10094066 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:99:38:0,99,1485 +20 10094067 . T . . END=10094072 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:96:34:0,96,1440 +20 10094073 . A . . END=10094079 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:99:34:0,99,1075 +20 10094080 . T . . END=10094082 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:96:34:0,96,1440 +20 10094083 . T . . END=10094084 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:99:35:0,99,1485 +20 10094085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:91:36:0,91,1076 +20 10094086 . T . . END=10094101 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,99,1153 +20 10094102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:76:42:0,76,1168 +20 10094103 . C . . END=10094137 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:44:99:40:0,101,1217 +20 10094138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:92:42:0,92,1249 +20 10094139 . C . . END=10094250 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:49:99:37:0,100,1165 +20 10094251 . T A, . . BaseQRankSum=0.251;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=223200,62;ReadPosRankSum=1.81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:26,36,0:62:99:.:1299,0,781,1376,889,2265:10,16,23,13 ./.:.:49:99:37:0,100,1165,100,1165,1165 +20 10094252 . C . . END=10094403 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:49:99:37:0,100,1165 +20 10094404 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:98:38:0,98,1181 +20 10094405 . A . . END=10094408 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:36:0,100,1117 +20 10094409 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:93:36:0,93,1121 +20 10094410 . A . . END=10094413 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,99,1485 +20 10094414 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:78:36:0,78,1064 +20 10094415 . A . . END=10094419 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,99,1485 +20 10094420 . G . . END=10094422 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:94:35:0,94,1077 +20 10094423 . A . . END=10094429 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:36:0,99,1485 +20 10094430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:82:37:0,82,1102 +20 10094431 . G . . END=10094442 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1485 +20 10094443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:96:35:0,96,1440 +20 10094444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:88:36:0,88,1099 +20 10094445 . A . . END=10094449 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:93:35:0,93,1083 +20 10094450 . A . . END=10094452 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:99:34:0,99,1485 +20 10094453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:74:35:0,74,965 +20 10094454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:99:35:0,99,1485 +20 10094455 . C . . END=10094462 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:90:34:0,90,1088 +20 10094463 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:34:79:34:0,79,1036 +20 10094464 . C . . END=10094466 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:90:35:0,90,1068 +20 10094467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:88:37:0,88,1097 +20 10094468 . A . . END=10094472 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:34:0,99,1485 +20 10094473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:34:91:34:0,91,1013 +20 10094474 . C . . END=10094486 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1485 +20 10094487 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:92:36:0,92,1082 +20 10094488 . T . . END=10094493 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:99:37:0,99,1485 +20 10094494 . C . . END=10094498 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:95:36:0,95,1093 +20 10094499 . C . . END=10094501 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1152 +20 10094502 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:93:36:0,93,1099 +20 10094503 . G . . END=10094505 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,105,1138 +20 10094506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:87:38:0,87,1147 +20 10094507 . G . . END=10094512 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:39:99:38:0,111,1665 +20 10094513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:93:38:0,93,1141 +20 10094514 . C . . END=10094581 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:44:99:37:0,99,1130 +20 10094582 . A G, . . BaseQRankSum=-1.388e+00;DP=106;ExcessHet=3.01;MQRankSum=1.27;RAW_MQandDP=243410,69;ReadPosRankSum=-1.800e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,30,0:69:99:.:952,0,1350,1070,1440,2510:20,19,16,14 ./.:.:44:99:37:0,99,1130,99,1130,1130 +20 10094583 . T . . END=10094760 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:44:99:37:0,99,1130 +20 10094761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:52:93:52:0,93,1450 +20 10094762 . G . . END=10094769 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:53:99:51:0,120,1800 +20 10094770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:53:87:53:0,87,1503 +20 10094771 . A . . END=10094773 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:51:99:49:0,120,1800 +20 10094774 . C T, . . BaseQRankSum=-7.840e-01;DP=124;ExcessHet=3.01;MQRankSum=0.962;RAW_MQandDP=267241,75;ReadPosRankSum=0.197 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,35,0:75:99:.:1065,0,1282,1185,1385,2570:24,16,21,14 ./.:.:49:97:49:0,97,1393,97,1393,1393 +20 10094775 . A . . END=10094792 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:49:99:45:0,120,1800 +20 10094793 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:43:95:43:0,95,1249 +20 10094794 . T . . END=10094898 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:47:99:43:0,114,1358 +20 10094899 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:49:97:49:0,97,1388 +20 10094900 . G . . END=10094973 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:48:99:44:0,104,1371 +20 10094974 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:96:45:0,96,1282 +20 10094975 . A . . END=10094986 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:99:42:0,117,1755 +20 10094987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:97:45:0,97,1265 +20 10094988 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:99:44:0,114,1710 +20 10094989 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:91:44:0,91,1236 +20 10094990 . T . . END=10094994 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:99:42:0,108,1620 +20 10094995 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:42:87:42:0,87,1169 +20 10094996 . C . . END=10095004 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:99:38:0,99,1108 +20 10095005 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:92:41:0,92,1160 +20 10095006 . A . . END=10095069 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:99:35:0,99,1096 +20 10095070 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:93:35:0,93,1066 +20 10095071 . A . . END=10095080 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:35:0,100,1081 +20 10095081 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:77:36:0,77,1108 +20 10095082 . A . . END=10095098 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:34:0,99,1089 +20 10095099 . C . . END=10095101 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:91:35:0,91,1033 +20 10095102 . A . . END=10095117 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:35:0,99,1074 +20 10095118 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:96:37:0,96,1067 +20 10095119 . A . . END=10095121 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:35:0,99,1485 +20 10095122 . T . . END=10095127 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:93:34:0,93,1395 +20 10095128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:87:33:0,87,986 +20 10095129 . A . . END=10095132 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:93:33:0,93,1395 +20 10095133 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:81:33:0,81,937 +20 10095134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095135 . T . . END=10095161 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:34:0,99,1485 +20 10095162 . A . . END=10095172 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:90:32:0,90,989 +20 10095173 . C . . END=10095182 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:33:0,99,1023 +20 10095183 . T . . END=10095184 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:96:37:0,96,1440 +20 10095185 . T . . END=10095186 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:38:99:38:0,99,1485 +20 10095187 . G . . END=10095196 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:90:32:0,90,1124 +20 10095197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:87:33:0,87,1305 +20 10095198 . T . . END=10095200 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:90:33:0,90,1350 +20 10095201 . C . . END=10095203 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095204 . A . . END=10095205 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:93:36:0,93,1395 +20 10095206 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:75:36:0,75,1081 +20 10095207 . T . . END=10095209 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:96:35:0,96,1093 +20 10095210 . T . . END=10095213 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:34:0,99,1485 +20 10095214 . T . . END=10095236 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:93:32:0,93,1002 +20 10095237 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095238 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:94:35:0,94,1083 +20 10095239 . T . . END=10095240 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095241 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:88:34:0,88,1071 +20 10095242 . A . . END=10095245 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:77:34:0,77,1045 +20 10095247 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:96:32:0,96,992 +20 10095248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,102,1066 +20 10095249 . A . . END=10095250 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095251 . G . . END=10095260 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:99:34:0,99,1112 +20 10095261 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:93:35:0,93,1106 +20 10095262 . T . . END=10095278 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:34:0,99,1051 +20 10095279 . A . . END=10095285 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:90:35:0,90,1350 +20 10095286 . G . . END=10095288 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:84:33:0,84,1260 +20 10095289 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:75:31:0,75,925 +20 10095290 . T . . END=10095299 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:81:29:0,81,1215 +20 10095300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:64:29:0,64,867 +20 10095301 . G . . END=10095302 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:29:0,81,1215 +20 10095303 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:75:30:0,75,910 +20 10095304 . A . . END=10095305 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:87:30:0,87,1305 +20 10095306 . T . . END=10095307 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:78:29:0,78,1170 +20 10095308 . A . . END=10095310 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:80:31:0,80,923 +20 10095311 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:78:30:0,78,864 +20 10095312 . C . . END=10095318 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:28:0,81,871 +20 10095319 . T . . END=10095327 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:75:29:0,75,1125 +20 10095328 . G . . END=10095329 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:81:28:0,81,1215 +20 10095330 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:78:29:0,78,1170 +20 10095331 . T . . END=10095335 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:81:29:0,81,1215 +20 10095336 . A . . END=10095341 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:72:26:0,72,820 +20 10095342 . G . . END=10095344 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:69:27:0,69,1035 +20 10095345 . C . . END=10095350 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:72:28:0,72,1080 +20 10095351 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:30:0,81,1215 +20 10095352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:70:28:0,70,822 +20 10095353 . A . . END=10095362 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:81:27:0,81,840 +20 10095363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:68:29:0,68,841 +20 10095364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:87:29:0,87,892 +20 10095365 . C . . END=10095366 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:90:30:0,90,920 +20 10095367 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:65:30:0,65,908 +20 10095368 . T . . END=10095372 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:93:31:0,93,941 +20 10095373 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:85:32:0,85,979 +20 10095374 . G . . END=10095376 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:90:32:0,90,971 +20 10095377 . C . . END=10095381 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:80:32:0,80,947 +20 10095382 . G . . END=10095385 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:90:32:0,90,1350 +20 10095386 . G . . END=10095387 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:84:31:0,84,1260 +20 10095388 . G . . END=10095395 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:72:30:0,72,1080 +20 10095396 . C . . END=10095412 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:63:32:0,63,945 +20 10095413 . T . . END=10095415 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:54:37:0,54,810 +20 10095416 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:51:37:0,51,765 +20 10095417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:48:40:0,48,720 +20 10095418 . T . . END=10095419 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:45:39:0,45,675 +20 10095420 . A . . END=10095421 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:39:40:0,39,585 +20 10095422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:42:36:42:0,36,540 +20 10095423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:43:33:43:0,33,495 +20 10095424 . A . . END=10095426 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:30:40:0,30,450 +20 10095427 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:27:41:0,27,405 +20 10095428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:24:41:0,24,360 +20 10095429 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:21:41:0,21,315 +20 10095430 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:18:40:0,18,270 +20 10095431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:15:39:0,15,225 +20 10095432 . GTGATGATGA G,GTGA, . . BaseQRankSum=1.26;DP=112;ExcessHet=3.01;MQRankSum=-4.431e+00;RAW_MQandDP=353748,112;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL:SB ./.:27,23,0,0:50:99:877,0,2108,959,2181,3140,959,2181,3140,3140:16,11,12,11 ./.:0,0,27,0:27:82:1217,1217,1217,82,82,0,1217,1217,82,1217:0,0,13,14 +20 10095433 . T *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095434 . G *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095435 . A *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095436 . T *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095437 . G *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095438 . A *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095439 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:36:0:36:0,0,0,0,0,0 +20 10095440 . G *, . . DP=109 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:35:90:32:0,90,1021,90,1021,1021 +20 10095441 . A *, . . DP=109 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:35:90:32:0,90,1021,90,1021,1021 +20 10095442 . T . . END=10095468 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:90:32:0,90,1021 +20 10095469 . T . . END=10095472 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:99:33:0,99,1037 +20 10095473 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:54:33:0,54,948 +20 10095474 . A . . END=10095475 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:67:33:0,67,1016 +20 10095476 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:71:33:0,71,939 +20 10095477 . A . . END=10095478 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:96:32:0,96,1056 +20 10095479 . A . . END=10095499 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:37:0,100,1117 +20 10095500 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:98:39:0,98,1096 +20 10095501 . T . . END=10095502 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:39:0,101,1151 +20 10095503 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:98:38:0,98,1135 +20 10095504 . G . . END=10095508 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:36:0,102,1530 +20 10095509 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:95:37:0,95,1111 +20 10095510 . C . . END=10095512 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:37:0,108,1620 +20 10095513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:95:37:0,95,1123 +20 10095514 . G . . END=10095521 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:37:0,105,1575 +20 10095522 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:94:39:0,94,1135 +20 10095523 . G . . END=10095532 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:37:0,108,1620 +20 10095533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:88:39:0,88,1137 +20 10095534 . A . . END=10095535 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:39:0,108,1620 +20 10095536 . T . . END=10095537 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:84:39:0,84,1113 +20 10095538 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:96:38:0,96,1120 +20 10095539 . C . . END=10095541 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:38:0,99,1485 +20 10095542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:89:36:0,89,1072 +20 10095543 . T . . END=10095560 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:99:36:0,102,1107 +20 10095561 . A . . END=10095564 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:96:40:0,96,1440 +20 10095565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:99:40:0,99,1485 +20 10095566 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:92:40:0,92,1140 +20 10095567 . A . . END=10095568 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:38:0,102,1530 +20 10095569 . A . . END=10095573 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:96:37:0,96,1440 +20 10095574 . C . . END=10095575 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:99:36:0,99,1485 +20 10095576 . G . . END=10095580 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:93:33:0,93,1395 +20 10095581 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:34:66:34:0,66,998 +20 10095582 . A . . END=10095587 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:34:90:30:0,90,966 +20 10095588 . A . . END=10095591 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:84:35:0,84,1095 +20 10095593 . C . . END=10095597 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:99:36:0,105,1575 +20 10095598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:94:37:0,94,1128 +20 10095599 . A . . END=10095636 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:99:36:0,100,1121 +20 10095637 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:79:35:0,79,1059 +20 10095638 . A . . END=10095639 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:99:35:0,102,1530 +20 10095640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:88:35:0,88,1069 +20 10095641 . A . . END=10095647 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:99:34:0,99,1485 +20 10095648 . T . . END=10095653 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:90:34:0,90,1072 +20 10095654 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095655 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:96:35:0,96,1440 +20 10095656 . T . . END=10095658 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:34:0,100,1111 +20 10095659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:35:96:35:0,96,1440 +20 10095660 . A . . END=10095661 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095662 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:81:36:0,81,1111 +20 10095663 . C . . END=10095668 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:37:0,99,1485 +20 10095669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:40:96:40:0,96,1241 +20 10095670 . T . . END=10095692 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:99:37:0,101,1144 +20 10095693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:39:84:39:0,84,1170 +20 10095694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:38:99:38:0,102,1530 +20 10095695 . A . . END=10095696 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:92:36:0,92,1167 +20 10095697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:37:86:37:0,86,1043 +20 10095698 . C . . END=10095701 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:36:90:35:0,90,1350 +20 10095702 . A . . END=10095711 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:84:30:0,84,1260 +20 10095712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:30:58:30:0,58,881 +20 10095713 . A . . END=10095727 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:31:81:29:0,81,1215 +20 10095728 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:31:78:31:0,78,1170 +20 10095729 . T . . END=10095735 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:32:81:31:0,81,1215 +20 10095736 . C . . END=10095740 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,120,1800 ./.:33:90:32:0,90,1350 +20 10095741 . A G, . . BaseQRankSum=-5.340e-01;DP=105;ExcessHet=3.01;MQRankSum=-2.313e+00;RAW_MQandDP=233528,71;ReadPosRankSum=-5.000e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,34,0:70:99:.:1104,0,1233,1213,1335,2547:14,22,18,16 ./.:.:34:67:34:0,67,972,67,972,972 +20 10095742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:33:96:33:0,96,1440 +20 10095743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095744 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095745 . T . . END=10095746 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095747 . T . . END=10095749 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:91:35:0,91,1059 +20 10095750 . G . . END=10095761 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095762 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:37:92:37:0,92,1021 +20 10095763 . G . . END=10095770 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:38:99:36:0,100,1099 +20 10095771 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:66:35:0,66,1071 +20 10095772 . A . . END=10096152 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:48:99:36:0,101,1104 +20 10096153 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:96:39:0,96,1440 +20 10096154 . T . . END=10096163 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:40:99:37:0,99,1485 +20 10096164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:36:92:36:0,92,1081 +20 10096165 . G . . END=10096189 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:99:36:0,99,1122 +20 10096190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:98:42:0,98,1267 +20 10096191 . C . . END=10096212 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:37:0,102,1255 +20 10096213 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:80:39:0,80,1140 +20 10096214 . T . . END=10096236 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:37:0,99,1223 +20 10096237 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:40:86:40:0,86,1175 +20 10096238 . T . . END=10096242 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:41:99:40:0,120,1221 +20 10096243 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:93:42:0,93,1181 +20 10096244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:42:0,111,1228 +20 10096245 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:95:42:0,95,1235 +20 10096246 . A . . END=10096292 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:47:99:40:0,108,1181 +20 10096293 . C T, . . BaseQRankSum=4.66;DP=115;ExcessHet=3.01;MQRankSum=1.40;RAW_MQandDP=257261,75;ReadPosRankSum=-1.135e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,38,0:75:99:.:1384,0,1258,1495,1372,2867:21,16,21,17 ./.:.:47:99:40:0,108,1181,108,1181,1181 +20 10096294 . T . . END=10096317 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:47:99:40:0,108,1181 +20 10096318 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:48:94:48:0,94,1351 +20 10096319 . C . . END=10096356 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:49:99:44:0,120,1800 +20 10096357 . A G, . . BaseQRankSum=0.964;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=1.55 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:57:0,120,1800,120,1800,1800 ./.:1,41,0:42:94:.:1166,94,0,1169,121,1196:1,0,25,16 +20 10096358 . T . . END=10096455 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:48:99:43:0,104,1361 +20 10096456 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:52:98:52:0,98,1401 +20 10096457 . T . . END=10096595 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:60:99:43:0,99,1273 +20 10096596 . C T, . . BaseQRankSum=2.73;DP=130;ExcessHet=3.01;MQRankSum=0.612;RAW_MQandDP=300461,87;ReadPosRankSum=-1.700e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,47,0:87:99:.:1591,0,1273,1711,1414,3125:19,21,23,24 ./.:.:60:99:43:0,99,1273,99,1273,1273 +20 10096597 . T . . END=10096717 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:60:99:43:0,99,1273 +20 10096718 . C T, . . BaseQRankSum=-2.220e-01;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=0.856 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:90:99:75:0,120,1800,120,1800,1800 ./.:49,2,0:51:99:.:0,107,1451,146,1456,1495:25,24,1,1 +20 10096719 . T . . END=10096732 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:61:99:55:0,120,1800 +20 10096733 . C T, . . BaseQRankSum=1.16;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=212400,59;ReadPosRankSum=-9.330e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:90:99:75:0,120,1800,120,1800,1800 ./.:1,56,0:57:99:.:1747,143,0,1750,168,1775:0,1,27,29 +20 10096734 . G . . END=10096767 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:60:99:57:0,120,1800 +20 10096768 . A C, . . BaseQRankSum=-2.764e+00;DP=148;ExcessHet=3.01;MQRankSum=-1.609e+00;RAW_MQandDP=525823,148;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL:SB ./.:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 ./.:0,56,0:56:99:1785,168,0,1785,168,1785:0,0,26,30 +20 10096769 . A . . END=10096857 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:55:99:50:0,102,1530 +20 10096858 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:54:96:54:0,96,1440 +20 10096859 . T . . END=10096861 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:54:87:53:0,87,1305 +20 10096862 . A . . END=10096874 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:55:63:47:0,63,945 +20 10096875 . A . . END=10096876 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:51:57:50:0,57,855 +20 10096877 . G . . END=10096878 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:51:48:50:0,48,720 +20 10096879 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:51:42:51:0,42,630 +20 10096880 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:50:39:50:0,39,585 +20 10096881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:36:52:0,36,540 +20 10096882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:33:52:0,33,495 +20 10096883 . A . . END=10096885 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:53:27:48:0,27,405 +20 10096886 . T . . END=10096888 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:53:21:52:0,21,315 +20 10096889 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:18:52:0,18,270 +20 10096890 . C . . END=10096893 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:52:15:50:0,15,225 +20 10096894 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:50:12:50:0,12,180 +20 10096895 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:50:9:50:0,9,135 +20 10096896 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:48:6:48:0,6,90 +20 10096897 . T . . END=10096898 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:47:0:47:0,0,0 +20 10096899 . G T, . . BaseQRankSum=2.76;DP=120;ExcessHet=3.01;MQRankSum=-1.387e+00;RAW_MQandDP=428838,120;ReadPosRankSum=0.422 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 ./.:0,41,0:41:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,14,27 +20 10096900 . G . . END=10096904 GT:DP:GQ:MIN_DP:PL ./.:82:99:78:0,120,1800 ./.:47:0:46:0,0,0 +20 10096905 . TA T, . . BaseQRankSum=-7.550e-01;DP=123;ExcessHet=3.01;MQRankSum=-1.677e+00;RAW_MQandDP=436879,123;ReadPosRankSum=0.461 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 ./.:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096906 . A *, . . DP=123 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 ./.:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096907 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:82:0,120,1800 ./.:48:0:48:0,0,0 +20 10096908 . T . . END=10096924 GT:DP:GQ:MIN_DP:PL ./.:84:99:82:0,120,1800 ./.:47:99:45:0,112,1358 +20 10096925 . T C, . . BaseQRankSum=-4.687e+00;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-6.140e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:84:99:82:0,120,1800,120,1800,1800 ./.:20,18,0:38:99:.:364,0,556,424,609,1033:6,14,7,11 +20 10096926 . G . . END=10096932 GT:DP:GQ:MIN_DP:PL ./.:84:99:82:0,120,1800 ./.:46:99:43:0,118,1289 +20 10096933 . G C, . . BaseQRankSum=-1.914e+00;DP=123;ExcessHet=3.01;MQRankSum=-1.802e+00;RAW_MQandDP=435579,123;ReadPosRankSum=0.334 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 ./.:0,38,0:38:99:0|1:10096933_G_C:1730,117,0,1730,117,1730:0,0,13,25 +20 10096934 . T . . END=10096957 GT:DP:GQ:MIN_DP:PL ./.:90:99:86:0,120,1800 ./.:48:99:43:0,116,1435 +20 10096958 . G A, . . BaseQRankSum=2.84;DP=139;ExcessHet=3.01;MQRankSum=-1.701e+00;RAW_MQandDP=493179,139;ReadPosRankSum=-1.833e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 ./.:0,47,0:47:99:0|1:10096933_G_C:1897,141,0,1897,141,1897:0,0,16,31 +20 10096959 . G . . END=10097023 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:54:99:40:0,99,1197 +20 10097024 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:41:96:41:0,96,1215 +20 10097025 . G . . END=10097039 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:42:99:40:0,104,1197 +20 10097040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:90:40:0,90,1144 +20 10097041 . A . . END=10097042 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:99:40:0,108,1620 +20 10097043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:38:80:38:0,80,1137 +20 10097044 . T . . END=10097061 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:39:99:38:0,99,1134 +20 10097062 . T . . END=10097066 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:93:40:0,93,1395 +20 10097067 . A . . END=10097068 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:41:87:41:0,87,1305 +20 10097069 . A . . END=10097074 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:43:90:42:0,90,1350 +20 10097075 . T G, . . BaseQRankSum=1.82;ClippingRankSum=0.00;DP=126;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=438028,126;ReadPosRankSum=1.53 GT:AD:DP:GQ:PL:SB ./.:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 ./.:1,33,0:34:92:1056,92,0,1058,99,1065:0,1,16,17 +20 10097076 . A . . END=10097079 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:41:81:40:0,81,1215 +20 10097080 . A . . END=10097085 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:43:72:42:0,72,1080 +20 10097086 . A . . END=10097089 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:42:60:41:0,60,900 +20 10097090 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:41:54:41:0,54,810 +20 10097091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:40:51:40:0,51,765 +20 10097092 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:42:39:0,42,630 +20 10097093 . G . . END=10097094 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:39:38:0,39,585 +20 10097095 . T . . END=10097096 GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:40:33:40:0,33,495 +20 10097097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:38:30:38:0,30,450 +20 10097098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:36:24:36:0,24,360 +20 10097099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:18:39:0,18,270 +20 10097100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:77:0,120,1800 ./.:39:21:39:0,21,315 +20 10097101 . C CTTT,CTTTT, . . BaseQRankSum=-1.134e+00;DP=104;ExcessHet=3.01;MQRankSum=-2.428e+00;RAW_MQandDP=353094,104;ReadPosRankSum=2.09 GT:AD:DP:GQ:PL:SB ./.:34,26,4,0:64:99:1129,0,1306,558,1324,2012,982,1430,2052,2377:22,12,15,15 ./.:0,0,22,0:22:71:1008,1008,1009,71,71,0,1008,1009,71,1009:0,0,13,9 +20 10097102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:0:36:0,0,0 +20 10097103 . T . . END=10097107 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:60:35:0,60,900 +20 10097108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:72:36:0,72,1080 +20 10097109 . T . . END=10097111 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:36:66:34:0,66,990 +20 10097112 . C T, . . BaseQRankSum=-1.189e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=108000,30;ReadPosRankSum=-8.330e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:60:0,120,1800,120,1800,1800 ./.:27,3,0:30:36:.:0,36,662,79,670,713:14,13,3,0 +20 10097113 . T . . END=10097115 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:72:35:0,72,1080 +20 10097116 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:34:0:34:0,0,794 +20 10097117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:75:35:0,75,1125 +20 10097118 . G . . END=10097120 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:29:0:29:0,0,602 +20 10097121 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:27:46:27:0,46,767 +20 10097122 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:78:30:0,78,920 +20 10097123 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:55:30:0,55,879 +20 10097124 . G . . END=10097133 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:29:81:27:0,81,816 +20 10097134 . C . . END=10097140 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:90:31:0,90,1350 +20 10097141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:33:71:33:0,71,988 +20 10097142 . A . . END=10097144 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:93:31:0,93,960 +20 10097145 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:29:87:29:0,87,919 +20 10097146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:96:32:0,96,1009 +20 10097147 . G . . END=10097148 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:34:99:34:0,101,955 +20 10097149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:76:35:0,76,1005 +20 10097150 . G . . END=10097152 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:99:35:0,104,1001 +20 10097153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:32:96:32:0,96,971 +20 10097154 . A . . END=10097177 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:40:99:34:0,102,1033 +20 10097178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:39:96:39:0,96,1133 +20 10097179 . A . . END=10097356 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:45:99:39:0,100,1124 +20 10097357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:41:92:41:0,92,1242 +20 10097358 . A . . END=10097416 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:41:99:38:0,99,1162 +20 10097417 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:38:96:38:0,96,1151 +20 10097418 . G . . END=10097421 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:37:99:34:0,99,1485 +20 10097422 . T . . END=10097428 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:35:90:33:0,90,1350 +20 10097429 . G . . END=10097432 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:33:84:32:0,84,1260 +20 10097433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:64:30:0,64,876 +20 10097434 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:78:30:0,78,1170 +20 10097435 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,120,1800 ./.:30:66:30:0,66,990 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, . . BaseQRankSum=1.82;DP=119;ExcessHet=3.01;MQRankSum=-6.464e+00;RAW_MQandDP=262143,89;ReadPosRankSum=-3.097e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:57,32,0:89:99:.:1092,0,2241,1263,2338,3601:23,34,11,21 ./.:.:30:66:30:0,66,990,66,990,990 +20 10097437 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC *,TTTTCTTTCTTTCTTTCTTTCTTTCTTTC,T, . . DP=106;ExcessHet=3.01;RAW_MQandDP=325330,106 GT:AD:DP:GQ:PL:SB ./.:0,32,23,0,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642,2201,1453,1262,2642,2642:0,0,16,39 ./.:0,0,0,21,0:21:67:928,928,928,928,928,928,67,67,67,0,928,928,928,67,928:0,0,6,15 +20 10097438 . T *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097439 . T *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097440 . T *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097441 . C *, . . DP=106 GT:AD:DP:GQ:PL:SB ./.:0,23,0:55:99:2127,1195,1125,2201,1262,2642:0,0,16,39 ./.:0,21,0:21:67:928,67,0,928,67,928:0,0,6,15 +20 10097442 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097443 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097444 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097445 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097446 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097447 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097448 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097449 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097450 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097451 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097452 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097453 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097454 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097455 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097456 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097457 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097458 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097459 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097460 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097461 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097462 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097463 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097464 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097465 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097466 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097467 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097468 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097469 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:0:63:0,0,557,0,557,557 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097470 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:19:0:19:0,0,0 +20 10097471 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:18:33:18:0,33,495 +20 10097472 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:19:36:19:0,36,540 +20 10097473 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:16:0:16:0,0,95 +20 10097474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:18:39:18:0,39,585 +20 10097475 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:0:63:0,0,557 ./.:18:0:17:0,0,261 +20 10097476 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:11:66:0,11,2255 ./.:18:0:17:0,0,261 +20 10097477 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:16:42:16:0,42,630 +20 10097478 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:0:18:0,0,311 +20 10097479 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:42:20:0,42,630 +20 10097480 . T . . END=10097482 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:17:0:15:0,0,280 +20 10097483 . T . . END=10097484 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:45:19:0,45,531 +20 10097485 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:0:18:0,0,435 +20 10097486 . T . . END=10097487 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:54:20:0,54,625 +20 10097488 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:19:24:19:0,24,531 +20 10097489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:22:18:0,22,509 +20 10097490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:32:21:0,32,562 +20 10097491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:29:21:0,29,589 +20 10097492 . T . . END=10097493 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:57:20:0,57,855 +20 10097494 . T . . END=10097495 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:60:20:0,60,609 +20 10097496 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:54:18:0,54,557 +20 10097497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:19:28:19:0,28,490 +20 10097498 . C . . END=10097501 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:22:60:20:0,60,598 +20 10097502 . T . . END=10097503 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:72:25:0,72,1080 +20 10097504 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:66:26:0,66,762 +20 10097505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:75:26:0,75,1125 +20 10097506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:27:81:27:0,81,846 +20 10097507 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:78:26:0,78,831 +20 10097508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:27:81:27:0,81,822 +20 10097509 . C . . END=10097512 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:25:72:24:0,72,687 +20 10097513 . G . . END=10097514 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:28:81:27:0,81,759 +20 10097515 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:78:30:0,78,854 +20 10097516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,886 +20 10097517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,863 +20 10097518 . T . . END=10097521 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:92:31:0,92,941 +20 10097522 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:77:32:0,77,955 +20 10097523 . G . . END=10097525 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,931 +20 10097526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,881 +20 10097527 . A . . END=10097529 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:90:30:0,90,940 +20 10097530 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:75:33:0,75,982 +20 10097531 . G . . END=10097532 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10097533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,960 +20 10097534 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,967 +20 10097535 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:88:33:0,88,1011 +20 10097536 . T . . END=10097537 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:96:34:0,96,1440 +20 10097538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:70:33:0,70,995 +20 10097539 . G . . END=10097542 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:30:0,90,931 +20 10097543 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,914 +20 10097544 . A . . END=10097546 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:30:0,90,957 +20 10097547 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,948 +20 10097548 . G . . END=10097549 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:31:0,90,875 +20 10097550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:87:33:0,87,911 +20 10097551 . A . . END=10097554 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:90:30:0,90,933 +20 10097555 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:61:31:0,61,872 +20 10097556 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,984 +20 10097557 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:75:32:0,75,900 +20 10097558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:82:31:0,82,940 +20 10097559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:60:31:0,60,835 +20 10097560 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10097561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,948 +20 10097562 . G . . END=10097564 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:90:30:0,90,939 +20 10097565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:82:31:0,82,951 +20 10097566 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:79:31:0,79,934 +20 10097567 . T . . END=10097569 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:93:32:0,93,1395 +20 10097570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:65:31:0,65,891 +20 10097571 . T . . END=10097572 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,936 +20 10097573 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:85:32:0,85,936 +20 10097574 . G . . END=10097583 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:93:31:0,93,971 +20 10097584 . C . . END=10097585 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:99:33:0,99,1001 +20 10097586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,911 +20 10097587 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:78:32:0,78,938 +20 10097588 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,940 +20 10097589 . A . . END=10097591 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:99:34:0,102,1030 +20 10097592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:90:34:0,90,1016 +20 10097593 . C . . END=10097595 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:99:33:0,99,1012 +20 10097596 . G . . END=10097598 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:91:32:0,91,954 +20 10097599 . C . . END=10097601 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:99:34:0,102,1063 +20 10097602 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:88:35:0,88,1102 +20 10097603 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:76:35:0,76,1041 +20 10097604 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:99:35:0,99,1485 +20 10097605 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:82:35:0,82,1062 +20 10097606 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:99:35:0,99,1485 +20 10097607 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:89:35:0,89,1065 +20 10097608 . C . . END=10097609 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:93:34:0,93,1395 +20 10097610 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:88:35:0,88,1036 +20 10097611 . A . . END=10097613 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:93:35:0,93,1395 +20 10097614 . C . . END=10097625 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:81:29:0,81,1014 +20 10097626 . C A, . . BaseQRankSum=1.09;DP=77;ExcessHet=3.01;MQRankSum=-1.331e+00;RAW_MQandDP=162820,48;ReadPosRankSum=1.01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:28,20,0:48:99:.:655,0,957,739,1017,1757:8,20,8,12 ./.:.:33:81:29:0,81,1014,81,1014,1014 +20 10097627 . T . . END=10097628 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:81:29:0,81,1014 +20 10097629 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:30:78:30:0,78,1170 +20 10097630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:81:31:0,81,1215 +20 10097631 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:64:31:0,64,916 +20 10097632 . T . . END=10097633 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:72:31:0,72,1080 +20 10097634 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:68:29:0,68,806 +20 10097635 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:72:28:0,72,1080 +20 10097636 . T . . END=10097639 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:66:27:0,66,792 +20 10097640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:26:56:26:0,56,715 +20 10097641 . C . . END=10097648 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:25:63:24:0,63,945 +20 10097649 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:57:23:0,57,649 +20 10097650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:60:24:0,60,900 +20 10097651 . C . . END=10097653 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:57:21:0,57,855 +20 10097654 . T . . END=10097657 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:54:21:0,54,810 +20 10097658 . C . . END=10097665 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:51:19:0,51,765 +20 10097666 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:18:54:18:0,54,556 +20 10097667 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:57:19:0,57,568 +20 10097668 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:18:22:18:0,22,461 +20 10097669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:54:19:0,54,810 +20 10097670 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:41:19:0,41,505 +20 10097671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:20:19:0,20,481 +20 10097672 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:21:47:21:0,47,612 +20 10097673 . T . . END=10097675 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:60:22:0,60,900 +20 10097676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:58:23:0,58,642 +20 10097677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:60:23:0,60,900 +20 10097678 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:46:23:0,46,645 +20 10097679 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:20:48:20:0,48,570 +20 10097680 . T . . END=10097681 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:22:63:22:0,63,945 +20 10097682 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:45:23:0,45,601 +20 10097683 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:69:24:0,69,1035 +20 10097684 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:53:24:0,53,706 +20 10097685 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:69:24:0,69,1035 +20 10097686 . T . . END=10097692 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:26:72:24:0,72,764 +20 10097693 . T . . END=10097694 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:69:27:0,69,792 +20 10097695 . C . . END=10097697 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:75:26:0,75,1125 +20 10097698 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:65:27:0,65,805 +20 10097699 . T . . END=10097700 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:78:26:0,78,823 +20 10097701 . T . . END=10097704 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:81:28:0,81,887 +20 10097705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:57:28:0,57,847 +20 10097706 . T . . END=10097710 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:78:27:0,78,1170 +20 10097711 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:81:29:0,81,1215 +20 10097712 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:75:29:0,75,872 +20 10097713 . C . . END=10097720 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:81:30:0,81,1215 +20 10097721 . C . . END=10097723 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:32:90:32:0,90,1350 +20 10097724 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:87:29:0,87,905 +20 10097725 . G . . END=10097728 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:32:90:30:0,90,905 +20 10097729 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:99:33:0,99,971 +20 10097730 . A . . END=10097737 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:93:32:0,93,981 +20 10097738 . G . . END=10097750 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:37:99:35:0,105,1005 +20 10097751 . T C, . . BaseQRankSum=-3.680e-01;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=1.08 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:60:99:49:0,120,1800,120,1800,1800 ./.:1,37,0:38:82:.:994,82,0,997,110,1024:0,1,16,21 +20 10097752 . G . . END=10097763 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:38:99:36:0,105,1575 +20 10097764 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:39:84:39:0,84,1141 +20 10097765 . C . . END=10097788 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:42:99:39:0,111,1193 +20 10097789 . T C, . . BaseQRankSum=-1.157e+00;DP=100;ExcessHet=3.01;MQRankSum=-2.805e+00;RAW_MQandDP=343694,100;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL:SB ./.:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 ./.:0,43,0:43:99:1330,129,0,1330,129,1330:0,0,22,21 +20 10097790 . C . . END=10097868 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:42:99:36:0,100,1119 +20 10097869 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:90:37:0,90,1136 +20 10097870 . T . . END=10097879 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:99:37:0,99,1120 +20 10097880 . G . . END=10097882 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:96:37:0,96,1440 +20 10097883 . G . . END=10097897 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:33:84:30:0,84,1260 +20 10097898 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:30:79:30:0,79,922 +20 10097899 . C . . END=10097900 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:33:90:32:0,90,1350 +20 10097901 . C . . END=10097905 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:99:35:0,99,1485 +20 10097906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:35:88:35:0,88,1026 +20 10097907 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:92:36:0,92,1084 +20 10097908 . C . . END=10097915 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:99:35:0,99,1485 +20 10097916 . T . . . GT:DP:GQ:MIN_DP:PL ./.:40:88:40:0,88,1449 ./.:36:99:35:0,99,1485 +20 10097917 . C . . END=10097919 GT:DP:GQ:MIN_DP:PL ./.:40:96:39:0,96,1440 ./.:36:99:35:0,99,1485 +20 10097920 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:99:40:0,99,1485 ./.:36:99:35:0,99,1485 +20 10097921 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:35:92:35:0,92,1058 +20 10097922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:33:76:33:0,76,991 +20 10097923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:35:99:35:0,99,1485 +20 10097924 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:34:82:34:0,82,1038 +20 10097925 . C . . END=10097926 GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:34:99:34:0,99,1485 +20 10097927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:38:0,99,1485 ./.:34:99:34:0,99,1485 +20 10097928 . G A, . . BaseQRankSum=-1.203e+00;DP=66;ExcessHet=3.01;MQRankSum=-1.654e+00;RAW_MQandDP=229323,66;ReadPosRankSum=-7.900e-02 GT:AD:DP:GQ:PL:SB ./.:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 ./.:0,29,0:29:87:939,87,0,939,87,939:0,0,21,8 +20 10097929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:34:81:34:0,81,972 +20 10097930 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:34:99:33:0,99,1013 +20 10097931 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:99:33:0,99,1013 +20 10097932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:90:34:0,90,1011 +20 10097933 . C . . END=10097935 GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:34:99:33:0,99,1031 +20 10097936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:99:33:0,99,1031 +20 10097937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:90:34:0,90,1057 +20 10097938 . G . . END=10097939 GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:35:99:35:0,102,1530 +20 10097940 . T . . END=10097941 GT:DP:GQ:MIN_DP:PL ./.:35:84:35:0,84,1260 ./.:35:96:35:0,96,1440 +20 10097942 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:35:96:35:0,96,1440 +20 10097943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:35:80:35:0,80,993 +20 10097944 . C . . END=10097946 GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:36:93:35:0,93,1395 +20 10097947 . G . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:32:81:27:0,81,866 +20 10097948 . C . . END=10097949 GT:DP:GQ:MIN_DP:PL ./.:38:87:38:0,87,1305 ./.:32:81:27:0,81,866 +20 10097950 . T . . END=10097951 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:32:81:27:0,81,866 +20 10097952 . A . . END=10097953 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:32:81:27:0,81,866 +20 10097954 . C . . END=10097957 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:32:81:27:0,81,866 +20 10097958 . C . . END=10097960 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:32:81:27:0,81,866 +20 10097961 . A . . END=10097965 GT:DP:GQ:MIN_DP:PL ./.:34:93:34:0,93,1395 ./.:32:81:27:0,81,866 +20 10097966 . C . . END=10097969 GT:DP:GQ:MIN_DP:PL ./.:35:87:34:0,87,1305 ./.:32:81:27:0,81,866 +20 10097970 . G . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:32:81:27:0,81,866 +20 10097971 . A . . END=10097978 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:29:75:28:0,75,1125 +20 10097979 . C . . END=10097980 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:31:81:30:0,81,1215 +20 10097981 . T . . END=10097985 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:31:90:31:0,90,947 +20 10097986 . C . . END=10097988 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:30:87:30:0,87,1305 +20 10097989 . T . . END=10097996 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10097997 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:86:34:0,86,958 +20 10097998 . C . . END=10098002 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10098003 . T . . END=10098006 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:32:84:30:0,84,896 +20 10098007 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:30:79:30:0,79,871 +20 10098008 . C . . END=10098009 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:30:84:30:0,84,1260 +20 10098010 . T . . END=10098011 GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:30:84:30:0,84,1260 +20 10098012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:32:90:32:0,90,1350 +20 10098013 . T . . END=10098014 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,99,1485 ./.:32:90:32:0,90,1350 +20 10098015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:33:54:33:0,54,926 +20 10098016 . T . . END=10098022 GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:32:90:31:0,90,913 +20 10098023 . G . . END=10098027 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:35:99:34:0,99,1485 +20 10098028 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:34:81:34:0,81,1002 +20 10098029 . T . . END=10098031 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:34:96:34:0,96,1440 +20 10098032 . T . . END=10098037 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:37:99:35:0,99,1485 +20 10098038 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:38:97:38:0,97,1122 +20 10098039 . G . . END=10098056 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:39:99:36:0,99,1151 +20 10098057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:37:96:37:0,96,1085 +20 10098058 . A . . END=10098059 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:40:99:39:0,106,1184 +20 10098060 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:38:87:38:0,87,1139 +20 10098061 . A . . END=10098065 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:39:99:38:0,114,1222 +20 10098066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:40:88:40:0,88,1176 +20 10098067 . A . . END=10098074 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:42:99:40:0,100,1191 +20 10098075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:40:92:40:0,92,1602 ./.:42:99:40:0,100,1191 +20 10098076 . T . . END=10098089 GT:DP:GQ:MIN_DP:PL ./.:38:99:37:0,99,1485 ./.:42:99:40:0,100,1191 +20 10098090 . T . . END=10098093 GT:DP:GQ:MIN_DP:PL ./.:37:96:36:0,96,1440 ./.:42:99:40:0,100,1191 +20 10098094 . T . . END=10098096 GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:42:99:40:0,100,1191 +20 10098097 . A . . END=10098099 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:42:99:40:0,100,1191 +20 10098100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:86:40:0,86,1236 +20 10098101 . A . . END=10098102 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:44:99:39:0,111,1294 +20 10098103 . A . . END=10098108 GT:DP:GQ:MIN_DP:PL ./.:34:84:33:0,84,1260 ./.:44:99:39:0,111,1294 +20 10098109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:36:0,93,1395 ./.:44:99:39:0,111,1294 +20 10098110 . G C, . . BaseQRankSum=2.51;DP=80;ExcessHet=3.01;MQRankSum=-1.477e+00;RAW_MQandDP=282482,80;ReadPosRankSum=-7.300e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 ./.:0,44,0:44:99:0|1:10098110_G_C:1893,135,0,1893,135,1893:0,0,18,26 +20 10098111 . T . . END=10098112 GT:DP:GQ:MIN_DP:PL ./.:36:93:35:0,93,1395 ./.:45:99:44:0,114,1710 +20 10098113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:87:35:0,87,1305 ./.:45:99:44:0,114,1710 +20 10098114 . C . . END=10098119 GT:DP:GQ:MIN_DP:PL ./.:36:93:35:0,93,1395 ./.:45:99:44:0,114,1710 +20 10098120 . T . . END=10098125 GT:DP:GQ:MIN_DP:PL ./.:34:84:34:0,84,1260 ./.:45:99:44:0,114,1710 +20 10098126 . A . . END=10098127 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:45:99:44:0,114,1710 +20 10098128 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:42:89:42:0,89,1200 +20 10098129 . T . . END=10098132 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:44:99:43:0,118,1352 +20 10098133 . T . . END=10098134 GT:DP:GQ:MIN_DP:PL ./.:38:91:37:0,91,1395 ./.:44:99:43:0,118,1352 +20 10098135 . C A, . . BaseQRankSum=-1.155e+00;DP=80;ExcessHet=3.01;MQRankSum=1.55;RAW_MQandDP=286382,80;ReadPosRankSum=-5.910e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 ./.:0,41,0:41:99:0|1:10098110_G_C:1780,126,0,1780,126,1780:0,0,21,20 +20 10098136 . A . . END=10098147 GT:DP:GQ:MIN_DP:PL ./.:36:90:33:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:87:33:0,87,1305 ./.:42:99:40:0,106,1249 +20 10098149 . T . . END=10098150 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098151 . A . . END=10098160 GT:DP:GQ:MIN_DP:PL ./.:33:83:31:0,83,1260 ./.:42:99:40:0,106,1249 +20 10098161 . A . . END=10098163 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098164 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:41:89:41:0,89,1218 +20 10098165 . C . . END=10098172 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:39:99:37:0,99,1139 +20 10098173 . T . . END=10098176 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:36:87:36:0,87,1305 +20 10098177 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:36:90:36:0,90,1350 +20 10098178 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:36:81:36:0,81,1215 +20 10098179 . A . . END=10098180 GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:37:72:37:0,72,1080 +20 10098181 . T . . END=10098195 GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:34:63:33:0,63,945 +20 10098196 . A . . END=10098197 GT:DP:GQ:MIN_DP:PL ./.:30:81:27:0,81,1116 ./.:33:57:33:0,57,855 +20 10098198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:54:33:0,54,810 +20 10098199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:45:33:0,45,675 +20 10098200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:39:33:0,39,585 +20 10098201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:34:27:34:0,27,405 +20 10098202 . G . . END=10098203 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:33:21:33:0,21,315 +20 10098204 . G . . END=10098207 GT:DP:GQ:MIN_DP:PL ./.:24:60:21:0,60,900 ./.:31:15:30:0,15,225 +20 10098208 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:21:0,60,900 ./.:31:12:31:0,12,180 +20 10098209 . T . . END=10098216 GT:DP:GQ:MIN_DP:PL ./.:24:60:21:0,60,900 ./.:29:0:26:0,0,0 +20 10098217 . T . . END=10098218 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:29:0:26:0,0,0 +20 10098219 . TATATATA T, . . BaseQRankSum=3.15;DP=54;ExcessHet=3.01;MQRankSum=-2.050e-01;RAW_MQandDP=184505,54;ReadPosRankSum=0.427 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098220 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098221 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098222 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098223 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098224 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098225 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098226 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098227 . T . . END=10098228 GT:DP:GQ:MIN_DP:PL ./.:18:30:18:0,30,450 ./.:31:0:30:0,0,0 +20 10098229 . A . . . GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:34:32:34:0,32,910 +20 10098230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:34:78:34:0,78,1170 +20 10098231 . A . . END=10098233 GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:37:84:36:0,84,1260 +20 10098234 . T . . END=10098236 GT:DP:GQ:MIN_DP:PL ./.:17:21:13:0,21,315 ./.:41:93:40:0,93,1395 +20 10098237 . A T, . . BaseQRankSum=6.000e-03;DP=47;ExcessHet=3.01;MQRankSum=-1.742e+00;RAW_MQandDP=159000,47;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 ./.:0,33,0:33:98:0|1:10098219_TATATATA_T:1345,98,0,1345,98,1345:0,0,16,17 +20 10098238 . A . . END=10098241 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:42:84:41:0,84,1260 +20 10098242 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:35:44:35:0,44,916 +20 10098243 . T . . END=10098244 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:42:81:39:0,81,1215 +20 10098245 . T . . END=10098248 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:42:81:39:0,81,1215 +20 10098249 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:9:0,18,270 ./.:36:0:36:0,0,662 +20 10098250 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:9:0,18,270 ./.:44:72:44:0,72,1080 +20 10098251 . A . . END=10098254 GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:44:72:44:0,72,1080 +20 10098255 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:36:52:36:0,52,897 +20 10098256 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:45:57:45:0,57,855 +20 10098257 . A . . END=10098260 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:48:0:47:0,0,405 +20 10098261 . T . . END=10098262 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:48:87:48:0,87,1305 +20 10098263 . T . . END=10098264 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:49:90:44:0,90,1350 +20 10098265 . T C, . . BaseQRankSum=1.83;DP=50;ExcessHet=3.01;MQRankSum=-1.834e+00;RAW_MQandDP=10564,6;ReadPosRankSum=0.00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:2,4,0:6:59:.:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 ./.:.:49:90:44:.:.:0,90,1350,90,1350,1350 +20 10098266 . A . . END=10098270 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:44:81:43:0,81,1215 +20 10098271 . A . . END=10098272 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:49:72:43:0,72,1080 +20 10098273 . A . . END=10098275 GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:49:72:43:0,72,1080 +20 10098276 . T . . END=10098278 GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:42:60:37:0,60,900 +20 10098279 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:37:54:37:0,54,810 +20 10098280 . A . . END=10098284 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,126 ./.:48:51:42:0,51,765 +20 10098285 . T . . END=10098288 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,126 ./.:43:45:41:0,45,675 +20 10098289 . A . . END=10098290 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,126 ./.:41:33:40:0,33,495 +20 10098291 . A . . END=10098292 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:42:27:41:0,27,405 +20 10098293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:29:24:29:0,24,360 +20 10098294 . T . . END=10098297 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:40:15:40:0,15,225 +20 10098298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:36:12:36:0,12,180 +20 10098299 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:39:9:39:0,9,135 +20 10098300 . T . . END=10098305 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:41:6:35:0,6,90 +20 10098306 . G . . END=10098307 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:32:3:27:0,3,45 +20 10098308 . AAT A, . . DP=35;ExcessHet=3.01;RAW_MQandDP=7200,2 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098309 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098310 . T *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,80 ./.:39:0:33:0,0,0 +20 10098312 . T . . END=10098321 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,80 ./.:40:72:37:0,72,1080 +20 10098322 . A . . END=10098327 GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,121 ./.:38:60:32:0,60,900 +20 10098328 . T . . END=10098329 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,169 ./.:38:60:32:0,60,900 +20 10098330 . A . . END=10098338 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:38:45:31:0,45,675 +20 10098339 . A . . END=10098342 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:35:0:33:0,0,217 +20 10098343 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:34:51:34:0,51,765 +20 10098344 . A . . . GT:DP:GQ:MIN_DP:PL ./.:4:0:4:0,0,1 ./.:32:0:32:0,0,0 +20 10098345 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:33:39:33:0,39,585 +20 10098346 . A . . END=10098348 GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:31:36:28:0,36,540 +20 10098349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:29:27:29:0,27,405 +20 10098350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:29:24:29:0,24,360 +20 10098351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:28:15:28:0,15,225 +20 10098352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:29:12:29:0,12,180 +20 10098353 . A . . END=10098356 GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:28:9:24:0,9,135 +20 10098357 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:23:6:23:0,6,90 +20 10098358 . T . . END=10098360 GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:9:0:2:0,0,0 +20 10098361 . T . . END=10098380 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:9:0:2:0,0,0 +20 10098381 . T . . END=10098431 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:9:0:2:0,0,0 +20 10098432 . A . . END=10098435 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:2:3:2:0,3,45 +20 10098436 . A . . END=10098454 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:0:0:0:0,0,0 +20 10098455 . A . . END=10098551 GT:DP:GQ:MIN_DP:PL ./.:0:0:0:0,0,0 ./.:0:0:0:0,0,0 +20 10098552 . T . . END=10098572 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:0:0:0:0,0,0 +20 10098573 . A . . END=10098574 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:9:21:9:0,21,315 +20 10098575 . A . . END=10098580 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:10:0:9:0,0,0 +20 10098581 . T . . END=10098586 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:12:27:11:0,27,405 +20 10098587 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:30:13:0,30,450 +20 10098588 . T . . END=10098594 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:27:13:0,27,405 +20 10098595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:14:13:0,14,365 +20 10098596 . A . . END=10098597 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:14:0,0,0 +20 10098598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,346 +20 10098599 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,374 +20 10098600 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,353 +20 10098601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,399 +20 10098602 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:17:14:0,17,415 +20 10098603 . T . . END=10098608 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:21:13:0,21,315 +20 10098609 . A . . END=10098612 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:18:14:0,18,270 +20 10098613 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:12:0:12:0,0,74 +20 10098614 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:18:13:0,18,270 +20 10098615 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:9:14:0,9,363 +20 10098616 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,363 +20 10098617 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:14:0,0,6 +20 10098618 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:9:14:0,9,356 +20 10098619 . T . . END=10098624 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:15:14:0,15,225 +20 10098625 . A . . END=10098626 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:10:15:0,10,384 +20 10098627 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,322 +20 10098628 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:10:15:0,10,380 +20 10098629 . G . . END=10098632 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:12:0,0,44 +20 10098633 . A . . END=10098636 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:27:14:0,27,405 +20 10098637 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:12:15:0,12,379 +20 10098638 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:14:9:14:0,9,359 +20 10098639 . T . . END=10098643 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:15:21:14:0,21,315 +20 10098644 . ATT A, . . DP=8;ExcessHet=3.01;RAW_MQandDP=8736,7 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098645 . T *, . . DP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098646 . T *, . . DP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:16:0:16:0,0,228 +20 10098648 . T . . END=10098650 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:18:33:17:0,33,495 +20 10098651 . A . . END=10098653 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:18:33:17:0,33,495 +20 10098654 . A . . END=10098657 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:17:0:17:0,0,155 +20 10098658 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:16:29:16:0,29,391 +20 10098659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:18:30:18:0,30,450 +20 10098660 . G A, . . DP=11;ExcessHet=3.01;RAW_MQandDP=16843,10 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:3:1:.:.:0,3,33,3,33,33 ./.:0,7,0:7:21:.:0|1:10098644_ATT_A:315,21,0,315,21,315:0,0,5,2 +20 10098661 . T . . END=10098666 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:20:24:19:0,24,360 +20 10098667 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:20:0:20:0,0,433 +20 10098668 . A AAT, . . DP=12;ExcessHet=3.01;RAW_MQandDP=20443,11 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:3:1:.:.:0,3,33,3,33,33 ./.:0,8,0:8:27:.:0|1:10098644_ATT_A:405,27,0,405,27,405:0,0,6,2 +20 10098669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:0:21:0,0,63 +20 10098670 . T . . END=10098671 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:9:21:0,9,135 +20 10098672 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:12:21:0,12,180 +20 10098673 . A . . END=10098674 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:21:12:21:0,12,180 +20 10098675 . A . . END=10098678 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:21:0:20:0,0,339 +20 10098679 . T . . END=10098682 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:22:18:21:0,18,270 +20 10098683 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:22:18:21:0,18,270 +20 10098684 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:20:15:20:0,15,225 +20 10098685 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:19:12:19:0,12,180 +20 10098686 . T . . END=10098688 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,150 ./.:19:9:19:0,9,135 +20 10098689 . GTA G, . . DP=21;ExcessHet=3.01;RAW_MQandDP=37368,17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098690 . T *, . . DP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098691 . A *, . . DP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,150 ./.:21:0:21:0,0,0 +20 10098693 . A . . END=10098696 GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,201 ./.:21:21:20:0,21,315 +20 10098697 . A . . END=10098700 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:21:20:0,21,315 +20 10098701 . T . . END=10098703 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:15:20:0,15,225 +20 10098704 . A G, . . DP=26;ExcessHet=3.01;RAW_MQandDP=48168,20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:6:18:6:.:.:0,18,231,18,231,231 ./.:0,16,0:16:54:.:0|1:10098644_ATT_A:810,54,0,810,54,810:0,0,11,5 +20 10098705 . T . . END=10098707 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:15:20:0,15,225 +20 10098708 . A . . END=10098712 GT:DP:GQ:MIN_DP:PL ./.:7:21:7:0,21,277 ./.:21:15:20:0,15,225 +20 10098713 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:0:8:0,0,262 ./.:21:15:20:0,15,225 +20 10098714 . T . . END=10098717 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:21:15:20:0,15,225 +20 10098718 . T . . END=10098719 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:6:20:0,6,90 +20 10098720 . A . . END=10098722 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:3:19:0,3,45 +20 10098723 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:10:8:0,10,265 ./.:20:3:19:0,3,45 +20 10098724 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:3:19:0,3,45 +20 10098725 . T . . END=10098728 GT:DP:GQ:MIN_DP:PL ./.:8:21:7:0,21,289 ./.:20:0:20:0,0,0 +20 10098729 . T TATATA, . . DP=32;ExcessHet=3.01;RAW_MQandDP=61892,23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:9:24:9:.:.:0,24,360,24,360,360 ./.:0,19,0:19:57:.:0|1:10098644_ATT_A:855,57,0,855,57,855:0,0,12,7 +20 10098730 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:0:20:0,0,0 +20 10098731 . T . . END=10098732 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:27:20:0,27,405 +20 10098733 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:9:9:0,9,309 ./.:20:0:20:0,0,493 +20 10098734 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:0:20:0,0,493 +20 10098735 . T . . END=10098737 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:27:20:0,27,405 +20 10098738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:23:20:0,23,595 +20 10098739 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,353 ./.:17:27:17:0,27,405 +20 10098740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,353 ./.:15:18:15:0,18,270 +20 10098741 . A . . END=10098748 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:15:18:15:0,18,270 +20 10098749 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:16:12:15:0,12,180 +20 10098750 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:0:9:0,0,289 ./.:16:12:15:0,12,180 +20 10098751 . T . . END=10098754 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:16:12:15:0,12,180 +20 10098755 . T . . END=10098756 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:18:9:16:0,9,135 +20 10098757 . T . . END=10098761 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,343 ./.:18:9:16:0,9,135 +20 10098762 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:3:18:0,3,45 +20 10098763 . T . . END=10098770 GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:20:3:18:0,3,45 +20 10098771 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:21:0:20:0,0,0 +20 10098772 . T . . END=10098775 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:21:0:20:0,0,0 +20 10098776 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:21:3:20:0,3,45 +20 10098777 . A . . END=10098778 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:21:3:20:0,3,45 +20 10098779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:10:0,18,270 ./.:21:3:20:0,3,45 +20 10098780 . T . . END=10098782 GT:DP:GQ:MIN_DP:PL ./.:10:18:10:0,18,270 ./.:21:6:21:0,6,90 +20 10098783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:15:9:0,15,225 ./.:22:9:22:0,9,135 +20 10098784 . TAC T, . . DP=19;ExcessHet=3.01;RAW_MQandDP=33076,10 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:18:9:0,18,270,18,270,270 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098785 . A *, . . DP=19 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:18:9:0,18,270,18,270,270 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098786 . C *, . . DP=19 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:0:9:0,0,168,0,168,168 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098787 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:18:9:0,18,270 ./.:21:0:21:0,0,0 +20 10098788 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:18:22:18:0,22,489 +20 10098789 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:20:60:20:0,60,635 +20 10098790 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:41:22:0,41,590 +20 10098791 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:63:22:0,63,945 +20 10098792 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:48:22:0,48,586 +20 10098793 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:23:35:23:0,35,612 +20 10098794 . T . . END=10098797 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:63:24:0,63,945 +20 10098798 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:43:24:0,43,722 +20 10098799 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:63:24:0,63,945 +20 10098800 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:23:42:23:0,42,612 +20 10098801 . T . . END=10098802 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,326 ./.:22:60:22:0,60,900 +20 10098803 . T . . END=10098804 GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:22:60:22:0,60,900 +20 10098805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:22:33:22:0,33,541 +20 10098806 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:24:57:24:0,57,855 +20 10098807 . T . . END=10098808 GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:25:60:24:0,60,900 +20 10098809 . T . . . GT:DP:GQ:MIN_DP:PL ./.:13:33:13:0,33,495 ./.:25:57:25:0,57,855 +20 10098810 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:24:56:24:0,56,711 +20 10098811 . T . . END=10098815 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:27:61:24:0,61,699 +20 10098816 . T . . END=10098818 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:27:61:24:0,61,699 +20 10098819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:45:15:0,45,597 ./.:23:51:23:0,51,685 +20 10098820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:48:16:0,48,624 ./.:25:72:25:0,72,1080 +20 10098821 . T . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:72:25:0,72,1080 +20 10098822 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:50:25:0,50,702 +20 10098823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:72:25:0,72,1080 +20 10098824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:25:72:25:0,72,1080 +20 10098825 . G . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:23:69:23:0,69,710 +20 10098826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:25:72:25:0,72,1080 +20 10098827 . T . . . GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,752 ./.:26:60:25:0,60,900 +20 10098828 . T . . END=10098833 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,799 ./.:26:60:25:0,60,900 +20 10098834 . T . . END=10098835 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,799 ./.:26:51:26:0,51,765 +20 10098836 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:27:45:27:0,45,675 +20 10098837 . T . . END=10098838 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:27:42:26:0,42,630 +20 10098839 . C . . END=10098841 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:26:36:25:0,36,540 +20 10098842 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:26:36:25:0,36,540 +20 10098843 . A . . END=10098851 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:26:33:23:0,33,495 +20 10098852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:27:30:27:0,30,450 +20 10098853 . G . . END=10098857 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:27:27:27:0,27,405 +20 10098858 . G . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,990 ./.:26:24:25:0,24,360 +20 10098859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:29:24:0,29,851 ./.:26:24:25:0,24,360 +20 10098860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:69:23:0,69,881 ./.:27:21:27:0,21,315 +20 10098861 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,960 ./.:27:18:27:0,18,270 +20 10098862 . T . . END=10098866 GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,960 ./.:30:15:28:0,15,225 +20 10098867 . T . . END=10098868 GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,960 ./.:32:9:30:0,9,135 +20 10098869 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,902 ./.:32:9:30:0,9,135 +20 10098870 . G . . END=10098873 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,902 ./.:32:6:32:0,6,90 +20 10098874 . A . . END=10098877 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,902 ./.:33:3:32:0,3,45 +20 10098878 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:78:30:0,78,1170 ./.:33:3:32:0,3,45 +20 10098879 . A . . END=10098880 GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:33:3:32:0,3,45 +20 10098881 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:33:6:32:0,6,90 +20 10098882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:60:32:0,60,1207 ./.:33:6:32:0,6,90 +20 10098883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:56:32:0,56,1237 ./.:33:6:32:0,6,90 +20 10098884 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:84:32:0,84,1260 ./.:33:6:32:0,6,90 +20 10098885 . C CA, . . BaseQRankSum=0.165;DP=61;ExcessHet=3.01;MQRankSum=-4.449e+00;RAW_MQandDP=183016,61;ReadPosRankSum=-1.073e+00 GT:AD:DP:GQ:PL:SB ./.:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 ./.:0,29,0:29:87:1163,87,0,1163,87,1163:0,0,16,13 +20 10098886 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:33:0:33:0,0,0 +20 10098887 . C . . END=10098888 GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:35:99:34:0,102,1027 +20 10098889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:32:96:32:0,96,972 +20 10098890 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:34:99:33:0,99,918 +20 10098891 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:34:99:33:0,99,918 +20 10098892 . G . . END=10098893 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:99:33:0,99,918 +20 10098894 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:31:76:31:0,76,929 +20 10098895 . T . . END=10098896 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:99:33:0,99,1041 +20 10098897 . C . . END=10098898 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:33:96:32:0,96,995 +20 10098899 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:35:99:35:0,99,1485 +20 10098900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:96:34:0,96,1440 +20 10098901 . T . . END=10098902 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:96:34:0,96,1440 +20 10098903 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:33:87:33:0,87,955 +20 10098904 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:96:34:0,96,1440 +20 10098905 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:89:34:0,89,1030 +20 10098906 . C . . END=10098907 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:33:90:32:0,90,1350 +20 10098908 . C . . END=10098915 GT:DP:GQ:MIN_DP:PL ./.:27:60:25:0,60,900 ./.:33:90:32:0,90,1350 +20 10098916 . A . . END=10098918 GT:DP:GQ:MIN_DP:PL ./.:27:60:25:0,60,900 ./.:31:81:27:0,81,858 +20 10098919 . C . . END=10098923 GT:DP:GQ:MIN_DP:PL ./.:23:54:21:0,54,810 ./.:31:81:27:0,81,858 +20 10098924 . G . . END=10098926 GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:31:81:27:0,81,858 +20 10098927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:45:20:0,45,675 ./.:31:81:27:0,81,858 +20 10098928 . A . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:31:81:27:0,81,858 +20 10098929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:26:78:26:0,78,826 +20 10098930 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:28:81:27:0,81,814 +20 10098931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:28:81:27:0,81,814 +20 10098932 . G . . END=10098937 GT:DP:GQ:MIN_DP:PL ./.:21:45:19:0,45,675 ./.:28:81:27:0,81,814 +20 10098938 . A . . END=10098940 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:28:81:27:0,81,814 +20 10098941 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:28:81:27:0,81,814 +20 10098942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:23:63:23:0,63,945 ./.:28:81:27:0,81,814 +20 10098943 . T . . . GT:DP:GQ:MIN_DP:PL ./.:21:52:21:0,52,766 ./.:27:70:27:0,70,840 +20 10098944 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,867 ./.:27:81:27:0,81,869 +20 10098945 . T C, . . BaseQRankSum=1.48;DP=48;ExcessHet=3.01;MQRankSum=-2.504e+00;RAW_MQandDP=148542,48;ReadPosRankSum=1.04 GT:AD:DP:GQ:PL:SB ./.:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 ./.:0,25,0:25:75:793,75,0,793,75,793:0,0,13,12 +20 10098946 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,872 ./.:28:81:28:0,81,1215 +20 10098947 . T . . . GT:DP:GQ:MIN_DP:PL ./.:22:55:22:0,55,842 ./.:27:75:27:0,75,1125 +20 10098948 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,897 ./.:27:75:27:0,75,1125 +20 10098949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,937 ./.:28:69:28:0,69,1035 +20 10098950 . C . . END=10098951 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,937 ./.:29:72:28:0,72,1080 +20 10098952 . C . . END=10098953 GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:29:72:28:0,72,1080 +20 10098954 . A . . END=10098955 GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:30:66:29:0,66,990 +20 10098956 . A . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:30:66:29:0,66,990 +20 10098957 . C . . END=10098959 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:30:72:29:0,72,1080 +20 10098960 . G . . END=10098961 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:69:28:0,69,1035 +20 10098962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:72:29:0,72,1080 +20 10098963 . T . . END=10098966 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:28:69:27:0,69,1035 +20 10098967 . T . . END=10098971 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:28:72:28:0,72,1080 +20 10098972 . T . . END=10098983 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:81:28:0,81,866 +20 10098984 . A . . END=10098986 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:33:90:31:0,90,977 +20 10098987 . C T, . . BaseQRankSum=3.13;DP=55;ExcessHet=3.01;MQRankSum=-2.734e+00;RAW_MQandDP=64586,24;ReadPosRankSum=0.436 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:11,13,0:24:99:.:408,0,350,441,389,830:9,2,13,0 ./.:.:33:90:31:0,90,977,90,977,977 +20 10098988 . G . . END=10099008 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:33:90:31:0,90,977 +20 10099009 . G . . END=10099010 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:31:87:30:0,87,1305 +20 10099011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:31:77:31:0,77,941 +20 10099012 . T . . END=10099016 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:30:87:30:0,87,1305 +20 10099017 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,950 ./.:30:87:30:0,87,1305 +20 10099018 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,950 ./.:31:90:31:0,90,1350 +20 10099019 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:31:87:31:0,87,1305 +20 10099020 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:32:90:32:0,90,1350 +20 10099021 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:32:90:32:0,90,1350 +20 10099022 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:69:25:0,69,1035 ./.:32:90:32:0,90,1350 +20 10099023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:32:87:32:0,87,1305 +20 10099024 . C . . END=10099025 GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:33:90:33:0,90,1350 +20 10099026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:33:83:33:0,83,1048 +20 10099027 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:32:90:32:0,90,1350 +20 10099028 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:69:28:0,69,1035 ./.:33:88:33:0,88,999 +20 10099029 . T C, . . BaseQRankSum=-1.809e+00;DP=57;ExcessHet=3.01;MQRankSum=-3.641e+00;RAW_MQandDP=181311,57;ReadPosRankSum=-1.224e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 ./.:0,29,0:29:87:0|1:10099029_T_C:1277,87,0,1277,87,1277:0,0,17,12 +20 10099030 . C . . END=10099031 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:32:90:31:0,90,1350 +20 10099032 . T . . END=10099033 GT:DP:GQ:MIN_DP:PL ./.:28:63:28:0,63,945 ./.:31:87:31:0,87,1305 +20 10099034 . C A, . . BaseQRankSum=2.76;DP=55;ExcessHet=3.01;MQRankSum=-3.641e+00;RAW_MQandDP=174111,55;ReadPosRankSum=-1.850e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 ./.:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,17,10 +20 10099035 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:87:31:0,87,1305 +20 10099036 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:32:90:32:0,90,1350 +20 10099037 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:82:31:0,82,961 +20 10099038 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:30:90:30:0,90,972 +20 10099039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:81:31:0,81,924 +20 10099040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:26:51:26:0,51,765 ./.:31:81:31:0,81,924 +20 10099041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:54:27:0,54,810 ./.:31:81:31:0,81,924 +20 10099042 . T . . END=10099043 GT:DP:GQ:MIN_DP:PL ./.:26:57:24:0,57,855 ./.:31:81:31:0,81,924 +20 10099044 . A C, . . BaseQRankSum=-1.148e+00;DP=51;ExcessHet=3.01;MQRankSum=-4.418e+00;RAW_MQandDP=151645,51;ReadPosRankSum=-2.207e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 ./.:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,18,9 +20 10099045 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:24:0,60,900 ./.:32:84:32:0,84,1260 +20 10099046 . T C, . . BaseQRankSum=-2.165e+00;DP=51;ExcessHet=3.01;MQRankSum=-4.418e+00;RAW_MQandDP=151645,51;ReadPosRankSum=-2.297e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 ./.:0,27,0:27:84:0|1:10099029_T_C:1260,84,0,1260,84,1260:0,0,18,9 +20 10099047 . G . . END=10099050 GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:32:84:31:0,84,1260 +20 10099051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:31:67:31:0,67,886 +20 10099052 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:32:84:31:0,84,1260 +20 10099053 . G . . END=10099054 GT:DP:GQ:MIN_DP:PL ./.:23:54:23:0,54,810 ./.:32:84:31:0,84,1260 +20 10099055 . T C, . . BaseQRankSum=-1.554e+00;DP=54;ExcessHet=3.01;MQRankSum=-4.316e+00;RAW_MQandDP=164749,54;ReadPosRankSum=-1.970e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 ./.:0,30,0:30:90:0|1:10099029_T_C:1350,90,0,1350,90,1350:0,0,20,10 +20 10099056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:35:87:35:0,87,1305 +20 10099057 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:34:76:34:0,76,995 +20 10099058 . C . . END=10099061 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:34:87:32:0,87,1305 +20 10099062 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,921 ./.:34:73:34:0,73,1018 +20 10099063 . G . . END=10099067 GT:DP:GQ:MIN_DP:PL ./.:25:72:24:0,72,921 ./.:34:84:33:0,84,1260 +20 10099068 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1042 ./.:34:84:33:0,84,1260 +20 10099069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1042 ./.:36:45:36:0,45,935 +20 10099070 . G . . END=10099072 GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1042 ./.:37:81:36:0,81,1215 +20 10099073 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:37:81:36:0,81,1215 +20 10099074 . A . . END=10099077 GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:39:72:38:0,72,1080 +20 10099078 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:39:72:38:0,72,1080 +20 10099079 . C T, . . BaseQRankSum=1.43;DP=61;ExcessHet=3.01;MQRankSum=-2.821e+00;RAW_MQandDP=188962,61;ReadPosRankSum=0.969 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 ./.:0,31,0:31:96:0|1:10099029_T_C:1386,96,0,1386,96,1386:0,0,20,11 +20 10099080 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:36:72:36:0,72,1080 +20 10099081 . T . . END=10099087 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:39:66:37:0,66,990 +20 10099088 . C . . END=10099089 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:36:54:35:0,54,810 +20 10099090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:36:54:35:0,54,810 +20 10099091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:37:45:37:0,45,675 +20 10099092 . A . . END=10099094 GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:37:39:36:0,39,585 +20 10099095 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:31:0,90,1350 ./.:39:36:37:0,36,540 +20 10099096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:35:74:35:0,74,1310 ./.:39:36:37:0,36,540 +20 10099097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:41:25:41:0,25,1062 +20 10099098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:30:40:0,30,1027 +20 10099099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:6:40:0,6,1033 +20 10099100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:38:30:38:0,30,450 +20 10099101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:3:34:0,3,826 +20 10099102 . G . . END=10099104 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:38:30:36:0,30,450 +20 10099105 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:39:33:38:0,33,495 +20 10099106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:39:33:38:0,33,495 +20 10099107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,99,1485 ./.:36:0:36:0,0,787 +20 10099108 . T . . END=10099109 GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,99,1485 ./.:38:30:38:0,30,450 +20 10099110 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,99,1485 ./.:36:0:36:0,0,675 +20 10099111 . T TTTTGTTTG, . . BaseQRankSum=-1.207e+00;DP=70;ExcessHet=3.01;MQRankSum=-4.071e+00;RAW_MQandDP=209146,70;ReadPosRankSum=-2.730e-01 GT:AD:DP:GQ:PL:SB ./.:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 ./.:0,23,0:23:72:1041,72,0,1042,72,1042:0,0,12,11 +20 10099112 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:38:0:38:0,0,97 +20 10099113 . T . . END=10099114 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:75:38:0,75,1125 +20 10099115 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:36:60:36:0,60,948 +20 10099116 . T . . END=10099117 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:78:38:0,78,1170 +20 10099118 . T . . END=10099124 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:40:81:36:0,81,1215 +20 10099125 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:40:47:40:0,47,1084 +20 10099126 . T . . END=10099129 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:90:37:0,90,1350 +20 10099130 . T . . END=10099131 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:41:0:40:0,0,709 +20 10099132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:40:99:40:0,105,1575 +20 10099133 . T . . END=10099134 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:39:93:37:0,93,1099 +20 10099135 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:42:87:42:0,87,1228 +20 10099136 . T . . END=10099139 GT:DP:GQ:MIN_DP:PL ./.:57:99:49:0,114,1710 ./.:41:99:40:0,117,1755 +20 10099140 . G T, . . BaseQRankSum=-1.140e-01;DP=95;ExcessHet=3.01;MQRankSum=-2.469e+00;RAW_MQandDP=307130,95;ReadPosRankSum=0.338 GT:AD:DP:GQ:PL:SB ./.:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 ./.:0,31,0:31:93:1030,93,0,1030,93,1030:0,0,15,16 +20 10099141 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:90:40:0,90,1214 +20 10099142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:22:41:0,22,1104 +20 10099143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:18:39:0,18,1000 +20 10099144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:41:39:0,41,1059 +20 10099145 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:57:40:0,57,1094 +20 10099146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:99:40:0,117,1755 +20 10099147 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:52:40:0,52,1104 +20 10099148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:84:39:0,84,1147 +20 10099149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:50:39:0,50,1017 +20 10099150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:37:42:37:0,42,929 +20 10099151 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:78:41:0,78,1156 +20 10099152 . T . . END=10099163 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:99:39:0,105,1171 +20 10099164 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:86:39:0,86,1098 +20 10099165 . C . . END=10099180 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:42:99:38:0,103,1092 +20 10099181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:90:41:0,90,1188 +20 10099182 . T . . END=10099189 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:43:99:43:0,104,1261 +20 10099190 . G T, . . BaseQRankSum=-3.400e-02;DP=103;ExcessHet=3.01;MQRankSum=-1.711e+00;RAW_MQandDP=349360,103;ReadPosRankSum=-1.260e+00 GT:AD:DP:GQ:PL:SB ./.:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 ./.:0,36,0:36:99:1147,108,0,1147,108,1147:0,0,19,17 +20 10099191 . C . . END=10099193 GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:43:99:43:0,111,1665 +20 10099194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:44:98:44:0,98,1300 +20 10099195 . G . . END=10099215 GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:38:99:33:0,99,947 +20 10099216 . C . . END=10099219 GT:DP:GQ:MIN_DP:PL ./.:58:99:46:0,111,1665 ./.:34:96:33:0,96,1440 +20 10099220 . A G, . . BaseQRankSum=-1.664e+00;DP=76;ExcessHet=3.01;MQRankSum=-2.596e+00;RAW_MQandDP=261077,76;ReadPosRankSum=0.629 GT:AD:DP:GQ:PL:SB ./.:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 ./.:0,30,0:30:89:924,89,0,924,89,924:0,0,15,15 +20 10099221 . T . . END=10099223 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:34:96:33:0,96,1440 +20 10099224 . A . . END=10099225 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:99:35:0,99,1485 +20 10099226 . G . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:77:35:0,77,1066 +20 10099227 . C . . END=10099229 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:99:33:0,99,1017 +20 10099230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:35:99:33:0,99,1017 +20 10099231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:36:95:36:0,95,1108 +20 10099232 . C . . END=10099233 GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:37:99:35:0,99,1080 +20 10099234 . T . . END=10099235 GT:DP:GQ:MIN_DP:PL ./.:44:87:44:0,87,1305 ./.:37:99:35:0,99,1080 +20 10099236 . T . . END=10099238 GT:DP:GQ:MIN_DP:PL ./.:41:90:39:0,90,1350 ./.:37:99:35:0,99,1080 +20 10099239 . C . . END=10099241 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:37:99:35:0,99,1080 +20 10099242 . A . . END=10099246 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:35:90:32:0,90,1350 +20 10099247 . C . . END=10099248 GT:DP:GQ:MIN_DP:PL ./.:37:93:36:0,93,1395 ./.:35:90:32:0,90,1350 +20 10099249 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:87:36:0,87,1305 ./.:35:90:32:0,90,1350 +20 10099250 . G A, . . BaseQRankSum=3.17;DP=69;ExcessHet=3.01;MQRankSum=-2.272e+00;RAW_MQandDP=119006,37;ReadPosRankSum=0.583 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:16,21,0:37:99:.:728,0,424,776,487,1263:12,4,11,10 ./.:.:35:90:32:0,90,1350,90,1350,1350 +20 10099251 . A . . END=10099252 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:35:90:32:0,90,1350 +20 10099253 . T . . END=10099256 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:87:31:0,87,1305 +20 10099257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:90:32:0,90,1350 +20 10099258 . G . . END=10099260 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:87:32:0,87,1305 +20 10099261 . A . . END=10099264 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:34:90:33:0,90,1350 +20 10099265 . C . . END=10099269 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:35:99:34:0,99,1485 +20 10099270 . A C, . . BaseQRankSum=-2.866e+00;DP=62;ExcessHet=3.01;MQRankSum=-2.691e+00;RAW_MQandDP=98268,30;ReadPosRankSum=-1.380e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,3,0:30:60:.:0,60,1084,81,1092,1113:19,8,0,3 ./.:.:34:90:32:0,90,1033,90,1033,1033 +20 10099271 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:31:0,84,1260 ./.:34:90:32:0,90,1033 +20 10099272 . C . . END=10099296 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:90:32:0,90,1033 +20 10099297 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10099298 . A . . END=10099303 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:93:34:0,93,1395 +20 10099304 . T . . END=10099312 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:99:33:0,99,1074 +20 10099313 . A . . END=10099314 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:83:35:0,83,1066 +20 10099315 . G . . END=10099319 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:92:35:0,92,1093 +20 10099320 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10099321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:77:37:0,77,1046 +20 10099322 . C . . END=10099323 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10099324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:88:37:0,88,1130 +20 10099325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10099326 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:71:35:0,71,1075 +20 10099327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:94:35:0,94,1117 +20 10099328 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10099329 . T . . END=10099334 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:90:34:0,90,1092 +20 10099335 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:88:35:0,88,1093 +20 10099336 . G . . END=10099343 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:90:33:0,90,1350 +20 10099344 . T . . END=10099345 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:80:32:0,80,988 +20 10099346 . G . . END=10099347 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:93:32:0,93,1395 +20 10099348 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:30:76:30:0,76,856 +20 10099349 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:31:82:31:0,82,967 +20 10099350 . T . . END=10099351 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:93:31:0,93,979 +20 10099352 . C . . END=10099354 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:99:33:0,99,1049 +20 10099355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:86:34:0,86,1034 +20 10099356 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:96:32:0,96,1035 +20 10099357 . C . . END=10099358 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:99:33:0,99,1047 +20 10099359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:91:34:0,91,1061 +20 10099360 . C . . END=10099366 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:99:33:0,99,1046 +20 10099367 . T . . END=10099375 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:92:31:0,92,979 +20 10099376 . C . . END=10099379 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10099380 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:85:36:0,85,1107 +20 10099381 . C . . END=10099382 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:95:37:0,95,1138 +20 10099383 . T . . END=10099411 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:99:35:0,99,1159 +20 10099412 . C . . END=10099415 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:96:36:0,96,1440 +20 10099416 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:76:36:0,76,1088 +20 10099417 . G . . END=10099429 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:90:32:0,90,1350 +20 10099430 . A . . END=10099432 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,102,1530 +20 10099433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:92:37:0,92,1144 +20 10099434 . G . . END=10099531 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:44:99:37:0,100,1153 +20 10099532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:41:84:41:0,84,1217 +20 10099533 . A . . END=10099534 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:41:99:40:0,111,1665 +20 10099535 . G A, . . BaseQRankSum=5.03;DP=104;ExcessHet=3.01;MQRankSum=-1.418e+00;RAW_MQandDP=366651,104;ReadPosRankSum=-7.770e-01 GT:AD:DP:GQ:PL:SB ./.:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 ./.:0,38,0:38:99:1255,114,0,1255,114,1255:0,0,18,20 +20 10099536 . T . . END=10099556 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:39:99:38:0,103,1189 +20 10099557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:38:81:38:0,81,1104 +20 10099558 . A . . END=10099562 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:40:99:40:0,117,1755 +20 10099563 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:38:88:38:0,88,1182 +20 10099564 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:42:99:42:0,120,1800 +20 10099565 . C T, . . BaseQRankSum=4.59;DP=113;ExcessHet=3.01;MQRankSum=-1.266e+00;RAW_MQandDP=401810,113;ReadPosRankSum=1.23 GT:AD:DP:GQ:PL:SB ./.:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 ./.:0,43,0:43:99:1344,128,0,1344,128,1344:0,0,19,24 +20 10099566 . T . . END=10099599 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:45:99:42:0,113,1225 +20 10099600 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:44:90:44:0,90,1228 +20 10099601 . A . . END=10099606 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:45:99:41:0,117,1755 +20 10099607 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:42:73:42:0,73,1169 +20 10099608 . A . . END=10099623 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:41:99:40:0,104,1124 +20 10099624 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:40:86:40:0,86,1120 +20 10099625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:40:99:40:0,103,1186 +20 10099626 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:96:39:0,96,1440 +20 10099627 . A . . END=10099637 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:99:38:0,99,1222 +20 10099638 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:36:97:36:0,97,1095 +20 10099639 . A . . END=10099640 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:36:99:36:0,105,1575 +20 10099641 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:37:88:37:0,88,1087 +20 10099642 . C . . END=10099704 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:99:36:0,99,1087 +20 10099705 . A . . END=10099714 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:35:93:34:0,93,1395 +20 10099715 . G . . END=10099716 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:73:31:0,73,878 +20 10099717 . C . . END=10099724 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:81:31:0,81,1215 +20 10099725 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:90:33:0,90,1350 +20 10099726 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:66:33:0,66,958 +20 10099727 . C . . END=10099728 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:31:81:31:0,81,1215 +20 10099729 . T . . END=10099734 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:74:30:0,74,905 +20 10099735 . T . . END=10099737 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:81:31:0,81,1215 +20 10099738 . A . . END=10099739 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:78:30:0,78,1170 +20 10099740 . C . . END=10099741 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:81:30:0,81,1215 +20 10099742 . T . . END=10099743 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:72:29:0,72,873 +20 10099744 . A . . END=10099747 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:81:29:0,81,1215 +20 10099748 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:29:75:29:0,75,859 +20 10099749 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:31:90:31:0,90,1350 +20 10099750 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:81:33:0,81,985 +20 10099751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099752 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:96:32:0,96,953 +20 10099753 . C . . END=10099754 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099755 . C T, . . BaseQRankSum=1.55;DP=99;ExcessHet=3.01;MQRankSum=-2.200e-02;RAW_MQandDP=351410,99;ReadPosRankSum=-2.300e-01 GT:AD:DP:GQ:PL:SB ./.:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 ./.:0,32,0:32:95:979,95,0,979,95,979:0,0,13,19 +20 10099756 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:89:34:0,89,1001 +20 10099757 . T . . END=10099760 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:90:32:0,90,1025 +20 10099761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:82:33:0,82,991 +20 10099762 . G . . END=10099763 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:93:32:0,93,1395 +20 10099764 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:60:33:0,60,897 +20 10099765 . G . . END=10099768 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:93:32:0,93,1395 +20 10099769 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:33:82:33:0,82,943 +20 10099770 . A . . END=10099772 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:90:33:0,90,1350 +20 10099773 . C . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:87:34:0,87,931 +20 10099774 . A . . END=10099776 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:93:35:0,93,1395 +20 10099777 . A . . END=10099780 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:36:0,99,1485 +20 10099781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:36:96:36:0,96,1058 +20 10099782 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:99:35:0,99,1485 +20 10099783 . T . . END=10099790 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:91:34:0,91,1041 +20 10099791 . A . . END=10099792 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:36:0,99,1077 +20 10099793 . T . . END=10099797 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:93:35:0,93,1085 +20 10099798 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:89:35:0,89,1074 +20 10099799 . T . . END=10099800 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:36:93:35:0,93,1395 +20 10099801 . A . . END=10099804 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:35:0,99,1485 +20 10099805 . A . . END=10099807 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:96:34:0,96,1440 +20 10099808 . G . . END=10099809 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:99:35:0,99,1485 +20 10099810 . C . . END=10099812 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:91:34:0,91,992 +20 10099813 . C . . END=10099814 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:81:32:0,81,926 +20 10099815 . A . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:34:85:34:0,85,992 +20 10099817 . A . . END=10099820 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:99:34:0,102,1064 +20 10099821 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:84:35:0,84,1039 +20 10099822 . G . . END=10099825 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:36:99:35:0,102,1530 +20 10099826 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:35:76:35:0,76,1018 +20 10099827 . A . . END=10099831 GT:DP:GQ:MIN_DP:PL ./.:63:99:58:0,120,1800 ./.:37:99:36:0,102,1530 +20 10099832 . A G, . . BaseQRankSum=-4.563e+00;DP=108;ExcessHet=3.01;MQRankSum=0.869;RAW_MQandDP=379876,108;ReadPosRankSum=-1.023e+00 GT:AD:DP:GQ:PL:SB ./.:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 ./.:0,36,0:36:99:1112,108,0,1112,108,1112:0,0,16,20 +20 10099833 . T . . END=10099850 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:99:33:0,99,1050 +20 10099851 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:87:35:0,87,1040 +20 10099852 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099853 . G . . END=10099856 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:96:34:0,96,1440 +20 10099857 . G . . END=10099859 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:99:34:0,99,1485 +20 10099860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:91:34:0,91,1044 +20 10099861 . G . . END=10099862 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:33:0,99,1037 +20 10099863 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:96:34:0,96,1440 +20 10099864 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099865 . T . . END=10099867 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:92:34:0,92,1059 +20 10099868 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:91:37:0,91,1121 +20 10099870 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099871 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:97:37:0,97,1094 +20 10099872 . T . . END=10099881 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:99:34:0,99,996 +20 10099882 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:95:37:0,95,1132 +20 10099883 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099884 . A . . END=10099903 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:90:31:0,90,983 +20 10099904 . A . . END=10099906 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:99:33:0,99,1052 +20 10099907 . A . . END=10099909 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:96:32:0,96,953 +20 10099910 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:78:32:0,78,933 +20 10099911 . T . . END=10099912 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:90:33:0,90,1350 +20 10099913 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:60:34:0,60,980 +20 10099914 . T . . END=10099919 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:90:35:0,90,1350 +20 10099920 . T . . END=10099923 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:87:35:0,87,1305 +20 10099924 . A . . END=10099930 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:90:31:0,90,1350 +20 10099931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:76:31:0,76,925 +20 10099932 . T . . END=10099933 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:87:31:0,87,1305 +20 10099934 . A . . END=10099936 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:90:32:0,90,1350 +20 10099937 . A . . END=10099942 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:81:31:0,81,1215 +20 10099943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:78:31:0,78,1170 +20 10099944 . C . . END=10099968 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:81:29:0,81,1215 +20 10099969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:90:31:0,90,1350 +20 10099970 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:78:31:0,78,943 +20 10099971 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:93:33:0,93,1395 +20 10099972 . A . . END=10099975 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:99:34:0,99,1010 +20 10099976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:91:36:0,91,1021 +20 10099977 . T . . END=10099979 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:38:99:37:0,108,1620 +20 10099980 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:38:96:38:0,96,1145 +20 10099981 . T . . 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END=10000383 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:90:35:0,90,1350 +20 10000384 . A . . END=10000386 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:86:34:0,86,1023 +20 10000387 . T . . END=10000388 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:75:34:0,75,1125 +20 10000389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:54:34:0,54,870 +20 10000390 . T . . END=10000391 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:78:32:0,78,1170 +20 10000392 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:63:32:0,63,884 +20 10000393 . A . . END=10000395 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:80:32:0,80,924 +20 10000396 . T . . END=10000400 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:76:30:0,76,906 +20 10000401 . T . . END=10000402 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:80:31:0,80,993 +20 10000403 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10000404 . T . . END=10000405 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:86:33:0,86,1022 +20 10000406 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,1350 +20 10000407 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:78:32:0,78,980 +20 10000408 . A . . END=10000416 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:81:29:0,81,984 +20 10000417 . G . . END=10000418 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:26:75:25:0,75,751 +20 10000419 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:27:62:27:0,62,788 +20 10000420 . A . . END=10000422 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10000423 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10000424 . A . . END=10000429 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10000430 . A . . END=10000431 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:28:62:27:0,62,843 +20 10000432 . A . . END=10000433 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:28:81:27:0,81,872 +20 10000434 . T . . END=10000436 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10000437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:67:29:0,67,855 +20 10000438 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:75:29:0,75,1125 +20 10000439 . T G, . . DP=107;ExcessHet=3.01;RAW_MQandDP=376276,107 GT:AD:DP:GQ:PL:SB ./.:0,80,0:80:99:2833,240,0,2833,240,2833:0,0,49,31 ./.:0,27,0:27:80:716,80,0,716,80,716:0,0,19,8 +20 10000440 . T . . END=10000445 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:29:70:26:0,70,886 +20 10000446 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:26:58:26:0,58,812 +20 10000447 . A . . END=10000453 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:26:72:25:0,72,779 +20 10000454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:27:60:27:0,60,795 +20 10000455 . A . . END=10000460 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:27:78:26:0,78,834 +20 10000461 . T . . END=10000464 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:28:81:27:0,81,840 +20 10000465 . T . . END=10000466 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:32:93:32:0,93,1395 +20 10000467 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:89:36:0,89,1053 +20 10000468 . G . . END=10000469 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:96:36:0,96,1003 +20 10000470 . A . . END=10000471 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:99:35:0,105,1038 +20 10000472 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:96:36:0,96,1074 +20 10000473 . T . . END=10000482 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:99:35:0,105,1062 +20 10000483 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:38:98:38:0,98,1096 +20 10000484 . A . . END=10000501 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:40:99:38:0,108,1620 +20 10000502 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:41:81:41:0,81,1156 +20 10000503 . A . . END=10000527 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:39:99:38:0,105,1147 +20 10000528 . C . . END=10000529 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:38:91:38:0,91,1074 +20 10000530 . G . . END=10000533 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:38:99:36:0,105,1135 +20 10000534 . T C, . . BaseQRankSum=-2.640e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=126000,35;ReadPosRankSum=-3.830e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:55:99:41:0,100,1530,100,1530,1530 ./.:19,16,0:35:99:.:336,0,521,393,568,962:11,8,8,8 +20 10000535 . G . . END=10000538 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:41:99:39:0,104,1184 +20 10000539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:41:95:41:0,95,1194 +20 10000540 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:41:85:41:0,85,1159 +20 10000541 . T . . END=10000543 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:42:99:42:0,105,1575 +20 10000544 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:41:89:41:0,89,1162 +20 10000545 . G . . END=10000547 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:41:99:40:0,102,1530 +20 10000548 . C . . END=10000550 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:40:80:38:0,80,975 +20 10000551 . T . . END=10000552 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:37:77:37:0,77,1088 +20 10000553 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:37:99:37:0,99,1485 +20 10000554 . C . . END=10000556 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:37:63:37:0,63,999 +20 10000557 . C . . END=10000567 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:34:99:33:0,99,976 +20 10000568 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:37:95:37:0,95,1124 +20 10000569 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:37:84:37:0,84,1150 +20 10000570 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:35:99:35:0,102,1530 +20 10000571 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:37:81:37:0,81,1049 +20 10000572 . A . . END=10000581 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:99:35:0,102,1081 +20 10000582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:35:77:35:0,77,1096 +20 10000583 . T . . END=10000585 GT:DP:GQ:MIN_DP:PL ./.:55:99:41:0,100,1530 ./.:36:99:35:0,105,988 +20 10000586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1503 ./.:36:99:35:0,105,988 +20 10000587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:34:52:34:0,52,911 +20 10000588 . C . . END=10000589 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:36:0,105,1575 +20 10000590 . G . . END=10000591 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:80:35:0,80,1092 +20 10000592 . C . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:90:36:0,90,1084 +20 10000593 . C . . END=10000595 GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:35:0,105,1124 +20 10000596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:37:92:37:0,92,1120 +20 10000597 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:99:42:0,108,1620 ./.:36:99:36:0,108,1110 +20 10000598 . T A, . . DP=80;ExcessHet=3.01;RAW_MQandDP=261228,80 GT:AD:DP:GQ:PL:SB ./.:0,49,0:49:99:1970,147,0,1970,147,1970:0,0,19,30 ./.:0,31,0:31:93:992,93,0,992,93,992:0,0,14,17 +20 10000599 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:37:94:37:0,94,1126 +20 10000600 . A . . END=10000606 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:37:0,99,1171 +20 10000607 . A . . END=10000611 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:40:93:40:0,93,1395 +20 10000612 . A . . END=10000614 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:40:99:39:0,99,1485 +20 10000615 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:73:38:0,73,1138 +20 10000616 . A . . END=10000617 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:37:99:37:0,102,1530 +20 10000618 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:35:77:35:0,77,1043 +20 10000619 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:35:84:35:0,84,1092 +20 10000620 . A . . END=10000654 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:41:99:36:0,102,1145 +20 10000655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:94:38:0,94,1172 +20 10000656 . A . . END=10000658 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:36:0,105,1575 +20 10000659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:36:92:36:0,92,1094 +20 10000660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:38:0,100,1170 +20 10000661 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:93:38:0,93,1162 +20 10000662 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:99:38:0,108,1620 +20 10000663 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:38:86:38:0,86,1113 +20 10000664 . T . . END=10000693 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,120,1800 ./.:42:99:37:0,99,1125 +20 10000694 . G A, . . BaseQRankSum=3.60;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=-5.114e+00;RAW_MQandDP=194196,82;ReadPosRankSum=0.182 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,37,0:82:99:.:1037,0,1601,1173,1712,2885:25,20,18,19 ./.:.:42:99:37:0,99,1125,99,1125,1125 +20 10000695 . G . . END=10000757 GT:DP:GQ:MIN_DP:PL ./.:89:99:79:0,120,1800 ./.:42:99:37:0,99,1125 +20 10000758 . T A, . . DP=143;ExcessHet=3.01;RAW_MQandDP=443381,143 GT:AD:DP:GQ:PL:SB ./.:0,95,0:95:99:3867,286,0,3867,286,3867:0,0,45,50 ./.:0,47,0:47:99:1415,140,0,1415,140,1415:0,0,26,21 +20 10000759 . A . . END=10000788 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:47:99:45:0,120,1800 +20 10000789 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:47:96:47:0,96,1315 +20 10000790 . A . . END=10000906 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:46:99:37:0,99,1115 +20 10000907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:94:37:0,94,1107 +20 10000908 . T . . END=10000912 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:37:0,105,1575 +20 10000913 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:79:37:0,79,1082 +20 10000914 . A . . END=10000927 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:35:0,99,1191 +20 10000928 . A . . END=10000936 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:34:0,90,1350 +20 10000937 . A . . END=10000942 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:84:30:0,84,1260 +20 10000943 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:79:32:0,79,912 +20 10000944 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10000945 . C . . END=10000948 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:84:33:0,84,980 +20 10000949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:78:32:0,78,905 +20 10000950 . C . . END=10000952 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:87:32:0,87,1305 +20 10000953 . T . . END=10000954 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:35:0,90,1350 +20 10000955 . A . . END=10000956 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:86:33:0,86,998 +20 10000957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10000958 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:70:33:0,70,970 +20 10000959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:88:33:0,88,1012 +20 10000960 . T . . END=10000963 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:31:0,93,949 +20 10000964 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,951 +20 10000965 . A . . END=10000967 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10000968 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,1006 +20 10000969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10000970 . C . . END=10000973 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:87:31:0,87,1305 +20 10000974 . T . . END=10000995 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10000996 . A . . END=10000999 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:31:0,84,1260 +20 10001000 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:65:32:0,65,872 +20 10001001 . G . . END=10001012 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:31:0,90,901 +20 10001013 . C . . END=10001014 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:83:33:0,83,933 +20 10001015 . A . . END=10001018 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:33:0,90,1350 +20 10001019 . T G, . . BaseQRankSum=-2.541e+00;ClippingRankSum=0.00;DP=97;ExcessHet=3.01;MQRankSum=-7.498e+00;RAW_MQandDP=159195,65;ReadPosRankSum=-1.497e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,26,0:65:99:.:679,0,1426,796,1504,2300:17,22,14,12 ./.:.:32:81:32:0,81,1215,81,1215,1215 +20 10001020 . C . . END=10001023 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:81:32:0,81,1215 +20 10001024 . C . . END=10001028 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:72:30:0,72,885 +20 10001029 . T . . END=10001032 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:29:0,81,883 +20 10001033 . C . . END=10001036 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:30:0,90,962 +20 10001037 . A . . END=10001051 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:29:0,81,1215 +20 10001052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:75:29:0,75,911 +20 10001053 . A . . END=10001058 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:29:0,81,1215 +20 10001059 . C . . END=10001065 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001066 . T . . END=10001085 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:29:0,81,893 +20 10001086 . T . . END=10001089 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:78:31:0,78,1170 +20 10001090 . G . . END=10001097 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:30:0,81,1215 +20 10001098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:77:30:0,77,898 +20 10001100 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:90:30:0,90,964 +20 10001101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:87:29:0,87,908 +20 10001102 . A . . END=10001118 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,933 +20 10001119 . A . . END=10001129 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:33:82:31:0,82,949 +20 10001130 . T . . END=10001131 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:31:0,90,1350 +20 10001132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:82:31:0,82,941 +20 10001133 . T . . END=10001144 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:32:90:31:0,90,963 +20 10001145 . G . . END=10001148 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:33:81:32:0,81,1215 +20 10001149 . A . . END=10001154 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:78:30:0,78,1170 +20 10001155 . G . . END=10001159 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:28:0,81,965 +20 10001160 . T . . END=10001169 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:90:30:0,90,957 +20 10001170 . T . . END=10001176 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:30:0,81,1215 +20 10001177 . A . . END=10001182 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:78:28:0,78,1170 +20 10001183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:29:0,81,1215 +20 10001184 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:75:29:0,75,859 +20 10001185 . A . . END=10001192 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:81:28:0,81,1215 +20 10001193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:60:29:0,60,916 +20 10001194 . A . . END=10001199 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:81:30:0,81,1215 +20 10001200 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:71:31:0,71,959 +20 10001201 . T . . END=10001212 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:27:0,81,851 +20 10001213 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:78:26:0,78,799 +20 10001214 . A . . END=10001215 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:81:27:0,81,859 +20 10001216 . T . . END=10001219 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:78:27:0,78,1170 +20 10001220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,845 +20 10001221 . T . . END=10001225 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:75:26:0,75,1125 +20 10001226 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,1035 +20 10001227 . A . . END=10001228 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:75:27:0,75,1125 +20 10001229 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:81:30:0,81,1215 +20 10001230 . T . . END=10001246 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:70:27:0,70,807 +20 10001247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:65:28:0,65,827 +20 10001248 . A . . END=10001251 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:75:25:0,75,758 +20 10001252 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:69:27:0,69,1035 +20 10001253 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:46:26:0,46,774 +20 10001254 . T . . END=10001255 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:72:26:0,72,1080 +20 10001256 . A . . END=10001268 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:63:24:0,63,945 +20 10001269 . A . . END=10001270 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:72:26:0,72,1080 +20 10001271 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:25:69:25:0,69,1035 +20 10001272 . T . . END=10001274 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:27:72:26:0,72,1080 +20 10001275 . A . . END=10001277 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:30:84:30:0,84,1260 +20 10001278 . A . . END=10001281 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:78:27:0,78,1170 +20 10001282 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:81:29:0,81,1215 +20 10001283 . T . . END=10001287 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:73:28:0,73,790 +20 10001288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:58:29:0,58,802 +20 10001289 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:28:81:28:0,81,1215 +20 10001290 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:26:55:26:0,55,756 +20 10001291 . T . . END=10001294 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:29:84:29:0,84,1260 +20 10001295 . G . . END=10001297 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:31:90:30:0,90,873 +20 10001298 . T A, . . DP=105;ExcessHet=3.01;RAW_MQandDP=330093,105 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2946,220,0,2946,220,2946:0,0,41,32 ./.:0,30,0:30:90:918,90,0,918,90,918:0,0,16,14 +20 10001299 . C . . END=10001300 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:32:90:30:0,90,826 +20 10001301 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:35:89:35:0,89,999 +20 10001302 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:35:96:35:0,96,1440 +20 10001303 . A . . END=10001305 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:36:99:35:0,99,1485 +20 10001306 . T . . END=10001307 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:36:96:36:0,96,1440 +20 10001308 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:35:85:35:0,85,997 +20 10001309 . T . . END=10001313 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:33:96:33:0,96,1440 +20 10001314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:33:83:33:0,83,933 +20 10001315 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:34:91:34:0,91,1009 +20 10001316 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:34:81:34:0,81,992 +20 10001317 . A . . END=10001318 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:34:99:34:0,99,987 +20 10001319 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:34:96:34:0,96,1440 +20 10001320 . A . . END=10001334 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:35:99:34:0,99,998 +20 10001335 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:32:96:32:0,96,969 +20 10001336 . C . . END=10001358 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:37:99:34:0,99,943 +20 10001359 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:36:90:36:0,90,1026 +20 10001360 . T . . END=10001388 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:42:99:36:0,99,993 +20 10001389 . A . . END=10001392 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:43:93:42:0,93,1395 +20 10001393 . T . . END=10001402 GT:DP:GQ:MIN_DP:PL ./.:71:99:51:0,99,1485 ./.:44:72:43:0,72,1080 +20 10001403 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:93:50:0,93,1395 ./.:44:60:42:0,60,900 +20 10001404 . A . . END=10001406 GT:DP:GQ:MIN_DP:PL ./.:50:81:50:0,81,1215 ./.:44:60:42:0,60,900 +20 10001407 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:78:50:0,78,1170 ./.:44:60:42:0,60,900 +20 10001408 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:63:49:0,63,945 ./.:43:57:43:0,57,855 +20 10001409 . A . . END=10001410 GT:DP:GQ:MIN_DP:PL ./.:50:63:49:0,63,945 ./.:44:51:44:0,51,765 +20 10001411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:54:50:0,54,810 ./.:44:45:44:0,45,675 +20 10001412 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:48:50:0,48,720 ./.:44:39:44:0,39,585 +20 10001413 . T . . END=10001414 GT:DP:GQ:MIN_DP:PL ./.:51:42:51:0,42,630 ./.:44:36:43:0,36,540 +20 10001415 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:39:50:0,39,585 ./.:44:36:43:0,36,540 +20 10001416 . A . . END=10001420 GT:DP:GQ:MIN_DP:PL ./.:50:33:49:0,33,495 ./.:43:33:39:0,33,495 +20 10001421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:30:49:0,30,450 ./.:43:33:39:0,33,495 +20 10001422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:30:49:0,30,450 ./.:40:27:40:0,27,405 +20 10001423 . T . . END=10001425 GT:DP:GQ:MIN_DP:PL ./.:50:24:49:0,24,360 ./.:41:21:40:0,21,315 +20 10001426 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:24:49:0,24,360 ./.:41:18:40:0,18,270 +20 10001427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:5:53:0,5,1899 ./.:41:18:40:0,18,270 +20 10001428 . T . . END=10001429 GT:DP:GQ:MIN_DP:PL ./.:54:21:53:0,21,315 ./.:41:18:40:0,18,270 +20 10001430 . G . . END=10001431 GT:DP:GQ:MIN_DP:PL ./.:56:0:56:0,0,1743 ./.:41:18:40:0,18,270 +20 10001432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:18:56:0,18,270 ./.:42:6:41:0,6,90 +20 10001433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:56:0,0,1779 ./.:42:6:41:0,6,90 +20 10001434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:18:56:0,18,270 ./.:42:6:41:0,6,90 +20 10001435 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:0:55:0,0,1790 ./.:42:6:41:0,6,90 +20 10001436 . A AAGGCT, . . DP=95;ExcessHet=3.01;RAW_MQandDP=233996,95 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2339,156,0,2340,157,2340:0,0,43,7 ./.:0,36,0:36:99:1620,108,0,1620,108,1620:0,0,19,17 +20 10001437 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:0:57:0,0,0 ./.:42:0:42:0,0,0 +20 10001438 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:40:96:40:0,96,1440 +20 10001439 . G . . END=10001442 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:41:99:40:0,99,1485 +20 10001443 . C . . END=10001446 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:40:0:37:0,0,885 +20 10001447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:36:59:36:0,59,1053 +20 10001448 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:34:46:34:0,46,957 +20 10001449 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:35:99:35:0,99,1485 +20 10001450 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:36:45:36:0,45,1009 +20 10001451 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:36:99:36:0,102,1530 +20 10001452 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:36:97:36:0,97,1144 +20 10001453 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:37:88:37:0,88,1170 +20 10001454 . T . . END=10001466 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:38:99:36:0,99,1225 +20 10001467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:38:89:38:0,89,1159 +20 10001468 . A . . END=10001473 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,118,1800 ./.:40:99:39:0,108,1620 +20 10001474 . C T, . . DP=113;ExcessHet=3.01;RAW_MQandDP=281856,113 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2669,219,0,2669,219,2669:0,0,48,25 ./.:0,39,0:39:99:1234,117,0,1234,117,1234:0,0,21,18 +20 10001475 . G . . END=10001482 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:39:99:38:0,111,1665 +20 10001483 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:40:87:40:0,87,1204 +20 10001484 . A . . END=10001499 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:99:40:0,100,1202 +20 10001500 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:44:98:44:0,98,1276 +20 10001501 . A . . END=10001508 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:99:42:0,114,1710 +20 10001509 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:42:93:42:0,93,1262 +20 10001510 . A . . END=10001529 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:36:99:35:0,99,1133 +20 10001530 . G . . END=10001533 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:35:93:35:0,93,1395 +20 10001534 . T . . END=10001541 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:84:33:0,84,1260 +20 10001542 . T . . END=10001543 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:75:32:0,75,1012 +20 10001544 . G . . END=10001545 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:81:31:0,81,1215 +20 10001546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:73:33:0,73,971 +20 10001547 . G . . END=10001557 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:84:29:0,84,1260 +20 10001558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:29:71:29:0,71,903 +20 10001559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:30:87:30:0,87,1305 +20 10001560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:93:32:0,93,1395 +20 10001561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:83:32:0,83,990 +20 10001562 . A . . END=10001563 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001564 . T . . END=10001573 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:82:30:0,82,943 +20 10001574 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:76:31:0,76,950 +20 10001575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:31:61:31:0,61,877 +20 10001576 . T . . END=10001577 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:83:31:0,83,989 +20 10001578 . A . . END=10001582 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:90:32:0,90,1350 +20 10001583 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:87:32:0,87,1305 +20 10001584 . G . . END=10001589 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:32:0,90,975 +20 10001590 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:80:33:0,80,966 +20 10001591 . T . . END=10001594 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:33:0,90,1350 +20 10001595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:82:34:0,82,1005 +20 10001596 . A . . END=10001598 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:90:32:0,90,1034 +20 10001599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:69:33:0,69,946 +20 10001600 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:32:87:32:0,87,1305 +20 10001601 . G . . END=10001609 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:33:90:33:0,90,1350 +20 10001610 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:34:87:34:0,87,1305 +20 10001611 . G . . END=10001616 GT:DP:GQ:MIN_DP:PL ./.:95:99:72:0,120,1800 ./.:35:90:33:0,90,1044 +20 10001617 . C A, . . BaseQRankSum=1.26;ClippingRankSum=0.00;DP=136;ExcessHet=3.01;MQRankSum=1.37;RAW_MQandDP=358589,103;ReadPosRankSum=-5.780e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:52,51,0:103:99:.:1760,0,1781,1916,1935,3851:23,29,33,18 ./.:.:35:90:33:0,90,1044,90,1044,1044 +20 10001618 . T . . END=10001621 GT:DP:GQ:MIN_DP:PL ./.:101:99:95:0,120,1800 ./.:35:90:33:0,90,1044 +20 10001622 . T . . END=10001627 GT:DP:GQ:MIN_DP:PL ./.:101:99:95:0,120,1800 ./.:37:99:36:0,99,1485 +20 10001628 . G A, . . DP=133;ExcessHet=3.01;RAW_MQandDP=469348,133 GT:AD:DP:GQ:PL:SB ./.:0,95,0:95:99:3927,285,0,3927,285,3927:0,0,55,40 ./.:0,37,0:37:99:1119,110,0,1119,110,1119:0,0,21,16 +20 10001629 . G . . END=10001638 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:37:99:35:0,99,1075 +20 10001639 . G . . END=10001641 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001642 . G . . END=10001649 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:36:99:35:0,99,1485 +20 10001650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:36:95:36:0,95,1015 +20 10001651 . T . . END=10001654 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:37:99:36:0,105,1575 +20 10001655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:37:89:37:0,89,1109 +20 10001656 . A . . END=10001660 GT:DP:GQ:MIN_DP:PL ./.:82:99:76:0,120,1800 ./.:37:99:37:0,100,1121 +20 10001661 . T C, . . DP=117;ExcessHet=3.01;RAW_MQandDP=405174,117 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10001661_T_C:3635,249,0,3635,249,3635:0,0,49,32 ./.:0,35,0:35:99:0|1:10001661_T_C:1553,105,0,1553,105,1553:0,0,14,21 +20 10001662 . T . . END=10001669 GT:DP:GQ:MIN_DP:PL ./.:83:99:82:0,120,1800 ./.:37:99:36:0,108,1088 +20 10001670 . T G, . . DP=118;ExcessHet=3.01;RAW_MQandDP=400497,118 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10001661_T_C:3702,253,0,3702,253,3702:0,0,46,35 ./.:0,36,0:36:99:0|1:10001661_T_C:1583,108,0,1583,108,1583:0,0,15,21 +20 10001671 . G . . END=10001708 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:41:99:38:0,103,1175 +20 10001709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:43:96:43:0,96,1289 +20 10001710 . C . . END=10001828 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:43:99:38:0,101,1174 +20 10001829 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:39:68:39:0,68,1136 +20 10001830 . C . . END=10001850 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:39:99:35:0,99,1485 +20 10001851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:96:35:0,96,1440 +20 10001852 . G . . END=10001883 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:37:99:34:0,99,1152 +20 10001884 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:97:38:0,97,1146 +20 10001885 . C . . END=10001900 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:99:35:0,99,1147 +20 10001901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:92:35:0,92,1086 +20 10001902 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:99:33:0,99,1008 +20 10001903 . C . . END=10001904 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001905 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:85:34:0,85,993 +20 10001906 . A . . END=10001907 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:91:35:0,91,1080 +20 10001908 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:86:34:0,86,993 +20 10001909 . A . . END=10001911 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:93:35:0,93,1395 +20 10001912 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:36:81:36:0,81,1043 +20 10001913 . A . . END=10001915 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:35:90:34:0,90,1350 +20 10001916 . G . . END=10001924 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:81:33:0,81,1215 +20 10001925 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:65:33:0,65,933 +20 10001926 . A . . END=10001928 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:78:31:0,78,1170 +20 10001929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:68:31:0,68,820 +20 10001930 . A . . END=10001931 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:74:30:0,74,825 +20 10001932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:84:31:0,84,1260 +20 10001933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:70:32:0,70,939 +20 10001934 . A . . END=10001936 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:30:0,90,937 +20 10001937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:62:30:0,62,889 +20 10001938 . G . . END=10001939 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:30:0,90,894 +20 10001940 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:82:31:0,82,910 +20 10001941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:93:32:0,93,1395 +20 10001942 . T . . END=10001943 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:84:32:0,84,957 +20 10001944 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:99:34:0,99,1485 +20 10001945 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:86:34:0,86,992 +20 10001946 . A . . END=10001947 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001948 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:88:33:0,88,994 +20 10001949 . A . . END=10001950 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:93:34:0,93,1395 +20 10001951 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:83:34:0,83,996 +20 10001952 . G . . END=10001956 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:90:33:0,90,1350 +20 10001957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:87:33:0,87,990 +20 10001958 . A . . END=10001959 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:33:90:32:0,90,1350 +20 10001960 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:77:32:0,77,960 +20 10001961 . G . . END=10001962 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001963 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:77:31:0,77,887 +20 10001964 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:90:31:0,90,1350 +20 10001965 . T . . END=10001981 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:81:29:0,81,908 +20 10001982 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:90:30:0,90,903 +20 10001983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:29:87:29:0,87,898 +20 10001984 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:90:30:0,90,938 +20 10001985 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:72:30:0,72,930 +20 10001986 . G . . END=10002008 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:81:28:0,81,876 +20 10002009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:78:32:0,78,951 +20 10002010 . T . . END=10002012 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:81:31:0,81,1215 +20 10002013 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:63:32:0,63,980 +20 10002014 . T . . END=10002016 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:87:30:0,87,1305 +20 10002017 . T . . END=10002018 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:32:0,90,1350 +20 10002019 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:85:32:0,85,990 +20 10002020 . T . . END=10002021 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:90:32:0,90,1350 +20 10002022 . A . . END=10002023 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:87:31:0,87,1305 +20 10002024 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:30:78:30:0,78,897 +20 10002025 . A . . END=10002027 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:31:84:30:0,84,1260 +20 10002028 . A . . END=10002030 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:90:32:0,90,1085 +20 10002031 . C . . END=10002042 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:34:99:33:0,99,1025 +20 10002043 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:32:96:32:0,96,1008 +20 10002044 . T . . END=10002048 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:36:99:35:0,102,1124 +20 10002049 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:37:92:37:0,92,1117 +20 10002050 . C . . END=10002057 GT:DP:GQ:MIN_DP:PL ./.:76:99:57:0,120,1800 ./.:38:99:36:0,108,1162 +20 10002058 . T G, . . BaseQRankSum=1.93;ClippingRankSum=0.00;DP=111;ExcessHet=3.01;MQRankSum=3.07;RAW_MQandDP=379806,111;ReadPosRankSum=-5.240e-01 GT:AD:DP:GQ:PL:SB ./.:1,74,0:75:99:2992,216,0,2994,223,3001:1,0,51,23 ./.:0,36,0:36:99:1177,108,0,1177,108,1177:0,0,24,12 +20 10002059 . A . . END=10002062 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:38:0,111,1665 +20 10002063 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:96:38:0,96,1185 +20 10002064 . A . . END=10002068 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:38:0,103,1173 +20 10002069 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:37:98:37:0,98,1126 +20 10002070 . A . . END=10002072 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10002073 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:37:96:37:0,96,1127 +20 10002074 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10002075 . T . . END=10002077 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:96:37:0,96,1440 +20 10002078 . A . . END=10002080 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:36:0,99,1485 +20 10002081 . C . . END=10002085 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:36:96:33:0,96,1440 +20 10002086 . G . . END=10002098 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:36:99:35:0,99,1485 +20 10002099 . C T, . . BaseQRankSum=-2.820e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=339129,102;ReadPosRankSum=-3.600e-01 GT:AD:DP:GQ:PL:SB ./.:27,38,0:65:99:1223,0,844,1304,958,2262:19,8,23,15 ./.:22,14,0:36:99:310,0,563,376,605,982:14,8,10,4 +20 10002100 . T . . END=10002102 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002103 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:32:96:32:0,96,1012 +20 10002104 . T . . END=10002116 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:35:99:33:0,99,1007 +20 10002117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:37:98:37:0,98,1084 +20 10002118 . A . . END=10002129 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:39:99:36:0,101,1104 +20 10002130 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:38:97:38:0,97,1110 +20 10002131 . G . . END=10002137 GT:DP:GQ:MIN_DP:PL ./.:59:99:49:0,120,1800 ./.:37:99:37:0,100,1125 +20 10002138 . C G, . . DP=90;ExcessHet=3.01;RAW_MQandDP=301663,90 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,53,0:53:99:0|1:10002138_C_G:2472,169,0,2472,169,2472:0,0,27,26 ./.:0,37,0:37:99:0|1:10002138_C_G:1642,111,0,1642,111,1642:0,0,27,10 +20 10002139 . A . . END=10002141 GT:DP:GQ:MIN_DP:PL ./.:54:99:52:0,120,1800 ./.:38:99:38:0,102,1530 +20 10002142 . G C, . . DP=89;ExcessHet=3.01;RAW_MQandDP=298063,89 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,52,0:52:99:0|1:10002138_C_G:2436,166,0,2436,166,2436:0,0,24,28 ./.:0,37,0:37:99:0|1:10002138_C_G:1673,114,0,1673,114,1673:0,0,27,10 +20 10002143 . T . . END=10002165 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:99:37:0,102,1530 +20 10002166 . G T, . . BaseQRankSum=-1.674e+00;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.777 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:48:99:42:0,105,1575,105,1575,1575 ./.:38,1,0:39:99:.:0,107,1136,114,1138,1145:25,13,1,0 +20 10002167 . G . . END=10002169 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:99:38:0,102,1530 +20 10002170 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:37:96:37:0,96,1086 +20 10002171 . G . . END=10002192 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:99:36:0,102,1146 +20 10002193 . C . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:39:98:39:0,98,1112 +20 10002194 . C . . END=10002197 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:99:37:0,99,1485 +20 10002198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:38:95:38:0,95,1127 +20 10002199 . A . . END=10002200 GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:37:99:37:0,99,1076 +20 10002201 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:42:0,105,1575 ./.:36:97:36:0,97,1078 +20 10002202 . G . . END=10002203 GT:DP:GQ:MIN_DP:PL ./.:49:96:47:0,96,1440 ./.:36:99:33:0,99,972 +20 10002204 . G . . END=10002212 GT:DP:GQ:MIN_DP:PL ./.:46:99:45:0,99,1485 ./.:36:99:33:0,99,972 +20 10002213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:65:45:0,65,1504 ./.:36:99:33:0,99,972 +20 10002214 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:37:94:37:0,94,1129 +20 10002215 . A . . END=10002220 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:38:99:37:0,108,1620 +20 10002221 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:93:39:0,93,1181 +20 10002222 . A . . END=10002237 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:99:38:0,101,1148 +20 10002238 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:89:39:0,89,1167 +20 10002239 . C . . END=10002404 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:99:37:0,102,1122 +20 10002405 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:92:42:0,92,1151 +20 10002406 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:99:44:0,120,1800 +20 10002407 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:44:82:44:0,82,1208 +20 10002408 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:91:42:0,91,1188 +20 10002409 . G . . END=10002414 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:43:99:42:0,115,1316 +20 10002415 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:55:40:0,55,1048 +20 10002416 . T . . END=10002418 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,100,1291 +20 10002419 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:72:41:0,72,1077 +20 10002420 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,108,1620 +20 10002421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:79:41:0,79,1122 +20 10002422 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:99:39:0,105,1575 +20 10002423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:93:41:0,93,1245 +20 10002424 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:38:82:38:0,82,1041 +20 10002425 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:42:99:42:0,105,1575 +20 10002426 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:39:67:39:0,67,1027 +20 10002427 . T . . END=10002429 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:41:99:40:0,99,1485 +20 10002430 . C . . END=10002433 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:90:39:0,90,1350 +20 10002434 . C . . END=10002439 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:40:81:36:0,81,1215 +20 10002440 . C . . END=10002442 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:36:72:36:0,72,1080 +20 10002443 . T . . END=10002445 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:60:35:0,60,900 +20 10002446 . T . . END=10002448 GT:DP:GQ:MIN_DP:PL ./.:74:99:44:0,102,1530 ./.:35:51:34:0,51,765 +20 10002449 . T . . END=10002450 GT:DP:GQ:MIN_DP:PL ./.:52:90:51:0,90,1350 ./.:34:48:32:0,48,720 +20 10002451 . T . . END=10002453 GT:DP:GQ:MIN_DP:PL ./.:50:81:48:0,81,1215 ./.:35:42:33:0,42,630 +20 10002454 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:81:48:0,81,1215 ./.:36:17:36:0,17,856 +20 10002455 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:72:50:0,72,1080 ./.:36:0:36:0,0,797 +20 10002456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:48:52:0,48,720 ./.:37:30:37:0,30,954 +20 10002457 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:0:52:0,0,1572 ./.:36:0:36:0,0,530 +20 10002458 . G GTT,GTTT,GT,GTTTTT, . . DP=73;ExcessHet=3.01;RAW_MQandDP=221015,73 GT:AD:DP:GQ:PL:SB ./.:0,0,6,6,4,0:16:9:2172,876,730,249,168,82,654,512,0,493,353,254,9,33,214,876,730,168,512,254,730:0,0,12,4 ./.:0,8,4,0,0,0:12:78:1157,165,78,207,0,120,781,162,204,698,781,162,204,698,698,781,162,204,698,698,698:0,0,7,5 +20 10002459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:59:0:59:0,0,1511 ./.:38:0:38:0,0,73 +20 10002460 . T . . END=10002466 GT:DP:GQ:MIN_DP:PL ./.:62:72:61:0,72,1080 ./.:38:66:38:0,66,990 +20 10002467 . T . . END=10002469 GT:DP:GQ:MIN_DP:PL ./.:64:81:63:0,81,1215 ./.:38:66:38:0,66,990 +20 10002470 . C T, . . DP=91;ExcessHet=3.01;RAW_MQandDP=252226,91 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2551,189,0,2551,189,2551:0,0,34,27 ./.:0,30,0:30:93:1256,93,0,1256,93,1256:0,0,17,13 +20 10002471 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:84:63:0,84,1260 ./.:40:72:39:0,72,1080 +20 10002472 . T . . END=10002473 GT:DP:GQ:MIN_DP:PL ./.:63:90:63:0,90,1350 ./.:40:72:39:0,72,1080 +20 10002474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:90:63:0,90,1350 ./.:35:69:33:0,69,1035 +20 10002475 . T . . END=10002477 GT:DP:GQ:MIN_DP:PL ./.:70:99:66:0,102,1530 ./.:35:69:33:0,69,1035 +20 10002478 . A . . END=10002479 GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:30:0:29:0,0,534 +20 10002480 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:29:52:29:0,52,758 +20 10002481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:0:50:0,0,731 ./.:29:70:28:0,70,796 +20 10002482 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:3:46:0,3,1461 ./.:29:70:28:0,70,796 +20 10002483 . A . . . GT:DP:GQ:MIN_DP:PL ./.:45:99:45:0,108,1620 ./.:27:69:27:0,69,724 +20 10002484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:91:42:0,91,1538 ./.:29:78:28:0,78,1170 +20 10002485 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:29:78:28:0,78,1170 +20 10002486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:66:28:0,66,783 +20 10002487 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:27:72:27:0,72,1080 +20 10002488 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:27:44:27:0,44,693 +20 10002489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:64:28:0,64,780 +20 10002490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:56:28:0,56,822 +20 10002491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:72:28:0,72,1080 +20 10002492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:39:0,99,1485 ./.:28:55:28:0,55,706 +20 10002493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:79:36:0,79,1251 ./.:26:25:26:0,25,644 +20 10002494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:28:37:28:0,37,762 +20 10002495 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:28:50:28:0,50,810 +20 10002496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:38:25:0,38,648 +20 10002497 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:63:27:0,63,945 +20 10002498 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:43:27:0,43,723 +20 10002499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:27:47:27:0,47,796 +20 10002500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:26:63:26:0,63,945 +20 10002501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:26:34:26:0,34,727 +20 10002502 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:24:56:24:0,56,702 +20 10002503 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:26:25:0,26,625 +20 10002504 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:25:41:25:0,41,702 +20 10002505 . A . . END=10002506 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:23:66:22:0,66,643 +20 10002507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:22:50:22:0,50,625 +20 10002508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,102,1530 ./.:20:59:20:0,59,596 +20 10002509 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:92:39:0,92,1455 ./.:22:66:22:0,66,672 +20 10002510 . G . . END=10002511 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,105,1575 ./.:22:66:22:0,66,672 +20 10002512 . T . . END=10002513 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,105,1575 ./.:24:71:24:0,71,631 +20 10002514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:38:72:38:0,72,1207 ./.:24:66:22:0,66,642 +20 10002515 . T . . END=10002517 GT:DP:GQ:MIN_DP:PL ./.:39:99:38:0,105,1575 ./.:24:66:22:0,66,642 +20 10002518 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:85:37:0,85,1338 ./.:24:66:22:0,66,642 +20 10002519 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:23:53:23:0,53,685 +20 10002520 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:69:24:0,69,1035 +20 10002521 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:72:24:0,72,738 +20 10002522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:58:25:0,58,728 +20 10002523 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:26:56:26:0,56,766 +20 10002524 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:42:25:0,42,688 +20 10002525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:24:50:24:0,50,650 +20 10002526 . C . . END=10002528 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:74:25:0,74,739 +20 10002529 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:26:60:26:0,60,742 +20 10002530 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:81:27:0,81,830 +20 10002531 . A . . END=10002533 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:75:27:0,75,1125 +20 10002534 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:25:55:25:0,55,703 +20 10002535 . C . . END=10002541 GT:DP:GQ:MIN_DP:PL ./.:37:99:34:0,99,1271 ./.:27:75:25:0,75,753 +20 10002542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:27:75:25:0,75,753 +20 10002543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:25:56:25:0,56,640 +20 10002544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:25:72:24:0,72,742 +20 10002545 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:84:37:0,84,1362 ./.:25:72:24:0,72,742 +20 10002546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:23:69:23:0,69,708 +20 10002547 . T . . END=10002548 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:25:0,72,1080 +20 10002549 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:57:25:0,57,754 +20 10002550 . G . . END=10002551 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:25:0,72,1080 +20 10002552 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:37:25:0,37,679 +20 10002553 . T . . END=10002554 GT:DP:GQ:MIN_DP:PL ./.:36:93:33:0,93,1395 ./.:25:72:24:0,72,753 +20 10002555 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:87:34:0,87,1207 ./.:23:58:23:0,58,663 +20 10002556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:24:54:24:0,54,704 +20 10002557 . A . . END=10002560 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:26:72:24:0,72,688 +20 10002561 . G . . END=10002562 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:28:81:27:0,81,792 +20 10002563 . G . . END=10002564 GT:DP:GQ:MIN_DP:PL ./.:35:84:34:0,84,1260 ./.:27:78:27:0,78,1170 +20 10002565 . G . . END=10002566 GT:DP:GQ:MIN_DP:PL ./.:34:72:33:0,72,1080 ./.:27:78:27:0,78,1170 +20 10002567 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:72:33:0,72,1080 ./.:30:84:30:0,84,1260 +20 10002568 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:30:68:30:0,68,866 +20 10002569 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:26:77:26:0,77,738 +20 10002570 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:30:84:30:0,84,1260 +20 10002571 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:26:78:26:0,78,753 +20 10002572 . C . . . GT:DP:GQ:MIN_DP:PL ./.:37:81:36:0,81,1215 ./.:28:84:28:0,84,735 +20 10002573 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:78:35:0,78,1170 ./.:26:60:26:0,60,650 +20 10002574 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:81:37:0,81,1215 ./.:25:56:25:0,56,648 +20 10002575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:81:37:0,81,1215 ./.:26:62:26:0,62,727 +20 10002576 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:30:87:30:0,87,1305 +20 10002577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:31:90:31:0,90,1350 +20 10002578 . G . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:29:87:29:0,87,871 +20 10002579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:31:90:30:0,90,874 +20 10002580 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:31:90:30:0,90,874 +20 10002581 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:33:73:33:0,73,985 +20 10002582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:33:98:33:0,98,929 +20 10002583 . A . . END=10002586 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10002587 . T . . END=10002601 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:35:90:33:0,90,994 +20 10002602 . T . . END=10002606 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:37:99:37:0,102,1530 +20 10002607 . C . . END=10002616 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:37:90:35:0,90,1055 +20 10002617 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:39:99:39:0,99,1485 +20 10002618 . A . . END=10002624 GT:DP:GQ:MIN_DP:PL ./.:49:99:40:0,102,1530 ./.:35:93:33:0,93,1395 +20 10002625 . G T, . . DP=96;ExcessHet=3.01;RAW_MQandDP=338379,96 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2694,193,0,2694,193,2694:0,0,26,38 ./.:0,32,0:32:96:1029,96,0,1029,96,1029:0,0,17,15 +20 10002626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:85:34:0,85,985 +20 10002627 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002628 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:83:34:0,83,1002 +20 10002629 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:81:34:0,81,1049 +20 10002631 . A . . END=10002633 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:96:33:0,96,1440 +20 10002634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:89:35:0,89,1035 +20 10002635 . A . . END=10002644 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:33:0,99,988 +20 10002645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:92:36:0,92,1109 +20 10002646 . T . . END=10002647 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:99:35:0,102,1530 +20 10002648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:92:35:0,92,1122 +20 10002649 . A . . END=10002663 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:36:0,102,1023 +20 10002664 . G . . END=10002665 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:86:38:0,86,1119 +20 10002666 . G . . END=10002667 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,104,1150 +20 10002668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:81:39:0,81,1136 +20 10002669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,105,1190 +20 10002670 . C . . END=10002671 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:86:40:0,86,1170 +20 10002672 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,100,1142 +20 10002673 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:66:39:0,66,1168 +20 10002674 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,111,1665 +20 10002675 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:75:39:0,75,1092 +20 10002676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,106,1175 +20 10002677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:87:40:0,87,1196 +20 10002678 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:94:40:0,94,1184 +20 10002679 . T . . END=10002681 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:99:39:0,111,1665 +20 10002682 . A . . END=10002683 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:89:39:0,89,1189 +20 10002684 . C . . END=10002685 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:37:0,108,1620 +20 10002686 . C . . END=10002687 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:80:37:0,80,1093 +20 10002688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:38:0,108,1620 +20 10002689 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:85:39:0,85,1171 +20 10002690 . A . . END=10002691 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:99:39:0,108,1271 +20 10002692 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:74:41:0,74,1119 +20 10002693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:99:40:0,111,1665 +20 10002694 . A . . END=10002695 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:92:41:0,92,1125 +20 10002696 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:39:87:39:0,87,1160 +20 10002697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:96:40:0,96,1440 +20 10002698 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:41:85:41:0,85,1227 +20 10002699 . C . . END=10002700 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:43:99:42:0,102,1530 +20 10002701 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:43:88:43:0,88,1263 +20 10002702 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:90:44:0,90,1358 +20 10002703 . A . . END=10002716 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:99:43:0,100,1347 +20 10002717 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:42:81:42:0,81,1158 +20 10002718 . A . . END=10002906 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:44:99:38:0,100,1183 +20 10002907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:40:92:40:0,92,1196 +20 10002908 . C . . END=10002923 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:38:99:36:0,102,1530 +20 10002924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:85:37:0,85,1118 +20 10002925 . A . . END=10002933 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:99:34:0,99,1485 +20 10002934 . C . . END=10002935 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10002936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002937 . A . . END=10002939 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10002940 . C . . END=10002944 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10002945 . C . . END=10002955 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:90:34:0,90,1350 +20 10002956 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:35:80:35:0,80,1102 +20 10002957 . G . . END=10002958 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:93:33:0,93,1395 +20 10002959 . T . . END=10002962 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:87:31:0,87,1305 +20 10002963 . A . . END=10002967 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10002968 . T . . END=10002980 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:99:36:0,99,1196 +20 10002981 . G . . END=10002982 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:90:35:0,90,1350 +20 10002983 . T . . END=10002984 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:87:35:0,87,1305 +20 10002985 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:37:90:37:0,90,1350 +20 10002986 . G . . END=10002992 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:36:81:32:0,81,1215 +20 10002993 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:75:31:0,75,971 +20 10002994 . T . . END=10002998 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:32:84:31:0,84,1260 +20 10002999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:62:31:0,62,908 +20 10003000 . A . . END=10003003 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:31:81:30:0,81,1215 +20 10003004 . C . . END=10003009 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:72:28:0,72,1080 +20 10003010 . G . . END=10003012 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:66:27:0,66,990 +20 10003013 . A . . END=10003015 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:72:28:0,72,1080 +20 10003016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:50:28:0,50,809 +20 10003017 . C . . END=10003019 GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:27:75:27:0,75,1125 +20 10003020 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:52:0,120,1800 ./.:28:81:28:0,81,1215 +20 10003021 . C T, . . DP=87;ExcessHet=3.01;RAW_MQandDP=305979,87 GT:AD:DP:GQ:PL:SB ./.:0,60,0:60:99:2412,181,0,2412,181,2412:0,0,35,25 ./.:0,26,0:26:78:828,78,0,828,78,828:0,0,14,12 +20 10003022 . G . . END=10003024 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:28:84:28:0,84,853 +20 10003025 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:28:66:28:0,66,805 +20 10003026 . T . . END=10003030 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:29:87:29:0,87,889 +20 10003031 . T . . END=10003034 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:30:90:30:0,90,921 +20 10003035 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:29:70:29:0,70,845 +20 10003036 . T . . END=10003050 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:33:0,99,970 +20 10003051 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:88:35:0,88,981 +20 10003052 . C . . END=10003055 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:35:0,105,1040 +20 10003056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:85:36:0,85,1083 +20 10003057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:92:36:0,92,1068 +20 10003058 . A . . END=10003063 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:99:35:0,99,1485 +20 10003064 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:79:36:0,79,1030 +20 10003065 . G . . END=10003071 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:91:35:0,91,1087 +20 10003072 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:34:70:34:0,70,1013 +20 10003073 . A . . END=10003076 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:99:34:0,99,1485 +20 10003077 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:34:79:34:0,79,1002 +20 10003078 . G . . END=10003083 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:93:31:0,93,958 +20 10003084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:73:32:0,73,928 +20 10003085 . G . . END=10003087 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:90:32:0,90,1350 +20 10003088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:32:80:32:0,80,965 +20 10003089 . G . . END=10003099 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:31:90:30:0,90,948 +20 10003100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:88:33:0,88,986 +20 10003101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:33:99:33:0,99,1002 +20 10003102 . T . . END=10003107 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:35:90:32:0,90,1350 +20 10003108 . C . . END=10003110 GT:DP:GQ:MIN_DP:PL ./.:55:99:39:0,99,1485 ./.:36:81:33:0,81,1215 +20 10003111 . C . . END=10003113 GT:DP:GQ:MIN_DP:PL ./.:39:93:39:0,93,1395 ./.:36:81:33:0,81,1215 +20 10003114 . C . . END=10003115 GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:36:81:33:0,81,1215 +20 10003116 . A . . . GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:34:78:34:0,78,1170 +20 10003117 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:35:84:35:0,84,1260 +20 10003118 . C . . END=10003119 GT:DP:GQ:MIN_DP:PL ./.:40:90:39:0,90,1350 ./.:32:75:28:0,75,878 +20 10003120 . G . . END=10003121 GT:DP:GQ:MIN_DP:PL ./.:46:99:46:0,114,1710 ./.:32:75:28:0,75,878 +20 10003122 . C . . . GT:DP:GQ:MIN_DP:PL ./.:47:37:47:0,37,1427 ./.:32:75:28:0,75,878 +20 10003123 . A . . END=10003128 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:75:28:0,75,878 +20 10003129 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:26:53:26:0,53,735 +20 10003130 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:75:28:0,75,1125 +20 10003131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:56:30:0,56,804 +20 10003133 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003134 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:78:29:0,78,1170 +20 10003135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:26:53:26:0,53,727 +20 10003136 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:49:28:0,49,776 +20 10003137 . A . . END=10003142 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:28:78:27:0,78,1170 +20 10003143 . A . . END=10003145 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:84:28:0,84,848 +20 10003146 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:90:30:0,90,906 +20 10003147 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:87:29:0,87,876 +20 10003148 . T . . END=10003149 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:93:32:0,93,987 +20 10003150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:81:32:0,81,953 +20 10003151 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10003152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:83:33:0,83,978 +20 10003153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:87:35:0,87,1041 +20 10003155 . T . . END=10003158 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:33:0,99,998 +20 10003159 . G . . END=10003160 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:87:34:0,87,1009 +20 10003161 . C . . END=10003175 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10003176 . A . . END=10003186 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:81:33:0,81,1215 +20 10003187 . C . . END=10003190 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:93:33:0,93,1395 +20 10003191 . T . . END=10003195 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:99:33:0,99,1006 +20 10003196 . G . . END=10003199 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:93:32:0,93,1395 +20 10003200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:86:33:0,86,931 +20 10003201 . C . . END=10003204 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:93:33:0,93,1395 +20 10003205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:83:34:0,83,1006 +20 10003206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003207 . C . . END=10003210 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:96:32:0,96,912 +20 10003211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:76:34:0,76,989 +20 10003213 . A . . END=10003214 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003215 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:94:35:0,94,1058 +20 10003216 . T . . END=10003217 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:35:0,102,1530 +20 10003218 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:94:35:0,94,1042 +20 10003219 . A . . END=10003230 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:34:99:33:0,99,1001 +20 10003231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:58:33:0,58,921 +20 10003232 . T . . END=10003254 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:38:99:35:0,105,1100 +20 10003255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:38:95:38:0,95,1140 +20 10003256 . C . . END=10003267 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:37:99:36:0,99,1485 +20 10003268 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:85:35:0,85,1071 +20 10003269 . A . . END=10003276 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:99:34:0,99,1094 +20 10003277 . T . . END=10003281 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:93:33:0,93,1052 +20 10003282 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003283 . A . . END=10003286 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:35:90:34:0,90,1350 +20 10003287 . A . . END=10003292 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:33:81:30:0,81,1215 +20 10003293 . C . . END=10003297 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:72:29:0,72,1080 +20 10003298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:54:29:0,54,841 +20 10003299 . T . . END=10003305 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:72:27:0,72,1080 +20 10003306 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10003307 . A . . END=10003309 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:75:29:0,75,1125 +20 10003310 . A . . END=10003316 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10003317 . T . . END=10003321 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:90:31:0,90,1001 +20 10003322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:85:32:0,85,942 +20 10003323 . C . . END=10003327 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003328 . G . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:32:78:32:0,78,950 +20 10003329 . T . . END=10003341 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10003342 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:76:29:0,76,907 +20 10003343 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:29:64:29:0,64,824 +20 10003344 . C . . END=10003347 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:87:29:0,87,914 +20 10003348 . T . . END=10003350 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:30:90:30:0,90,953 +20 10003351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:73:31:0,73,876 +20 10003352 . C . . END=10003354 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003355 . A . . END=10003357 GT:DP:GQ:MIN_DP:PL ./.:88:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10003358 . A C, . . BaseQRankSum=4.000e-03;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=1.01;RAW_MQandDP=321769,90;ReadPosRankSum=-4.440e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,44,0:89:99:.:1483,0,1477,1618,1609,3227:31,14,29,15 ./.:.:31:87:30:0,87,1305,87,1305,1305 +20 10003359 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:30:0,87,1305 +20 10003360 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003361 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:85:32:0,85,976 +20 10003362 . G . . END=10003364 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,954 +20 10003365 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:82:31:0,82,933 +20 10003366 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003367 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:74:31:0,74,892 +20 10003368 . A . . END=10003369 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003370 . A . . END=10003376 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:30:0,90,945 +20 10003377 . A . . END=10003378 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:73:30:0,73,881 +20 10003380 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:87:30:0,87,1305 +20 10003381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:79:30:0,79,942 +20 10003382 . T . . END=10003389 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:80:30:0,80,908 +20 10003390 . G . . END=10003391 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:90:32:0,90,1350 +20 10003392 . C . . END=10003394 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:64:31:0,64,898 +20 10003396 . A . . END=10003401 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:82:29:0,82,909 +20 10003402 . C . . END=10003407 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,947 +20 10003408 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:82:33:0,82,948 +20 10003409 . A . . END=10003418 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:30:0,90,928 +20 10003419 . G . . END=10003420 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:87:30:0,87,882 +20 10003421 . C . . END=10003423 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003424 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:81:31:0,81,951 +20 10003425 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:69:29:0,69,867 +20 10003426 . A . . END=10003435 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:28:0,81,1215 +20 10003436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:60:29:0,60,869 +20 10003437 . C . . END=10003442 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:72:27:0,72,889 +20 10003443 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:67:30:0,67,906 +20 10003444 . C . . END=10003445 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:72:29:0,72,1080 +20 10003446 . G T, . . BaseQRankSum=-8.520e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=104400,29;ReadPosRankSum=-1.061e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:50:0,120,1800,120,1800,1800 ./.:16,11,0:27:99:.:235,0,418,283,451,735:7,9,4,7 +20 10003447 . C . . END=10003449 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:72:28:0,72,1080 +20 10003450 . C . . END=10003457 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:26:62:24:0,62,733 +20 10003458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:57:25:0,57,720 +20 10003459 . C . . END=10003482 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:23:60:21:0,60,596 +20 10003483 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:72:25:0,72,1080 +20 10003484 . C . . END=10003491 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:24:63:23:0,63,709 +20 10003492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:24:55:24:0,55,710 +20 10003493 . T . . END=10003497 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:64:24:0,64,720 +20 10003498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:72:25:0,72,1080 +20 10003499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:25:69:25:0,69,1035 +20 10003500 . C . . END=10003507 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:27:75:26:0,75,822 +20 10003508 . G . . END=10003525 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:28:0,81,871 +20 10003526 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:65:29:0,65,827 +20 10003527 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:29:70:29:0,70,821 +20 10003528 . T . . END=10003538 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:30:81:29:0,81,1215 +20 10003539 . C . . END=10003540 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:31:0,90,1350 +20 10003541 . T . . END=10003542 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003543 . C . . END=10003547 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:87:33:0,87,1305 +20 10003549 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:90:34:0,90,1350 +20 10003550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:71:33:0,71,951 +20 10003551 . T . . END=10003552 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:68:32:0,68,937 +20 10003554 . A . . END=10003563 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:84:31:0,84,878 +20 10003564 . C . . END=10003566 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:30:0,90,902 +20 10003567 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:75:31:0,75,904 +20 10003568 . C . . END=10003570 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:31:90:31:0,90,1350 +20 10003571 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:76:33:0,76,977 +20 10003572 . T . . END=10003574 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:96:32:0,96,995 +20 10003575 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:85:32:0,85,945 +20 10003576 . C . . END=10003578 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:96:32:0,96,975 +20 10003579 . A . . END=10003584 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:99:33:0,99,1023 +20 10003585 . C . . END=10003586 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:96:33:0,96,1440 +20 10003587 . A . . END=10003588 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10003589 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10003590 . T . . END=10003602 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:35:0,99,1485 +20 10003603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:85:35:0,85,989 +20 10003604 . T . . END=10003619 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:35:0,99,1027 +20 10003620 . A . . END=10003621 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:96:35:0,96,1440 +20 10003622 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:87:35:0,87,984 +20 10003623 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:93:35:0,93,1395 +20 10003624 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:81:35:0,81,994 +20 10003625 . C . . END=10003629 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:93:36:0,93,1017 +20 10003630 . A . . END=10003632 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:80:34:0,80,980 +20 10003634 . C . . END=10003635 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10003636 . A . . END=10003639 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:96:34:0,96,1440 +20 10003640 . A . . END=10003641 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:84:34:0,84,1260 +20 10003642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:90:36:0,90,1350 +20 10003643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:88:35:0,88,1003 +20 10003644 . C . . END=10003649 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:90:36:0,90,1350 +20 10003650 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:87:32:0,87,1305 +20 10003651 . T C, . . DP=123;ExcessHet=3.01;RAW_MQandDP=433876,123 GT:AD:DP:GQ:PL:SB ./.:0,93,0:93:99:3649,279,0,3649,279,3649:0,0,32,61 ./.:0,30,0:30:90:931,90,0,931,90,931:0,0,17,13 +20 10003652 . C . . END=10003660 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:84:29:0,84,850 +20 10003661 . T . . END=10003665 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:31:90:30:0,90,930 +20 10003666 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:31:87:31:0,87,1305 +20 10003667 . T . . END=10003668 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:90:32:0,90,1350 +20 10003669 . A . . END=10003672 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:87:32:0,87,994 +20 10003673 . T . . END=10003676 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:90:31:0,90,1350 +20 10003677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:32:62:32:0,62,904 +20 10003678 . C . . END=10003684 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:30:82:30:0,82,956 +20 10003685 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003686 . C . . END=10003687 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:87:33:0,87,1305 +20 10003688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:90:33:0,90,1350 +20 10003689 . T . . END=10003691 GT:DP:GQ:MIN_DP:PL ./.:79:99:70:0,120,1800 ./.:33:84:33:0,84,936 +20 10003692 . A G, . . DP=98;ExcessHet=3.01;RAW_MQandDP=348338,98 GT:AD:DP:GQ:PL:SB ./.:0,68,0:68:99:2638,205,0,2638,205,2638:0,0,25,43 ./.:0,30,0:30:90:909,90,0,909,90,909:0,0,17,13 +20 10003693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:83:34:0,83,1029 +20 10003694 . T . . END=10003696 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:90:31:0,90,1350 +20 10003697 . T . . END=10003698 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:32:87:32:0,87,1305 +20 10003699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:32:90:32:0,90,1350 +20 10003700 . A . . END=10003701 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:30:87:29:0,87,959 +20 10003702 . T . . END=10003704 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:90:33:0,90,1350 +20 10003705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:87:33:0,87,1305 +20 10003706 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:69:34:0,69,1030 +20 10003707 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:85:34:0,85,1037 +20 10003708 . A . . END=10003730 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:90:31:0,90,1350 +20 10003731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:34:99:34:0,99,1485 +20 10003732 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:33:96:33:0,96,1440 +20 10003733 . T . . END=10003831 GT:DP:GQ:MIN_DP:PL ./.:53:99:46:0,111,1665 ./.:44:99:34:0,99,1201 +20 10003832 . G A, . . DP=107;ExcessHet=3.01;RAW_MQandDP=363036,107 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2734,199,0,2734,199,2734:0,0,23,43 ./.:0,41,0:41:99:1271,123,0,1271,123,1271:0,0,19,22 +20 10003833 . T . . END=10003911 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:47:99:41:0,111,1411 +20 10003912 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:96:43:0,96,1254 +20 10003913 . A . . END=10003945 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:38:0,104,1194 +20 10003946 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:97:40:0,97,1211 +20 10003947 . A . . END=10003955 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:39:0,106,1253 +20 10003956 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:91:40:0,91,1153 +20 10003957 . T . . END=10003971 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:99:39:0,104,1184 +20 10003972 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:91:43:0,91,1237 +20 10003973 . G . . END=10003984 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:41:0,104,1220 +20 10003985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:43:97:43:0,97,1279 +20 10003986 . A . . END=10003987 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:42:0,108,1620 +20 10003988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:93:41:0,93,1169 +20 10003989 . A . . END=10004004 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:41:99:39:0,102,1189 +20 10004005 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:38:98:38:0,98,1093 +20 10004006 . A . . END=10004023 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:38:0,100,1199 +20 10004024 . C . . END=10004026 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:38:93:37:0,93,1395 +20 10004027 . T . . END=10004028 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:99:39:0,99,1485 +20 10004029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:40:96:40:0,96,1440 +20 10004030 . T . . END=10004038 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:39:99:37:0,102,1530 +20 10004039 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:36:90:36:0,90,1115 +20 10004040 . G . . END=10004093 GT:DP:GQ:MIN_DP:PL ./.:69:99:43:0,108,1620 ./.:42:99:35:0,102,976 +20 10004094 . A C, . . DP=100;ExcessHet=3.01;RAW_MQandDP=316692,100 GT:AD:DP:GQ:PL:SB ./.:0,53,0:53:99:1854,157,0,1854,157,1854:0,0,35,18 ./.:0,47,0:47:99:1455,140,0,1455,140,1455:0,0,25,22 +20 10004095 . C . . END=10004145 GT:DP:GQ:MIN_DP:PL ./.:52:99:45:0,109,1596 ./.:46:99:40:0,101,1112 +20 10004146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:52:99:45:0,109,1596 ./.:42:98:42:0,98,1111 +20 10004147 . A G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=283262,87 GT:AD:DP:GQ:PL:SB ./.:0,52,0:52:99:1866,156,0,1866,156,1866:0,0,21,31 ./.:0,35,0:35:99:975,103,0,975,103,975:0,0,16,19 +20 10004148 . G . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:91:42:0,91,1201 +20 10004149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:77:42:0,77,1076 +20 10004150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:41:83:41:0,83,1062 +20 10004151 . G . . END=10004155 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:41:99:37:0,111,1003 +20 10004156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:43:71:43:0,71,1172 +20 10004157 . G . . END=10004159 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:43:99:42:0,109,1236 +20 10004160 . T . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:41:76:41:0,76,1083 +20 10004161 . G . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:99:42:0,120,1800 +20 10004162 . C . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:83:42:0,83,1169 +20 10004163 . A . . END=10004164 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:40:99:38:0,114,1141 +20 10004165 . T . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:38:82:38:0,82,1079 +20 10004166 . G . . END=10004169 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:99:40:0,120,1237 +20 10004170 . C . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:39:98:39:0,98,1053 +20 10004171 . G . . END=10004172 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:41:99:40:0,114,1710 +20 10004173 . G . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:84:42:0,84,1144 +20 10004174 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:99:42:0,114,1710 +20 10004175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:42:96:42:0,96,1189 +20 10004176 . C . . END=10004188 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:41:99:36:0,108,1052 +20 10004189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:39:78:39:0,78,1063 +20 10004190 . C . . END=10004192 GT:DP:GQ:MIN_DP:PL ./.:51:99:47:0,112,1687 ./.:40:99:36:0,102,1152 +20 10004193 . G T, . . BaseQRankSum=-5.040e-01;ClippingRankSum=0.00;DP=89;ExcessHet=3.01;MQRankSum=3.42;RAW_MQandDP=186469,53;ReadPosRankSum=0.775 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:23,29,0:52:99:.:947,0,775,1016,860,1876:12,11,12,17 ./.:.:40:99:36:0,102,1152,102,1152,1152 +20 10004194 . C . . END=10004195 GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:40:99:36:0,102,1152 +20 10004196 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:36:84:36:0,84,985 +20 10004197 . G . . END=10004199 GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:37:96:37:0,96,1440 +20 10004200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:39:84:39:0,84,977 +20 10004201 . G . . END=10004202 GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:39:93:38:0,93,1395 +20 10004203 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:37:64:37:0,64,935 +20 10004204 . A . . END=10004206 GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:38:90:38:0,90,1350 +20 10004207 . G . . END=10004209 GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:38:81:35:0,81,1215 +20 10004210 . A . . END=10004211 GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:37:72:37:0,72,1080 +20 10004212 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:37:66:37:0,66,990 +20 10004213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:38:57:38:0,57,855 +20 10004214 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:49:0,102,1530 ./.:38:54:38:0,54,810 +20 10004215 . C . . . GT:DP:GQ:MIN_DP:PL ./.:53:96:53:0,96,1440 ./.:38:57:38:0,57,855 +20 10004216 . T . . . GT:DP:GQ:MIN_DP:PL ./.:53:84:53:0,84,1260 ./.:38:54:38:0,54,810 +20 10004217 . G . . END=10004218 GT:DP:GQ:MIN_DP:PL ./.:53:84:53:0,84,1260 ./.:37:51:36:0,51,765 +20 10004219 . C . . . GT:DP:GQ:MIN_DP:PL ./.:52:72:51:0,72,1080 ./.:34:48:34:0,48,720 +20 10004220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:72:51:0,72,1080 ./.:36:45:36:0,45,675 +20 10004221 . C . . . GT:DP:GQ:MIN_DP:PL ./.:52:72:51:0,72,1080 ./.:36:51:36:0,51,765 +20 10004222 . C CA, . . BaseQRankSum=0.335;ClippingRankSum=0.00;DP=93;ExcessHet=3.01;MQRankSum=-2.042e+00;RAW_MQandDP=198329,55;ReadPosRankSum=-5.200e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:31,8,0:39:50:.:50,0,923,153,952,1105:18,13,4,4 ./.:.:38:0:38:0,0,689,0,689,689 +20 10004223 . A AG, . . BaseQRankSum=0.803;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=1.89;RAW_MQandDP=311685,91;ReadPosRankSum=2.23 GT:AD:DP:GQ:PL:SB ./.:36,11,0:47:85:85,0,982,193,1017,1210:16,20,5,6 ./.:13,8,0:21:99:125,0,211,162,235,398:5,8,5,3 +20 10004224 . A G, . . BaseQRankSum=-3.830e-01;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.609;RAW_MQandDP=324626,95;ReadPosRankSum=1.73 GT:AD:DP:GQ:PL:SB ./.:48,3,0:51:95:0,95,1492,143,1500,1549:20,28,2,1 ./.:11,10,0:21:99:151,0,199,184,228,412:5,6,5,5 +20 10004225 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,114,1710 ./.:40:96:40:0,96,1440 +20 10004226 . A . . END=10004240 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,114,1710 ./.:43:99:41:0,99,1485 +20 10004241 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:0:66:0,0,1965 ./.:42:90:42:0,90,1174 +20 10004242 . A . . END=10004243 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:42:90:42:0,90,1174 +20 10004244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:72:41:0,72,1140 +20 10004245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:42:92:42:0,92,1292 +20 10004246 . A . . END=10004252 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:37:0,99,1485 +20 10004253 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:36:92:36:0,92,1082 +20 10004254 . T . . END=10004258 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:38:0,111,1168 +20 10004259 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:85:40:0,85,1145 +20 10004260 . T . . END=10004271 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:43:99:40:0,115,1234 +20 10004272 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:83:46:0,83,1301 +20 10004273 . T . . END=10004350 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:51:99:44:0,100,1310 +20 10004351 . C G, . . DP=125;ExcessHet=3.01;RAW_MQandDP=441987,125 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2784,211,0,2784,211,2784:0,0,38,32 ./.:0,53,0:53:99:1521,157,0,1521,157,1521:0,0,30,23 +20 10004352 . A . . END=10004388 GT:DP:GQ:MIN_DP:PL ./.:65:99:62:0,120,1800 ./.:58:99:53:0,112,1582 +20 10004389 . T G, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=383170,113;ReadPosRankSum=1.41 GT:AD:DP:GQ:PL:SB ./.:0,62,0:62:99:2523,187,0,2523,187,2523:0,0,25,37 ./.:1,49,0:50:99:1357,138,0,1360,144,1367:1,0,24,25 +20 10004390 . G . . END=10004434 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:49:99:46:0,107,1370 +20 10004435 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:88:46:0,88,1373 +20 10004436 . T . . END=10004446 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:47:99:46:0,106,1414 +20 10004447 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:46:93:46:0,93,1356 +20 10004448 . A . . END=10004454 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:44:99:43:0,99,1349 +20 10004455 . A . . END=10004460 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:43:90:41:0,90,1078 +20 10004461 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:99:41:0,105,1575 +20 10004462 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:84:39:0,84,1207 +20 10004463 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:40:0,105,1575 +20 10004464 . G . . END=10004465 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:82:39:0,82,1135 +20 10004466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:39:0,105,1575 +20 10004467 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:77:40:0,77,1187 +20 10004468 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:66:39:0,66,1159 +20 10004469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:85:39:0,85,1184 +20 10004470 . C . . END=10004472 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:99:37:0,99,1485 +20 10004473 . A . . END=10004474 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:96:37:0,96,1440 +20 10004475 . T . . END=10004510 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:40:99:34:0,99,1114 +20 10004511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:92:39:0,92,1183 +20 10004512 . T . . END=10004525 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:41:99:38:0,102,1242 +20 10004526 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:98:39:0,98,1202 +20 10004527 . A . . END=10004534 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:38:0,99,1182 +20 10004535 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:96:38:0,96,1184 +20 10004536 . T . . END=10004554 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:37:0,100,1115 +20 10004555 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:95:37:0,95,1066 +20 10004556 . A . . END=10004560 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:99:37:0,103,1151 +20 10004561 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:81:38:0,81,1117 +20 10004562 . A . . END=10004568 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:37:93:35:0,93,1395 +20 10004569 . A . . END=10004578 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:39:99:36:0,99,1119 +20 10004579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:38:83:38:0,83,1154 +20 10004580 . T . . END=10004609 GT:DP:GQ:MIN_DP:PL ./.:73:99:58:0,120,1800 ./.:44:99:38:0,111,1209 +20 10004610 . A C, . . DP=134;ExcessHet=3.01;RAW_MQandDP=468605,134 GT:AD:DP:GQ:PL:SB ./.:0,89,0:89:99:3654,267,0,3654,267,3654:0,0,46,43 ./.:0,45,0:45:99:1337,134,0,1337,134,1337:0,0,25,20 +20 10004611 . C . . END=10004691 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:46:99:39:0,100,1230 +20 10004692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:42:93:42:0,93,1281 +20 10004693 . A . . END=10004722 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:46:99:39:0,117,1129 +20 10004723 . T . . END=10004724 GT:DP:GQ:MIN_DP:PL ./.:75:99:64:0,120,1800 ./.:44:93:42:0,93,1395 +20 10004725 . A G, . . BaseQRankSum=-2.154e+00;ClippingRankSum=0.00;DP=107;ExcessHet=3.01;MQRankSum=3.01;RAW_MQandDP=198562,65;ReadPosRankSum=1.79 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,30,0:65:99:.:980,0,1168,1085,1258,2343:10,25,17,13 ./.:.:44:93:42:0,93,1395,93,1395,1395 +20 10004726 . T . . END=10004734 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,105,1575 ./.:44:93:42:0,93,1395 +20 10004735 . C . . END=10004747 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,105,1575 ./.:43:72:39:0,72,1080 +20 10004748 . C . . END=10004755 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,105,1575 ./.:40:81:39:0,81,1215 +20 10004756 . C . . END=10004767 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,105,1575 ./.:41:72:40:0,72,1080 +20 10004768 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,105,1575 ./.:40:66:40:0,66,990 +20 10004769 . TAAAACTATGC T, . . BaseQRankSum=1.60;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=353426,117;ReadPosRankSum=2.22 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004770 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004771 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004772 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004773 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004774 . C *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004775 . T *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004776 . A *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004777 . T *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004778 . G *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004779 . C *, . . DP=117 GT:AD:DP:GQ:PL:SB ./.:37,27,0:64:99:1019,0,1471,1130,1554,2684:14,23,7,20 ./.:18,14,0:32:99:535,0,1946,589,1990,2578:9,9,7,7 +20 10004780 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:0:70:0,0,795 ./.:40:0:40:0,0,277 +20 10004781 . A . . END=10004782 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:99:40:0,111,1665 +20 10004783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:44:40:0,44,1109 +20 10004784 . C . . END=10004786 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:99:40:0,106,1181 +20 10004787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:40:66:40:0,66,1173 +20 10004788 . G . . END=10004873 GT:DP:GQ:MIN_DP:PL ./.:77:99:69:0,120,1800 ./.:49:99:40:0,99,1277 +20 10004874 . A C, . . DP=134;ExcessHet=3.01;RAW_MQandDP=475423,134 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,87,0:87:99:0|1:10004874_A_C:3631,261,0,3631,261,3631:0,0,54,33 ./.:0,47,0:47:99:0|1:10004874_A_C:1744,141,0,1744,141,1744:0,0,22,25 +20 10004875 . T . . END=10004886 GT:DP:GQ:MIN_DP:PL ./.:86:99:85:0,120,1800 ./.:51:99:49:0,115,1498 +20 10004887 . A G, . . BaseQRankSum=0.356;ClippingRankSum=0.00;DP=135;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=477723,135;ReadPosRankSum=2.05 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:45,40,0:85:99:0|1:10004874_A_C:1352,0,1542,1487,1662,3149:24,21,24,16 ./.:27,21,0:48:99:0|1:10004874_A_C:511,0,709,592,771,1363:14,13,11,10 +20 10004888 . A . . END=10005009 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:50:99:44:0,108,1306 +20 10005010 . C T, . . DP=117;ExcessHet=3.01;RAW_MQandDP=418441,117 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2963,217,0,2963,217,2963:0,0,44,28 ./.:0,43,0:43:99:1366,129,0,1366,129,1366:0,0,21,22 +20 10005011 . G . . END=10005023 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:50:99:49:0,120,1800 +20 10005024 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:50:87:50:0,87,1434 +20 10005025 . T . . END=10005163 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:53:99:45:0,119,1471 +20 10005164 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:46:96:46:0,96,1285 +20 10005165 . C . . END=10005204 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:46:99:41:0,111,1196 +20 10005205 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:43:95:43:0,95,1227 +20 10005206 . A . . END=10005426 GT:DP:GQ:MIN_DP:PL ./.:72:99:51:0,120,1800 ./.:54:99:43:0,117,1344 +20 10005427 . C T, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=375241,105;ReadPosRankSum=-7.250e-01 GT:AD:DP:GQ:PL:SB ./.:0,55,0:55:99:2243,165,0,2243,165,2243:0,0,27,28 ./.:1,48,0:49:99:1493,136,0,1496,143,1503:1,0,24,24 +20 10005428 . A . . END=10005498 GT:DP:GQ:MIN_DP:PL ./.:71:99:58:0,120,1800 ./.:52:99:47:0,120,1800 +20 10005499 . A G, . . DP=129;ExcessHet=3.01;RAW_MQandDP=464400,129 GT:AD:DP:GQ:PL:SB ./.:0,76,0:76:99:3082,229,0,3082,229,3082:0,0,45,31 ./.:0,52,0:52:99:1645,155,0,1645,155,1645:0,0,26,26 +20 10005500 . T . . END=10005586 GT:DP:GQ:MIN_DP:PL ./.:71:99:66:0,120,1800 ./.:49:99:42:0,109,1334 +20 10005587 . A G, . . BaseQRankSum=-8.340e-01;ClippingRankSum=0.00;DP=115;ExcessHet=3.01;MQRankSum=-9.720e-01;RAW_MQandDP=257810,73;ReadPosRankSum=0.649 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,36,0:72:99:.:1258,0,1236,1366,1345,2710:19,17,16,20 ./.:.:49:99:42:0,109,1334,109,1334,1334 +20 10005588 . A . . END=10005619 GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:49:99:42:0,109,1334 +20 10005620 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:45:96:45:0,96,1306 +20 10005621 . T . . END=10005722 GT:DP:GQ:MIN_DP:PL ./.:83:99:73:0,120,1800 ./.:50:99:41:0,114,1274 +20 10005723 . A G, . . DP=137;ExcessHet=3.01;RAW_MQandDP=490969,137 GT:AD:DP:GQ:PL:SB ./.:0,86,0:86:99:3091,258,0,3091,258,3091:0,0,48,38 ./.:0,51,0:51:99:1437,152,0,1437,152,1437:0,0,29,22 +20 10005724 . A . . END=10006063 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:52:99:38:0,99,1164 +20 10006064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:41:80:41:0,80,1121 +20 10006065 . T . . END=10006069 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:43:99:42:0,120,1800 +20 10006070 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:42:94:42:0,94,1159 +20 10006071 . A . . END=10006111 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:40:99:34:0,99,1256 +20 10006112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:78:35:0,78,1060 +20 10006113 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:88:35:0,88,1059 +20 10006114 . A . . END=10006120 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10006121 . T . . END=10006126 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:93:34:0,93,1395 +20 10006127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:86:34:0,86,1038 +20 10006128 . T . . END=10006131 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10006132 . A . . END=10006135 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:35:0,102,1530 +20 10006136 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:90:35:0,90,1030 +20 10006137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10006138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:88:35:0,88,1060 +20 10006139 . C . . END=10006142 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:34:0,99,1485 +20 10006143 . A . . END=10006148 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:36:93:35:0,93,1395 +20 10006149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:87:35:0,87,1305 +20 10006150 . G . . END=10006158 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:90:33:0,90,1350 +20 10006159 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:34:83:34:0,83,1005 +20 10006160 . A . . END=10006164 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:33:90:32:0,90,1350 +20 10006165 . C . . END=10006189 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:34:0,99,1038 +20 10006190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:38:96:38:0,96,1141 +20 10006191 . G . . END=10006202 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:38:99:35:0,99,1485 +20 10006203 . A . . END=10006210 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:93:32:0,93,1395 +20 10006211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10006212 . G . . END=10006214 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10006215 . T . . END=10006218 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10006219 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:91:37:0,91,1054 +20 10006220 . G . . END=10006222 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:99:36:0,102,1530 +20 10006223 . A . . END=10006224 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:37:96:36:0,96,1440 +20 10006225 . A . . END=10006290 GT:DP:GQ:MIN_DP:PL ./.:82:99:53:0,120,1800 ./.:52:99:37:0,99,1162 +20 10006291 . G A, . . BaseQRankSum=0.311;ClippingRankSum=0.00;DP=121;ExcessHet=3.01;MQRankSum=-1.081e+00;RAW_MQandDP=295179,84;ReadPosRankSum=-1.614e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:53,31,0:84:99:.:1007,0,1905,1167,1998,3165:25,28,16,15 ./.:.:52:99:37:0,99,1162,99,1162,1162 +20 10006292 . A . . END=10006383 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:52:99:37:0,99,1162 +20 10006384 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:43:89:43:0,89,1158 +20 10006385 . A . . END=10006403 GT:DP:GQ:MIN_DP:PL ./.:81:99:76:0,120,1800 ./.:45:99:40:0,102,1530 +20 10006404 . A C, . . BaseQRankSum=1.72;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=402651,114;ReadPosRankSum=-5.390e-01 GT:AD:DP:GQ:PL:SB ./.:0,76,0:76:99:2957,228,0,2957,228,2957:0,0,27,49 ./.:1,36,0:37:99:1061,100,0,1064,107,1071:0,1,15,21 +20 10006405 . C . . END=10006410 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:40:99:38:0,102,1159 +20 10006411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:80:38:0,80,1080 +20 10006412 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:75:38:0,75,1050 +20 10006413 . C . . END=10006428 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:40:99:38:0,110,1191 +20 10006429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:84:38:0,84,1131 +20 10006430 . A . . END=10006446 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:99:37:0,102,1530 +20 10006447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:83:39:0,83,1144 +20 10006448 . A . . END=10006455 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:99:38:0,105,1575 +20 10006456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:98:38:0,98,1165 +20 10006457 . A . . END=10006464 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:38:0,99,1154 +20 10006465 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:39:98:39:0,98,1163 +20 10006466 . G . . END=10006476 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:38:99:36:0,99,1127 +20 10006477 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:37:94:37:0,94,1083 +20 10006478 . A . . END=10006673 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:46:99:37:0,106,1199 +20 10006674 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:42:93:42:0,93,1255 +20 10006675 . C . . END=10006681 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,120,1800 ./.:45:99:44:0,120,1800 +20 10006682 . T A, . . DP=120;ExcessHet=3.01;RAW_MQandDP=426326,120 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2903,219,0,2903,219,2903:0,0,44,29 ./.:0,46,0:46:99:1399,137,0,1399,137,1399:0,0,26,20 +20 10006683 . A . . END=10006756 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:44:99:38:0,100,1074 +20 10006757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:39:96:39:0,96,1139 +20 10006758 . A . . END=10006774 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:40:99:38:0,99,1196 +20 10006775 . T . . END=10006780 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:40:90:39:0,90,1350 +20 10006781 . C . . END=10006783 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:38:81:37:0,81,1215 +20 10006784 . T . . END=10006789 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:39:72:37:0,72,1080 +20 10006790 . T . . END=10006799 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:40:60:36:0,60,900 +20 10006800 . A . . END=10006804 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:40:57:40:0,57,855 +20 10006805 . G . . END=10006806 GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:40:54:40:0,54,810 +20 10006807 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:61:0,99,1485 ./.:41:48:41:0,48,720 +20 10006808 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:78:75:0,78,1170 ./.:38:45:38:0,45,675 +20 10006809 . C . . END=10006810 GT:DP:GQ:MIN_DP:PL ./.:76:60:75:0,60,900 ./.:42:39:42:0,39,585 +20 10006811 . A . . END=10006813 GT:DP:GQ:MIN_DP:PL ./.:76:60:75:0,60,900 ./.:43:42:41:0,42,630 +20 10006814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:57:79:0,57,855 ./.:43:42:41:0,42,630 +20 10006815 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:51:80:0,51,765 ./.:42:39:42:0,39,585 +20 10006816 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:45:80:0,45,675 ./.:42:30:42:0,30,450 +20 10006817 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:33:80:0,33,495 ./.:42:30:42:0,30,450 +20 10006818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:30:77:0,30,450 ./.:42:24:42:0,24,360 +20 10006819 . AAAAC A, . . DP=115;ExcessHet=3.01;RAW_MQandDP=425700,115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006820 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006821 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006822 . A *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006823 . C *, . . DP=115 GT:AD:DP:GQ:PL:SB ./.:0,58,0:58:99:2569,176,0,2569,176,2569:0,0,30,28 ./.:0,29,0:29:88:1258,88,0,1258,88,1258:0,0,10,19 +20 10006824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:0:75:0,0,0 ./.:43:0:43:0,0,0 +20 10006825 . A . . END=10006826 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:44:93:43:0,93,1395 +20 10006827 . C . . END=10006846 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:41:0,99,1237 +20 10006847 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:77:42:0,77,1173 +20 10006848 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:42:0,120,1800 +20 10006849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:89:41:0,89,1203 +20 10006850 . A . . END=10006888 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:38:0,106,1163 +20 10006889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:95:42:0,95,1261 +20 10006890 . A . . END=10006891 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,107,1197 +20 10006892 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:68:42:0,68,1168 +20 10006893 . A . . END=10006899 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:38:0,114,1189 +20 10006900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:38:97:38:0,97,1147 +20 10006901 . C . . END=10006912 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:38:0,111,1665 +20 10006913 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:79:39:0,79,1123 +20 10006914 . A . . END=10006916 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:99:38:0,102,1134 +20 10006917 . G . . END=10006918 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:38:96:38:0,96,1117 +20 10006919 . A . . END=10006924 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:39:0,105,1189 +20 10006925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:98:42:0,98,1267 +20 10006926 . A . . END=10006928 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:42:0,114,1710 +20 10006929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:96:42:0,96,1257 +20 10006930 . A . . END=10006943 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:41:0,111,1263 +20 10006944 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:91:40:0,91,1121 +20 10006945 . T . . END=10007001 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:44:99:38:0,105,1400 +20 10007002 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:92:39:0,92,1168 +20 10007003 . T . . END=10007038 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:38:0,102,1241 +20 10007039 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:97:43:0,97,1320 +20 10007040 . G . . END=10007042 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:43:99:42:0,117,1755 +20 10007043 . G A, . . BaseQRankSum=2.41;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=0.482 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:59:0,120,1800,120,1800,1800 ./.:14,27,0:41:99:.:752,0,298,794,379,1174:7,7,17,10 +20 10007044 . G . . END=10007079 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:38:0,101,1168 +20 10007080 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:98:39:0,98,1144 +20 10007081 . G . . END=10007083 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:99:38:0,105,1575 +20 10007084 . A . . END=10007087 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:39:96:38:0,96,1440 +20 10007088 . A . . END=10007097 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:37:99:33:0,99,1088 +20 10007098 . A . . END=10007105 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:90:33:0,90,1350 +20 10007106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:35:88:35:0,88,1119 +20 10007107 . G . . END=10007110 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:93:33:0,93,1395 +20 10007111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:34:99:34:0,99,1485 +20 10007112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:80:33:0,80,1041 +20 10007113 . G . . END=10007114 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:99:33:0,99,1063 +20 10007115 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:32:96:32:0,96,983 +20 10007116 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:99:33:0,99,983 +20 10007117 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:98:33:0,98,1002 +20 10007118 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:33:82:33:0,82,1028 +20 10007119 . C . . END=10007127 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:36:99:33:0,99,1031 +20 10007128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:94:41:0,94,1227 +20 10007129 . G . . END=10007130 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,120,1800 +20 10007131 . T . . END=10007132 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:95:41:0,95,1219 +20 10007133 . G . . END=10007135 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:40:0,104,1210 +20 10007136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:90:40:0,90,1207 +20 10007137 . A . . END=10007140 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:40:99:39:0,102,1206 +20 10007141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:98:41:0,98,1296 +20 10007142 . G . . END=10007146 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:99:41:0,114,1710 +20 10007147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:41:76:41:0,76,1165 +20 10007148 . C . . END=10007149 GT:DP:GQ:MIN_DP:PL ./.:77:99:59:0,120,1800 ./.:42:99:41:0,114,1710 +20 10007150 . G C, . . BaseQRankSum=-2.939e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=374400,104;ReadPosRankSum=-1.600e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:38,25,0:63:99:0|1:10007150_G_C:698,0,1479,813,1554,2366:16,22,14,11 ./.:29,11,0:40:99:.:.:199,0,798,286,831,1118:19,10,7,4 +20 10007151 . G . . END=10007167 GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:41:99:37:0,102,1530 +20 10007168 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:38:97:38:0,97,1133 +20 10007169 . T . . END=10007174 GT:DP:GQ:MIN_DP:PL ./.:57:99:56:0,120,1800 ./.:37:99:36:0,100,1079 +20 10007175 . C T, . . BaseQRankSum=2.25;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=1.32;RAW_MQandDP=216841,61;ReadPosRankSum=-7.300e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:23,38,0:61:99:.:1|0:10007150_G_C:1379,0,780,1448,894,2343:9,14,18,20 ./.:.:37:89:37:.:.:0,89,1076,89,1076,1076 +20 10007176 . T . . END=10007190 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:38:99:36:0,99,1138 +20 10007191 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:39:86:39:0,86,1084 +20 10007192 . A . . END=10007193 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:99:39:0,106,1159 +20 10007194 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:93:37:0,93,1080 +20 10007195 . G . . END=10007233 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:38:99:35:0,99,1001 +20 10007234 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:98:37:0,98,1098 +20 10007235 . C . . END=10007255 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:34:0,99,1028 +20 10007256 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:91:36:0,91,1012 +20 10007257 . C . . END=10007266 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:99:37:0,102,1132 +20 10007267 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:96:40:0,96,1440 +20 10007268 . G . . END=10007275 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:40:99:39:0,99,1485 +20 10007276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:92:36:0,92,1087 +20 10007277 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:36:0,99,1485 +20 10007278 . T . . END=10007286 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:93:33:0,93,1027 +20 10007287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:37:99:37:0,99,1485 +20 10007288 . G . . END=10007291 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:93:35:0,93,1395 +20 10007292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:89:35:0,89,1063 +20 10007293 . C . . END=10007305 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:34:90:31:0,90,995 +20 10007306 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:33:87:33:0,87,1041 +20 10007307 . G . . END=10007313 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:33:93:33:0,93,1395 +20 10007314 . A . . END=10007322 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:35:0,99,1485 +20 10007323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:79:36:0,79,1012 +20 10007324 . A . . END=10007334 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:33:0,99,1051 +20 10007335 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:97:36:0,97,1036 +20 10007336 . C . . END=10007337 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:99:34:0,102,1051 +20 10007338 . C . . END=10007341 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:35:93:34:0,93,1395 +20 10007342 . C . . END=10007350 GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:36:99:36:0,99,1485 +20 10007351 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:99:47:0,119,1671 ./.:34:85:34:0,85,998 +20 10007352 . C T, . . DP=107;ExcessHet=3.01;RAW_MQandDP=382441,107 GT:AD:DP:GQ:PL:SB ./.:0,69,0:69:99:2793,208,0,2793,208,2793:0,0,29,40 ./.:0,37,0:37:99:1150,110,0,1150,110,1150:0,0,10,27 +20 10007353 . A . . END=10007376 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:37:99:37:0,102,1530 +20 10007377 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:36:81:36:0,81,1069 +20 10007378 . T . . END=10007388 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:37:99:36:0,102,1131 +20 10007389 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:38:88:38:0,88,1139 +20 10007390 . A . . END=10007419 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:40:99:37:0,102,1241 +20 10007420 . T C, . . BaseQRankSum=-3.784e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=1.03 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:99:58:0,120,1800,120,1800,1800 ./.:18,19,0:37:99:.:412,0,447,466,504,970:12,6,6,13 +20 10007421 . G . . END=10007456 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:42:99:37:0,103,1174 +20 10007457 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:39:90:39:0,90,1201 +20 10007458 . C . . END=10007465 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:42:99:41:0,106,1195 +20 10007466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:41:98:41:0,98,1248 +20 10007467 . A . . END=10007491 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:45:99:39:0,105,1226 +20 10007492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:45:98:45:0,98,1302 +20 10007493 . A . . END=10007530 GT:DP:GQ:MIN_DP:PL ./.:75:99:58:0,120,1800 ./.:46:99:43:0,115,1290 +20 10007531 . A G, . . DP=116;ExcessHet=3.01;RAW_MQandDP=415369,116 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2949,217,0,2949,217,2949:0,0,48,24 ./.:0,43,0:43:99:1228,127,0,1228,127,1228:0,0,29,14 +20 10007532 . G . . END=10007574 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:41:0,108,1304 +20 10007575 . C T, . . BaseQRankSum=-2.490e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=-8.910e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:65:0,120,1800,120,1800,1800 ./.:17,20,0:37:99:.:500,0,413,551,473,1024:11,6,11,9 +20 10007576 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:91:41:0,91,1178 +20 10007577 . C . . END=10007581 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:44:99:40:0,113,1265 +20 10007582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:43:95:43:0,95,1258 +20 10007583 . C . . END=10007612 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:43:99:39:0,100,1172 +20 10007613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:97:38:0,97,1117 +20 10007614 . A . . END=10007620 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:37:0,99,1485 +20 10007621 . A . . END=10007628 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:90:32:0,90,1350 +20 10007629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:86:36:0,86,1059 +20 10007630 . A . . END=10007631 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:92:36:0,92,1148 +20 10007632 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:80:37:0,80,1113 +20 10007633 . A . . END=10007634 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:34:90:34:0,90,1350 +20 10007635 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:35:89:35:0,89,1036 +20 10007636 . C . . END=10007639 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:35:90:35:0,90,1350 +20 10007640 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:34:87:34:0,87,1305 +20 10007641 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:93:36:0,93,1395 +20 10007642 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10007643 . A . . END=10007644 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:93:37:0,93,1395 +20 10007645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10007646 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:96:37:0,96,1440 +20 10007647 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:38:99:38:0,99,1485 +20 10007648 . G . . END=10007649 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:36:96:34:0,96,1440 +20 10007650 . C . . END=10007652 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:99:37:0,99,1485 +20 10007653 . A . . END=10007654 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:37:93:36:0,93,1395 +20 10007655 . G . . END=10007659 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:99:38:0,99,1485 +20 10007660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:98:39:0,98,1176 +20 10007661 . A . . END=10007691 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:40:99:38:0,100,1184 +20 10007692 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:42:98:42:0,98,1251 +20 10007693 . C . . END=10007834 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:41:0,103,1287 +20 10007835 . T C, . . BaseQRankSum=-4.583e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=0.073 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:65:0,120,1800,120,1800,1800 ./.:15,24,0:39:99:.:539,0,382,584,453,1038:3,12,13,11 +20 10007836 . G . . END=10007863 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:99:38:0,105,1159 +20 10007864 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:41:93:41:0,93,1177 +20 10007865 . A . . END=10007875 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:39:99:38:0,105,1165 +20 10007876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:40:89:40:0,89,1205 +20 10007877 . A . . END=10007959 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:46:99:40:0,106,1315 +20 10007960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:47:96:47:0,96,1409 +20 10007961 . T . . END=10007979 GT:DP:GQ:MIN_DP:PL ./.:80:99:65:0,120,1800 ./.:47:99:46:0,117,1413 +20 10007980 . A C, . . DP=133;ExcessHet=3.01;RAW_MQandDP=486600,133 GT:AD:DP:GQ:PL:SB ./.:0,90,0:90:99:3553,270,0,3553,270,3553:0,0,39,51 ./.:0,43,0:43:99:1307,128,0,1307,128,1307:0,0,19,24 +20 10007981 . A . . END=10007982 GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:46:99:46:0,105,1575 +20 10007983 . C . . END=10007985 GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:45:93:45:0,93,1395 +20 10007986 . A . . END=10007994 GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:45:84:44:0,84,1260 +20 10007995 . G . . END=10007998 GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:43:72:43:0,72,1080 +20 10007999 . G . . END=10008008 GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:43:60:41:0,60,900 +20 10008009 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:46:57:46:0,57,855 +20 10008010 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:46:48:46:0,48,720 +20 10008011 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:46:45:46:0,45,675 +20 10008012 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:46:42:46:0,42,630 +20 10008013 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:81:0,99,1485 ./.:47:45:47:0,45,675 +20 10008014 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:90:85:0,90,1350 ./.:47:42:47:0,42,630 +20 10008015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:87:88:0,87,1305 ./.:46:39:46:0,39,585 +20 10008016 . A . . END=10008017 GT:DP:GQ:MIN_DP:PL ./.:90:72:89:0,72,1080 ./.:46:27:46:0,27,405 +20 10008018 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:72:89:0,72,1080 ./.:45:24:45:0,24,360 +20 10008019 . T . . END=10008020 GT:DP:GQ:MIN_DP:PL ./.:90:72:89:0,72,1080 ./.:43:21:41:0,21,315 +20 10008021 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:54:86:0,54,810 ./.:41:18:41:0,18,270 +20 10008022 . A . . END=10008023 GT:DP:GQ:MIN_DP:PL ./.:85:33:85:0,33,495 ./.:44:12:44:0,12,180 +20 10008024 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:9:86:0,9,135 ./.:46:9:46:0,9,135 +20 10008025 . A . . END=10008026 GT:DP:GQ:MIN_DP:PL ./.:87:9:86:0,9,135 ./.:48:12:47:0,12,180 +20 10008027 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:9:86:0,9,135 ./.:47:15:47:0,15,225 +20 10008028 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:9:86:0,9,135 ./.:49:18:49:0,18,270 +20 10008029 . T TA,TAA, . . BaseQRankSum=0.409;ClippingRankSum=0.00;DP=130;ExcessHet=3.01;MQRankSum=0.576;RAW_MQandDP=478451,130;ReadPosRankSum=-1.055e+00 GT:AD:DP:GQ:PL:SB ./.:3,72,0,0:75:99:2024,145,0,2033,222,2110,2033,222,2110,2110:1,2,27,45 ./.:0,17,22,0:39:99:1244,629,524,416,0,337,1157,615,414,1113:0,0,17,22 +20 10008030 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:0:91:0,0,0 ./.:47:0:47:0,0,0 +20 10008031 . A . . END=10008032 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:48:82:47:0,82,1361 +20 10008033 . A . . END=10008038 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:49:99:47:0,120,1800 +20 10008039 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:44:26:44:0,26,1086 +20 10008040 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:45:99:45:0,113,1254 +20 10008041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:44:70:44:0,70,1165 +20 10008042 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:39:98:39:0,98,1105 +20 10008043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:45:99:45:0,120,1800 +20 10008044 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:39:67:39:0,67,1007 +20 10008045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:42:96:42:0,96,1233 +20 10008046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:41:88:41:0,88,1166 +20 10008047 . A . . END=10008101 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:46:99:41:0,103,1214 +20 10008102 . A . . END=10008103 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:45:90:45:0,90,1350 +20 10008104 . A . . END=10008106 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:44:84:40:0,84,1260 +20 10008107 . A . . END=10008111 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:43:72:41:0,72,1080 +20 10008112 . T . . END=10008116 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:44:60:43:0,60,900 +20 10008117 . C . . END=10008120 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:47:54:46:0,54,810 +20 10008121 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:49:51:49:0,51,765 +20 10008122 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:49:48:49:0,48,720 +20 10008123 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:48:45:48:0,45,675 +20 10008124 . T . . END=10008127 GT:DP:GQ:MIN_DP:PL ./.:82:99:77:0,105,1575 ./.:48:42:47:0,42,630 +20 10008128 . T . . END=10008129 GT:DP:GQ:MIN_DP:PL ./.:79:93:78:0,93,1395 ./.:49:39:48:0,39,585 +20 10008130 . T . . END=10008131 GT:DP:GQ:MIN_DP:PL ./.:78:78:77:0,78,1170 ./.:49:27:44:0,27,405 +20 10008132 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:60:76:0,60,900 ./.:49:27:44:0,27,405 +20 10008133 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:60:76:0,60,900 ./.:50:21:48:0,21,315 +20 10008134 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:54:79:0,54,810 ./.:50:21:48:0,21,315 +20 10008135 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:48:79:0,48,720 ./.:50:21:48:0,21,315 +20 10008136 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:24:78:0,24,360 ./.:50:21:48:0,21,315 +20 10008137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:21:76:0,21,315 ./.:50:21:48:0,21,315 +20 10008138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:21:76:0,21,315 ./.:50:18:50:0,18,270 +20 10008139 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:21:76:0,21,315 ./.:53:15:53:0,15,225 +20 10008140 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:18:78:0,18,270 ./.:55:9:55:0,9,135 +20 10008141 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:9:79:0,9,135 ./.:55:6:54:0,6,90 +20 10008142 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:6:77:0,6,90 ./.:55:6:54:0,6,90 +20 10008143 . C . . END=10008145 GT:DP:GQ:MIN_DP:PL ./.:77:3:76:0,3,45 ./.:53:0:51:0,0,0 +20 10008146 . TA T, . . DP=121;ExcessHet=3.01;RAW_MQandDP=442100,121 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 ./.:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008147 . A *, . . DP=121 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 ./.:0,44,0:44:99:1368,132,0,1368,132,1368:0,0,23,21 +20 10008148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:0:74:0,0,0 ./.:55:0:55:0,0,0 +20 10008149 . A . . END=10008180 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:51:99:46:0,120,1800 +20 10008181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:46:88:46:0,88,1297 +20 10008182 . A . . END=10008194 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:44:99:43:0,103,1289 +20 10008195 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:43:94:43:0,94,1201 +20 10008196 . T . . END=10008197 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:44:99:44:0,102,1530 +20 10008198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:42:98:42:0,98,1236 +20 10008199 . A . . END=10008203 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:41:99:39:0,102,1530 +20 10008204 . A . . END=10008205 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:39:90:38:0,90,1166 +20 10008206 . T . . END=10008208 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:39:99:38:0,105,1198 +20 10008209 . T . . END=10008210 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:39:96:38:0,96,1440 +20 10008211 . A . . END=10008217 GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:43:99:40:0,99,1240 +20 10008218 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:40:96:40:0,96,1244 +20 10008219 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:43:86:43:0,86,1222 +20 10008220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:74:0,120,1800 ./.:43:77:43:0,77,1143 +20 10008221 . T C, . . DP=116;ExcessHet=3.01;RAW_MQandDP=420569,116 GT:AD:DP:GQ:PL:SB ./.:0,80,0:80:99:3253,240,0,3253,240,3253:0,0,43,37 ./.:0,36,0:36:99:1039,106,0,1039,106,1039:0,0,20,16 +20 10008222 . T . . END=10008245 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:46:99:42:0,105,1268 +20 10008246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:47:91:47:0,91,1314 +20 10008247 . T . . END=10008388 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:57:99:47:0,110,1465 +20 10008389 . A G, . . BaseQRankSum=-3.469e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=205200,57;ReadPosRankSum=0.498 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:99:45:0,108,1620,108,1620,1620 ./.:26,29,0:55:99:.:674,0,697,752,783,1535:17,9,14,15 +20 10008390 . T . . END=10008457 GT:DP:GQ:MIN_DP:PL ./.:64:99:45:0,108,1620 ./.:59:99:48:0,119,1721 +20 10008458 . T G, . . DP=118;ExcessHet=3.01;RAW_MQandDP=366011,118 GT:AD:DP:GQ:PL:SB ./.:0,69,0:69:99:2683,207,0,2683,207,2683:0,0,30,39 ./.:0,46,0:46:99:1398,138,0,1398,138,1398:0,0,24,22 +20 10008459 . A . . END=10008625 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:47:99:41:0,107,1140 +20 10008626 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:48:86:48:0,86,1316 +20 10008627 . A . . END=10008707 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:44:99:41:0,99,1095 +20 10008708 . A . . END=10008709 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:42:96:42:0,96,1440 +20 10008710 . C . . END=10008711 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:41:99:41:0,99,1485 +20 10008712 . A . . END=10008715 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:43:90:41:0,90,1350 +20 10008716 . C . . END=10008725 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:40:84:38:0,84,1260 +20 10008726 . A . . END=10008731 GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:39:72:39:0,72,1080 +20 10008732 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:40:0,105,1575 ./.:40:60:37:0,60,900 +20 10008733 . T . . END=10008737 GT:DP:GQ:MIN_DP:PL ./.:47:90:47:0,90,1350 ./.:40:60:37:0,60,900 +20 10008738 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:81:49:0,81,1215 ./.:40:51:40:0,51,765 +20 10008739 . C . . END=10008740 GT:DP:GQ:MIN_DP:PL ./.:50:81:49:0,81,1215 ./.:41:48:38:0,48,720 +20 10008741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:52:78:52:0,78,1170 ./.:41:48:38:0,48,720 +20 10008742 . G T, . . BaseQRankSum=3.89;ClippingRankSum=0.00;DP=84;ExcessHet=3.01;MQRankSum=-1.113e+00;RAW_MQandDP=188475,84;ReadPosRankSum=0.772 GT:AD:DP:GQ:PL:SB ./.:23,26,0:49:99:744,0,580,813,658,1471:10,13,11,15 ./.:13,20,0:33:99:542,0,265,581,325,907:7,6,10,10 +20 10008743 . T . . END=10008744 GT:DP:GQ:MIN_DP:PL ./.:52:72:52:0,72,1080 ./.:41:42:40:0,42,630 +20 10008745 . T . . END=10008746 GT:DP:GQ:MIN_DP:PL ./.:52:63:52:0,63,945 ./.:40:36:40:0,36,540 +20 10008747 . T . . END=10008749 GT:DP:GQ:MIN_DP:PL ./.:49:57:48:0,57,855 ./.:39:30:38:0,30,450 +20 10008750 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:51:47:0,51,765 ./.:40:12:40:0,12,936 +20 10008751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:30:49:0,30,450 ./.:42:21:41:0,21,315 +20 10008752 . A . . END=10008753 GT:DP:GQ:MIN_DP:PL ./.:51:33:51:0,33,495 ./.:42:21:41:0,21,315 +20 10008754 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:33:51:0,33,495 ./.:43:24:42:0,24,360 +20 10008755 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:36:51:0,36,540 ./.:43:24:42:0,24,360 +20 10008756 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:33:45:0,33,495 ./.:43:21:43:0,21,315 +20 10008757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:24:48:0,24,360 ./.:44:18:44:0,18,270 +20 10008758 . C CA,CAA, . . BaseQRankSum=0.130;ClippingRankSum=0.00;DP=81;ExcessHet=3.01;MQRankSum=-1.168e+00;RAW_MQandDP=182457,81;ReadPosRankSum=-2.340e-01 GT:AD:DP:GQ:PL:SB ./.:4,31,0,0:35:10:721,10,0,733,102,825,733,102,825,825:3,1,16,15 ./.:0,20,11,0:31:99:804,284,194,434,0,396,767,275,433,745:0,0,14,17 +20 10008759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:0:55:0,0,0 ./.:42:0:42:0,0,0 +20 10008760 . A . . END=10008772 GT:DP:GQ:MIN_DP:PL ./.:55:99:53:0,120,1800 ./.:43:99:41:0,102,1530 +20 10008773 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:0:54:0,0,1660 ./.:42:34:42:0,34,1130 +20 10008774 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:55:0,117,1755 ./.:40:99:40:0,105,1575 +20 10008775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:60:55:0,60,1923 ./.:44:35:44:0,35,1209 +20 10008776 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:41:89:41:0,89,1223 +20 10008777 . C . . END=10008805 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:41:99:39:0,107,1204 +20 10008806 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:40:91:40:0,91,1167 +20 10008807 . A . . END=10008859 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:39:99:36:0,99,1056 +20 10008860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:37:78:37:0,78,1039 +20 10008861 . G . . END=10008887 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:40:99:38:0,102,1132 +20 10008888 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:38:98:38:0,98,1079 +20 10008889 . T . . END=10008890 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:39:99:38:0,111,1665 +20 10008891 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:39:98:39:0,98,1121 +20 10008892 . A . . END=10008901 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:39:99:37:0,99,1107 +20 10008902 . A . . END=10008906 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:38:90:37:0,90,1350 +20 10008907 . G . . END=10008910 GT:DP:GQ:MIN_DP:PL ./.:55:99:45:0,100,1530 ./.:36:81:30:0,81,1215 +20 10008911 . G . . . GT:DP:GQ:MIN_DP:PL ./.:45:93:45:0,93,1395 ./.:36:75:35:0,75,1125 +20 10008912 . A . . END=10008913 GT:DP:GQ:MIN_DP:PL ./.:46:84:45:0,84,1260 ./.:36:75:35:0,75,1125 +20 10008914 . A . . END=10008916 GT:DP:GQ:MIN_DP:PL ./.:46:84:45:0,84,1260 ./.:34:63:32:0,63,945 +20 10008917 . G . . . GT:DP:GQ:MIN_DP:PL ./.:46:78:46:0,78,1170 ./.:34:63:32:0,63,945 +20 10008918 . T . . END=10008920 GT:DP:GQ:MIN_DP:PL ./.:50:66:48:0,66,990 ./.:34:63:32:0,63,945 +20 10008921 . C CA, . . BaseQRankSum=0.610;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=-1.906e+00;RAW_MQandDP=155512,49;ReadPosRankSum=-4.150e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:18,16,0:34:99:.:0|1:10008921_C_CA:291,0,366,345,415,761:10,8,8,8 ./.:.:31:6:31:.:.:0,6,658,6,658,658 +20 10008922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:0:51:0,0,714 ./.:37:57:33:0,57,855 +20 10008923 . A . . END=10008930 GT:DP:GQ:MIN_DP:PL ./.:58:99:55:0,117,1755 ./.:37:57:33:0,57,855 +20 10008931 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:55:0,117,1755 ./.:40:54:40:0,54,810 +20 10008932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:55:0,117,1755 ./.:41:57:41:0,57,855 +20 10008933 . A . . END=10008934 GT:DP:GQ:MIN_DP:PL ./.:58:99:55:0,117,1755 ./.:39:54:38:0,54,810 +20 10008935 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:73:52:0,73,1586 ./.:39:0:39:0,0,807 +20 10008936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:73:52:0,73,1586 ./.:40:39:40:0,39,974 +20 10008937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:54:0,111,1665 ./.:40:45:40:0,45,675 +20 10008938 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:54:0,111,1665 ./.:40:42:40:0,42,630 +20 10008939 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:93:51:0,93,1395 ./.:39:35:39:0,35,950 +20 10008940 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:93:51:0,93,1395 ./.:39:2:39:0,2,898 +20 10008941 . A . . END=10008942 GT:DP:GQ:MIN_DP:PL ./.:50:84:49:0,84,1260 ./.:39:39:38:0,39,585 +20 10008943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:72:49:0,72,1080 ./.:38:36:38:0,36,540 +20 10008944 . T . . . GT:DP:GQ:MIN_DP:PL ./.:49:72:49:0,72,1080 ./.:38:33:38:0,33,495 +20 10008945 . A . . END=10008946 GT:DP:GQ:MIN_DP:PL ./.:49:72:49:0,72,1080 ./.:38:30:38:0,30,450 +20 10008947 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:66:48:0,66,990 ./.:38:0:38:0,0,894 +20 10008948 . TA T, . . BaseQRankSum=0.994;ClippingRankSum=0.00;DP=86;ExcessHet=3.01;MQRankSum=2.05;RAW_MQandDP=257264,86;ReadPosRankSum=0.749 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 ./.:0,33,0:33:99:.:.:1406,99,0,1406,99,1406:0,0,15,18 +20 10008949 . A *, . . DP=86 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:1,50,0:51:99:0|1:10008921_C_CA:2095,107,0,2098,159,2150:1,0,35,15 ./.:0,33,0:33:99:.:.:1406,99,0,1406,99,1406:0,0,15,18 +20 10008950 . A . . END=10008951 GT:DP:GQ:MIN_DP:PL ./.:48:0:48:0,0,0 ./.:39:0:39:0,0,0 +20 10008952 . CACACACACACACA CCACA,CCACACACACA,C,CCA,CCACACACACACA, . . BaseQRankSum=0.941;ClippingRankSum=0.00;DP=96;ExcessHet=3.01;MQRankSum=1.84;RAW_MQandDP=283510,96;ReadPosRankSum=0.685 GT:AD:DP:GQ:PL:SB ./.:1,0,5,3,14,11,0:34:99:1704,1135,1321,726,780,703,876,1092,514,1258,525,744,173,811,845,582,607,443,342,0,530,1135,1321,780,1092,744,607,1321:1,0,25,8 ./.:0,12,15,0,0,0,0:27:99:1315,648,719,505,0,439,1243,714,512,1282,1243,714,512,1282,1282,1243,714,512,1282,1282,1282,1243,714,512,1282,1282,1282,1282:0,0,12,15 +20 10008953 . A *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008954 . C *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008955 . A *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008956 . C *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008957 . A *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008958 . C *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008959 . A *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008960 . C *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008961 . A *, . . DP=96 GT:AD:DP:GQ:PL:SB ./.:1,11,0:34:99:1704,582,530,1135,607,1321:1,0,25,8 ./.:0,15,0:27:99:1315,505,439,1243,512,1282:0,0,12,15 +20 10008962 . C *, . . DP=99 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:39:82:39:0,82,1154,82,1154,1154 +20 10008963 . A *, . . DP=99 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:39:82:39:0,82,1154,82,1154,1154 +20 10008964 . C *, . . DP=100 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:42:99:40:0,99,1485,99,1485,1485 +20 10008965 . A *, . . DP=100 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:1,11,0:34:99:.:1704,582,530,1135,607,1321:1,0,25,8 ./.:.:42:99:40:0,99,1485,99,1485,1485 +20 10008966 . C . . . GT:DP:GQ:MIN_DP:PL ./.:56:95:56:0,95,1995 ./.:42:99:40:0,99,1485 +20 10008967 . A . . END=10008979 GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:42:99:40:0,99,1485 +20 10008980 . C . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:43:95:43:0,95,1276 +20 10008981 . A . . END=10008986 GT:DP:GQ:MIN_DP:PL ./.:58:99:56:0,120,1800 ./.:44:99:42:0,99,1342 +20 10008987 . A . . END=10008989 GT:DP:GQ:MIN_DP:PL ./.:59:94:59:0,94,2181 ./.:44:99:42:0,99,1342 +20 10008990 . C . . END=10008992 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:99:42:0,99,1342 +20 10008993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:72:44:0,72,1233 +20 10008994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:61:44:0,61,1238 +20 10008995 . A . . END=10008996 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:97:44:0,97,1262 +20 10008997 . C . . END=10009012 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:45:99:42:0,109,1342 +20 10009013 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:44:98:44:0,98,1273 +20 10009014 . G . . END=10009060 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:46:99:36:0,99,1287 +20 10009061 . T . . END=10009068 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:90:35:0,90,1055 +20 10009069 . T . . END=10009070 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:34:84:33:0,84,1017 +20 10009071 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:34:99:34:0,99,1485 +20 10009072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:31:78:31:0,78,924 +20 10009073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:32:96:32:0,96,1009 +20 10009074 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:99:35:0,99,1485 +20 10009075 . A . . END=10009076 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:35:93:35:0,93,1080 +20 10009077 . A . . END=10009091 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:37:99:35:0,99,1159 +20 10009092 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:39:93:39:0,93,1178 +20 10009093 . A . . END=10009094 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:40:99:39:0,114,1710 +20 10009095 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:87:42:0,87,1177 +20 10009096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:95:42:0,95,1256 +20 10009097 . A . . END=10009194 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:42:99:37:0,99,1123 +20 10009195 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:40:90:40:0,90,1189 +20 10009196 . C . . END=10009226 GT:DP:GQ:MIN_DP:PL ./.:61:99:38:0,102,1530 ./.:41:99:39:0,108,1142 +20 10009227 . A G, . . BaseQRankSum=-1.130e-01;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=1.43;RAW_MQandDP=350188,103;ReadPosRankSum=-1.093e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:23,39,0:62:99:.:.:1398,0,740,1468,857,2325:16,7,19,20 ./.:16,24,0:40:99:0|1:10009227_A_G:640,0,377,688,449,1137:6,10,13,11 +20 10009228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:59:0,120,1800 ./.:41:95:41:0,95,1151 +20 10009229 . C . . END=10009245 GT:DP:GQ:MIN_DP:PL ./.:62:99:59:0,120,1800 ./.:42:99:39:0,102,1245 +20 10009246 . A G, . . BaseQRankSum=1.56;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=375408,114;ReadPosRankSum=1.72 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,77,0:77:99:.:.:3031,231,0,3031,231,3031:0,0,42,35 ./.:1,35,0:36:99:0|1:10009227_A_G:1312,101,0,1314,108,1321:0,1,19,16 +20 10009247 . A . . END=10009252 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:41:99:40:0,101,1068 +20 10009253 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:40:75:40:0,75,1104 +20 10009254 . A . . END=10009256 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:39:99:39:0,111,1665 +20 10009257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:37:61:37:0,61,955 +20 10009258 . G . . END=10009274 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:42:99:39:0,99,1042 +20 10009275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:42:96:42:0,96,1203 +20 10009276 . T . . END=10009283 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:43:99:42:0,114,1710 +20 10009284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:44:96:44:0,96,1247 +20 10009285 . G . . END=10009399 GT:DP:GQ:MIN_DP:PL ./.:86:99:68:0,120,1800 ./.:50:99:40:0,99,1183 +20 10009400 . T A, . . DP=132;ExcessHet=3.01;RAW_MQandDP=475200,132 GT:AD:DP:GQ:PL:SB ./.:0,74,0:74:99:3027,223,0,3027,223,3027:0,0,39,35 ./.:0,58,0:58:99:1856,174,0,1856,174,1856:0,0,31,27 +20 10009401 . A . . END=10009511 GT:DP:GQ:MIN_DP:PL ./.:78:99:72:0,120,1800 ./.:59:99:55:0,113,1581 +20 10009512 . C G, . . DP=131;ExcessHet=3.01;RAW_MQandDP=457640,131 GT:AD:DP:GQ:PL:SB ./.:0,77,0:77:99:3068,231,0,3068,231,3068:0,0,30,47 ./.:0,53,0:53:99:1578,158,0,1578,158,1578:0,0,30,23 +20 10009513 . A . . END=10009525 GT:DP:GQ:MIN_DP:PL ./.:81:99:63:0,120,1800 ./.:55:99:54:0,120,1800 +20 10009526 . T C, . . BaseQRankSum=-1.994e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=-6.450e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:81:99:63:0,120,1800,120,1800,1800 ./.:50,2,0:52:99:.:0,119,1416,148,1422,1451:29,21,1,1 +20 10009527 . T . . END=10009718 GT:DP:GQ:MIN_DP:PL ./.:81:99:63:0,120,1800 ./.:55:99:47:0,120,1800 +20 10009719 . A G, . . BaseQRankSum=-3.827e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=409010,115;ReadPosRankSum=-1.459e+00 GT:AD:DP:GQ:PL:SB ./.:0,59,0:59:99:1924,175,0,1924,175,1924:0,0,26,33 ./.:24,32,0:56:99:717,0,596,789,691,1480:8,16,20,12 +20 10009720 . T . . END=10009794 GT:DP:GQ:MIN_DP:PL ./.:54:99:47:0,120,1800 ./.:53:99:43:0,120,1800 +20 10009795 . A G, . . DP=92;ExcessHet=3.01;RAW_MQandDP=328969,92 GT:AD:DP:GQ:PL:SB ./.:0,47,0:47:99:1909,141,0,1909,141,1909:0,0,16,31 ./.:0,44,0:44:99:1429,132,0,1429,132,1429:0,0,22,22 +20 10009796 . C . . END=10009813 GT:DP:GQ:MIN_DP:PL ./.:48:99:44:0,120,1800 ./.:43:99:38:0,105,1575 +20 10009814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:44:0,120,1800 ./.:38:96:38:0,96,1440 +20 10009815 . C . . END=10009820 GT:DP:GQ:MIN_DP:PL ./.:48:99:44:0,120,1800 ./.:38:99:33:0,99,1062 +20 10009821 . C . . END=10009825 GT:DP:GQ:MIN_DP:PL ./.:48:99:44:0,120,1800 ./.:35:93:34:0,93,1395 +20 10009826 . A . . END=10009827 GT:DP:GQ:MIN_DP:PL ./.:48:99:44:0,120,1800 ./.:37:99:37:0,99,1485 +20 10009828 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:44:0,120,1800 ./.:37:87:37:0,87,1305 +20 10009829 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:69:54:0,69,1035 ./.:37:57:37:0,57,855 +20 10009830 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:72:54:0,72,1080 ./.:38:60:38:0,60,900 +20 10009831 . A . . END=10009832 GT:DP:GQ:MIN_DP:PL ./.:54:63:53:0,63,945 ./.:37:54:36:0,54,810 +20 10009833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:27:53:0,27,405 ./.:37:42:37:0,42,630 +20 10009834 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:30:53:0,30,450 ./.:37:45:37:0,45,675 +20 10009835 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:33:54:0,33,495 ./.:36:48:36:0,48,720 +20 10009836 . A . . END=10009838 GT:DP:GQ:MIN_DP:PL ./.:55:33:54:0,33,495 ./.:39:51:38:0,51,765 +20 10009839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:30:54:0,30,450 ./.:37:57:36:0,57,855 +20 10009840 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:33:54:0,33,495 ./.:37:57:36:0,57,855 +20 10009841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:27:55:0,27,405 ./.:35:54:34:0,54,810 +20 10009842 . G GAA, . . BaseQRankSum=0.872;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=-6.030e-01;RAW_MQandDP=150092,51;ReadPosRankSum=0.052 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:19,15,0:34:99:.:570,0,690,629,738,1367:9,10,8,7 ./.:.:35:54:34:0,54,810,54,810,810 +20 10009843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:56:27:56:0,27,405 ./.:35:54:34:0,54,810 +20 10009844 . G A, . . BaseQRankSum=1.05;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.975;RAW_MQandDP=262368,83;ReadPosRankSum=0.259 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:16,19,0:35:99:0|1:10009844_G_A:690,0,586,739,644,1382:8,8,9,10 ./.:0,31,0:31:93:0|1:10009844_G_A:1294,93,0,1294,93,1294:0,0,17,14 +20 10009845 . A . . END=10009847 GT:DP:GQ:MIN_DP:PL ./.:55:30:55:0,30,450 ./.:34:57:32:0,57,855 +20 10009848 . G . . . GT:DP:GQ:MIN_DP:PL ./.:58:39:58:0,39,585 ./.:34:57:32:0,57,855 +20 10009849 . A . . END=10009850 GT:DP:GQ:MIN_DP:PL ./.:59:45:58:0,45,675 ./.:34:60:32:0,60,900 +20 10009851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:51:60:0,51,765 ./.:34:60:32:0,60,900 +20 10009852 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:54:60:0,54,810 ./.:34:60:32:0,60,900 +20 10009853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:57:61:0,57,855 ./.:34:60:32:0,60,900 +20 10009854 . G . . END=10009856 GT:DP:GQ:MIN_DP:PL ./.:61:60:60:0,60,900 ./.:34:60:32:0,60,900 +20 10009857 . A . . END=10009860 GT:DP:GQ:MIN_DP:PL ./.:61:60:60:0,60,900 ./.:36:72:34:0,72,1080 +20 10009861 . A . . . GT:DP:GQ:MIN_DP:PL ./.:58:72:56:0,72,1080 ./.:36:72:34:0,72,1080 +20 10009862 . G . . END=10009867 GT:DP:GQ:MIN_DP:PL ./.:58:72:56:0,72,1080 ./.:35:84:34:0,84,1260 +20 10009868 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:81:56:0,81,1215 ./.:35:84:34:0,84,1260 +20 10009869 . A . . END=10009870 GT:DP:GQ:MIN_DP:PL ./.:57:81:56:0,81,1215 ./.:38:93:37:0,93,1395 +20 10009871 . A G, . . BaseQRankSum=-8.030e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=1.50;RAW_MQandDP=295137,99;ReadPosRankSum=1.57 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:17,19,0:36:99:0|1:10009844_G_A:687,0,594,739,652,1391:10,7,9,10 ./.:0,37,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665:0,0,15,22 +20 10009872 . G . . END=10009873 GT:DP:GQ:MIN_DP:PL ./.:57:96:55:0,96,1440 ./.:38:96:38:0,96,1440 +20 10009874 . G . . . GT:DP:GQ:MIN_DP:PL ./.:58:99:58:0,102,1530 ./.:38:96:38:0,96,1440 +20 10009875 . A G,AGGGAGG, . . BaseQRankSum=0.378;ClippingRankSum=0.00;DP=96;ExcessHet=3.01;MQRankSum=1.36;RAW_MQandDP=284337,96;ReadPosRankSum=-8.300e-02 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:2,15,13,0:30:99:.:.:2407,645,533,697,0,574,1881,655,700,1805:2,0,12,16 ./.:0,37,0,0:37:99:0|1:10009844_G_A:1665,111,0,1665,111,1665,1665,111,1665,1665:0,0,15,22 +20 10009876 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:57:0,108,2100 ./.:36:99:34:0,99,1485 +20 10009877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:85:55:0,85,1858 ./.:36:99:34:0,99,1485 +20 10009878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:55:99:55:0,108,1620 ./.:36:99:34:0,99,1485 +20 10009879 . A G, . . BaseQRankSum=1.53;ClippingRankSum=0.00;DP=86;ExcessHet=3.01;MQRankSum=1.57;RAW_MQandDP=253861,86;ReadPosRankSum=1.39 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:2,47,0:49:99:.:.:2273,150,0,2276,154,2279:2,0,15,32 ./.:0,35,0:35:99:0|1:10009844_G_A:1575,105,0,1575,105,1575:0,0,15,20 +20 10009880 . G . . . GT:DP:GQ:MIN_DP:PL ./.:52:80:52:0,80,1858 ./.:37:99:37:0,102,1530 +20 10009881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:50:0,108,1755 ./.:35:94:35:0,94,1053 +20 10009882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:50:0,108,1755 ./.:35:99:35:0,99,1485 +20 10009883 . A G, . . DP=84;ExcessHet=3.01;RAW_MQandDP=255338,84 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,47,0:47:99:.:.:2180,147,0,2180,147,2181:0,0,15,32 ./.:0,33,0:33:99:0|1:10009844_G_A:1485,99,0,1485,99,1485:0,0,13,20 +20 10009884 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:99:53:0,120,1800 ./.:35:89:35:0,89,1025 +20 10009885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:58:52:0,58,1739 ./.:35:93:35:0,93,1020 +20 10009886 . A . . . GT:DP:GQ:MIN_DP:PL ./.:53:0:53:0,0,1490 ./.:35:99:34:0,101,1001 +20 10009887 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:50:0,109,1906 ./.:35:99:34:0,101,1001 +20 10009888 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:0:51:0,0,1610 ./.:35:99:34:0,101,1001 +20 10009889 . A . . END=10009891 GT:DP:GQ:MIN_DP:PL ./.:49:99:49:0,106,1800 ./.:35:99:34:0,101,1001 +20 10009892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:44:50:0,44,1725 ./.:35:99:34:0,101,1001 +20 10009893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:99:51:0,115,2005 ./.:35:99:34:0,101,1001 +20 10009894 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:48:53:0,48,1842 ./.:35:99:34:0,101,1001 +20 10009895 . G . . END=10009898 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,101,1001 +20 10009899 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:88:35:0,88,971 +20 10009900 . A . . END=10009901 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,108,1064 +20 10009902 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:81:36:0,81,1007 +20 10009903 . G . . END=10009904 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:99:36:0,105,1575 +20 10009905 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:83:38:0,83,1124 +20 10009906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:33:98:33:0,98,900 +20 10009907 . G . . END=10009956 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:99:39:0,100,1080 +20 10009957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:97:43:0,97,1341 +20 10009958 . A . . END=10010045 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:42:99:38:0,99,1204 +20 10010046 . G . . END=10010049 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:93:35:0,93,1395 +20 10010050 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:79:38:0,79,1062 +20 10010051 . A . . END=10010054 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:90:36:0,90,1350 +20 10010055 . T . . END=10010057 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:87:33:0,87,1027 +20 10010058 . A . . END=10010068 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:33:90:33:0,90,1350 +20 10010069 . A . . END=10010076 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,99,1485 +20 10010077 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:97:36:0,97,1080 +20 10010078 . A . . END=10010085 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,99,1046 +20 10010086 . C . . END=10010094 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:92:34:0,92,1055 +20 10010095 . A . . END=10010100 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:38:99:37:0,99,1485 +20 10010101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:96:36:0,96,1012 +20 10010102 . T . . END=10010105 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:34:0,102,998 +20 10010106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:90:35:0,90,993 +20 10010107 . A . . END=10010108 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,105,1575 +20 10010109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:94:37:0,94,1059 +20 10010110 . T . . END=10010122 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:41:99:38:0,114,1127 +20 10010123 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:45:89:45:0,89,1199 +20 10010124 . A . . END=10010272 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:43:99:34:0,99,1057 +20 10010273 . A . . END=10010276 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:96:34:0,96,1440 +20 10010277 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,99,1485 +20 10010278 . T . . END=10010287 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:32:0,90,1032 +20 10010288 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:87:35:0,87,1037 +20 10010289 . A . . END=10010293 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:34:0,90,1350 +20 10010294 . T . . END=10010295 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:81:33:0,81,970 +20 10010296 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:96:35:0,96,1440 +20 10010297 . A . . END=10010298 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010299 . A . . END=10010300 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:90:37:0,90,1350 +20 10010301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:87:37:0,87,1305 +20 10010302 . A . . END=10010312 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:39:99:35:0,99,1485 +20 10010313 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:91:36:0,91,1056 +20 10010314 . A . . END=10010315 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,102,1530 +20 10010316 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:32:96:32:0,96,981 +20 10010317 . T . . END=10010319 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,102,1530 +20 10010320 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:94:35:0,94,1105 +20 10010321 . A . . END=10010322 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,102,1530 +20 10010323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:89:35:0,89,1055 +20 10010324 . T . . END=10010329 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:33:0,99,1037 +20 10010330 . T . . END=10010351 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:30:0,90,960 +20 10010352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:99:35:0,99,1485 +20 10010353 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:90:34:0,90,1058 +20 10010354 . C . . END=10010355 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:99:34:0,99,1095 +20 10010356 . C . . END=10010358 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:34:93:34:0,93,1395 +20 10010359 . T . . END=10010363 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010364 . A . . END=10010365 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:37:96:37:0,96,1440 +20 10010366 . A . . END=10010370 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:96:36:0,96,1440 +20 10010372 . T . . END=10010373 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:36:99:36:0,99,1485 +20 10010374 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:35:94:35:0,94,1090 +20 10010375 . C . . END=10010392 GT:DP:GQ:MIN_DP:PL ./.:70:99:45:0,111,1665 ./.:40:99:35:0,99,1485 +20 10010393 . T G, . . BaseQRankSum=-1.738e+00;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=419282,118;ReadPosRankSum=-3.900e-01 GT:AD:DP:GQ:PL:SB ./.:36,43,0:79:99:1493,0,1230,1601,1359,2961:24,12,19,24 ./.:18,21,0:39:99:530,0,466,584,530,1113:10,8,12,9 +20 10010394 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:40:99:40:0,114,1710 +20 10010395 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:39:84:39:0,84,1142 +20 10010396 . G . . END=10010494 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:49:99:37:0,102,1157 +20 10010495 . A . . END=10010497 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:51:90:50:0,90,1350 +20 10010498 . A . . END=10010501 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:52:81:51:0,81,1215 +20 10010502 . A . . END=10010504 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:52:72:50:0,72,1080 +20 10010505 . G . . END=10010508 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:53:63:52:0,63,945 +20 10010509 . T . . END=10010511 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:51:54:50:0,54,810 +20 10010512 . T . . END=10010513 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:52:51:51:0,51,765 +20 10010514 . A . . END=10010516 GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:51:48:51:0,48,720 +20 10010517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:54:45:54:0,45,675 +20 10010518 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:67:0,102,1530 ./.:54:39:54:0,39,585 +20 10010519 . T . . END=10010522 GT:DP:GQ:MIN_DP:PL ./.:90:81:89:0,81,1215 ./.:52:33:52:0,33,495 +20 10010523 . G . . END=10010526 GT:DP:GQ:MIN_DP:PL ./.:92:63:90:0,63,945 ./.:53:24:52:0,24,360 +20 10010527 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:54:88:0,54,810 ./.:53:24:52:0,24,360 +20 10010528 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:51:88:0,51,765 ./.:53:24:52:0,24,360 +20 10010529 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:48:88:0,48,720 ./.:53:21:53:0,21,315 +20 10010530 . T . . END=10010531 GT:DP:GQ:MIN_DP:PL ./.:87:45:86:0,45,675 ./.:53:21:53:0,21,315 +20 10010532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:39:84:0,39,585 ./.:54:15:54:0,15,225 +20 10010533 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:33:83:0,33,495 ./.:51:12:51:0,12,180 +20 10010534 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:24:84:0,24,360 ./.:52:6:52:0,6,90 +20 10010535 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:12:85:0,12,180 ./.:53:9:53:0,9,135 +20 10010536 . G GA, . . DP=140;ExcessHet=3.01;RAW_MQandDP=523500,140 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:2500,243,0,2500,244,2500:0,0,36,43 ./.:0,49,0:49:99:1509,147,0,1509,147,1509:0,0,20,29 +20 10010537 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:0:88:0,0,0 ./.:53:0:53:0,0,0 +20 10010538 . A . . END=10010675 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:48:99:38:0,103,1199 +20 10010676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:38:98:38:0,98,1184 +20 10010677 . T . . END=10010689 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:37:99:37:0,99,1485 +20 10010690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:37:95:37:0,95,1080 +20 10010691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:35:80:35:0,80,1017 +20 10010692 . C . . END=10010733 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:41:99:38:0,101,1165 +20 10010734 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:41:87:41:0,87,1218 +20 10010735 . T . . END=10010765 GT:DP:GQ:MIN_DP:PL ./.:79:99:68:0,120,1800 ./.:43:99:37:0,109,1046 +20 10010766 . T G, . . DP=106;ExcessHet=3.01;RAW_MQandDP=381600,106 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2440,199,0,2440,199,2440:0,0,35,31 ./.:0,38,0:38:99:1065,112,0,1065,112,1065:0,0,16,22 +20 10010767 . G . . END=10010820 GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:43:99:38:0,103,1161 +20 10010821 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:44:84:44:0,84,1309 +20 10010822 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:44:99:44:0,115,1281 +20 10010823 . G T, . . DP=101;ExcessHet=3.01;RAW_MQandDP=144000,40 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:61:0,120,1800,120,1800,1800 ./.:40,0,0:40:99:.:0,120,1251,120,1251,1251:17,23,0,0 +20 10010824 . G . . END=10010831 GT:DP:GQ:MIN_DP:PL ./.:74:99:61:0,120,1800 ./.:48:99:46:0,120,1800 +20 10010832 . T C, . . DP=118;ExcessHet=3.01;RAW_MQandDP=420338,118 GT:AD:DP:GQ:PL:SB ./.:0,75,0:75:99:2980,226,0,2980,226,2980:0,0,31,44 ./.:0,43,0:43:99:1323,128,0,1323,128,1323:0,0,19,24 +20 10010833 . A . . END=10011028 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:44:99:37:0,99,1185 +20 10011029 . C . . END=10011031 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:96:38:0,96,1113 +20 10011032 . A . . END=10011035 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:40:99:39:0,99,1485 +20 10011036 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:39:52:39:0,52,1072 +20 10011037 . A . . END=10011039 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:95:37:0,95,1126 +20 10011040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:79:36:0,79,1040 +20 10011041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:80:37:0,80,1044 +20 10011042 . A . . END=10011043 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:94:37:0,94,1107 +20 10011044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:86:37:0,86,1108 +20 10011045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:99:37:0,99,1136 +20 10011046 . G . . END=10011047 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:76:35:0,76,1052 +20 10011048 . G . . END=10011051 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:33:99:33:0,99,1015 +20 10011052 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:34:90:34:0,90,1018 +20 10011053 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:99:35:0,105,1128 +20 10011054 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:93:35:0,93,1057 +20 10011055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:35:99:35:0,104,1031 +20 10011056 . C . . END=10011057 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:93:35:0,93,971 +20 10011058 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:99:38:0,108,1620 +20 10011059 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:37:94:37:0,94,1021 +20 10011060 . T . . END=10011064 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:99:37:0,99,1120 +20 10011065 . C . . . GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:38:98:38:0,98,1065 +20 10011066 . A . . END=10011074 GT:DP:GQ:MIN_DP:PL ./.:89:99:73:0,120,1800 ./.:36:99:34:0,99,932 +20 10011075 . C T, . . BaseQRankSum=5.36;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=306000,85;ReadPosRankSum=-1.057e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:44,39,0:83:99:.:1354,0,1333,1485,1450,2935:22,22,22,17 ./.:.:36:99:34:0,99,932,99,932,932 +20 10011076 . G . . END=10011077 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:34:0,99,932 +20 10011078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:91:36:0,91,1085 +20 10011079 . A . . END=10011083 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:99:34:0,99,1485 +20 10011084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:89:35:0,89,1065 +20 10011085 . T . . END=10011087 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:35:0,99,1056 +20 10011088 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:92:36:0,92,1053 +20 10011089 . A . . END=10011093 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:37:0,105,1575 +20 10011094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:94:36:0,94,1075 +20 10011095 . A . . END=10011096 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:37:0,105,1575 +20 10011097 . C . . END=10011098 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:96:36:0,96,962 +20 10011099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:39:99:39:0,102,1530 +20 10011100 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:97:37:0,97,1039 +20 10011101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:38:99:38:0,102,1530 +20 10011102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:84:37:0,84,1084 +20 10011103 . C . . END=10011111 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:38:99:36:0,99,1181 +20 10011112 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10011113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:87:35:0,87,1008 +20 10011114 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10011115 . C . . END=10011140 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:34:0,99,1095 +20 10011141 . T . . END=10011145 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:93:37:0,93,1108 +20 10011146 . A . . END=10011149 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:99:35:0,99,1485 +20 10011150 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:96:36:0,96,1096 +20 10011151 . T . . END=10011152 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10011153 . A . . END=10011156 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10011157 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:88:35:0,88,1071 +20 10011158 . C . . END=10011165 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:93:33:0,93,1395 +20 10011166 . C . . END=10011171 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:35:99:34:0,99,1485 +20 10011172 . T . . END=10011177 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:91:34:0,91,1065 +20 10011178 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10011179 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:37:83:37:0,83,1087 +20 10011180 . T . . END=10011227 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:40:99:36:0,101,1135 +20 10011228 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:40:89:40:0,89,1177 +20 10011229 . T . . END=10011280 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:46:99:41:0,111,1329 +20 10011281 . G A, . . BaseQRankSum=-2.303e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=172800,48;ReadPosRankSum=0.763 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:52:0,120,1800,120,1800,1800 ./.:46,2,0:48:99:.:0,124,1411,138,1416,1430:29,17,1,1 +20 10011282 . A . . END=10011308 GT:DP:GQ:MIN_DP:PL ./.:74:99:52:0,120,1800 ./.:51:99:47:0,120,1800 +20 10011309 . T C, . . DP=129;ExcessHet=3.01;RAW_MQandDP=464400,129 GT:AD:DP:GQ:PL:SB ./.:0,77,0:77:99:2721,231,0,2721,231,2721:0,0,30,47 ./.:0,52,0:52:99:1458,154,0,1458,154,1458:0,0,33,19 +20 10011310 . G . . END=10011335 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:49:99:44:0,120,1800 +20 10011336 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:81:46:0,81,1313 +20 10011337 . A . . END=10011413 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:99:39:0,105,1136 +20 10011414 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:42:98:42:0,98,1172 +20 10011415 . G . . END=10011445 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:99:41:0,103,1220 +20 10011446 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:43:97:43:0,97,1261 +20 10011447 . A . . END=10011472 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:99:43:0,105,1305 +20 10011473 . T . . END=10011475 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:93:43:0,93,1395 +20 10011476 . A . . END=10011482 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:81:44:0,81,1215 +20 10011483 . A . . END=10011486 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:48:72:48:0,72,1080 +20 10011487 . T . . END=10011492 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:48:63:48:0,63,945 +20 10011493 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:57:47:0,57,855 +20 10011494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:54:47:0,54,810 +20 10011495 . T . . END=10011504 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:51:44:0,51,765 +20 10011505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:48:45:0,48,720 +20 10011506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:39:45:0,39,585 +20 10011507 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:33:44:0,33,495 +20 10011508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:44:30:44:0,30,450 +20 10011509 . C . . END=10011510 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:45:24:44:0,24,360 +20 10011511 . T . . END=10011513 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:46:12:46:0,12,180 +20 10011514 . A . . END=10011516 GT:DP:GQ:MIN_DP:PL ./.:80:99:70:0,120,1800 ./.:47:9:46:0,9,135 +20 10011517 . GAA GA,G,GAAA, . . BaseQRankSum=0.690;ClippingRankSum=0.00;DP=135;ExcessHet=3.01;MQRankSum=1.80;RAW_MQandDP=486210,135;ReadPosRankSum=1.15 GT:AD:DP:GQ:PL:SB ./.:37,28,2,6,0:73:99:528,0,875,611,1042,2120,604,722,1499,1648,667,966,1700,1470,1638:23,14,19,17 ./.:1,37,0,0,0:38:88:942,88,0,945,111,968,945,111,968,968,945,111,968,968,968:1,0,20,17 +20 10011518 . A *, . . DP=135 GT:AD:DP:GQ:PL:SB ./.:37,28,0:73:99:528,0,875,667,966,1638:23,14,19,17 ./.:1,37,0:38:88:942,88,0,945,111,968:1,0,20,17 +20 10011519 . A *, . . DP=139 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,28,0:73:99:.:528,0,875,667,966,1638:23,14,19,17 ./.:.:48:0:48:0,0,0,0,0,0 +20 10011520 . A . . END=10011556 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:48:99:44:0,100,1332 +20 10011557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:45:94:45:0,94,1206 +20 10011558 . A . . END=10011591 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:47:99:42:0,100,1260 +20 10011592 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:40:87:40:0,87,1145 +20 10011593 . A . . END=10011597 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:40:99:38:0,108,1227 +20 10011598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:41:67:41:0,67,1108 +20 10011599 . C . . END=10011638 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:43:99:39:0,105,1215 +20 10011639 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:42:93:42:0,93,1265 +20 10011640 . A . . END=10011661 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:44:99:39:0,101,1198 +20 10011662 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:37:78:37:0,78,1108 +20 10011663 . G . . END=10011665 GT:DP:GQ:MIN_DP:PL ./.:68:99:62:0,120,1800 ./.:37:99:37:0,108,1144 +20 10011666 . C T, . . DP=108;ExcessHet=3.01;RAW_MQandDP=380523,108 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2990,220,0,2990,220,2990:0,0,43,30 ./.:0,35,0:35:99:1140,105,0,1140,105,1140:0,0,16,19 +20 10011667 . A . . END=10011678 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:39:99:38:0,99,1168 +20 10011679 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:94:38:0,94,1136 +20 10011680 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:39:89:39:0,89,1116 +20 10011681 . T . . END=10011687 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:99:37:0,99,1485 +20 10011688 . T . . END=10011690 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:38:96:38:0,96,1440 +20 10011691 . A . . END=10011938 GT:DP:GQ:MIN_DP:PL ./.:87:99:64:0,111,1665 ./.:45:99:37:0,99,1169 +20 10011939 . C T, . . DP=103;ExcessHet=3.01;RAW_MQandDP=344243,103 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2498,184,0,2498,184,2498:0,0,23,38 ./.:0,42,0:42:99:1304,126,0,1304,126,1304:0,0,22,20 +20 10011940 . G . . END=10011944 GT:DP:GQ:MIN_DP:PL ./.:62:99:54:0,114,1710 ./.:54:99:50:0,99,1399 +20 10011945 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:84:50:0,84,1730 ./.:54:99:50:0,99,1399 +20 10011946 . T . . END=10011981 GT:DP:GQ:MIN_DP:PL ./.:53:99:44:0,102,1530 ./.:54:99:50:0,99,1399 +20 10011982 . G . . END=10011988 GT:DP:GQ:MIN_DP:PL ./.:53:99:44:0,102,1530 ./.:56:90:55:0,90,1350 +20 10011989 . G . . END=10011992 GT:DP:GQ:MIN_DP:PL ./.:53:99:44:0,102,1530 ./.:57:81:54:0,81,1215 +20 10011993 . C . . END=10011994 GT:DP:GQ:MIN_DP:PL ./.:59:90:57:0,90,1350 ./.:57:81:54:0,81,1215 +20 10011995 . T . . END=10011996 GT:DP:GQ:MIN_DP:PL ./.:59:90:57:0,90,1350 ./.:58:75:58:0,75,1125 +20 10011997 . A . . END=10011998 GT:DP:GQ:MIN_DP:PL ./.:59:75:59:0,75,1125 ./.:59:60:57:0,60,900 +20 10011999 . T . . END=10012000 GT:DP:GQ:MIN_DP:PL ./.:60:63:59:0,63,945 ./.:59:60:57:0,60,900 +20 10012001 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:57:60:0,57,855 ./.:59:60:57:0,60,900 +20 10012002 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:51:61:0,51,765 ./.:59:60:57:0,60,900 +20 10012003 . T . . END=10012004 GT:DP:GQ:MIN_DP:PL ./.:61:48:61:0,48,720 ./.:59:60:57:0,60,900 +20 10012005 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:48:61:0,48,720 ./.:59:54:59:0,54,810 +20 10012006 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:39:63:0,39,585 ./.:60:48:60:0,48,720 +20 10012007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:36:64:0,36,540 ./.:59:42:59:0,42,630 +20 10012008 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:33:63:0,33,495 ./.:60:39:60:0,39,585 +20 10012009 . G . . END=10012010 GT:DP:GQ:MIN_DP:PL ./.:64:33:63:0,33,495 ./.:57:30:55:0,30,450 +20 10012011 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:24:65:0,24,360 ./.:57:27:57:0,27,405 +20 10012012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:21:65:0,21,315 ./.:57:27:57:0,27,405 +20 10012013 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:18:66:0,18,270 ./.:57:27:57:0,27,405 +20 10012014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:9:66:0,9,135 ./.:58:21:58:0,21,315 +20 10012015 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:9:66:0,9,135 ./.:57:18:57:0,18,270 +20 10012016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:3:68:0,3,45 ./.:57:6:57:0,6,90 +20 10012017 . A . . END=10012018 GT:DP:GQ:MIN_DP:PL ./.:68:0:68:0,0,0 ./.:57:3:56:0,3,45 +20 10012019 . G . . END=10012020 GT:DP:GQ:MIN_DP:PL ./.:68:0:68:0,0,0 ./.:55:0:53:0,0,0 +20 10012021 . CA C, . . DP=119;ExcessHet=3.01;RAW_MQandDP=404476,119 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 ./.:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012022 . A *, . . DP=119 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2013,198,0,2013,198,2013:0,0,26,40 ./.:0,45,0:45:99:1375,135,0,1375,135,1375:0,0,19,26 +20 10012023 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:0:69:0,0,0 ./.:54:0:54:0,0,0 +20 10012024 . A . . END=10012147 GT:DP:GQ:MIN_DP:PL ./.:70:99:38:0,99,1485 ./.:66:99:47:0,119,1428 +20 10012148 . G . . END=10012157 GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012158 . A . . END=10012159 GT:DP:GQ:MIN_DP:PL ./.:35:84:34:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012160 . C . . END=10012162 GT:DP:GQ:MIN_DP:PL ./.:34:78:34:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012163 . G . . END=10012167 GT:DP:GQ:MIN_DP:PL ./.:34:81:33:0,81,1215 ./.:66:99:47:0,119,1428 +20 10012168 . C . . END=10012170 GT:DP:GQ:MIN_DP:PL ./.:31:78:29:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012171 . T . . END=10012174 GT:DP:GQ:MIN_DP:PL ./.:29:61:29:0,61,1035 ./.:66:99:47:0,119,1428 +20 10012175 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:72:30:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:69:29:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012177 . C . . END=10012179 GT:DP:GQ:MIN_DP:PL ./.:31:72:30:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012180 . C . . END=10012181 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:66:99:47:0,119,1428 +20 10012182 . C . . END=10012183 GT:DP:GQ:MIN_DP:PL ./.:30:78:29:0,78,1170 ./.:66:99:47:0,119,1428 +20 10012184 . C . . END=10012196 GT:DP:GQ:MIN_DP:PL ./.:32:81:30:0,81,1215 ./.:66:99:47:0,119,1428 +20 10012197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012198 . G . . END=10012200 GT:DP:GQ:MIN_DP:PL ./.:33:84:32:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:30:53:30:0,53,1087 ./.:66:99:47:0,119,1428 +20 10012202 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:62:32:0,62,1157 ./.:66:99:47:0,119,1428 +20 10012203 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:53:32:0,53,1153 ./.:66:99:47:0,119,1428 +20 10012204 . T . . END=10012211 GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:66:99:47:0,119,1428 +20 10012212 . G . . END=10012215 GT:DP:GQ:MIN_DP:PL ./.:31:84:30:0,84,1260 ./.:66:99:47:0,119,1428 +20 10012216 . C . . END=10012221 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012222 . T . . END=10012224 GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012225 . G . . END=10012229 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012230 . A . . END=10012234 GT:DP:GQ:MIN_DP:PL ./.:25:66:25:0,66,990 ./.:66:99:47:0,119,1428 +20 10012235 . A . . END=10012237 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:26:69:26:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012239 . G . . END=10012241 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012242 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,921 ./.:66:99:47:0,119,1428 +20 10012243 . T . . END=10012244 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012245 . C . . END=10012252 GT:DP:GQ:MIN_DP:PL ./.:25:66:24:0,66,990 ./.:66:99:47:0,119,1428 +20 10012253 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:48:24:0,48,893 ./.:66:99:47:0,119,1428 +20 10012254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,865 ./.:66:99:47:0,119,1428 +20 10012255 . C . . END=10012260 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012261 . T . . END=10012266 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012267 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:58:27:0,58,1061 ./.:66:99:47:0,119,1428 +20 10012268 . G . . END=10012277 GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:66:99:47:0,119,1428 +20 10012278 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012279 . G . . END=10012285 GT:DP:GQ:MIN_DP:PL ./.:25:69:24:0,69,1035 ./.:66:99:47:0,119,1428 +20 10012286 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012287 . A . . END=10012299 GT:DP:GQ:MIN_DP:PL ./.:26:60:25:0,60,900 ./.:66:99:47:0,119,1428 +20 10012300 . G . . END=10012311 GT:DP:GQ:MIN_DP:PL ./.:26:72:24:0,72,920 ./.:66:99:47:0,119,1428 +20 10012312 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:60:27:0,60,991 ./.:66:99:47:0,119,1428 +20 10012313 . G . . END=10012315 GT:DP:GQ:MIN_DP:PL ./.:27:72:27:0,72,1080 ./.:66:99:47:0,119,1428 +20 10012316 . G . . END=10012320 GT:DP:GQ:MIN_DP:PL ./.:26:60:26:0,60,941 ./.:66:99:47:0,119,1428 +20 10012321 . G . . END=10012328 GT:DP:GQ:MIN_DP:PL ./.:27:75:27:0,75,1125 ./.:66:99:47:0,119,1428 +20 10012329 . G . . END=10012346 GT:DP:GQ:MIN_DP:PL ./.:25:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012347 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:58:24:0,58,884 ./.:66:99:47:0,119,1428 +20 10012348 . C . . END=10012351 GT:DP:GQ:MIN_DP:PL ./.:23:60:23:0,60,900 ./.:66:99:47:0,119,1428 +20 10012352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:66:99:47:0,119,1428 +20 10012353 . G . . END=10012354 GT:DP:GQ:MIN_DP:PL ./.:24:51:23:0,51,765 ./.:66:99:47:0,119,1428 +20 10012355 . T . . END=10012357 GT:DP:GQ:MIN_DP:PL ./.:24:54:24:0,54,810 ./.:66:99:47:0,119,1428 +20 10012358 . G . . END=10012360 GT:DP:GQ:MIN_DP:PL ./.:23:51:23:0,51,765 ./.:66:99:47:0,119,1428 +20 10012361 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:48:23:0,48,720 ./.:66:99:47:0,119,1428 +20 10012362 . G T,A, . . DP=87;ExcessHet=3.01;RAW_MQandDP=290018,87 GT:AD:DP:GQ:PL:SB ./.:0,23,0,0:23:69:864,69,0,864,69,864,864,69,864,864:0,0,2,21 ./.:0,23,39,0:62:99:1646,970,901,677,0,562,1646,970,677,1646:0,0,29,33 +20 10012363 . G . . END=10012364 GT:DP:GQ:MIN_DP:PL ./.:22:51:21:0,51,765 ./.:57:99:55:0,120,1800 +20 10012365 . G . . END=10012372 GT:DP:GQ:MIN_DP:PL ./.:21:54:19:0,54,810 ./.:57:99:55:0,120,1800 +20 10012373 . G . . END=10012376 GT:DP:GQ:MIN_DP:PL ./.:18:51:17:0,51,616 ./.:57:99:55:0,120,1800 +20 10012377 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:48:17:0,48,720 ./.:57:99:55:0,120,1800 +20 10012378 . C . . . GT:DP:GQ:MIN_DP:PL ./.:18:42:18:0,42,604 ./.:57:99:55:0,120,1800 +20 10012379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:45:18:0,45,675 ./.:57:99:55:0,120,1800 +20 10012380 . G . . END=10012381 GT:DP:GQ:MIN_DP:PL ./.:18:42:18:0,42,630 ./.:57:99:55:0,120,1800 +20 10012382 . A . . END=10012383 GT:DP:GQ:MIN_DP:PL ./.:18:39:18:0,39,585 ./.:57:99:55:0,120,1800 +20 10012384 . T C, . . BaseQRankSum=-1.773e+00;ClippingRankSum=0.00;DP=74;ExcessHet=3.01;MQRankSum=-8.110e-01;RAW_MQandDP=54886,19;ReadPosRankSum=0.190 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:10,8,0:18:99:.:258,0,355,288,379,667:0,10,2,6 ./.:.:57:99:55:0,120,1800,120,1800,1800 +20 10012385 . T . . END=10012386 GT:DP:GQ:MIN_DP:PL ./.:18:39:17:0,39,585 ./.:57:99:55:0,120,1800 +20 10012387 . T C, . . DP=74;ExcessHet=3.01;RAW_MQandDP=252059,74 GT:AD:DP:GQ:PL:SB ./.:0,16,0:16:50:562,50,0,562,50,562:0,0,2,14 ./.:0,56,0:56:99:1487,165,0,1487,165,1487:0,0,25,31 +20 10012388 . G . . END=10012395 GT:DP:GQ:MIN_DP:PL ./.:15:36:13:0,36,540 ./.:60:99:57:0,120,1800 +20 10012396 . G . . END=10012398 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:60:99:57:0,120,1800 +20 10012399 . G . . END=10012402 GT:DP:GQ:MIN_DP:PL ./.:16:45:15:0,45,561 ./.:60:99:57:0,120,1800 +20 10012403 . T . . . GT:DP:GQ:MIN_DP:PL ./.:15:17:15:0,17,521 ./.:60:99:57:0,120,1800 +20 10012404 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:42:14:0,42,564 ./.:60:99:57:0,120,1800 +20 10012405 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012406 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:3:15:0,3,396 ./.:60:99:57:0,120,1800 +20 10012407 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:2:15:0,2,481 ./.:60:99:57:0,120,1800 +20 10012408 . G . . END=10012409 GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012410 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:33:15:0,33,495 ./.:60:99:57:0,120,1800 +20 10012411 . C . . END=10012412 GT:DP:GQ:MIN_DP:PL ./.:15:30:14:0,30,450 ./.:60:99:57:0,120,1800 +20 10012413 . C . . END=10012416 GT:DP:GQ:MIN_DP:PL ./.:16:33:14:0,33,495 ./.:60:99:57:0,120,1800 +20 10012417 . C . . END=10012419 GT:DP:GQ:MIN_DP:PL ./.:16:36:15:0,36,540 ./.:60:99:57:0,120,1800 +20 10012420 . G . . END=10012422 GT:DP:GQ:MIN_DP:PL ./.:14:39:13:0,39,482 ./.:60:99:57:0,120,1800 +20 10012423 . G . . END=10012424 GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:60:99:57:0,120,1800 +20 10012425 . A . . END=10012426 GT:DP:GQ:MIN_DP:PL ./.:15:39:15:0,39,585 ./.:60:99:57:0,120,1800 +20 10012427 . C . . . GT:DP:GQ:MIN_DP:PL ./.:16:42:16:0,42,630 ./.:60:99:57:0,120,1800 +20 10012428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:17:45:17:0,45,675 ./.:60:99:57:0,120,1800 +20 10012429 . G . . END=10012431 GT:DP:GQ:MIN_DP:PL ./.:17:42:17:0,42,630 ./.:60:99:57:0,120,1800 +20 10012432 . C . . END=10012433 GT:DP:GQ:MIN_DP:PL ./.:18:45:17:0,45,675 ./.:60:99:57:0,120,1800 +20 10012434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:18:48:18:0,48,720 ./.:60:99:57:0,120,1800 +20 10012435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:51:19:0,51,765 ./.:60:99:57:0,120,1800 +20 10012436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:60:99:57:0,120,1800 +20 10012437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:57:20:0,57,855 ./.:60:99:57:0,120,1800 +20 10012438 . T . . END=10012440 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,787 ./.:60:99:57:0,120,1800 +20 10012441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012442 . A . . END=10012454 GT:DP:GQ:MIN_DP:PL ./.:22:60:21:0,60,815 ./.:60:99:57:0,120,1800 +20 10012455 . G . . END=10012456 GT:DP:GQ:MIN_DP:PL ./.:21:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012457 . G . . END=10012458 GT:DP:GQ:MIN_DP:PL ./.:22:60:22:0,60,900 ./.:60:99:57:0,120,1800 +20 10012459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:60:99:57:0,120,1800 +20 10012460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:60:99:57:0,120,1800 +20 10012461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:57:23:0,57,855 ./.:60:99:57:0,120,1800 +20 10012462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:49:23:0,49,825 ./.:60:99:57:0,120,1800 +20 10012463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:23:47:23:0,47,803 ./.:60:99:57:0,120,1800 +20 10012464 . A . . END=10012465 GT:DP:GQ:MIN_DP:PL ./.:22:57:21:0,57,855 ./.:60:99:57:0,120,1800 +20 10012466 . C . . END=10012467 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:60:99:57:0,120,1800 +20 10012468 . C . . END=10012470 GT:DP:GQ:MIN_DP:PL ./.:20:51:19:0,51,765 ./.:60:99:57:0,120,1800 +20 10012471 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:60:99:57:0,120,1800 +20 10012472 . G . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:60:99:57:0,120,1800 +20 10012473 . G . . END=10012474 GT:DP:GQ:MIN_DP:PL ./.:20:39:19:0,39,585 ./.:60:99:57:0,120,1800 +20 10012475 . C . . END=10012476 GT:DP:GQ:MIN_DP:PL ./.:20:36:19:0,36,540 ./.:60:99:57:0,120,1800 +20 10012477 . G . . END=10012478 GT:DP:GQ:MIN_DP:PL ./.:18:33:17:0,33,495 ./.:60:99:57:0,120,1800 +20 10012479 . A G, . . DP=71;ExcessHet=3.01;RAW_MQandDP=224731,71 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,17,0:17:50:0|1:10012479_A_G:621,50,0,621,50,621:0,0,9,8 ./.:0,54,0:54:99:0|1:10012479_A_G:2384,168,0,2384,168,2384:0,0,23,31 +20 10012480 . G . . END=10012482 GT:DP:GQ:MIN_DP:PL ./.:17:24:16:0,24,360 ./.:60:99:57:0,120,1800 +20 10012483 . G . . END=10012489 GT:DP:GQ:MIN_DP:PL ./.:13:27:12:0,27,405 ./.:60:99:57:0,120,1800 +20 10012490 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:22:11:0,22,359 ./.:60:99:57:0,120,1800 +20 10012491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,269 ./.:60:99:57:0,120,1800 +20 10012492 . G . . END=10012494 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,304 ./.:60:99:57:0,120,1800 +20 10012495 . C . . END=10012497 GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:60:99:57:0,120,1800 +20 10012498 . C G, . . DP=67;ExcessHet=3.01;RAW_MQandDP=203952,67 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012479_A_G:495,33,0,495,33,495:0,0,4,7 ./.:0,56,0:56:99:0|1:10012479_A_G:2544,172,0,2544,172,2544:0,0,28,28 +20 10012499 . G . . END=10012501 GT:DP:GQ:MIN_DP:PL ./.:12:30:10:0,30,350 ./.:59:99:56:0,120,1800 +20 10012502 . C . . END=10012503 GT:DP:GQ:MIN_DP:PL ./.:12:27:12:0,27,405 ./.:59:99:56:0,120,1800 +20 10012504 . C . . END=10012508 GT:DP:GQ:MIN_DP:PL ./.:11:24:10:0,24,360 ./.:59:99:56:0,120,1800 +20 10012509 . A . . END=10012513 GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:59:99:56:0,120,1800 +20 10012514 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:24:11:0,24,360 ./.:59:99:56:0,120,1800 +20 10012515 . A . . . GT:DP:GQ:MIN_DP:PL ./.:12:27:12:0,27,405 ./.:59:99:56:0,120,1800 +20 10012516 . G . . END=10012517 GT:DP:GQ:MIN_DP:PL ./.:12:24:11:0,24,360 ./.:59:99:56:0,120,1800 +20 10012518 . T C, . . DP=62;ExcessHet=3.01;RAW_MQandDP=181508,62 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,9,0:9:30:0|1:10012479_A_G:435,30,0,435,30,435:0,0,4,5 ./.:0,52,0:52:99:0|1:10012479_A_G:2297,157,0,2297,157,2297:0,0,27,25 +20 10012519 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:27:12:0,27,405 ./.:56:99:54:0,99,1485 +20 10012520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:12:24:12:0,24,400 ./.:56:99:54:0,99,1485 +20 10012521 . C T, . . BaseQRankSum=2.36;ClippingRankSum=0.00;DP=65;ExcessHet=3.01;MQRankSum=-3.800e-02;RAW_MQandDP=19192,11;ReadPosRankSum=1.97 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:8,3,0:11:75:.:75,0,224,99,233,332:4,4,2,1 ./.:.:56:99:54:0,99,1485,99,1485,1485 +20 10012522 . A . . END=10012525 GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:56:99:54:0,99,1485 +20 10012526 . G . . . GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:56:99:54:0,99,1485 +20 10012527 . C . . . GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:56:99:54:0,99,1485 +20 10012528 . T . . END=10012529 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:53:93:52:0,93,1395 +20 10012530 . C . . END=10012531 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:54:87:53:0,87,1305 +20 10012532 . C . . END=10012536 GT:DP:GQ:MIN_DP:PL ./.:10:21:9:0,21,315 ./.:53:72:51:0,72,1080 +20 10012537 . T . . END=10012541 GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:53:60:51:0,60,900 +20 10012542 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:53:60:51:0,60,900 +20 10012543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:50:57:50:0,57,855 +20 10012544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:51:54:50:0,54,810 +20 10012545 . C . . END=10012546 GT:DP:GQ:MIN_DP:PL ./.:7:12:6:0,12,180 ./.:51:54:50:0,54,810 +20 10012547 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:7:8:0,7,219 ./.:50:48:50:0,48,720 +20 10012548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:12:8:0,12,180 ./.:51:45:50:0,45,675 +20 10012549 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:7:8:0,7,255 ./.:51:45:50:0,45,675 +20 10012550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:10:12:10:0,12,180 ./.:51:45:50:0,45,675 +20 10012551 . T . . END=10012552 GT:DP:GQ:MIN_DP:PL ./.:10:12:10:0,12,180 ./.:51:42:51:0,42,630 +20 10012553 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:9:10:0,9,135 ./.:50:39:50:0,39,585 +20 10012554 . G . . END=10012555 GT:DP:GQ:MIN_DP:PL ./.:10:9:10:0,9,135 ./.:52:36:52:0,36,540 +20 10012556 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:6:9:0,6,90 ./.:53:33:53:0,33,495 +20 10012557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:6:9:0,6,90 ./.:52:30:51:0,30,450 +20 10012558 . C . . . GT:DP:GQ:MIN_DP:PL ./.:9:3:9:0,3,45 ./.:52:30:51:0,30,450 +20 10012559 . C . . . GT:DP:GQ:MIN_DP:PL ./.:9:0:8:0,0,0 ./.:51:15:51:0,15,225 +20 10012560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:0:8:0,0,0 ./.:51:9:51:0,9,135 +20 10012561 . T . . END=10012565 GT:DP:GQ:MIN_DP:PL ./.:9:0:8:0,0,0 ./.:51:0:50:0,0,0 +20 10012566 . C . . END=10012569 GT:DP:GQ:MIN_DP:PL ./.:9:0:8:0,0,0 ./.:51:3:50:0,3,45 +20 10012570 . G GCA, . . DP=59;ExcessHet=3.01;RAW_MQandDP=153728,59 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,9,0:9:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,8,1 ./.:0,46,0:46:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,22,24 +20 10012571 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,0 ./.:51:0:51:0,0,0 +20 10012572 . GT G, . . DP=61;ExcessHet=3.01;RAW_MQandDP=158169,61 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 ./.:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012573 . T *, . . DP=61 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,11,0:11:33:0|1:10012570_G_GCA:495,33,0,495,33,495:0,0,10,1 ./.:0,48,0:48:99:0|1:10012570_G_GCA:2168,147,0,2168,147,2168:0,0,24,24 +20 10012574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:0:12:0,0,0 ./.:50:0:50:0,0,0 +20 10012575 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:0:12:0,0,0 ./.:51:21:51:0,21,1387 +20 10012576 . T . . . GT:DP:GQ:MIN_DP:PL ./.:12:4:12:0,4,413 ./.:52:26:52:0,26,1439 +20 10012577 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:9:12:0,9,419 ./.:53:28:53:0,28,1291 +20 10012578 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:2:12:0,2,328 ./.:53:38:53:0,38,1313 +20 10012579 . G . . END=10012581 GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:52:99:51:0,99,1485 +20 10012582 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:99:51:0,99,1485 +20 10012583 . C . . END=10012585 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:90:51:0,90,1350 +20 10012586 . C . . END=10012587 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:52:84:51:0,84,1260 +20 10012588 . G . . END=10012589 GT:DP:GQ:MIN_DP:PL ./.:13:33:12:0,33,495 ./.:51:75:49:0,75,1125 +20 10012590 . C . . END=10012591 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:51:75:49:0,75,1125 +20 10012592 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:14:14:0,14,377 ./.:50:63:49:0,63,945 +20 10012593 . C . . END=10012594 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:50:63:49:0,63,945 +20 10012595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:51:57:51:0,57,855 +20 10012596 . T . . END=10012597 GT:DP:GQ:MIN_DP:PL ./.:14:33:14:0,33,495 ./.:51:57:51:0,57,855 +20 10012598 . C . . END=10012600 GT:DP:GQ:MIN_DP:PL ./.:14:30:14:0,30,450 ./.:50:51:49:0,51,765 +20 10012601 . G . . END=10012602 GT:DP:GQ:MIN_DP:PL ./.:15:33:15:0,33,495 ./.:50:51:49:0,51,765 +20 10012603 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:33:15:0,33,495 ./.:50:48:50:0,48,720 +20 10012604 . C . . END=10012605 GT:DP:GQ:MIN_DP:PL ./.:15:33:15:0,33,495 ./.:51:36:50:0,36,540 +20 10012606 . C . . . GT:DP:GQ:MIN_DP:PL ./.:15:30:15:0,30,450 ./.:49:33:45:0,33,495 +20 10012607 . C . . END=10012609 GT:DP:GQ:MIN_DP:PL ./.:15:27:14:0,27,405 ./.:49:33:45:0,33,495 +20 10012610 . C . . END=10012612 GT:DP:GQ:MIN_DP:PL ./.:17:30:17:0,30,450 ./.:49:33:45:0,33,495 +20 10012613 . C . . END=10012615 GT:DP:GQ:MIN_DP:PL ./.:17:30:17:0,30,450 ./.:49:30:49:0,30,450 +20 10012616 . C . . END=10012618 GT:DP:GQ:MIN_DP:PL ./.:17:30:17:0,30,450 ./.:47:24:46:0,24,360 +20 10012619 . T . . END=10012621 GT:DP:GQ:MIN_DP:PL ./.:19:21:17:0,21,315 ./.:47:12:47:0,12,180 +20 10012622 . G . . END=10012623 GT:DP:GQ:MIN_DP:PL ./.:19:21:17:0,21,315 ./.:47:3:45:0,3,45 +20 10012624 . T . . . GT:DP:GQ:MIN_DP:PL ./.:19:21:17:0,21,315 ./.:48:0:44:0,0,0 +20 10012625 . C . . END=10012630 GT:DP:GQ:MIN_DP:PL ./.:21:24:20:0,24,360 ./.:48:0:44:0,0,0 +20 10012631 . C CG, . . BaseQRankSum=-1.030e+00;ClippingRankSum=0.00;DP=66;ExcessHet=3.01;MQRankSum=-1.670e+00;RAW_MQandDP=190457,66;ReadPosRankSum=-8.350e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:8,13,0:21:99:0|1:10012631_C_CG:522,0,297,546,336,882:8,0,9,4 ./.:0,43,0:43:99:0|1:10012631_C_CG:1933,132,0,1933,132,1933:0,0,20,23 +20 10012632 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:0:21:0,0,0 ./.:48:0:48:0,0,0 +20 10012633 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:35:20:0,35,707 ./.:45:52:45:0,52,1226 +20 10012634 . C . . END=10012635 GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:46:99:45:0,114,1710 +20 10012636 . G C, . . BaseQRankSum=2.71;ClippingRankSum=0.00;DP=64;ExcessHet=3.01;MQRankSum=-1.513e+00;RAW_MQandDP=187532,64;ReadPosRankSum=-7.180e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:8,14,0:22:99:0|1:10012631_C_CG:556,0,294,580,336,916:8,0,10,4 ./.:0,41,0:41:99:0|1:10012631_C_CG:1932,132,0,1932,132,1932:0,0,19,22 +20 10012637 . A . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:45:53:45:0,53,1153 +20 10012638 . G . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:44:51:44:0,51,1203 +20 10012639 . C . . . GT:DP:GQ:MIN_DP:PL ./.:20:54:20:0,54,810 ./.:44:99:41:0,100,1128 +20 10012640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:44:99:41:0,100,1128 +20 10012641 . T . . END=10012651 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:44:99:41:0,100,1128 +20 10012652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:43:95:43:0,95,1320 +20 10012653 . A . . END=10012662 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,895 ./.:47:99:40:0,110,1146 +20 10012663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:47:99:40:0,110,1146 +20 10012664 . C . . END=10012665 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:47:99:40:0,110,1146 +20 10012666 . C . . END=10012669 GT:DP:GQ:MIN_DP:PL ./.:22:54:22:0,54,810 ./.:47:99:40:0,110,1146 +20 10012670 . G . . END=10012671 GT:DP:GQ:MIN_DP:PL ./.:23:57:23:0,57,855 ./.:47:99:40:0,110,1146 +20 10012672 . C . . END=10012675 GT:DP:GQ:MIN_DP:PL ./.:24:60:23:0,60,900 ./.:47:99:40:0,110,1146 +20 10012676 . C . . END=10012685 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:47:99:40:0,110,1146 +20 10012686 . G . . END=10012687 GT:DP:GQ:MIN_DP:PL ./.:29:84:29:0,84,1260 ./.:47:99:40:0,110,1146 +20 10012688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:66:28:0,66,1001 ./.:47:99:40:0,110,1146 +20 10012689 . C . . END=10012694 GT:DP:GQ:MIN_DP:PL ./.:29:84:28:0,84,1100 ./.:47:99:40:0,110,1146 +20 10012695 . A . . END=10012700 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012701 . G . . END=10012702 GT:DP:GQ:MIN_DP:PL ./.:33:87:33:0,87,1305 ./.:47:99:40:0,110,1146 +20 10012703 . G . . END=10012706 GT:DP:GQ:MIN_DP:PL ./.:34:90:32:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012707 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:78:33:0,78,1121 ./.:47:99:40:0,110,1146 +20 10012708 . G . . END=10012713 GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:47:99:40:0,110,1146 +20 10012714 . G C, . . DP=79;ExcessHet=3.01;RAW_MQandDP=257587,79 GT:AD:DP:GQ:PL:SB ./.:0,35,0:35:99:1329,105,0,1329,105,1329:0,0,29,6 ./.:0,44,0:44:99:1341,132,0,1341,132,1341:0,0,21,23 +20 10012715 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:45:99:43:0,112,1275 +20 10012716 . A . . END=10012718 GT:DP:GQ:MIN_DP:PL ./.:36:93:36:0,93,1395 ./.:45:99:43:0,112,1275 +20 10012719 . G . . END=10012722 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:45:99:43:0,112,1275 +20 10012723 . G . . END=10012725 GT:DP:GQ:MIN_DP:PL ./.:37:72:37:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012726 . A . . END=10012727 GT:DP:GQ:MIN_DP:PL ./.:38:69:37:0,69,1035 ./.:45:99:43:0,112,1275 +20 10012728 . T . . END=10012730 GT:DP:GQ:MIN_DP:PL ./.:38:72:38:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012731 . C . . END=10012732 GT:DP:GQ:MIN_DP:PL ./.:38:69:37:0,69,1035 ./.:45:99:43:0,112,1275 +20 10012733 . G . . END=10012736 GT:DP:GQ:MIN_DP:PL ./.:31:72:27:0,72,1080 ./.:45:99:43:0,112,1275 +20 10012737 . G . . END=10012739 GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012740 . C . . END=10012742 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:45:99:43:0,112,1275 +20 10012743 . C . . END=10012750 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:45:99:43:0,112,1275 +20 10012751 . T C, . . DP=75;ExcessHet=3.01;RAW_MQandDP=232994,75 GT:AD:DP:GQ:PL:SB ./.:0,30,0:30:89:966,89,0,966,89,966:0,0,17,13 ./.:0,42,0:42:99:1298,125,0,1298,125,1298:0,0,21,21 +20 10012752 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:74:29:0,74,1014 ./.:51:99:43:0,110,1192 +20 10012754 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:51:99:43:0,110,1192 +20 10012755 . G . . END=10012756 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,908 ./.:51:99:43:0,110,1192 +20 10012757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1093 ./.:51:99:43:0,110,1192 +20 10012758 . C . . END=10012761 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,981 ./.:51:99:43:0,110,1192 +20 10012762 . A . . END=10012766 GT:DP:GQ:MIN_DP:PL ./.:31:81:29:0,81,949 ./.:51:99:43:0,110,1192 +20 10012767 . C . . END=10012769 GT:DP:GQ:MIN_DP:PL ./.:32:75:31:0,75,1125 ./.:51:99:43:0,110,1192 +20 10012770 . G . . END=10012772 GT:DP:GQ:MIN_DP:PL ./.:33:81:33:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012773 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:79:31:0,79,1133 ./.:51:99:43:0,110,1192 +20 10012774 . A . . END=10012779 GT:DP:GQ:MIN_DP:PL ./.:31:81:28:0,81,1215 ./.:51:99:43:0,110,1192 +20 10012780 . G . . END=10012782 GT:DP:GQ:MIN_DP:PL ./.:32:93:32:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012783 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:86:33:0,86,1233 ./.:51:99:43:0,110,1192 +20 10012784 . G . . END=10012785 GT:DP:GQ:MIN_DP:PL ./.:34:93:33:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012786 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:69:34:0,69,1237 ./.:51:99:43:0,110,1192 +20 10012787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:93:33:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012788 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:70:32:0,70,1178 ./.:51:99:43:0,110,1192 +20 10012789 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:86:34:0,86,1298 ./.:51:99:43:0,110,1192 +20 10012790 . T . . END=10012795 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:51:99:43:0,110,1192 +20 10012796 . T . . END=10012797 GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012798 . G . . END=10012808 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012810 . A . . END=10012819 GT:DP:GQ:MIN_DP:PL ./.:36:90:34:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:70:35:0,70,1358 ./.:51:99:43:0,110,1192 +20 10012821 . G . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:78:35:0,78,1329 ./.:51:99:43:0,110,1192 +20 10012823 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:51:99:43:0,110,1192 +20 10012824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:51:99:43:0,110,1192 +20 10012825 . A . . END=10012826 GT:DP:GQ:MIN_DP:PL ./.:36:96:36:0,96,1440 ./.:51:99:43:0,110,1192 +20 10012827 . C . . END=10012838 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:51:99:43:0,110,1192 +20 10012839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:92:44:0,92,1324 +20 10012840 . A . . END=10012853 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:99:38:0,100,1084 +20 10012854 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:37:98:37:0,98,1108 +20 10012855 . A . . END=10012874 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:43:99:37:0,100,1096 +20 10012875 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:44:98:44:0,98,1282 +20 10012876 . T . . END=10012902 GT:DP:GQ:MIN_DP:PL ./.:42:99:37:0,99,1245 ./.:41:99:37:0,99,1139 +20 10012903 . G . . END=10012910 GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:41:99:37:0,99,1139 +20 10012911 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:40:86:40:0,86,1133 +20 10012912 . A . . END=10012914 GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:40:99:38:0,101,1145 +20 10012915 . G . . END=10012921 GT:DP:GQ:MIN_DP:PL ./.:37:93:36:0,93,1395 ./.:40:99:38:0,101,1145 +20 10012922 . A . . END=10012926 GT:DP:GQ:MIN_DP:PL ./.:38:87:36:0,87,1305 ./.:40:99:38:0,101,1145 +20 10012927 . A . . . GT:DP:GQ:MIN_DP:PL ./.:37:79:37:0,79,1391 ./.:40:99:38:0,101,1145 +20 10012928 . C . . END=10012968 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:40:99:38:0,101,1145 +20 10012969 . G A, . . BaseQRankSum=-3.050e-01;ClippingRankSum=0.00;DP=81;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=0.498 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:99:38:0,99,1485,99,1485,1485 ./.:18,25,0:43:99:.:643,0,410,696,485,1181:9,9,11,14 +20 10012970 . A . . END=10012996 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:44:99:42:0,112,1313 +20 10012997 . C T, . . BaseQRankSum=0.991;ClippingRankSum=0.00;DP=82;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=0.206 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:66:99:38:0,99,1485,99,1485,1485 ./.:19,25,0:44:99:.:648,0,454,705,529,1234:8,11,11,14 +20 10012998 . A . . END=10013026 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:43:99:39:0,100,1121 +20 10013027 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:40:94:40:0,94,1127 +20 10013028 . T . . END=10013041 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:38:99:34:0,99,999 +20 10013042 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:38:97:38:0,97,1036 +20 10013043 . G . . END=10013048 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:37:99:36:0,99,1485 +20 10013049 . A . . END=10013051 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:93:35:0,93,1395 +20 10013052 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:79:32:0,79,799 +20 10013053 . G . . END=10013059 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:34:81:32:0,81,867 +20 10013060 . T . . END=10013064 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:75:30:0,75,1125 +20 10013065 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:30:0,81,1215 +20 10013066 . C . . END=10013067 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:31:78:31:0,78,1170 +20 10013068 . C . . END=10013071 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:26:78:26:0,78,794 +20 10013073 . A . . END=10013075 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:29:81:29:0,81,1215 +20 10013076 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:29:75:29:0,75,830 +20 10013077 . C . . END=10013079 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013080 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:31:70:31:0,70,869 +20 10013081 . G . . END=10013083 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:81:29:0,81,1215 +20 10013084 . C . . END=10013085 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:90:31:0,90,1350 +20 10013086 . C . . END=10013087 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:82:31:0,82,810 +20 10013088 . G . . END=10013089 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:32:0,93,1395 +20 10013090 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:78:33:0,78,975 +20 10013091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:96:33:0,96,1440 +20 10013092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:82:33:0,82,1019 +20 10013093 . A . . END=10013095 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:32:0,93,1395 +20 10013096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:87:33:0,87,969 +20 10013097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:93:33:0,93,1395 +20 10013098 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:87:33:0,87,971 +20 10013099 . C . . END=10013101 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:32:93:31:0,93,984 +20 10013102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:30:66:30:0,66,872 +20 10013103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:33:88:33:0,88,1038 +20 10013104 . G . . END=10013108 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:99:33:0,99,1049 +20 10013109 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:86:35:0,86,1058 +20 10013110 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:36:99:36:0,99,1485 +20 10013111 . G . . END=10013115 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:96:32:0,96,1006 +20 10013116 . G . . END=10013117 GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:99:33:0,99,1032 +20 10013118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:38:0,99,1485 ./.:35:87:35:0,87,1019 +20 10013119 . C T, . . BaseQRankSum=2.72;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.131;RAW_MQandDP=273922,92;ReadPosRankSum=0.336 GT:AD:DP:GQ:PL:SB ./.:29,30,0:59:99:1040,0,936,1127,1026,2153:19,10,17,13 ./.:15,18,0:33:99:454,0,354,499,407,906:8,7,6,12 +20 10013120 . A . . END=10013121 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,102,1083 +20 10013122 . A . . END=10013136 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:90:31:0,90,1350 +20 10013137 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:80:32:0,80,967 +20 10013138 . A . . END=10013150 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:30:0,90,966 +20 10013151 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:87:34:0,87,1005 +20 10013152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10013153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10013154 . C . . END=10013155 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:96:33:0,96,1440 +20 10013156 . G . . END=10013157 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,99,1485 +20 10013158 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:98:33:0,98,989 +20 10013159 . G . . END=10013160 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:34:0,102,1003 +20 10013161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:37:0,90,1060 +20 10013162 . A . . END=10013181 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:36:0,105,1034 +20 10013182 . A . . END=10013183 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:92:38:0,92,1108 +20 10013184 . A . . END=10013186 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:37:0,100,1130 +20 10013187 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:97:38:0,97,1095 +20 10013188 . T . . END=10013197 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:38:99:36:0,102,1077 +20 10013198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:85:34:0,85,990 +20 10013199 . T . . END=10013202 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:35:0,99,1045 +20 10013203 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:97:36:0,97,1062 +20 10013204 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10013205 . C . . END=10013207 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10013208 . T . . END=10013213 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:33:0,99,992 +20 10013214 . C . . END=10013215 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:91:32:0,91,993 +20 10013216 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10013217 . T . . END=10013218 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10013219 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10013220 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:84:36:0,84,1016 +20 10013221 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:96:37:0,96,1440 +20 10013222 . C . . END=10013223 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:87:37:0,87,1305 +20 10013224 . T . . END=10013225 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:90:36:0,90,1350 +20 10013226 . C . . END=10013231 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:81:33:0,81,1215 +20 10013232 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:70:33:0,70,914 +20 10013233 . T . . END=10013234 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:81:31:0,81,1215 +20 10013235 . A . . END=10013243 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:74:26:0,74,810 +20 10013244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,821 +20 10013245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:65:27:0,65,762 +20 10013246 . C . . END=10013248 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:75:25:0,75,769 +20 10013249 . C . . END=10013250 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:28:0,81,1215 +20 10013251 . C . . END=10013254 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:75:27:0,75,1125 +20 10013255 . T . . END=10013262 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:80:29:0,80,919 +20 10013263 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:62:28:0,62,836 +20 10013264 . C . . END=10013273 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:28:0,81,900 +20 10013274 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:67:30:0,67,876 +20 10013275 . A . . END=10013279 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:27:0,81,797 +20 10013280 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:78:26:0,78,737 +20 10013281 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:69:28:0,69,800 +20 10013282 . A . . END=10013283 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:28:0,81,810 +20 10013284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:71:29:0,71,795 +20 10013285 . T . . END=10013288 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:29:0,84,1260 +20 10013289 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:55:30:0,55,878 +20 10013290 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:30:0,84,1260 +20 10013291 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:55:30:0,55,847 +20 10013292 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:39:29:0,39,770 +20 10013293 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:78:29:0,78,1170 +20 10013294 . T . . END=10013296 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:30:0,81,1215 +20 10013297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:75:30:0,75,1125 +20 10013298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:56:29:0,56,823 +20 10013299 . C . . END=10013301 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:72:30:0,72,1080 +20 10013302 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:63:31:0,63,833 +20 10013303 . A . . END=10013322 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:72:25:0,72,687 +20 10013323 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:58:25:0,58,716 +20 10013324 . C . . END=10013327 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:75:25:0,75,748 +20 10013328 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:37:27:0,37,750 +20 10013329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,821 +20 10013330 . G . . END=10013338 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:70:27:0,70,776 +20 10013339 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:67:26:0,67,725 +20 10013340 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:75:27:0,75,1125 +20 10013341 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:59:25:0,59,684 +20 10013342 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:50:26:0,50,628 +20 10013343 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:45:26:0,45,675 +20 10013344 . T . . END=10013348 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:25:72:24:0,72,680 +20 10013349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:67:26:0,67,714 +20 10013350 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:45:26:0,45,726 +20 10013351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:72:26:0,72,1080 +20 10013352 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:23:35:23:0,35,564 +20 10013353 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:23:69:23:0,69,619 +20 10013354 . C . . END=10013355 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:75:25:0,75,679 +20 10013356 . G . . END=10013361 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:66:22:0,66,589 +20 10013362 . A . . END=10013364 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:72:28:0,72,1080 +20 10013365 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:53:29:0,53,808 +20 10013366 . C . . END=10013386 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:26:72:25:0,72,733 +20 10013387 . T . . END=10013389 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,804 +20 10013390 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:24:72:24:0,72,737 +20 10013391 . C . . END=10013392 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:80:27:0,80,767 +20 10013393 . G . . END=10013396 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:78:26:0,78,788 +20 10013397 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:81:27:0,81,816 +20 10013398 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:27:70:27:0,70,786 +20 10013399 . C . . END=10013407 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:81:29:0,81,1215 +20 10013408 . C . . END=10013409 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:32:0,90,1350 +20 10013410 . G . . END=10013413 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:81:31:0,81,1215 +20 10013414 . G . . END=10013415 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:32:0,90,1350 +20 10013416 . C . . END=10013421 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:82:30:0,82,901 +20 10013422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:72:30:0,72,895 +20 10013423 . C . . END=10013428 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:28:81:27:0,81,833 +20 10013429 . A . . END=10013430 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:77:30:0,77,855 +20 10013431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:57:30:0,57,829 +20 10013432 . A . . END=10013433 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:28:0,81,1215 +20 10013434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:90:32:0,90,1350 +20 10013435 . A . . END=10013436 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:81:31:0,81,935 +20 10013437 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:47:32:0,47,885 +20 10013438 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:39:32:0,39,823 +20 10013439 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:67:32:0,67,916 +20 10013440 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:46:32:0,46,844 +20 10013441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:90:33:0,90,1350 +20 10013442 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:33:54:33:0,54,925 +20 10013443 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:64:32:0,64,907 +20 10013444 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:27:31:0,27,789 +20 10013445 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:84:32:0,84,1260 +20 10013446 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:69:32:0,69,933 +20 10013447 . A . . END=10013454 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:29:0,84,1260 +20 10013455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:52:29:0,52,743 +20 10013456 . A . . END=10013459 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:84:30:0,84,1260 +20 10013460 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:64:29:0,64,844 +20 10013461 . C . . END=10013480 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:81:28:0,81,854 +20 10013481 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:31:63:31:0,63,923 +20 10013482 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:30:90:30:0,90,923 +20 10013483 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:53:29:0,53,769 +20 10013484 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:29:87:29:0,87,820 +20 10013485 . C . . END=10013486 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:32:92:31:0,92,932 +20 10013487 . A . . END=10013488 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1017 +20 10013489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:68:34:0,68,1014 +20 10013490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1090 +20 10013491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:91:34:0,91,1049 +20 10013492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:99:34:0,102,1111 +20 10013493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:94:35:0,94,1100 +20 10013494 . G . . END=10013502 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:99:34:0,99,1080 +20 10013503 . C . . END=10013506 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:93:37:0,93,1395 +20 10013507 . C . . END=10013508 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:87:35:0,87,1305 +20 10013509 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:90:36:0,90,1350 +20 10013510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:74:36:0,74,1023 +20 10013511 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:37:99:37:0,99,1485 +20 10013512 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:36:56:36:0,56,950 +20 10013513 . G . . END=10013519 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:35:99:35:0,99,1055 +20 10013520 . C . . END=10013521 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:34:73:33:0,73,980 +20 10013522 . T . . END=10013573 GT:DP:GQ:MIN_DP:PL ./.:66:99:52:0,120,1800 ./.:48:99:35:0,105,1074 +20 10013574 . G A, . . BaseQRankSum=3.47;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=-2.710e-01;RAW_MQandDP=236198,70;ReadPosRankSum=0.789 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:38,31,0:69:99:.:1079,0,1301,1194,1394,2588:15,23,7,24 ./.:.:48:99:35:0,105,1074,105,1074,1074 +20 10013575 . T . . END=10013696 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:99:35:0,105,1074 +20 10013697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:94:46:0,94,1320 +20 10013698 . T . . END=10013730 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:40:0,99,1239 +20 10013731 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:95:42:0,95,1317 +20 10013732 . C . . END=10013754 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:40:0,111,1192 +20 10013755 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:88:41:0,88,1234 +20 10013756 . C . . END=10013805 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:38:0,102,1200 +20 10013806 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:98:39:0,98,1173 +20 10013807 . T . . END=10013813 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:99:36:0,102,1119 +20 10013814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:98:39:0,98,1170 +20 10013815 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:38:99:38:0,111,1665 +20 10013816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:38:71:38:0,71,1106 +20 10013817 . A . . END=10013818 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:99:38:0,111,1665 +20 10013819 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:97:39:0,97,1204 +20 10013820 . T . . END=10013842 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:40:99:39:0,105,1181 +20 10013843 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:68:42:0,68,1214 +20 10013844 . G . . END=10013912 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:39:0,107,1199 +20 10013913 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:97:43:0,97,1293 +20 10013914 . A . . END=10013922 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:42:99:40:0,108,1294 +20 10013923 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:95:41:0,95,1270 +20 10013924 . A . . END=10013982 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:41:99:36:0,99,1199 +20 10013983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:39:84:39:0,84,1128 +20 10013984 . A . . END=10014081 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:36:0,106,1114 +20 10014082 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:47:95:47:0,95,1287 +20 10014083 . A . . END=10014332 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:99:41:0,102,1280 +20 10014333 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:96:48:0,96,1341 +20 10014334 . G . . END=10014412 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:51:99:45:0,109,1391 +20 10014413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:54:93:54:0,93,1564 +20 10014414 . T . . END=10014423 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:49:99:47:0,117,1395 +20 10014424 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:48:95:48:0,95,1430 +20 10014425 . T . . END=10014480 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:99:43:0,101,1303 +20 10014481 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:45:89:45:0,89,1257 +20 10014482 . T . . END=10014493 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:46:99:44:0,105,1331 +20 10014494 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:44:78:44:0,78,1281 +20 10014495 . T . . END=10014510 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:43:99:41:0,120,1800 +20 10014511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:40:95:40:0,95,1204 +20 10014512 . T . . END=10014589 GT:DP:GQ:MIN_DP:PL ./.:72:99:43:0,101,1658 ./.:47:99:40:0,104,1206 +20 10014590 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1625 ./.:47:99:40:0,104,1206 +20 10014591 . T . . END=10014753 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:47:99:40:0,104,1206 +20 10014754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:43:98:43:0,98,1290 +20 10014755 . C . . END=10014760 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:42:99:40:0,117,1755 +20 10014761 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:39:87:39:0,87,1185 +20 10014762 . C . . END=10014911 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:42:99:38:0,99,1175 +20 10014912 . T . . END=10014914 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:96:37:0,96,1440 +20 10014915 . C . . END=10014934 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:99:34:0,102,1102 +20 10014935 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:36:87:36:0,87,1114 +20 10014936 . G . . END=10014947 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:36:99:35:0,99,1108 +20 10014948 . T . . END=10014949 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:35:90:34:0,90,1350 +20 10014950 . C . . END=10014962 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:81:32:0,81,1063 +20 10014963 . G . . END=10014970 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:33:72:31:0,72,1080 +20 10014971 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:62:34:0,62,958 +20 10014972 . A . . END=10014973 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:72:33:0,72,1080 +20 10014974 . A . . END=10014978 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:34:63:31:0,63,945 +20 10014979 . G . . END=10014980 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:35:54:34:0,54,810 +20 10014981 . A . . END=10014982 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:37:57:37:0,57,855 +20 10014983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:54:38:0,54,810 +20 10014984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:51:38:0,51,765 +20 10014985 . A . . END=10014987 GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:54:37:0,54,810 +20 10014988 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:42:38:0,42,630 +20 10014989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:42:0,116,1732 ./.:38:39:38:0,39,585 +20 10014990 . C CAT, . . BaseQRankSum=1.93;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=3.11;RAW_MQandDP=452269,123;ReadPosRankSum=0.144 GT:AD:DP:GQ:PL:SB ./.:38,38,0:76:99:1275,0,1248,1389,1365,2755:28,10,25,13 ./.:12,22,0:34:99:735,0,363,772,429,1201:3,9,10,12 +20 10014991 . A . . . GT:DP:GQ:MIN_DP:PL ./.:88:0:88:0,0,402 ./.:38:0:38:0,0,0 +20 10014992 . T . . END=10014993 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:35:0,99,1485 +20 10014994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:83:35:0,83,1046 +20 10014995 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:73:35:0,73,1032 +20 10014996 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:89:35:0,89,1084 +20 10014997 . A . . END=10014998 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:99:35:0,99,1485 +20 10014999 . A . . END=10015002 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:32:0,90,1350 +20 10015003 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:87:34:0,87,1305 +20 10015004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:35:0,90,1350 +20 10015005 . A . . END=10015015 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:30:0,81,1215 +20 10015016 . T . . END=10015017 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:78:28:0,78,1170 +20 10015018 . T . . END=10015023 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:81:30:0,81,1215 +20 10015024 . A . . END=10015025 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:76:31:0,76,896 +20 10015026 . T . . END=10015034 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:28:0,81,1215 +20 10015035 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:28:72:28:0,72,811 +20 10015036 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:29:0,84,1260 +20 10015037 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:76:29:0,76,792 +20 10015038 . A . . END=10015039 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:28:0,81,819 +20 10015040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:74:30:0,74,866 +20 10015041 . A . . END=10015045 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:28:0,84,832 +20 10015046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:60:30:0,60,841 +20 10015047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:78:30:0,78,883 +20 10015048 . T . . END=10015052 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:87:29:0,87,842 +20 10015053 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:72:29:0,72,847 +20 10015054 . T . . END=10015056 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:81:29:0,81,855 +20 10015057 . T . . END=10015059 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:28:78:28:0,78,1170 +20 10015060 . G . . END=10015067 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:29:0,81,1215 +20 10015068 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10015069 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:75:31:0,75,891 +20 10015070 . A . . END=10015071 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015072 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:76:32:0,76,928 +20 10015073 . T . . END=10015074 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:32:0,90,1350 +20 10015075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:82:33:0,82,960 +20 10015076 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:90:33:0,90,1350 +20 10015077 . G . . END=10015078 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:87:33:0,87,1305 +20 10015079 . G . . END=10015084 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:93:32:0,93,1395 +20 10015085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:76:34:0,76,995 +20 10015086 . A . . END=10015092 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:31:0,90,1350 +20 10015093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:80:32:0,80,941 +20 10015094 . G . . END=10015097 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:31:0,90,1350 +20 10015098 . T . . END=10015100 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:87:31:0,87,1305 +20 10015101 . T . . END=10015106 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:90:32:0,90,1350 +20 10015107 . T . . END=10015109 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:33:0,99,1030 +20 10015110 . A . . END=10015111 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015112 . G . . END=10015113 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:84:31:0,84,1260 +20 10015114 . C . . END=10015122 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:33:0,90,1350 +20 10015123 . A . . END=10015124 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:99:33:0,99,1032 +20 10015125 . G . . END=10015130 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,971 +20 10015131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:81:33:0,81,971 +20 10015132 . C . . END=10015136 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:93:32:0,93,1395 +20 10015137 . T . . END=10015147 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:34:0,99,1057 +20 10015148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:79:38:0,79,1106 +20 10015149 . T . . END=10015153 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:99:37:0,108,1620 +20 10015154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:39:90:39:0,90,1194 +20 10015155 . T . . END=10015158 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:37:0,99,1485 +20 10015159 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:98:38:0,98,1209 +20 10015160 . A . . END=10015161 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:99:38:0,99,1485 +20 10015162 . T . . END=10015181 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:90:31:0,90,1010 +20 10015182 . C . . END=10015183 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:34:0,99,1485 +20 10015184 . A . . END=10015190 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015191 . G . . END=10015193 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:99:34:0,99,1485 +20 10015194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:96:32:0,96,1019 +20 10015195 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:86:33:0,86,980 +20 10015196 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:96:32:0,96,953 +20 10015197 . A . . END=10015198 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:99:33:0,99,994 +20 10015199 . A . . END=10015200 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:83:33:0,83,1014 +20 10015202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:96:34:0,96,1440 +20 10015203 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:79:34:0,79,984 +20 10015204 . C . . END=10015208 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:34:90:33:0,90,1350 +20 10015209 . A . . END=10015219 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:84:30:0,84,1260 +20 10015220 . G . . END=10015222 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:78:29:0,78,1170 +20 10015223 . T . . END=10015227 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:81:30:0,81,1215 +20 10015228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:67:31:0,67,891 +20 10015229 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:74:31:0,74,896 +20 10015230 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:69:29:0,69,847 +20 10015231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:73:29:0,73,871 +20 10015232 . G . . END=10015236 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:84:28:0,84,862 +20 10015237 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:29:69:29:0,69,822 +20 10015238 . A . . END=10015239 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:87:29:0,87,892 +20 10015240 . T . . END=10015247 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:90:30:0,90,924 +20 10015248 . C . . END=10015253 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:81:32:0,81,1027 +20 10015254 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:74:35:0,74,1003 +20 10015255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:87:35:0,87,1305 +20 10015256 . T . . END=10015258 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:90:32:0,90,1350 +20 10015259 . T . . END=10015269 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:81:28:0,81,1215 +20 10015270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:79:32:0,79,901 +20 10015271 . T . . END=10015290 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:81:29:0,81,880 +20 10015291 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:90:31:0,90,1350 +20 10015292 . A . . END=10015293 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:30:87:29:0,87,917 +20 10015294 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:78:31:0,78,961 +20 10015295 . T . . END=10015301 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:32:93:32:0,93,1395 +20 10015302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:31:63:31:0,63,871 +20 10015303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:33:96:33:0,96,1440 +20 10015304 . A . . END=10015311 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:99:33:0,99,1039 +20 10015312 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:85:37:0,85,1132 +20 10015313 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:98:37:0,98,1148 +20 10015314 . T . . END=10015316 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,102,1530 +20 10015317 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:93:37:0,93,1113 +20 10015318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:84:37:0,84,1101 +20 10015319 . A . . END=10015322 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:96:36:0,96,1440 +20 10015323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,99,1485 +20 10015324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:94:37:0,94,1139 +20 10015325 . C . . END=10015327 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,102,1530 +20 10015328 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:92:36:0,92,1078 +20 10015329 . A . . END=10015330 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:35:0,102,1530 +20 10015331 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:97:36:0,97,1106 +20 10015332 . T . . END=10015338 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,99,1090 +20 10015339 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:76:37:0,76,1055 +20 10015340 . G . . END=10015342 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:36:99:36:0,100,1085 +20 10015343 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:35:94:35:0,94,1019 +20 10015344 . T . . END=10015348 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:37:99:36:0,102,1102 +20 10015349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:38:98:38:0,98,1161 +20 10015350 . G . . END=10015385 GT:DP:GQ:MIN_DP:PL ./.:73:99:41:0,102,1530 ./.:40:99:37:0,100,1049 +20 10015386 . G . . END=10015388 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:40:99:37:0,100,1049 +20 10015389 . A . . END=10015390 GT:DP:GQ:MIN_DP:PL ./.:38:81:38:0,81,1215 ./.:40:99:37:0,100,1049 +20 10015391 . G . . END=10015392 GT:DP:GQ:MIN_DP:PL ./.:37:78:36:0,78,1170 ./.:40:99:37:0,100,1049 +20 10015393 . G . . END=10015399 GT:DP:GQ:MIN_DP:PL ./.:36:81:34:0,81,1215 ./.:40:99:37:0,100,1049 +20 10015400 . G . . END=10015402 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:40:99:37:0,100,1049 +20 10015403 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:38:97:38:0,97,1098 +20 10015404 . A . . END=10015406 GT:DP:GQ:MIN_DP:PL ./.:29:75:29:0,75,1125 ./.:38:99:35:0,99,1142 +20 10015407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:38:99:35:0,99,1142 +20 10015408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:38:99:35:0,99,1142 +20 10015409 . G . . END=10015410 GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:38:99:35:0,99,1142 +20 10015411 . G . . END=10015415 GT:DP:GQ:MIN_DP:PL ./.:28:72:27:0,72,1080 ./.:38:99:35:0,99,1142 +20 10015416 . G . . END=10015420 GT:DP:GQ:MIN_DP:PL ./.:29:81:27:0,81,844 ./.:38:99:35:0,99,1142 +20 10015421 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:38:28:0,38,931 ./.:38:99:35:0,99,1142 +20 10015422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:75:27:0,75,1125 ./.:40:81:40:0,81,1107 +20 10015423 . A . . END=10015427 GT:DP:GQ:MIN_DP:PL ./.:30:75:27:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015428 . C . . END=10015429 GT:DP:GQ:MIN_DP:PL ./.:30:69:29:0,69,1035 ./.:39:99:34:0,102,1067 +20 10015430 . A . . END=10015434 GT:DP:GQ:MIN_DP:PL ./.:31:72:30:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015435 . G . . END=10015442 GT:DP:GQ:MIN_DP:PL ./.:27:60:26:0,60,900 ./.:39:99:34:0,102,1067 +20 10015443 . C . . END=10015444 GT:DP:GQ:MIN_DP:PL ./.:30:72:29:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015445 . G . . END=10015446 GT:DP:GQ:MIN_DP:PL ./.:29:69:28:0,69,1035 ./.:39:99:34:0,102,1067 +20 10015447 . G . . END=10015450 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:39:99:34:0,102,1067 +20 10015451 . C . . END=10015452 GT:DP:GQ:MIN_DP:PL ./.:29:81:28:0,81,1215 ./.:39:99:34:0,102,1067 +20 10015453 . C . . END=10015457 GT:DP:GQ:MIN_DP:PL ./.:27:75:27:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015458 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:27:0,57,940 ./.:39:99:34:0,102,1067 +20 10015459 . A . . END=10015460 GT:DP:GQ:MIN_DP:PL ./.:27:75:26:0,75,1125 ./.:39:99:34:0,102,1067 +20 10015461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:39:99:34:0,102,1067 +20 10015462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:37:94:37:0,94,1114 +20 10015463 . C . . END=10015467 GT:DP:GQ:MIN_DP:PL ./.:32:93:31:0,93,1159 ./.:37:99:36:0,108,1008 +20 10015468 . C . . END=10015469 GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:37:99:36:0,108,1008 +20 10015470 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:37:98:37:0,98,1118 +20 10015471 . A . . END=10015472 GT:DP:GQ:MIN_DP:PL ./.:33:99:33:0,99,1007 ./.:38:99:37:0,99,1485 +20 10015473 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:96:33:0,96,1440 ./.:38:99:37:0,99,1485 +20 10015474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:82:33:0,82,1161 ./.:38:99:37:0,99,1485 +20 10015475 . A . . END=10015478 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1145 ./.:36:95:36:0,95,1065 +20 10015479 . C . . END=10015499 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1145 ./.:38:99:35:0,99,1046 +20 10015500 . C . . END=10015504 GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1240 ./.:38:99:35:0,99,1046 +20 10015505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:61:32:0,61,1132 ./.:38:99:35:0,99,1046 +20 10015506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:81:32:0,81,1215 ./.:38:99:35:0,99,1046 +20 10015507 . C . . END=10015513 GT:DP:GQ:MIN_DP:PL ./.:30:72:29:0,72,1080 ./.:38:99:35:0,99,1046 +20 10015514 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:35:93:35:0,93,1071 +20 10015515 . G . . END=10015522 GT:DP:GQ:MIN_DP:PL ./.:27:63:25:0,63,945 ./.:37:99:35:0,102,1077 +20 10015523 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,855 ./.:37:93:37:0,93,1395 +20 10015524 . G . . END=10015527 GT:DP:GQ:MIN_DP:PL ./.:23:51:23:0,51,765 ./.:35:66:32:0,66,990 +20 10015528 . G . . END=10015532 GT:DP:GQ:MIN_DP:PL ./.:24:54:22:0,54,810 ./.:35:66:32:0,66,990 +20 10015533 . G . . END=10015534 GT:DP:GQ:MIN_DP:PL ./.:20:48:20:0,48,720 ./.:35:66:32:0,66,990 +20 10015535 . A . . . GT:DP:GQ:MIN_DP:PL ./.:20:45:20:0,45,675 ./.:35:66:32:0,66,990 +20 10015536 . G . . END=10015546 GT:DP:GQ:MIN_DP:PL ./.:18:33:15:0,33,495 ./.:31:36:30:0,36,540 +20 10015547 . GGGCGGAGGCGGAGGCGGA G, . . BaseQRankSum=-6.510e-01;ClippingRankSum=0.00;DP=46;ExcessHet=3.01;MQRankSum=-8.130e-01;RAW_MQandDP=114200,31;ReadPosRankSum=-4.540e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:15:24:15:.:.:0,24,360,24,360,360 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015548 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015549 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015550 . C *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015551 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015552 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015553 . A *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015554 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015555 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015556 . C *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015557 . G *, . . DP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:16,6,0:22:99:.:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619,241,639,880:8,8,3,3 +20 10015558 . GA G, . . BaseQRankSum=2.93;ClippingRankSum=0.00;DP=35;ExcessHet=3.01;MQRankSum=1.30;RAW_MQandDP=107000,29;ReadPosRankSum=1.42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:12,16,0:28:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015559 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:12,16,0:28:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362,617,410,1027:5,7,8,8 +20 10015560 . GGCGGAGGCGGA G, . . BaseQRankSum=2.91;ClippingRankSum=0.00;DP=36;ExcessHet=3.01;MQRankSum=1.35;RAW_MQandDP=110600,30;ReadPosRankSum=1.70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015561 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015562 . C *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015563 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015564 . G *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015565 . A *, . . DP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:11:0:6:.:.:0,0,0,0,0,0 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015566 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015567 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015568 . C *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015569 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015570 . G *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015571 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:5:3:5:.:.:0,3,45,3,45,45 ./.:13,16,0:29:99:.:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383,617,432,1049:5,8,8,8 +20 10015572 . G . . END=10015579 GT:DP:GQ:MIN_DP:PL ./.:5:3:5:0,3,45 ./.:29:69:28:0,69,1035 +20 10015580 . C . . . GT:DP:GQ:MIN_DP:PL ./.:5:3:5:0,3,45 ./.:28:72:26:0,72,1080 +20 10015581 . G . . END=10015587 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:28:72:26:0,72,1080 +20 10015588 . G . . . GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:26:47:26:0,47,774 +20 10015589 . A . . END=10015590 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:25:42:24:0,42,700 +20 10015591 . G . . END=10015595 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:25:72:24:0,72,732 +20 10015596 . G . . END=10015598 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,69 ./.:29:84:28:0,84,836 +20 10015599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,109 ./.:29:84:28:0,84,836 +20 10015600 . G . . END=10015603 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,166 ./.:32:90:30:0,90,881 +20 10015604 . C . . END=10015610 GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,158 ./.:32:90:30:0,90,881 +20 10015611 . C . . END=10015614 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,193 ./.:32:90:30:0,90,881 +20 10015615 . C . . . GT:DP:GQ:MIN_DP:PL ./.:7:21:7:0,21,279 ./.:32:90:30:0,90,881 +20 10015616 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:33:79:33:0,79,987 +20 10015617 . A . . END=10015621 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,254 ./.:33:93:31:0,93,922 +20 10015622 . G . . END=10015623 GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,329 ./.:33:93:31:0,93,922 +20 10015624 . A . . END=10015630 GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,347 ./.:33:93:31:0,93,922 +20 10015631 . G . . END=10015632 GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,347 ./.:35:99:33:0,99,990 +20 10015633 . T . . END=10015637 GT:DP:GQ:MIN_DP:PL ./.:12:36:12:0,36,471 ./.:35:99:33:0,99,990 +20 10015638 . C . . END=10015641 GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:36:93:35:0,93,1395 +20 10015642 . C . . END=10015652 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:34:81:32:0,81,1215 +20 10015653 . T . . . GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:32:74:32:0,74,974 +20 10015654 . G . . END=10015656 GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:33:84:31:0,84,1260 +20 10015657 . T . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:13:0,36,540 ./.:32:73:32:0,73,971 +20 10015658 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:32:87:31:0,87,1305 +20 10015659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:32:87:31:0,87,1305 +20 10015660 . C . . END=10015661 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:32:90:31:0,90,938 +20 10015662 . G . . END=10015668 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:32:90:31:0,90,938 +20 10015669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:33:88:33:0,88,1000 +20 10015670 . C . . END=10015673 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:34:96:34:0,96,1440 +20 10015674 . C . . END=10015675 GT:DP:GQ:MIN_DP:PL ./.:13:33:11:0,33,418 ./.:36:99:35:0,99,1485 +20 10015676 . G . . END=10015678 GT:DP:GQ:MIN_DP:PL ./.:11:27:11:0,27,405 ./.:36:99:35:0,99,1485 +20 10015679 . C T, . . BaseQRankSum=1.79;ClippingRankSum=0.00;DP=44;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=161000,44;ReadPosRankSum=0.355 GT:AD:DP:GQ:PL:SB ./.:5,5,0:10:99:169,0,166,184,181,365:5,0,5,0 ./.:22,11,0:33:99:241,0,808,310,841,1150:11,11,8,3 +20 10015680 . G . . END=10015683 GT:DP:GQ:MIN_DP:PL ./.:11:27:11:0,27,405 ./.:36:99:35:0,105,1051 +20 10015684 . C . . END=10015687 GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:36:99:35:0,105,1051 +20 10015688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,400 ./.:38:97:38:0,97,1088 +20 10015689 . G . . . GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,292 ./.:39:99:37:0,108,1620 +20 10015690 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,406 ./.:39:99:37:0,108,1620 +20 10015691 . C . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:39:99:37:0,108,1620 +20 10015692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:39:92:39:0,92,1165 +20 10015693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:11:0,30,450 ./.:39:99:36:0,108,1000 +20 10015694 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:23:12:0,23,389 ./.:39:99:36:0,108,1000 +20 10015695 . C . . END=10015697 GT:DP:GQ:MIN_DP:PL ./.:12:27:12:0,27,405 ./.:39:99:36:0,108,1000 +20 10015698 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:23:12:0,23,401 ./.:39:99:36:0,108,1000 +20 10015699 . C . . END=10015701 GT:DP:GQ:MIN_DP:PL ./.:12:27:11:0,27,405 ./.:39:99:36:0,108,1000 +20 10015702 . C . . END=10015703 GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:39:99:36:0,108,1000 +20 10015704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:37:95:37:0,95,1119 +20 10015705 . C . . END=10015707 GT:DP:GQ:MIN_DP:PL ./.:12:30:11:0,30,450 ./.:38:99:38:0,105,1112 +20 10015708 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:33:12:0,33,495 ./.:38:99:38:0,105,1112 +20 10015709 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:38:99:38:0,105,1112 +20 10015710 . G . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:38:97:38:0,97,992 +20 10015711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:41:99:41:0,111,1665 +20 10015712 . T . . . GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:41:94:41:0,94,1174 +20 10015713 . C . . END=10015714 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:40:99:39:0,111,1101 +20 10015715 . C . . END=10015716 GT:DP:GQ:MIN_DP:PL ./.:13:33:13:0,33,495 ./.:40:99:39:0,111,1101 +20 10015717 . T . . END=10015723 GT:DP:GQ:MIN_DP:PL ./.:13:36:13:0,36,540 ./.:40:99:39:0,111,1101 +20 10015724 . G . . END=10015725 GT:DP:GQ:MIN_DP:PL ./.:13:33:12:0,33,495 ./.:40:99:39:0,111,1101 +20 10015726 . G . . . GT:DP:GQ:MIN_DP:PL ./.:12:21:12:0,21,330 ./.:40:99:39:0,111,1101 +20 10015727 . C . . END=10015728 GT:DP:GQ:MIN_DP:PL ./.:14:39:14:0,39,585 ./.:40:99:39:0,111,1101 +20 10015729 . C A, . . BaseQRankSum=1.28;ClippingRankSum=0.00;DP=52;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=133200,37;ReadPosRankSum=-1.448e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:15:42:15:0,42,630,42,630,630 ./.:13,24,0:37:99:.:600,0,373,638,444,1083:10,3,11,13 +20 10015730 . G . . END=10015732 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:43:99:41:0,117,1249 +20 10015733 . T . . END=10015734 GT:DP:GQ:MIN_DP:PL ./.:16:45:16:0,45,675 ./.:43:99:41:0,117,1249 +20 10015735 . C . . END=10015736 GT:DP:GQ:MIN_DP:PL ./.:16:39:16:0,39,585 ./.:43:99:41:0,117,1249 +20 10015737 . G . . . GT:DP:GQ:MIN_DP:PL ./.:16:42:16:0,42,630 ./.:43:99:41:0,117,1249 +20 10015738 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:45:17:0,45,675 ./.:43:99:41:0,117,1249 +20 10015739 . G . . . GT:DP:GQ:MIN_DP:PL ./.:16:48:16:0,48,558 ./.:43:99:41:0,117,1249 +20 10015740 . G . . END=10015742 GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:43:99:41:0,117,1249 +20 10015743 . C . . END=10015747 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:43:99:41:0,117,1249 +20 10015748 . G . . END=10015752 GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,608 ./.:43:99:41:0,117,1249 +20 10015753 . T . . END=10015760 GT:DP:GQ:MIN_DP:PL ./.:21:60:20:0,60,757 ./.:43:99:41:0,117,1249 +20 10015761 . T C, . . BaseQRankSum=-1.982e+00;ClippingRankSum=0.00;DP=61;ExcessHet=3.01;MQRankSum=1.29;RAW_MQandDP=216841,61;ReadPosRankSum=-4.250e-01 GT:AD:DP:GQ:PL:SB ./.:9,13,0:22:99:373,0,284,400,323,723:9,0,12,1 ./.:0,39,0:39:99:1395,117,0,1395,117,1395:0,0,20,19 +20 10015762 . A . . END=10015766 GT:DP:GQ:MIN_DP:PL ./.:23:66:22:0,66,839 ./.:47:99:40:0,107,1212 +20 10015767 . C . . END=10015769 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,906 ./.:47:99:40:0,107,1212 +20 10015770 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:47:99:40:0,107,1212 +20 10015771 . C . . END=10015773 GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015774 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:84:30:0,84,1260 ./.:47:99:40:0,107,1212 +20 10015775 . C . . END=10015779 GT:DP:GQ:MIN_DP:PL ./.:33:90:32:0,90,1350 ./.:47:99:40:0,107,1212 +20 10015780 . C . . END=10015851 GT:DP:GQ:MIN_DP:PL ./.:43:99:36:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:45:77:45:0,77,1567 ./.:47:99:40:0,107,1212 +20 10015853 . C . . END=10015855 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015856 . A . . END=10015857 GT:DP:GQ:MIN_DP:PL ./.:41:94:41:0,94,1440 ./.:47:99:40:0,107,1212 +20 10015858 . G . . END=10015859 GT:DP:GQ:MIN_DP:PL ./.:42:99:41:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015860 . C . . END=10015861 GT:DP:GQ:MIN_DP:PL ./.:42:90:42:0,90,1350 ./.:47:99:40:0,107,1212 +20 10015862 . C . . END=10015865 GT:DP:GQ:MIN_DP:PL ./.:41:81:38:0,81,1215 ./.:47:99:40:0,107,1212 +20 10015866 . T . . END=10015867 GT:DP:GQ:MIN_DP:PL ./.:38:72:37:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015868 . G . . END=10015885 GT:DP:GQ:MIN_DP:PL ./.:27:63:23:0,63,945 ./.:47:99:40:0,107,1212 +20 10015886 . G . . END=10015889 GT:DP:GQ:MIN_DP:PL ./.:27:72:25:0,72,1080 ./.:47:99:40:0,107,1212 +20 10015890 . A . . END=10015895 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:47:99:40:0,107,1212 +20 10015896 . G . . END=10015907 GT:DP:GQ:MIN_DP:PL ./.:34:90:30:0,90,1180 ./.:47:99:40:0,107,1212 +20 10015908 . C . . END=10015977 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:47:99:40:0,107,1212 +20 10015978 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:97:37:0,97,1135 +20 10015979 . G . . END=10015986 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:35:0,99,1118 +20 10015987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:87:38:0,87,1138 +20 10015988 . A . . END=10015991 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:96:35:0,96,1440 +20 10015992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:37:0,99,1485 +20 10015993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:96:35:0,96,1440 +20 10015994 . C . . END=10016014 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:35:0,99,1030 +20 10016015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:87:36:0,87,1088 +20 10016016 . C . . END=10016018 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:36:0,99,1485 +20 10016019 . C . . END=10016020 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:96:36:0,96,1440 +20 10016021 . C . . END=10016022 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:37:0,99,1485 +20 10016023 . A . . END=10016026 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:90:35:0,90,1350 +20 10016027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:84:34:0,84,1260 +20 10016028 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:75:34:0,75,1007 +20 10016029 . T . . END=10016030 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1305 +20 10016031 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:35:0,90,1350 +20 10016032 . A . . END=10016034 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:33:0,87,983 +20 10016035 . C . . END=10016041 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:31:0,90,992 +20 10016042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:77:32:0,77,960 +20 10016043 . C . . END=10016046 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:96:32:0,96,992 +20 10016047 . A . . END=10016048 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:99:34:0,102,1071 +20 10016049 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:34:0,90,1012 +20 10016050 . T . . END=10016056 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1093 +20 10016057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:83:36:0,83,1107 +20 10016058 . G . . END=10016062 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:99:34:0,102,1054 +20 10016063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:92:35:0,92,1103 +20 10016064 . A . . END=10016084 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:35:0,99,1485 +20 10016085 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:96:40:0,96,1238 +20 10016086 . G . . END=10016206 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:53:99:38:0,106,1212 +20 10016207 . C G, . . BaseQRankSum=1.27;ClippingRankSum=0.00;DP=93;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=208800,58;ReadPosRankSum=-1.090e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:35:0,99,1485,99,1485,1485 ./.:30,28,0:58:99:.:688,0,722,778,806,1583:11,19,15,13 +20 10016208 . T . . END=10016403 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:47:99:39:0,106,1245 +20 10016404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:91:38:0,91,1136 +20 10016405 . T . . END=10016424 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:99:37:0,99,1145 +20 10016425 . T . . END=10016431 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:35:0,93,1395 +20 10016432 . A . . END=10016442 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:35:0,99,1142 +20 10016443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:36:0,93,1102 +20 10016444 . C . . END=10016458 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1099 +20 10016459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:97:36:0,97,1094 +20 10016460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:84:36:0,84,1033 +20 10016461 . A . . END=10016468 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:35:0,99,1485 +20 10016469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:81:35:0,81,1051 +20 10016470 . T . . END=10016481 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:34:0,99,1047 +20 10016482 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:85:35:0,85,1042 +20 10016483 . C . . END=10016491 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:33:0,90,1350 +20 10016492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:74:35:0,74,1062 +20 10016493 . C . . END=10016498 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:93:33:0,93,1395 +20 10016499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:88:33:0,88,1008 +20 10016500 . T . . END=10016501 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:90:33:0,90,1350 +20 10016502 . T . . END=10016503 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:82:33:0,82,938 +20 10016504 . A . . END=10016506 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:31:0,90,1350 +20 10016507 . T . . END=10016528 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:81:29:0,81,874 +20 10016529 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:90:31:0,90,1350 +20 10016530 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:78:31:0,78,861 +20 10016531 . A . . END=10016532 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:93:34:0,93,1395 +20 10016533 . C . . END=10016535 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1032 +20 10016536 . G . . END=10016537 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:31:0,93,936 +20 10016538 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:60:32:0,60,939 +20 10016539 . C . . END=10016540 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:31:0,93,960 +20 10016541 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:99:33:0,99,1051 +20 10016542 . C . . END=10016545 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:93:33:0,93,1395 +20 10016546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:84:33:0,84,1015 +20 10016547 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:52:33:0,52,954 +20 10016548 . A . . END=10016552 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:33:0,90,1350 +20 10016553 . A . . END=10016557 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:36:0,99,1485 +20 10016558 . G . . END=10016559 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:92:36:0,92,1089 +20 10016560 . T . . END=10016577 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:35:0,100,1067 +20 10016578 . T . . END=10016579 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:96:38:0,96,1440 +20 10016580 . G . . END=10016600 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,99,1071 +20 10016601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:94:38:0,94,1090 +20 10016602 . G . . END=10016607 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:35:0,102,1530 +20 10016608 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:89:38:0,89,1140 +20 10016609 . G . . END=10016624 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:36:0,102,1120 +20 10016625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:94:37:0,94,1120 +20 10016626 . G . . END=10016686 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:42:99:35:0,99,1133 +20 10016687 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:90:40:0,90,1180 +20 10016688 . C . . END=10016703 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:41:99:36:0,99,1485 +20 10016704 . T . . END=10016711 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:93:34:0,93,1123 +20 10016712 . C . . END=10016725 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:36:99:33:0,99,996 +20 10016726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:90:37:0,90,1065 +20 10016727 . G . . END=10016757 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,101,1110 +20 10016758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:40:87:40:0,87,1161 +20 10016759 . G . . END=10016785 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:99:36:0,99,1123 +20 10016786 . C . . END=10016789 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:39:90:37:0,90,1350 +20 10016790 . G . . END=10016797 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:87:30:0,87,1305 +20 10016798 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:90:32:0,90,1350 +20 10016799 . G . . END=10016800 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:30:87:29:0,87,900 +20 10016801 . C . . END=10016802 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:31:90:30:0,90,919 +20 10016803 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:29:87:29:0,87,911 +20 10016804 . T . . END=10016808 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:93:32:0,93,990 +20 10016809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:34:0,87,993 +20 10016810 . G . . END=10016823 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:92:31:0,92,903 +20 10016824 . C . . END=10016827 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:99:33:0,99,988 +20 10016828 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:80:32:0,80,952 +20 10016829 . G . . END=10016840 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:37:99:33:0,99,988 +20 10016841 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:94:38:0,94,1126 +20 10016842 . G . . END=10016862 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:38:99:36:0,99,1118 +20 10016863 . G . . END=10016869 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:34:0,90,1350 +20 10016870 . C . . END=10016871 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:87:34:0,87,1305 +20 10016872 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:68:34:0,68,1017 +20 10016873 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:87:33:0,87,1305 +20 10016874 . T . . END=10016876 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:34:0,90,1067 +20 10016877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:87:34:0,87,1305 +20 10016878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:33:76:33:0,76,970 +20 10016879 . T . . END=10016890 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:32:81:31:0,81,1215 +20 10016891 . A . . END=10016898 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:34:90:32:0,90,1040 +20 10016899 . T . . END=10016901 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:99:33:0,99,1089 +20 10016902 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:35:90:35:0,90,1074 +20 10016903 . A . . END=10017078 GT:DP:GQ:MIN_DP:PL ./.:79:99:35:0,99,1485 ./.:56:99:35:0,99,1145 +20 10017079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:87:57:0,87,1738 ./.:56:99:35:0,99,1145 +20 10017080 . A . . END=10017228 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:56:99:35:0,99,1145 +20 10017229 . C . . END=10017232 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:96:36:0,96,1440 +20 10017233 . T . . END=10017239 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:99:36:0,99,1485 +20 10017240 . A . . END=10017246 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:93:33:0,93,1395 +20 10017247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:88:33:0,88,996 +20 10017248 . G . . END=10017261 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:90:31:0,90,1350 +20 10017262 . G . . END=10017265 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:84:31:0,84,1260 +20 10017266 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:74:30:0,74,890 +20 10017267 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:84:30:0,84,1260 +20 10017268 . T . . END=10017273 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:78:30:0,78,910 +20 10017274 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:81:30:0,81,1215 +20 10017275 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:79:30:0,79,935 +20 10017276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:29:81:29:0,81,1215 +20 10017277 . G . . END=10017278 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:78:29:0,78,1170 +20 10017279 . C . . END=10017284 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:81:29:0,81,1215 +20 10017285 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:50:31:0,50,821 +20 10017286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:80:32:0,80,950 +20 10017287 . C . . END=10017288 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10017289 . A . . END=10017292 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:87:31:0,87,1305 +20 10017293 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:90:32:0,90,1350 +20 10017294 . A . . END=10017295 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:87:31:0,87,1305 +20 10017296 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:56:32:0,56,894 +20 10017297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10017298 . T . . END=10017300 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:84:30:0,84,1260 +20 10017301 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:75:31:0,75,910 +20 10017302 . C . . END=10017303 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:87:31:0,87,1305 +20 10017304 . A . . END=10017306 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:90:32:0,90,1350 +20 10017307 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:84:32:0,84,987 +20 10017308 . G . . END=10017309 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10017310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:75:33:0,75,978 +20 10017311 . G . . END=10017322 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10017323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:88:33:0,88,1014 +20 10017324 . T . . END=10017327 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:90:33:0,90,1350 +20 10017328 . A . . END=10017330 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:87:33:0,87,1305 +20 10017331 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:90:34:0,90,1350 +20 10017332 . A . . END=10017334 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:84:33:0,84,1001 +20 10017335 . C . . END=10017338 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:90:33:0,90,1350 +20 10017339 . A . . END=10017340 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:87:33:0,87,1305 +20 10017341 . T . . END=10017345 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:93:35:0,93,1395 +20 10017346 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:88:35:0,88,1030 +20 10017347 . A . . END=10017358 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:92:31:0,92,959 +20 10017359 . G . . END=10017361 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,982 +20 10017362 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:96:32:0,96,945 +20 10017363 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:82:31:0,82,895 +20 10017364 . C . . END=10017367 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,980 +20 10017368 . T . . END=10017372 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:92:33:0,92,1019 +20 10017373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:33:67:33:0,67,904 +20 10017374 . C . . END=10017376 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:96:34:0,96,1440 +20 10017377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:85:34:0,85,945 +20 10017378 . T . . END=10017380 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:96:32:0,96,940 +20 10017381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:66:34:0,66,925 +20 10017382 . C . . END=10017388 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:99:33:0,99,922 +20 10017389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:32:80:32:0,80,916 +20 10017390 . T . . END=10017393 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:36:0,105,1575 +20 10017394 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:92:37:0,92,1077 +20 10017395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:37:0,108,1620 +20 10017396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:98:38:0,98,1104 +20 10017397 . G . . END=10017426 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:99:36:0,99,1127 +20 10017427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:31:93:31:0,93,944 +20 10017428 . T . . END=10017454 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:38:99:36:0,102,1096 +20 10017455 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:91:36:0,91,1024 +20 10017456 . C . . END=10017457 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:99:35:0,105,1048 +20 10017458 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:82:37:0,82,1015 +20 10017459 . C . . END=10017473 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:37:99:35:0,99,1069 +20 10017474 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:34:83:34:0,83,946 +20 10017475 . G . . END=10017478 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:36:90:34:0,90,1350 +20 10017479 . G . . END=10017488 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:35:84:30:0,84,1260 +20 10017489 . G . . END=10017497 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:30:78:29:0,78,1170 +20 10017498 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:29:81:29:0,81,1215 +20 10017499 . G . . END=10017504 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:27:72:26:0,72,1080 +20 10017505 . G . . END=10017519 GT:DP:GQ:MIN_DP:PL ./.:61:99:45:0,109,1710 ./.:24:63:22:0,63,649 +20 10017520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:51:64:51:0,64,1772 ./.:24:63:22:0,63,649 +20 10017521 . C . . END=10017528 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:24:63:22:0,63,649 +20 10017529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:22:0,57,855 +20 10017530 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:45:22:0,45,597 +20 10017531 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:21:0,57,855 +20 10017532 . T . . END=10017535 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:54:21:0,54,810 +20 10017536 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:48:21:0,48,720 +20 10017537 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:51:22:0,51,765 +20 10017538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:54:22:0,54,810 +20 10017539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:52:21:0,52,608 +20 10017540 . C . . END=10017542 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:51:20:0,51,765 +20 10017543 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:49:20:0,49,563 +20 10017544 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:22:0,57,855 +20 10017545 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:52:22:0,52,651 +20 10017546 . A . . END=10017549 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:19:0,57,598 +20 10017550 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:33:19:0,33,419 +20 10017551 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:56:19:0,56,530 +20 10017552 . T . . END=10017553 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:60:20:0,60,591 +20 10017554 . G . . END=10017560 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:20:0,57,855 +20 10017561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:55:22:0,55,677 +20 10017562 . A . . END=10017563 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:57:21:0,57,855 +20 10017564 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:41:19:0,41,557 +20 10017565 . C . . END=10017566 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:54:19:0,54,810 +20 10017567 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:20:0,57,855 +20 10017568 . G . . END=10017572 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:60:20:0,60,637 +20 10017573 . C . . END=10017576 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:57:19:0,57,610 +20 10017577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,592 +20 10017578 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:57:20:0,57,855 +20 10017579 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:54:20:0,54,810 +20 10017580 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:36:20:0,36,531 +20 10017581 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,621 +20 10017582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017583 . G . . END=10017585 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:48:19:0,48,720 +20 10017586 . T . . END=10017587 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017588 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:47:20:0,47,617 +20 10017589 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:19:45:19:0,45,675 +20 10017590 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:48:20:0,48,720 +20 10017591 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:51:20:0,51,765 +20 10017592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:46:20:0,46,566 +20 10017593 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:39:20:0,39,587 +20 10017594 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:54:20:0,54,810 +20 10017595 . G . . END=10017600 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:22:60:20:0,60,620 +20 10017601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:20:49:20:0,49,537 +20 10017602 . C . . END=10017604 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:21:63:21:0,63,632 +20 10017605 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:23:58:23:0,58,691 +20 10017606 . A . . END=10017607 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:75:25:0,75,792 +20 10017608 . A . . END=10017609 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:81:28:0,81,1215 +20 10017610 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:66:28:0,66,841 +20 10017611 . A . . END=10017612 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:28:84:28:0,84,873 +20 10017613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:78:26:0,78,819 +20 10017614 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:26:60:26:0,60,775 +20 10017615 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:29:74:29:0,74,852 +20 10017616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:29:87:29:0,87,889 +20 10017617 . A . . END=10017618 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:30:90:30:0,90,951 +20 10017619 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:30:89:30:0,89,910 +20 10017620 . A . . END=10017631 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:90:30:0,90,967 +20 10017632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:35:75:35:0,75,994 +20 10017633 . G . . END=10017634 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:99:35:0,99,1485 +20 10017635 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:90:34:0,90,1013 +20 10017636 . G . . END=10017668 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:38:99:34:0,102,1059 +20 10017669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:43:91:43:0,91,1279 +20 10017670 . G . . END=10017752 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:45:99:37:0,105,1250 +20 10017753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:92:40:0,92,1163 +20 10017754 . G . . END=10017755 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:99:40:0,99,1485 +20 10017756 . T . . END=10017762 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:37:93:36:0,93,1395 +20 10017763 . T . . END=10017775 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:99:34:0,99,1148 +20 10017776 . A G, . . BaseQRankSum=-2.641e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=0.038 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:45:0,114,1710,114,1710,1710 ./.:19,18,0:37:99:.:441,0,519,498,573,1072:11,8,10,8 +20 10017777 . G . . END=10017954 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:47:99:38:0,100,1204 +20 10017955 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:42:97:42:0,97,1211 +20 10017956 . A . . END=10017968 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:42:99:40:0,111,1665 +20 10017969 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:95:40:0,95,1207 +20 10017970 . A . . END=10017971 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:41:99:40:0,107,1218 +20 10017972 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:94:40:0,94,1221 +20 10017973 . C . . END=10017988 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:41:99:39:0,99,1177 +20 10017989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:96:36:0,96,1042 +20 10017990 . C . . END=10017991 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:39:89:39:0,89,1173 +20 10017992 . C . . END=10017995 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:36:93:31:0,93,972 +20 10017996 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:79:32:0,79,971 +20 10017997 . C . . END=10017998 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:93:33:0,93,1395 +20 10017999 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:34:70:34:0,70,1002 +20 10018000 . A . . END=10018009 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:33:83:32:0,83,998 +20 10018010 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:32:0,90,1350 +20 10018011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:76:31:0,76,954 +20 10018012 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:93:31:0,93,1023 +20 10018013 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:84:32:0,84,963 +20 10018014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:32:0,90,1350 +20 10018015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:31:82:31:0,82,935 +20 10018016 . C . . END=10018018 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:32:90:31:0,90,1350 +20 10018019 . C . . END=10018037 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:35:99:33:0,99,1053 +20 10018038 . C . . END=10018049 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:37:90:35:0,90,1085 +20 10018050 . G . . END=10018070 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:39:99:36:0,100,1118 +20 10018071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:40:92:40:0,92,1204 +20 10018072 . T . . END=10018157 GT:DP:GQ:MIN_DP:PL ./.:77:99:45:0,114,1710 ./.:47:99:42:0,100,1365 +20 10018158 . G C, . . BaseQRankSum=5.21;ClippingRankSum=0.00;DP=142;ExcessHet=3.01;MQRankSum=1.12;RAW_MQandDP=508969,142;ReadPosRankSum=0.516 GT:AD:DP:GQ:PL:SB ./.:40,48,0:88:99:1668,0,1165,1787,1309,3096:18,22,20,28 ./.:0,53,0:53:99:1660,159,0,1660,159,1660:0,0,27,26 +20 10018159 . C . . END=10018214 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:52:99:48:0,105,1381 +20 10018215 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:51:80:51:0,80,1405 +20 10018216 . C . . END=10018301 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:48:99:44:0,103,1413 +20 10018302 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:45:92:45:0,92,1341 +20 10018303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:99:43:0,120,1800 +20 10018304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:44:92:44:0,92,1346 +20 10018305 . T . . END=10018321 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:99:40:0,99,1220 +20 10018322 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:97:43:0,97,1309 +20 10018323 . A . . END=10018455 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:45:99:40:0,107,1255 +20 10018456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:43:97:43:0,97,1265 +20 10018457 . T . . END=10018504 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:48:99:43:0,119,1324 +20 10018505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:44:97:44:0,97,1276 +20 10018506 . T . . END=10018554 GT:DP:GQ:MIN_DP:PL ./.:82:99:68:0,120,1800 ./.:53:99:44:0,120,1800 +20 10018555 . G A, . . BaseQRankSum=0.301;ClippingRankSum=0.00;DP=137;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=493200,137;ReadPosRankSum=0.463 GT:AD:DP:GQ:PL:SB ./.:35,45,0:80:99:1596,0,1211,1701,1347,3048:20,15,21,24 ./.:33,22,0:55:99:490,0,809,589,874,1463:19,14,11,11 +20 10018556 . C . . END=10018699 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:55:99:46:0,115,1531 +20 10018700 . T C, . . BaseQRankSum=-2.659e+00;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=0.244 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:83:99:70:0,120,1800,120,1800,1800 ./.:23,23,0:46:99:.:560,0,626,629,695,1325:7,16,12,11 +20 10018701 . A . . END=10018873 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:54:99:46:0,115,1455 +20 10018874 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:49:74:49:0,74,1298 +20 10018875 . T . . END=10018923 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:47:99:41:0,101,1286 +20 10018924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:98:44:0,98,1327 +20 10018925 . A . . END=10018931 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:42:0,111,1318 +20 10018932 . T . . END=10018933 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:42:71:41:0,71,1207 +20 10018934 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:43:0,110,1324 +20 10018935 . A . . END=10018936 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:95:43:0,95,1230 +20 10018937 . G . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:99:43:0,120,1800 +20 10018938 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:43:82:43:0,82,1207 +20 10018939 . G . . END=10019050 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:99:39:0,101,1233 +20 10019051 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:44:98:44:0,98,1364 +20 10019052 . G . . END=10019092 GT:DP:GQ:MIN_DP:PL ./.:83:99:70:0,120,1800 ./.:45:99:41:0,117,1347 +20 10019093 . A G, . . BaseQRankSum=1.71;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=1.07;RAW_MQandDP=422041,118;ReadPosRankSum=-2.300e-01 GT:AD:DP:GQ:PL:SB ./.:33,36,0:69:99:1273,0,1104,1371,1212,2584:15,18,19,17 ./.:2,46,0:48:93:1332,93,0,1338,137,1381:1,1,25,21 +20 10019094 . C . . END=10019229 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:47:99:39:0,102,1224 +20 10019230 . A . . END=10019235 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:93:36:0,93,1395 +20 10019236 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:79:37:0,79,1062 +20 10019237 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:86:37:0,86,1106 +20 10019238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:38:0,99,1485 +20 10019239 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:96:37:0,96,1440 +20 10019240 . G . . END=10019241 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:36:0,99,1485 +20 10019242 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:96:36:0,96,1097 +20 10019243 . A . . END=10019244 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,99,1485 +20 10019245 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:97:38:0,97,1125 +20 10019246 . A . . END=10019255 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:39:0,100,1147 +20 10019256 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:90:39:0,90,1156 +20 10019257 . C . . END=10019426 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:47:99:39:0,104,1201 +20 10019427 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:88:42:0,88,1127 +20 10019428 . C . . END=10019439 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:39:0,102,1242 +20 10019440 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:92:39:0,92,1196 +20 10019441 . A . . END=10019448 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,102,1530 +20 10019449 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:77:36:0,77,1107 +20 10019450 . C . . END=10019452 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:36:0,99,1485 +20 10019453 . C . . END=10019462 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:93:35:0,93,1395 +20 10019463 . G . . END=10019465 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:99:34:0,99,1177 +20 10019466 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:95:37:0,95,1110 +20 10019467 . A . . END=10019469 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,108,1620 +20 10019470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:90:35:0,90,1082 +20 10019471 . G . . END=10019486 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:99:35:0,104,1074 +20 10019487 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:82:39:0,82,1137 +20 10019488 . G . . END=10019490 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:40:0,111,1665 +20 10019491 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:41:97:41:0,97,1197 +20 10019492 . T . . END=10019543 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:37:0,101,1111 +20 10019544 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:96:38:0,96,1098 +20 10019545 . T . . END=10019549 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:37:0,102,1530 +20 10019550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:92:38:0,92,1111 +20 10019551 . A . . END=10019557 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:37:99:36:0,102,1530 +20 10019558 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:87:38:0,87,1114 +20 10019559 . A . . END=10019614 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:99:35:0,99,1094 +20 10019615 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:84:36:0,84,1053 +20 10019616 . A . . END=10019758 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:36:0,99,1100 +20 10019759 . T . . END=10019761 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:96:37:0,96,1440 +20 10019762 . A . . END=10019768 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:40:99:37:0,99,1485 +20 10019769 . T . . END=10019774 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:96:33:0,96,1440 +20 10019775 . A . . END=10019776 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10019777 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:72:34:0,72,1031 +20 10019778 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:96:34:0,96,1440 +20 10019779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:85:32:0,85,957 +20 10019780 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10019781 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:81:33:0,81,976 +20 10019782 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10019783 . C . . END=10019784 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:87:33:0,87,1305 +20 10019785 . A . . END=10019786 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:34:0,90,1350 +20 10019787 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:87:33:0,87,1305 +20 10019788 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10019789 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:87:34:0,87,1305 +20 10019790 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:90:35:0,90,1350 +20 10019791 . T . . END=10019800 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:81:31:0,81,1215 +20 10019801 . T . . END=10019808 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:78:29:0,78,1170 +20 10019809 . T . . END=10019812 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:81:32:0,81,1215 +20 10019813 . T . . END=10019815 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:78:31:0,78,1170 +20 10019816 . A . . END=10019821 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:81:29:0,81,1215 +20 10019822 . A . . END=10019824 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:90:30:0,90,903 +20 10019825 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:87:30:0,87,1305 +20 10019826 . T . . END=10019830 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:90:31:0,90,1350 +20 10019831 . C . . END=10019832 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10019833 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:80:33:0,80,958 +20 10019834 . T . . END=10019840 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10019841 . G . . END=10019854 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:38:99:34:0,99,1068 +20 10019855 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:41:95:41:0,95,1139 +20 10019856 . A . . END=10019893 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:43:99:41:0,110,1235 +20 10019894 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:43:86:43:0,86,1269 +20 10019895 . A . . END=10019926 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:44:99:43:0,115,1304 +20 10019927 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:95:42:0,95,1251 +20 10019928 . C . . END=10019967 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:42:99:39:0,99,1215 +20 10019968 . C . . END=10019973 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:39:90:35:0,90,1350 +20 10019974 . A . . END=10019976 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:35:87:35:0,87,1305 +20 10019977 . A . . END=10019981 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:34:0,90,1350 +20 10019982 . A . . END=10019998 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:32:81:28:0,81,1215 +20 10019999 . C . . END=10020002 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:78:27:0,78,1170 +20 10020003 . A . . END=10020006 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10020007 . A . . END=10020010 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:75:27:0,75,892 +20 10020011 . T . . END=10020017 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10020018 . T . . END=10020021 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:28:75:28:0,75,872 +20 10020022 . A . . END=10020025 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:30:81:29:0,81,1215 +20 10020026 . G . . END=10020030 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10020031 . C . . END=10020041 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:99:33:0,99,1045 +20 10020042 . G . . END=10020056 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:34:90:33:0,90,1350 +20 10020057 . T . . END=10020062 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10020063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:36:76:36:0,76,1075 +20 10020064 . C . . END=10020228 GT:DP:GQ:MIN_DP:PL ./.:79:99:60:0,120,1800 ./.:46:99:35:0,99,1061 +20 10020229 . G A, . . BaseQRankSum=5.79;ClippingRankSum=0.00;DP=127;ExcessHet=3.01;MQRankSum=0.104;RAW_MQandDP=452210,127;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL:SB ./.:38,44,0:82:99:1567,0,1130,1682,1263,2944:22,16,24,20 ./.:30,15,0:45:99:368,0,693,456,738,1194:15,15,9,6 +20 10020230 . T . . END=10020324 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:43:99:38:0,99,1202 +20 10020325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:82:38:0,82,1125 +20 10020326 . A . . END=10020337 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:90:32:0,90,1350 +20 10020338 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:79:32:0,79,941 +20 10020339 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020340 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:82:31:0,82,923 +20 10020341 . T . . END=10020343 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:32:0,90,1350 +20 10020344 . C . . END=10020346 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10020347 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:56:35:0,56,973 +20 10020348 . G . . END=10020349 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:35:0,102,1530 +20 10020350 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:90:35:0,90,1034 +20 10020351 . C . . END=10020412 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:35:0,99,1067 +20 10020413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:98:39:0,98,1205 +20 10020414 . A . . END=10020428 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:35:0,99,1158 +20 10020429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:81:33:0,81,990 +20 10020430 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:36:0,99,1485 +20 10020431 . A . . END=10020433 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10020434 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:99:38:0,99,1485 +20 10020435 . A . . END=10020441 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:90:34:0,90,1350 +20 10020442 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:66:34:0,66,978 +20 10020443 . C . . END=10020450 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:31:0,90,1350 +20 10020451 . G . . END=10020454 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:87:29:0,87,953 +20 10020455 . A . . END=10020464 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:31:0,90,946 +20 10020465 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:85:32:0,85,945 +20 10020466 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:32:0,90,1350 +20 10020467 . A . . END=10020469 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:84:32:0,84,1260 +20 10020470 . T . . END=10020471 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:34:0,90,1350 +20 10020472 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:86:35:0,86,1051 +20 10020473 . C . . END=10020475 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:33:0,93,1395 +20 10020476 . A . . END=10020487 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:34:0,99,1086 +20 10020488 . A . . END=10020491 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10020492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:89:36:0,89,1087 +20 10020493 . A . . END=10020494 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:91:34:0,91,1013 +20 10020495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:88:33:0,88,997 +20 10020496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10020497 . T . . END=10020502 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:33:0,99,1007 +20 10020503 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:75:34:0,75,1010 +20 10020504 . T . . END=10020505 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:85:36:0,85,1039 +20 10020506 . A . . END=10020521 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:90:33:0,90,1350 +20 10020522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:73:36:0,73,1022 +20 10020523 . T . . END=10020524 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1440 +20 10020525 . G . . END=10020526 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:36:0,102,1530 +20 10020527 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:92:36:0,92,1060 +20 10020528 . T . . END=10020532 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:33:0,99,1072 +20 10020533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:90:34:0,90,1034 +20 10020534 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020535 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:91:34:0,91,1017 +20 10020536 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020537 . C . . END=10020540 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:32:0,96,979 +20 10020541 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:82:33:0,82,897 +20 10020542 . C . . END=10020546 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:90:33:0,90,1012 +20 10020547 . G . . END=10020548 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:85:34:0,85,972 +20 10020549 . A . . END=10020559 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:91:34:0,91,1038 +20 10020560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:79:31:0,79,931 +20 10020561 . A . . END=10020566 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:31:0,93,927 +20 10020567 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:54:32:0,54,883 +20 10020568 . C . . END=10020569 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:90:30:0,90,832 +20 10020570 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:85:33:0,85,985 +20 10020571 . T . . END=10020576 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:32:0,93,943 +20 10020577 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:81:32:0,81,908 +20 10020578 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:93:33:0,93,1395 +20 10020579 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:79:32:0,79,884 +20 10020580 . T . . END=10020581 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020582 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:88:33:0,88,983 +20 10020583 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:72:33:0,72,911 +20 10020584 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:96:32:0,96,961 +20 10020585 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10020586 . T . . END=10020587 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:80:33:0,80,937 +20 10020588 . A . . END=10020589 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10020590 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:99:33:0,99,1003 +20 10020591 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,977 +20 10020592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10020593 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:77:36:0,77,966 +20 10020594 . A . . END=10020595 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:36:0,102,1530 +20 10020596 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:93:36:0,93,1395 +20 10020597 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,952 +20 10020598 . A . . END=10020601 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:93:35:0,93,1395 +20 10020602 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:70:35:0,70,915 +20 10020603 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:87:35:0,87,1305 +20 10020604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:61:35:0,61,923 +20 10020605 . A . . END=10020614 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:80:32:0,80,908 +20 10020615 . G . . END=10020618 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:71:30:0,71,866 +20 10020619 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:39:28:0,39,725 +20 10020620 . T . . END=10020634 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:75:26:0,75,803 +20 10020635 . T . . END=10020638 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:81:27:0,81,841 +20 10020639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:68:27:0,68,842 +20 10020640 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:78:27:0,78,1170 +20 10020641 . A . . END=10020652 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:81:28:0,81,846 +20 10020653 . T . . END=10020667 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:72:27:0,72,837 +20 10020668 . G . . END=10020669 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:64:27:0,64,762 +20 10020670 . A . . END=10020674 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:72:27:0,72,1080 +20 10020675 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:58:28:0,58,793 +20 10020676 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:26:77:26:0,77,761 +20 10020677 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:26:46:26:0,46,672 +20 10020678 . A . . END=10020681 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:75:26:0,75,1125 +20 10020682 . A . . END=10020696 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:81:29:0,81,1215 +20 10020697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:78:32:0,78,954 +20 10020698 . T . . END=10020699 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:84:31:0,84,1260 +20 10020700 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:74:30:0,74,907 +20 10020701 . C . . END=10020702 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:84:28:0,84,917 +20 10020703 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:27:64:27:0,64,811 +20 10020704 . C . . END=10020707 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:81:28:0,81,1215 +20 10020708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:53:28:0,53,852 +20 10020709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:68:28:0,68,857 +20 10020710 . C . . END=10020714 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:28:81:27:0,81,903 +20 10020715 . G . . END=10020717 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:29:72:26:0,72,841 +20 10020718 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:58:30:0,58,917 +20 10020719 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:30:74:30:0,74,931 +20 10020720 . A . . END=10020721 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:93:31:0,93,982 +20 10020722 . G . . END=10020723 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:78:32:0,78,935 +20 10020724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:80:32:0,80,981 +20 10020725 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:90:31:0,90,1350 +20 10020726 . A . . END=10020728 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:87:32:0,87,1305 +20 10020729 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:61:32:0,61,932 +20 10020730 . G . . END=10020742 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:81:30:0,81,1215 +20 10020743 . T . . END=10020744 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:90:32:0,90,1350 +20 10020745 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:31:64:31:0,64,914 +20 10020746 . G . . END=10020747 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:93:32:0,93,1395 +20 10020748 . A . . END=10020749 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:83:32:0,83,961 +20 10020750 . A . . END=10020751 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:32:90:31:0,90,1350 +20 10020752 . C . . END=10020753 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:33:81:32:0,81,991 +20 10020754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:77:35:0,77,985 +20 10020755 . A . . END=10020757 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:96:35:0,96,1440 +20 10020758 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,105,1575 +20 10020759 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1107 +20 10020760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,102,1530 +20 10020761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:96:37:0,96,1104 +20 10020762 . A . . END=10020789 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:36:0,105,1134 +20 10020790 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:98:40:0,98,1142 +20 10020791 . A . . END=10020815 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:38:0,102,1147 +20 10020816 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:41:96:41:0,96,1176 +20 10020817 . C . . END=10020818 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:40:99:40:0,117,1755 +20 10020819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:96:39:0,96,1150 +20 10020820 . C . . END=10020835 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:39:99:34:0,102,1075 +20 10020836 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1082 +20 10020837 . A . . END=10020845 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:99:35:0,102,1098 +20 10020846 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:96:36:0,96,1051 +20 10020847 . A . . END=10020851 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:36:0,108,1119 +20 10020852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:36:80:36:0,80,1067 +20 10020853 . C . . END=10020854 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,111,1161 +20 10020855 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:35:94:35:0,94,1091 +20 10020856 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:99:37:0,111,1153 +20 10020857 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:37:97:37:0,97,1119 +20 10020858 . T . . END=10020887 GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:38:99:33:0,99,999 +20 10020888 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:42:98:42:0,98,1100 +20 10020889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:42:0,99,1485 ./.:41:99:38:0,102,1123 +20 10020890 . A . . END=10020896 GT:DP:GQ:MIN_DP:PL ./.:42:93:40:0,93,1395 ./.:41:99:38:0,102,1123 +20 10020897 . C . . END=10020900 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:41:99:38:0,102,1123 +20 10020901 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:38:90:38:0,90,1115 +20 10020902 . C . . END=10020905 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:39:99:38:0,99,1485 +20 10020906 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:38:85:38:0,85,1131 +20 10020907 . A . . END=10020917 GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:37:93:33:0,93,1395 +20 10020918 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:37:0,102,1530 ./.:33:86:33:0,86,999 +20 10020919 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:95:45:0,95,1765 ./.:33:93:33:0,93,1395 +20 10020920 . T . . END=10020931 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:32:84:30:0,84,1260 +20 10020932 . G . . END=10020935 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:32:90:31:0,90,1350 +20 10020936 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:32:74:32:0,74,939 +20 10020937 . A . . END=10020940 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:33:96:33:0,96,1440 +20 10020941 . C . . END=10021017 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:42:99:34:0,99,1113 +20 10021018 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:41:87:41:0,87,1078 +20 10021019 . T . . END=10021024 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:41:99:40:0,102,1530 +20 10021025 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:42:93:42:0,93,1222 +20 10021026 . A . . END=10021028 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:99:39:0,101,1174 +20 10021029 . A . . END=10021030 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:94:38:0,94,1108 +20 10021031 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:87:37:0,87,1087 +20 10021032 . A . . END=10021033 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:99:37:0,99,1485 +20 10021034 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:91:36:0,91,1055 +20 10021035 . A . . END=10021036 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:99:37:0,99,1078 +20 10021037 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:95:37:0,95,1095 +20 10021038 . C . . END=10021040 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:99:34:0,100,1058 +20 10021041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:88:34:0,88,1047 +20 10021042 . T . . END=10021043 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10021044 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:91:34:0,91,1019 +20 10021045 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:86:34:0,86,1027 +20 10021046 . T . . END=10021047 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10021048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:85:34:0,85,1018 +20 10021049 . C . . END=10021051 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:96:35:0,96,1440 +20 10021052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10021053 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:89:35:0,89,1059 +20 10021054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:91:34:0,91,1053 +20 10021055 . G . . END=10021056 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:86:34:0,86,1002 +20 10021057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:70:36:0,70,1007 +20 10021058 . T . . END=10021078 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:99:36:0,99,1234 +20 10021079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:98:38:0,98,1138 +20 10021080 . C . . END=10021082 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:99:37:0,100,1121 +20 10021083 . G . . END=10021085 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:91:35:0,91,1080 +20 10021086 . C . . END=10021088 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:87:36:0,87,1305 +20 10021089 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:90:37:0,90,1350 +20 10021090 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:87:37:0,87,1047 +20 10021091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:90:35:0,90,1350 +20 10021092 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:86:35:0,86,946 +20 10021093 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10021094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:69:34:0,69,1008 +20 10021095 . A . . END=10021101 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:32:90:32:0,90,1350 +20 10021102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:99:35:0,99,1485 +20 10021103 . T . . END=10021106 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:93:35:0,93,1395 +20 10021107 . A . . END=10021113 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:99:36:0,99,1485 +20 10021114 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:89:35:0,89,1066 +20 10021115 . T . . END=10021116 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:99:38:0,111,1665 +20 10021117 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:84:39:0,84,1127 +20 10021118 . A . . END=10021256 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:40:99:35:0,99,1103 +20 10021257 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:89:39:0,89,1051 +20 10021258 . T . . END=10021294 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:40:99:36:0,99,1115 +20 10021295 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:98:38:0,98,1138 +20 10021296 . C . . END=10021326 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:40:99:36:0,99,1128 +20 10021327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:96:36:0,96,1440 +20 10021328 . T . . END=10021333 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:99:38:0,99,1485 +20 10021334 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:41:93:41:0,93,1227 +20 10021335 . A . . END=10021492 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:41:99:36:0,102,1161 +20 10021493 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:94:37:0,94,1102 +20 10021494 . T . . END=10021507 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:99:37:0,105,1163 +20 10021508 . T . . END=10021512 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:96:38:0,96,1440 +20 10021513 . T . . END=10021515 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:40:99:40:0,99,1485 +20 10021516 . T . . END=10021517 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:93:37:0,93,1156 +20 10021518 . T . . END=10021523 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:99:33:0,99,1017 +20 10021524 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:93:35:0,93,1395 +20 10021525 . T . . END=10021526 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:99:35:0,99,1485 +20 10021527 . T . . END=10021534 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:36:94:33:0,94,1092 +20 10021535 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:33:83:33:0,83,965 +20 10021536 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:99:34:0,99,1485 +20 10021537 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:32:96:32:0,96,990 +20 10021538 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:33:99:33:0,99,1052 +20 10021539 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:34:86:34:0,86,972 +20 10021540 . T . . END=10021544 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:35:99:34:0,102,993 +20 10021545 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:37:61:37:0,61,979 +20 10021546 . C . . END=10021551 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:99:37:0,106,1172 +20 10021552 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:39:85:39:0,85,1050 +20 10021553 . T . . END=10021555 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:99:38:0,108,1620 +20 10021556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:38:96:38:0,96,1107 +20 10021557 . T . . END=10021569 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:41:99:40:0,111,1665 +20 10021570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:42:89:42:0,89,1080 +20 10021571 . A . . END=10021606 GT:DP:GQ:MIN_DP:PL ./.:79:99:46:0,105,1721 ./.:43:99:40:0,101,1068 +20 10021607 . C . . . GT:DP:GQ:MIN_DP:PL ./.:98:98:98:0,98,3341 ./.:43:99:40:0,101,1068 +20 10021608 . T . . END=10021625 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:43:99:40:0,101,1068 +20 10021626 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:47:86:47:0,86,1215 +20 10021627 . T . . END=10021642 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:45:99:41:0,103,1263 +20 10021643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:92:42:0,92,1196 +20 10021644 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:43:99:43:0,120,1800 +20 10021645 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:89:41:0,89,1148 +20 10021646 . T . . END=10021684 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:50:99:42:0,115,1387 +20 10021685 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:49:82:49:0,82,1272 +20 10021686 . A . . END=10021945 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:50:99:40:0,99,1218 +20 10021946 . T A, . . BaseQRankSum=-1.906e+00;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=2.22 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:54:0,110,1800,110,1800,1800 ./.:21,26,0:47:99:.:666,0,522,729,600,1329:10,11,12,14 +20 10021947 . A . . END=10021989 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:49:99:43:0,101,1413 +20 10021990 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:95:42:0,95,1236 +20 10021991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:77:41:0,77,1138 +20 10021992 . C . . END=10022008 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:99:38:0,107,1286 +20 10022009 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:44:97:44:0,97,1182 +20 10022010 . A . . END=10022279 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:50:99:42:0,101,1311 +20 10022280 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:49:93:49:0,93,1422 +20 10022281 . T . . END=10022298 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:49:99:48:0,111,1370 +20 10022299 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:50:98:50:0,98,1437 +20 10022300 . A . . END=10022337 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:48:99:38:0,108,1620 +20 10022338 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:80:38:0,80,1122 +20 10022339 . T . . END=10022340 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:99:36:0,105,1575 +20 10022341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:97:37:0,97,1107 +20 10022342 . C . . END=10022345 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:99:38:0,105,1575 +20 10022346 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:64:38:0,64,1050 +20 10022347 . T . . END=10022352 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:40:99:39:0,106,1160 +20 10022353 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:39:89:39:0,89,1167 +20 10022354 . C . . END=10022367 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:40:99:38:0,99,1485 +20 10022368 . G . . END=10022369 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:92:37:0,92,1054 +20 10022370 . T . . END=10022373 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:99:36:0,99,1485 +20 10022374 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:96:38:0,96,1062 +20 10022375 . T . . END=10022490 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:45:99:38:0,105,1137 +20 10022491 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:46:92:46:0,92,1336 +20 10022492 . C . . END=10022562 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:44:99:40:0,102,1281 +20 10022563 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:91:41:0,91,1194 +20 10022564 . A . . END=10022604 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:39:99:36:0,99,1143 +20 10022605 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:98:38:0,98,1167 +20 10022606 . G . . END=10022624 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:99:39:0,111,1147 +20 10022625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:93:41:0,93,1236 +20 10022626 . T . . END=10022631 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:43:99:42:0,117,1755 +20 10022632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:98:41:0,98,1268 +20 10022633 . A . . END=10022635 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:99:39:0,117,1196 +20 10022636 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:95:41:0,95,1224 +20 10022637 . T . . END=10022643 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:99:40:0,109,1319 +20 10022644 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:92:42:0,92,1215 +20 10022645 . A . . END=10022693 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:44:99:40:0,108,1176 +20 10022694 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:46:84:46:0,84,1246 +20 10022695 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:45:99:45:0,120,1800 +20 10022696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:43:78:43:0,78,1154 +20 10022697 . T . . END=10022771 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:47:99:44:0,107,1204 +20 10022772 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:51:93:51:0,93,1444 +20 10022773 . T . . END=10022956 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:50:99:39:0,104,1128 +20 10022957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:93:37:0,93,1111 +20 10022958 . G . . END=10022961 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:99:39:0,108,1620 +20 10022962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:92:42:0,92,1153 +20 10022963 . C . . END=10022971 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:42:99:41:0,110,1201 +20 10022972 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:93:41:0,93,1258 +20 10022973 . G . . END=10022974 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:99:39:0,116,1130 +20 10022975 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:40:87:40:0,87,1134 +20 10022976 . G . . END=10022977 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:40:99:40:0,114,1199 +20 10022978 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:40:90:40:0,90,1173 +20 10022979 . T . . END=10023021 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:43:99:40:0,107,1244 +20 10023022 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:43:95:43:0,95,1209 +20 10023023 . T . . END=10023042 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:41:99:39:0,99,1187 +20 10023043 . T . . END=10023045 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:90:35:0,90,1072 +20 10023046 . A . . END=10023053 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:99:33:0,99,1009 +20 10023054 . C . . END=10023060 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:90:32:0,90,1350 +20 10023061 . A . . END=10023063 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:87:34:0,87,1305 +20 10023064 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:90:34:0,90,1350 +20 10023065 . C . . END=10023066 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:87:32:0,87,1305 +20 10023067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:93:34:0,93,1395 +20 10023068 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:82:34:0,82,1017 +20 10023069 . T . . END=10023072 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:93:33:0,93,1395 +20 10023073 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:61:34:0,61,909 +20 10023074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:93:34:0,93,1395 +20 10023075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:85:32:0,85,902 +20 10023076 . C . . END=10023083 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:90:33:0,90,1049 +20 10023084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:87:33:0,87,981 +20 10023085 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:71:33:0,71,908 +20 10023086 . T . . END=10023088 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:93:33:0,93,1395 +20 10023089 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:58:34:0,58,912 +20 10023090 . C . . END=10023095 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:90:32:0,90,988 +20 10023096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:78:32:0,78,908 +20 10023097 . C . . END=10023100 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:90:32:0,90,1350 +20 10023101 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:86:33:0,86,935 +20 10023102 . T . . END=10023108 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:90:34:0,90,1350 +20 10023109 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:78:32:0,78,885 +20 10023110 . A . . END=10023117 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:90:32:0,90,934 +20 10023118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:42:34:0,42,919 +20 10023119 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:35:0,99,1485 +20 10023120 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:96:35:0,96,1440 +20 10023121 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:85:34:0,85,980 +20 10023122 . G . . END=10023124 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:99:37:0,99,1485 +20 10023125 . T . . END=10023134 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:90:34:0,90,1350 +20 10023135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:82:33:0,82,953 +20 10023136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:78:32:0,78,877 +20 10023137 . C . . END=10023140 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:93:32:0,93,963 +20 10023141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:65:33:0,65,881 +20 10023142 . T . . END=10023144 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:34:0,102,1023 +20 10023145 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:79:32:0,79,932 +20 10023146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:96:36:0,96,1037 +20 10023147 . A . . END=10023152 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:99:33:0,99,991 +20 10023153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:92:36:0,92,1076 +20 10023154 . T . . END=10023160 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:99:35:0,102,1036 +20 10023161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:39:93:39:0,93,1155 +20 10023162 . T . . END=10023167 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:39:99:37:0,102,1079 +20 10023168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:40:96:40:0,96,1147 +20 10023169 . T . . END=10023219 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:45:99:40:0,99,1214 +20 10023220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:45:88:45:0,88,1301 +20 10023221 . T . . END=10023378 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:48:99:41:0,101,1249 +20 10023379 . T . . END=10023383 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:90:36:0,90,1350 +20 10023384 . T . . END=10023406 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:31:81:29:0,81,1215 +20 10023407 . G . . END=10023408 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:90:31:0,90,1350 +20 10023409 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:82:33:0,82,999 +20 10023410 . G . . END=10023412 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:90:33:0,90,1350 +20 10023413 . T . . END=10023416 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:99:34:0,99,1485 +20 10023417 . C . . END=10023422 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:96:33:0,96,1440 +20 10023423 . C . . END=10023429 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:99:34:0,99,1027 +20 10023430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:85:34:0,85,1036 +20 10023431 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:99:34:0,102,1083 +20 10023432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:78:34:0,78,1065 +20 10023433 . C . . END=10023434 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:90:34:0,90,1065 +20 10023435 . C . . END=10023437 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:35:0,99,1485 +20 10023438 . A . . END=10023441 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:96:33:0,96,1440 +20 10023442 . G A, . . BaseQRankSum=0.223;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=-5.460e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:54:0,110,1800,110,1800,1800 ./.:1,31,0:32:62:.:964,62,0,967,93,998:1,0,18,13 +20 10023443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:74:33:0,74,1026 +20 10023444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:96:34:0,96,1440 +20 10023445 . G . . END=10023446 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:99:36:0,99,1485 +20 10023447 . C . . END=10023454 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:93:34:0,93,1395 +20 10023455 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:76:35:0,76,1076 +20 10023456 . T . . END=10023466 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:35:0,99,1485 +20 10023467 . A . . END=10023470 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:94:35:0,94,1039 +20 10023471 . T . . END=10023472 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:99:36:0,99,1485 +20 10023473 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:91:36:0,91,1097 +20 10023474 . G . . END=10023483 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:34:0,99,1020 +20 10023484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:87:35:0,87,1053 +20 10023485 . G . . END=10023488 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:34:0,99,1076 +20 10023489 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:70:34:0,70,1027 +20 10023490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:99:34:0,99,1485 +20 10023491 . T . . END=10023493 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:93:35:0,93,1395 +20 10023494 . C . . END=10023495 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:83:34:0,83,1030 +20 10023496 . A . . END=10023498 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:90:33:0,90,1350 +20 10023499 . A . . END=10023503 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:81:31:0,81,1215 +20 10023504 . G . . END=10023506 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:90:35:0,90,1350 +20 10023507 . T . . END=10023511 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:33:87:32:0,87,1305 +20 10023512 . A . . END=10023524 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:31:90:30:0,90,950 +20 10023525 . C . . END=10023526 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:99:33:0,99,1011 +20 10023527 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:32:96:32:0,96,1001 +20 10023528 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:84:34:0,84,926 +20 10023529 . G . . END=10023545 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:34:0,99,986 +20 10023546 . A . . END=10023548 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:93:38:0,93,1395 +20 10023549 . C . . END=10023555 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:84:35:0,84,1260 +20 10023556 . T . . END=10023560 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:36:93:33:0,93,1395 +20 10023561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:99:34:0,99,1485 +20 10023562 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:34:85:34:0,85,1028 +20 10023563 . T . . END=10023571 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:35:99:35:0,105,1090 +20 10023572 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:37:96:37:0,96,1096 +20 10023573 . A . . END=10023603 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:38:99:36:0,102,1142 +20 10023604 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:39:97:39:0,97,1208 +20 10023605 . T . . END=10023688 GT:DP:GQ:MIN_DP:PL ./.:80:99:54:0,110,1800 ./.:50:99:39:0,102,1217 +20 10023689 . G A, . . BaseQRankSum=2.14;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=1.35;RAW_MQandDP=285769,80;ReadPosRankSum=0.764 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:29,51,0:80:99:.:1881,0,946,1968,1099,3067:16,13,26,25 ./.:.:50:99:39:0,102,1217,102,1217,1217 +20 10023690 . G . . END=10023877 GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:50:99:39:0,102,1217 +20 10023878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:44:80:44:0,80,1273 +20 10023879 . A . . END=10024106 GT:DP:GQ:MIN_DP:PL ./.:70:99:57:0,120,1800 ./.:55:99:43:0,104,1309 +20 10024107 . C T, . . BaseQRankSum=5.77;ClippingRankSum=0.00;DP=138;ExcessHet=3.01;MQRankSum=-1.546e+00;RAW_MQandDP=303563,86;ReadPosRankSum=0.329 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:38,48,0:86:99:.:1723,0,1086,1837,1230,3068:21,17,28,20 ./.:.:52:96:52:0,96,1322,96,1322,1322 +20 10024108 . G . . END=10024151 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:48:99:44:0,107,1367 +20 10024152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:46:88:46:0,88,1315 +20 10024153 . T . . END=10024229 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:46:99:38:0,100,1106 +20 10024230 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:43:95:43:0,95,1181 +20 10024231 . A . . END=10024241 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:40:99:37:0,100,1135 +20 10024242 . G . . END=10024243 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:80:36:0,80,1010 +20 10024244 . T . . END=10024254 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:99:38:0,99,1121 +20 10024255 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:38:97:38:0,97,1172 +20 10024256 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:86:39:0,86,1127 +20 10024257 . A . . END=10024259 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:39:99:38:0,99,1485 +20 10024260 . G . . END=10024270 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:91:36:0,91,1058 +20 10024271 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:36:88:36:0,88,1111 +20 10024272 . T . . END=10024274 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:38:93:37:0,93,1395 +20 10024275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:36:84:36:0,84,1096 +20 10024276 . G . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:35:96:35:0,96,1440 +20 10024277 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:34:81:34:0,81,1012 +20 10024278 . T . . END=10024282 GT:DP:GQ:MIN_DP:PL ./.:90:99:57:0,120,1800 ./.:37:93:31:0,93,940 +20 10024283 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:0:62:0,0,1777 ./.:36:48:36:0,48,951 +20 10024284 . T . . END=10024287 GT:DP:GQ:MIN_DP:PL ./.:71:99:65:0,120,1800 ./.:39:81:37:0,81,1215 +20 10024288 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:0:71:0,0,1411 ./.:36:73:36:0,73,1048 +20 10024289 . T . . END=10024293 GT:DP:GQ:MIN_DP:PL ./.:72:99:70:0,120,1800 ./.:38:81:37:0,81,1131 +20 10024294 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:0:69:0,0,1358 ./.:35:37:35:0,37,903 +20 10024295 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,120,1800 ./.:36:75:36:0,75,1125 +20 10024296 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:82:67:0,82,2254 ./.:36:75:36:0,75,1125 +20 10024297 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:65:68:0,65,2188 ./.:36:75:36:0,75,1125 +20 10024298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:37:66:0,37,2037 ./.:36:75:36:0,75,1125 +20 10024299 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:0:62:0,0,1430 ./.:34:69:34:0,69,1035 +20 10024300 . CTT C,CT,CTTTT, . . BaseQRankSum=2.45;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=231195,77;ReadPosRankSum=0.00 GT:AD:DP:GQ:PL:SB ./.:3,4,3,8,0:18:1:122,67,400,91,215,231,19,0,1,156,161,279,257,107,347:1,2,11,4 ./.:7,0,5,0,0:12:65:65,85,180,0,95,80,85,180,95,180,85,180,95,180,180:7,0,1,4 +20 10024301 . T *, . . DP=77 GT:AD:DP:GQ:PL:SB ./.:3,3,0:18:1:122,91,231,161,257,347:1,2,11,4 ./.:7,5,0:12:65:65,0,80,85,95,180:7,0,1,4 +20 10024302 . T *, . . DP=86 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:3,3,0:18:1:.:122,91,231,161,257,347:1,2,11,4 ./.:.:36:0:36:0,0,684,0,684,684 +20 10024303 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:57:67:0,57,855 ./.:33:33:30:0,33,495 +20 10024304 . T . . END=10024307 GT:DP:GQ:MIN_DP:PL ./.:69:63:68:0,63,945 ./.:33:33:30:0,33,495 +20 10024308 . T . . END=10024310 GT:DP:GQ:MIN_DP:PL ./.:70:78:70:0,78,1170 ./.:33:33:30:0,33,495 +20 10024311 . T . . END=10024313 GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:33:33:30:0,33,495 +20 10024314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:31:36:31:0,36,540 +20 10024315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:29:30:29:0,30,450 +20 10024316 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:69:66:0,69,1035 ./.:30:33:30:0,33,495 +20 10024317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:72:64:0,72,1080 ./.:31:36:31:0,36,540 +20 10024318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:63:62:0,63,945 ./.:33:45:33:0,45,675 +20 10024319 . T . . END=10024320 GT:DP:GQ:MIN_DP:PL ./.:63:75:62:0,75,1125 ./.:32:42:31:0,42,630 +20 10024321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:90:62:0,90,1350 ./.:32:42:31:0,42,630 +20 10024322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:69:60:0,69,2100 ./.:30:45:30:0,45,675 +20 10024323 . T . . . GT:DP:GQ:MIN_DP:PL ./.:56:27:56:0,27,1860 ./.:28:54:28:0,54,810 +20 10024324 . G . . . GT:DP:GQ:MIN_DP:PL ./.:53:0:53:0,0,1491 ./.:25:45:25:0,45,733 +20 10024325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:47:33:47:0,33,1611 ./.:22:57:22:0,57,855 +20 10024326 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:58:44:0,58,1605 ./.:22:13:22:0,13,583 +20 10024327 . G . . END=10024338 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:22:60:21:0,60,634 +20 10024339 . C . . END=10024347 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:26:72:25:0,72,808 +20 10024348 . C . . END=10024350 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:28:81:28:0,81,935 +20 10024351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:57:29:0,57,878 +20 10024352 . G . . END=10024357 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:84:28:0,84,853 +20 10024358 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:68:29:0,68,846 +20 10024359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:30:90:30:0,90,982 +20 10024360 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:28:84:28:0,84,898 +20 10024361 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:30:90:30:0,90,934 +20 10024362 . A . . END=10024363 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:87:29:0,87,876 +20 10024364 . T . . END=10024378 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:90:30:0,90,909 +20 10024379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:84:32:0,84,1006 +20 10024380 . C . . END=10024386 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:90:32:0,90,1350 +20 10024387 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:73:32:0,73,954 +20 10024388 . C T, . . BaseQRankSum=-9.240e-01;ClippingRankSum=0.00;DP=67;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=0.267 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:39:0,105,1509,105,1509,1509 ./.:13,14,0:27:99:.:351,0,344,390,386,776:4,9,5,9 +20 10024389 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:73:33:0,73,1021 +20 10024390 . T . . END=10024405 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:93:31:0,93,987 +20 10024406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:74:33:0,74,988 +20 10024407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:96:33:0,96,1440 +20 10024408 . G . . END=10024419 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:99:33:0,99,1052 +20 10024420 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:86:34:0,86,1056 +20 10024421 . C . . END=10024426 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:99:34:0,99,1485 +20 10024427 . C . . END=10024428 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:96:35:0,96,1440 +20 10024429 . C . . END=10024431 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:99:35:0,99,1485 +20 10024432 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,944 +20 10024433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:35:0,102,1530 +20 10024434 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:88:35:0,88,1024 +20 10024435 . T . . END=10024438 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:33:0,99,1043 +20 10024439 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:94:35:0,94,1088 +20 10024440 . G . . END=10024452 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:34:0,101,980 +20 10024453 . C . . END=10024454 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:96:35:0,96,1440 +20 10024455 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:99:36:0,99,1485 +20 10024456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:91:34:0,91,1014 +20 10024457 . C . . END=10024461 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:81:35:0,81,1215 +20 10024462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:75:36:0,75,1125 +20 10024463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:81:38:0,81,1215 +20 10024464 . G . . END=10024467 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:72:35:0,72,1080 +20 10024468 . C . . END=10024470 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:29:69:28:0,69,1035 +20 10024471 . T . . END=10024472 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:75:32:0,75,1125 +20 10024473 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:81:32:0,81,1215 +20 10024474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024475 . T . . END=10024476 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:87:35:0,87,1305 +20 10024477 . T . . END=10024484 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:33:0,90,1350 +20 10024485 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:81:32:0,81,1006 +20 10024486 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:68:34:0,68,1018 +20 10024488 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:34:0,90,1350 +20 10024489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:73:33:0,73,992 +20 10024490 . T . . END=10024497 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:32:0,90,1350 +20 10024498 . A . . END=10024502 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:87:31:0,87,1305 +20 10024503 . G . . END=10024504 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:34:90:33:0,90,1350 +20 10024505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:82:31:0,82,919 +20 10024506 . T . . END=10024507 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:31:90:30:0,90,929 +20 10024508 . A . . END=10024509 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:82:33:0,82,959 +20 10024510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:33:96:33:0,96,1440 +20 10024511 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:66:32:0,66,957 +20 10024512 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:32:96:32:0,96,1049 +20 10024513 . G . . END=10024519 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:99:33:0,99,1011 +20 10024520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:36:91:36:0,91,1049 +20 10024521 . G . . END=10024586 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:34:0,101,1018 +20 10024587 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:46:97:46:0,97,1292 +20 10024588 . G . . END=10024618 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:46:99:41:0,111,1272 +20 10024619 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:96:43:0,96,1228 +20 10024620 . A . . END=10024639 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:39:0,99,1097 +20 10024640 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:98:38:0,98,1151 +20 10024641 . T . . END=10024664 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:99:37:0,104,1150 +20 10024665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:97:40:0,97,1220 +20 10024666 . C . . END=10024671 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:40:0,111,1262 +20 10024672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:80:42:0,80,1185 +20 10024673 . C . . END=10024674 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,120,1800 +20 10024675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:97:42:0,97,1180 +20 10024676 . A . . END=10024687 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:41:0,111,1253 +20 10024688 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:98:43:0,98,1210 +20 10024689 . T . . END=10024714 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:41:0,106,1194 +20 10024715 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1102 +20 10024716 . A . . END=10024720 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:39:0,100,1161 +20 10024721 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:88:40:0,88,1124 +20 10024722 . T . . END=10024725 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:99:40:0,109,1224 +20 10024726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:98:39:0,98,1190 +20 10024727 . G . . END=10024728 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,114,1166 +20 10024729 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:93:40:0,93,1223 +20 10024730 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:99:38:0,114,1159 +20 10024731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:96:40:0,96,1205 +20 10024732 . T . . END=10024949 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:52:99:39:0,113,1201 +20 10024950 . G T, . . BaseQRankSum=0.081;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.132 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:79:99:39:.:.:0,105,1509,105,1509,1509 ./.:17,24,0:41:99:.:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024951 . G T, . . BaseQRankSum=1.14;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=-8.000e-02 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:79:99:39:.:.:0,105,1509,105,1509,1509 ./.:17,24,0:41:99:.:0|1:10024950_G_T:950,0,913,1001,985,1986:8,9,17,7 +20 10024952 . T . . END=10024960 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,108,1285 +20 10024961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:97:43:0,97,1253 +20 10024962 . T . . END=10025052 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:47:99:42:0,101,1265 +20 10025053 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:93:48:0,93,1357 +20 10025054 . A . . END=10025069 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:99:46:0,115,1465 +20 10025070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:44:92:44:0,92,1157 +20 10025071 . G . . END=10025131 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:99:40:0,108,1241 +20 10025132 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:97:39:0,97,1216 +20 10025133 . C . . END=10025143 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,102,1530 +20 10025144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:67:39:0,67,1051 +20 10025145 . A . . END=10025148 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,102,1530 +20 10025149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:96:37:0,96,1440 +20 10025150 . C . . END=10025191 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:37:0,99,1162 +20 10025192 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:87:41:0,87,1171 +20 10025193 . T . . END=10025253 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:38:0,100,1145 +20 10025254 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:97:42:0,97,1280 +20 10025255 . T . . END=10025322 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:99:41:0,101,1269 +20 10025323 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:45:76:45:0,76,1262 +20 10025324 . A . . END=10025503 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:57:99:41:0,106,1429 +20 10025504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:92:42:0,92,1235 +20 10025505 . G . . END=10025518 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:42:99:40:0,102,1530 +20 10025519 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:90:41:0,90,1225 +20 10025520 . T . . END=10025521 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:99:41:0,102,1530 +20 10025522 . T . . END=10025523 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:90:39:0,90,1350 +20 10025524 . A . . END=10025530 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:35:84:34:0,84,1260 +20 10025531 . T . . END=10025532 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:93:36:0,93,1395 +20 10025533 . T . . END=10025555 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:37:99:34:0,99,1206 +20 10025556 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:40:88:40:0,88,1189 +20 10025557 . T . . END=10025560 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,111,1665 +20 10025561 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:89:39:0,89,1192 +20 10025562 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1164 +20 10025563 . C . . END=10025569 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:39:0,102,1194 +20 10025570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:90:39:0,90,1158 +20 10025571 . T . . END=10025573 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,108,1620 +20 10025574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:98:38:0,98,1174 +20 10025575 . T . . END=10025620 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:36:0,100,1147 +20 10025621 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:94:41:0,94,1223 +20 10025622 . A . . END=10025642 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:48:99:41:0,120,1800 +20 10025643 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:51:82:51:0,82,1440 +20 10025644 . A . . END=10026301 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:54:99:38:0,102,1165 +20 10026302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:86:38:0,86,1139 +20 10026303 . A . . END=10026307 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:99:37:0,105,1575 +20 10026308 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:38:85:38:0,85,1136 +20 10026309 . G . . END=10026313 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:99:38:0,111,1178 +20 10026314 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:39:92:39:0,92,1157 +20 10026315 . G . . END=10026347 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:39:0,114,1331 +20 10026348 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:41:92:41:0,92,1279 +20 10026349 . A . . END=10026356 GT:DP:GQ:MIN_DP:PL ./.:79:99:39:0,105,1509 ./.:43:99:42:0,120,1800 +20 10026357 . T C, . . BaseQRankSum=-6.420e-01;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=359117,103;ReadPosRankSum=1.62 GT:AD:DP:GQ:PL:SB ./.:28,35,0:63:99:1195,0,932,1279,1037,2316:10,18,20,15 ./.:19,19,0:38:99:494,0,521,552,578,1130:8,11,11,8 +20 10026358 . A . . END=10026383 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:42:0,102,1231 +20 10026384 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:75:45:0,75,1206 +20 10026385 . A . . END=10026439 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:39:0,111,1254 +20 10026440 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:86:40:0,86,1172 +20 10026441 . A . . END=10026461 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:99:37:0,99,1485 +20 10026462 . T . . END=10026464 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:96:39:0,96,1440 +20 10026465 . C . . END=10026505 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:38:99:34:0,99,1053 +20 10026506 . C . . END=10026507 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:42:91:41:0,91,1173 +20 10026508 . C . . END=10026524 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:99:39:0,107,1246 +20 10026525 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:93:40:0,93,1190 +20 10026526 . C . . END=10026541 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:40:99:38:0,101,1176 +20 10026542 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:90:41:0,90,1244 +20 10026543 . G . . END=10026575 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:99:36:0,100,1149 +20 10026576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:38:97:38:0,97,1162 +20 10026577 . T . . END=10026599 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:39:99:37:0,101,1178 +20 10026600 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:41:91:41:0,91,1257 +20 10026601 . C . . END=10026696 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:45:99:39:0,104,1295 +20 10026697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:48:97:48:0,97,1363 +20 10026698 . C . . END=10026756 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:52:99:47:0,112,1425 +20 10026757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:54:98:54:0,98,1593 +20 10026758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:54:86:54:0,86,1535 +20 10026759 . C . . END=10026793 GT:DP:GQ:MIN_DP:PL ./.:72:99:41:0,102,1530 ./.:55:99:52:0,120,1800 +20 10026794 . C T, . . BaseQRankSum=2.83;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=378841,106;ReadPosRankSum=-7.000e-02 GT:AD:DP:GQ:PL:SB ./.:19,33,0:52:99:1113,0,529,1170,627,1798:7,12,15,18 ./.:27,24,0:51:99:601,0,657,682,729,1411:15,12,11,13 +20 10026795 . G . . END=10027060 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:53:99:38:0,102,1116 +20 10027061 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:42:82:42:0,82,1170 +20 10027062 . T . . END=10027073 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:42:99:39:0,106,1243 +20 10027074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:44:97:44:0,97,1323 +20 10027075 . G . . END=10027080 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:47:99:47:0,120,1800 +20 10027081 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:46:91:46:0,91,1290 +20 10027082 . A . . END=10027193 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:43:99:40:0,101,1160 +20 10027194 . T . . END=10027201 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:46:90:45:0,90,1350 +20 10027202 . A . . END=10027203 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:48:87:48:0,87,1305 +20 10027204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:47:75:47:0,75,1125 +20 10027205 . T . . END=10027206 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:46:60:45:0,60,900 +20 10027207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:44:57:44:0,57,855 +20 10027208 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:44:54:44:0,54,810 +20 10027209 . T . . END=10027210 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:45:45:44:0,45,675 +20 10027211 . A . . END=10027212 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:45:42:44:0,42,630 +20 10027213 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:45:33:45:0,33,495 +20 10027214 . G . . END=10027216 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:44:30:42:0,30,450 +20 10027217 . T . . END=10027219 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:44:27:44:0,27,405 +20 10027220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:43:24:43:0,24,360 +20 10027221 . T . . END=10027222 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:43:18:43:0,18,270 +20 10027223 . A . . END=10027225 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:41:15:41:0,15,225 +20 10027226 . A . . END=10027227 GT:DP:GQ:MIN_DP:PL ./.:71:99:52:0,105,1575 ./.:43:18:43:0,18,270 +20 10027228 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:96:66:0,96,1440 ./.:44:15:43:0,15,225 +20 10027229 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:67:0,99,1485 ./.:44:15:43:0,15,225 +20 10027230 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:96:66:0,96,1440 ./.:45:9:44:0,9,135 +20 10027231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:68:0,102,1530 ./.:45:9:44:0,9,135 +20 10027232 . A . . END=10027233 GT:DP:GQ:MIN_DP:PL ./.:70:99:68:0,102,1530 ./.:46:12:45:0,12,180 +20 10027234 . A ATTAG, . . BaseQRankSum=-4.060e-01;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.375;RAW_MQandDP=388151,113;ReadPosRankSum=0.211 GT:AD:DP:GQ:PL:SB ./.:34,35,0:69:99:1358,0,1964,1461,2069,3531:18,16,15,20 ./.:1,40,0:41:65:1767,65,0,1770,126,1832:0,1,19,21 +20 10027235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:0:72:0,0,334 ./.:45:0:45:0,0,0 +20 10027236 . T . . END=10027304 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:99:41:0,114,1710 +20 10027305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:47:97:47:0,97,1267 +20 10027306 . C . . END=10027327 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:44:99:40:0,108,1208 +20 10027328 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:94:41:0,94,1286 +20 10027329 . T . . END=10027355 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:42:99:39:0,101,1207 +20 10027356 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:86:45:0,86,1212 +20 10027357 . T . . END=10027512 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:45:99:39:0,100,1167 +20 10027513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:90:41:0,90,1256 +20 10027514 . C . . END=10027517 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:40:99:39:0,100,1146 +20 10027518 . C . . END=10027519 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:91:41:0,91,1178 +20 10027520 . T . . END=10027551 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:99:38:0,105,1159 +20 10027552 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:38:95:38:0,95,1089 +20 10027553 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:37:99:37:0,111,1163 +20 10027554 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:37:86:37:0,86,1078 +20 10027555 . C . . END=10027801 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:49:99:36:0,100,1146 +20 10027802 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:41:88:41:0,88,1215 +20 10027803 . T . . END=10027867 GT:DP:GQ:MIN_DP:PL ./.:78:99:56:0,120,1800 ./.:50:99:42:0,115,1296 +20 10027868 . A G, . . BaseQRankSum=-4.141e+00;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.032;RAW_MQandDP=476882,134;ReadPosRankSum=1.23 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:44,45,0:89:99:0|1:10027868_A_G:1768,0,3201,1901,3340,5240:19,25,26,19 ./.:19,24,0:43:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:10,9,14,10 +20 10027869 . A . . END=10027871 GT:DP:GQ:MIN_DP:PL ./.:86:99:85:0,120,1800 ./.:48:99:46:0,120,1800 +20 10027872 . A G, . . BaseQRankSum=-8.550e-01;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.101;RAW_MQandDP=458882,129;ReadPosRankSum=0.173 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,45,0:85:99:0|1:10027868_A_G:1753,0,3136,1879,3272,5151:16,24,26,19 ./.:18,24,0:42:99:0|1:10027868_A_G:927,0,1091,984,1164,2148:9,9,14,10 +20 10027873 . G . . END=10027989 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:41:0,105,1244 +20 10027990 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:75:42:0,75,1081 +20 10027991 . G . . END=10028073 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:38:0,103,1137 +20 10028074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:91:42:0,91,1216 +20 10028075 . G . . END=10028079 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:40:0,99,1485 +20 10028080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:96:39:0,96,1440 +20 10028081 . A . . END=10028082 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:40:0,99,1485 +20 10028083 . A . . END=10028087 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:93:36:0,93,1395 +20 10028088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,99,1485 +20 10028089 . A . . END=10028096 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:93:33:0,93,1395 +20 10028097 . C . . END=10028102 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:35:0,99,1485 +20 10028103 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:96:36:0,96,1440 +20 10028104 . A . . END=10028111 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10028112 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:34:87:34:0,87,1062 +20 10028113 . T . . END=10028116 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:35:0,105,1108 +20 10028117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:82:36:0,82,1102 +20 10028118 . T . . END=10028121 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:36:0,105,1156 +20 10028122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:97:36:0,97,1074 +20 10028123 . A . . END=10028126 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10028127 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10028128 . C . . END=10028146 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:99:33:0,99,1013 +20 10028147 . T . . END=10028155 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:90:34:0,90,1350 +20 10028156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10028157 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:93:36:0,93,1395 +20 10028158 . T . . END=10028180 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:99:36:0,99,1152 +20 10028181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:43:95:43:0,95,1209 +20 10028182 . A . . END=10028301 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:40:0,105,1274 +20 10028302 . G T, . . BaseQRankSum=1.50;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=0.800 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:80:99:55:.:.:0,120,1800,120,1800,1800 ./.:30,18,0:48:99:.:0|1:10028302_G_T:634,0,1476,724,1533,2257:14,16,14,4 +20 10028303 . T . . END=10028315 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:99:42:0,114,1334 +20 10028316 . C T, . . BaseQRankSum=0.911;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=-7.190e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:80:99:55:.:.:0,120,1800,120,1800,1800 ./.:25,17,0:42:99:.:0|1:10028302_G_T:621,0,1379,699,1433,2132:12,13,12,5 +20 10028317 . T . . END=10028346 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:99:38:0,108,1238 +20 10028347 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:98:38:0,98,1149 +20 10028348 . C . . END=10028351 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:36:0,102,1166 +20 10028352 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:98:37:0,98,1166 +20 10028353 . G . . END=10028370 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:99:36:0,102,1530 +20 10028371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:83:39:0,83,1138 +20 10028372 . T . . END=10028400 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:41:99:38:0,101,1234 +20 10028401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:36:90:36:0,90,1052 +20 10028402 . C . . END=10028723 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:99:35:0,99,1112 +20 10028724 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:97:38:0,97,1170 +20 10028725 . A G, . . BaseQRankSum=-2.165e+00;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.184 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:55:0,120,1800,120,1800,1800 ./.:17,19,0:36:99:.:467,0,436,518,493,1011:8,9,8,11 +20 10028726 . T . . END=10028727 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:37:0,99,1485 +20 10028728 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:96:37:0,96,1440 +20 10028729 . A . . END=10028738 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:33:0,99,1002 +20 10028739 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:77:35:0,77,1058 +20 10028740 . T . . END=10028756 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:36:0,99,1485 +20 10028757 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:94:37:0,94,1057 +20 10028758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:37:99:37:0,108,1620 +20 10028759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:35:88:35:0,88,1026 +20 10028760 . T . . END=10028779 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:38:99:37:0,101,1079 +20 10028780 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:40:78:40:0,78,1111 +20 10028781 . A . . END=10028847 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:99:40:0,99,1209 +20 10028848 . T . . END=10028849 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:45:93:45:0,93,1395 +20 10028850 . T . . END=10028852 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:43:81:41:0,81,1215 +20 10028853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:44:78:44:0,78,1170 +20 10028854 . C . . END=10028865 GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:42:63:39:0,63,945 +20 10028866 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:55:0,120,1800 ./.:39:32:39:0,32,952 +20 10028867 . A ATG, . . BaseQRankSum=-6.100e-02;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=2.71;RAW_MQandDP=471041,128;ReadPosRankSum=0.075 GT:AD:DP:GQ:PL:SB ./.:32,39,0:71:99:1144,0,916,1242,1033,2275:11,21,18,21 ./.:13,19,0:32:99:584,0,361,623,421,1045:6,7,9,10 +20 10028868 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:0:92:0,0,401 ./.:40:0:40:0,0,31 +20 10028869 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:95:41:0,95,1143 +20 10028870 . T . . END=10028871 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:80:41:0,80,1120 +20 10028872 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:42:70:42:0,70,1196 +20 10028873 . G . . END=10028897 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:37:0,99,1282 +20 10028898 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:95:38:0,95,1219 +20 10028899 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:81:38:0,81,1126 +20 10028900 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:99:38:0,102,1530 +20 10028901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:86:38:0,86,1128 +20 10028902 . T . . END=10028906 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:37:0,102,1530 +20 10028907 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:37:0,90,1087 +20 10028908 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,99,1167 +20 10028909 . A . . END=10028910 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:93:37:0,93,1075 +20 10028911 . T . . END=10028964 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:37:0,100,1119 +20 10028965 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:98:37:0,98,1084 +20 10028966 . T . . END=10028970 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,105,1575 +20 10028971 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1071 +20 10028972 . A . . END=10028983 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:36:0,99,1485 +20 10028984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:79:37:0,79,1131 +20 10028985 . G . . END=10028989 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:37:0,105,1575 +20 10028990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:98:39:0,98,1204 +20 10028991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:39:0,114,1710 +20 10028992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:97:39:0,97,1160 +20 10028993 . A . . END=10029056 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:36:0,99,1151 +20 10029057 . A . . END=10029064 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:34:0,90,1121 +20 10029065 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:89:35:0,89,1070 +20 10029066 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029067 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:79:35:0,79,1018 +20 10029068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:72:34:0,72,981 +20 10029070 . T . . END=10029071 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:86:33:0,86,1056 +20 10029072 . A . . END=10029074 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:33:0,90,1350 +20 10029075 . C . . END=10029076 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:80:34:0,80,990 +20 10029077 . C . . END=10029078 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:36:0,90,1350 +20 10029079 . T . . END=10029088 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:99:36:0,102,1108 +20 10029089 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:39:96:39:0,96,1229 +20 10029090 . A . . END=10029103 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:44:99:39:0,108,1373 +20 10029104 . G A, . . DP=103;ExcessHet=3.01;RAW_MQandDP=154800,43 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:60:0,120,1800,120,1800,1800 ./.:0,43,0:43:99:.:1347,128,0,1347,128,1347:0,0,21,22 +20 10029105 . T . . END=10029341 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:48:99:42:0,113,1270 +20 10029342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:43:96:43:0,96,1194 +20 10029343 . T . . END=10029376 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:45:99:42:0,99,1221 +20 10029377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:79:41:0,79,1184 +20 10029378 . A . . END=10029385 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:99:39:0,111,1665 +20 10029386 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:70:40:0,70,1172 +20 10029387 . A . . END=10029645 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:49:99:36:0,101,1238 +20 10029646 . G . . END=10029662 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:92:33:0,92,1120 +20 10029663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:69:34:0,69,1031 +20 10029664 . G . . END=10029665 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:90:33:0,90,1350 +20 10029666 . A . . END=10029673 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:87:31:0,87,1305 +20 10029674 . T . . END=10029678 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:32:0,90,1049 +20 10029679 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,982 +20 10029680 . C . . END=10029681 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:87:32:0,87,1305 +20 10029682 . G . . END=10029692 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:90:32:0,90,1350 +20 10029693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:77:31:0,77,980 +20 10029694 . A . . END=10029695 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:90:31:0,90,1350 +20 10029696 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:50:32:0,50,959 +20 10029697 . T . . END=10029698 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10029699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:73:33:0,73,1033 +20 10029700 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:33:0,84,1053 +20 10029701 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:90:33:0,90,1350 +20 10029702 . G . . END=10029714 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:84:29:0,84,1260 +20 10029715 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:76:29:0,76,904 +20 10029716 . T . . END=10029717 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:81:29:0,81,1215 +20 10029718 . C . . END=10029719 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:30:76:29:0,76,895 +20 10029720 . T . . END=10029729 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:30:0,90,971 +20 10029730 . A . . END=10029731 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:81:32:0,81,976 +20 10029732 . G . . END=10029734 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:96:33:0,96,1440 +20 10029735 . C . . END=10029741 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:33:0,84,1260 +20 10029742 . C . . END=10029746 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:90:31:0,90,1350 +20 10029747 . G . . END=10029765 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:33:0,99,1011 +20 10029766 . T . . END=10029769 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:96:36:0,96,1440 +20 10029770 . A . . END=10029772 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,99,1485 +20 10029773 . A . . END=10029775 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:35:0,93,1395 +20 10029776 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:87:35:0,87,1039 +20 10029777 . C . . END=10029778 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:96:34:0,96,1107 +20 10029779 . A . . END=10029783 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:35:0,99,1485 +20 10029784 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:78:36:0,78,1028 +20 10029785 . A . . END=10029789 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10029790 . T . . END=10029791 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:34:0,90,1073 +20 10029792 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:85:34:0,85,959 +20 10029793 . T . . END=10029797 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:92:34:0,92,1040 +20 10029798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:76:37:0,76,1067 +20 10029799 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:92:36:0,92,1089 +20 10029800 . A . . END=10029810 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,99,1485 +20 10029811 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:84:37:0,84,1058 +20 10029812 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,111,1172 +20 10029813 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:96:36:0,96,1080 +20 10029814 . A . . END=10029815 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:35:0,105,949 +20 10029816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:79:35:0,79,916 +20 10029817 . T . . END=10029828 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:36:0,102,1069 +20 10029829 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:96:40:0,96,1227 +20 10029830 . A . . END=10029835 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:36:0,105,1062 +20 10029836 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:83:38:0,83,1083 +20 10029837 . A . . END=10029847 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:99:37:0,100,1122 +20 10029848 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:41:89:41:0,89,1125 +20 10029849 . A . . END=10029850 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:40:96:38:0,96,1077 +20 10029851 . A . . END=10030033 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:46:99:35:0,99,1185 +20 10030034 . T . . END=10030036 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10030037 . G . . END=10030044 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:34:0,99,1485 +20 10030045 . C . . END=10030046 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10030047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:87:34:0,87,1305 +20 10030048 . G . . END=10030049 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:90:36:0,90,1350 +20 10030050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:87:37:0,87,1305 +20 10030051 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:90:38:0,90,1350 +20 10030052 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:87:37:0,87,1305 +20 10030053 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:90:38:0,90,1350 +20 10030054 . G . . END=10030058 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:84:34:0,84,1013 +20 10030059 . A . . END=10030061 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:72:31:0,72,1080 +20 10030062 . T . . END=10030069 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:69:28:0,69,1035 +20 10030070 . A . . END=10030093 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:27:70:25:0,70,716 +20 10030094 . G . . END=10030095 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:27:65:27:0,65,800 +20 10030096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:81:28:0,81,1215 +20 10030097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:67:28:0,67,838 +20 10030098 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:84:28:0,84,890 +20 10030099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:28:69:28:0,69,806 +20 10030100 . G . . END=10030104 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:29:84:28:0,84,799 +20 10030105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,916 +20 10030106 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:93:32:0,93,1395 +20 10030107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:80:32:0,80,971 +20 10030108 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:56:32:0,56,911 +20 10030109 . G . . END=10030114 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:90:32:0,90,1350 +20 10030115 . A . . END=10030116 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:33:0,99,1078 +20 10030117 . C . . END=10030127 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:90:32:0,90,1064 +20 10030128 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:79:32:0,79,863 +20 10030129 . C . . END=10030139 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:84:31:0,84,1260 +20 10030140 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:78:32:0,78,939 +20 10030141 . A . . END=10030142 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:60:32:0,60,907 +20 10030143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:32:84:32:0,84,977 +20 10030144 . C . . END=10030145 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:30:71:30:0,71,845 +20 10030146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:31:65:31:0,65,939 +20 10030147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:53:33:0,53,926 +20 10030148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10030149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:33:64:33:0,64,971 +20 10030150 . T . . END=10030151 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:72:34:0,72,1016 +20 10030152 . A . . END=10030153 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10030154 . C . . END=10030155 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:90:35:0,90,1069 +20 10030156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:36:0,105,1575 +20 10030157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:34:85:34:0,85,1041 +20 10030158 . C . . END=10030159 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:34:0,102,1073 +20 10030160 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1111 +20 10030161 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10030162 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:89:36:0,89,1120 +20 10030163 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1097 +20 10030164 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:99:36:0,105,1575 +20 10030165 . A . . END=10030166 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:95:37:0,95,1154 +20 10030167 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:84:38:0,84,1139 +20 10030168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:99:38:0,103,1176 +20 10030169 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:38:84:38:0,84,1185 +20 10030170 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:76:36:0,76,1074 +20 10030171 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:81:37:0,81,1102 +20 10030172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,105,1575 +20 10030173 . A . . END=10030174 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:83:37:0,83,1153 +20 10030175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:91:36:0,91,1135 +20 10030176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1094 +20 10030177 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1076 +20 10030178 . C . . END=10030180 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:77:36:0,77,1047 +20 10030181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:80:37:0,80,1108 +20 10030182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:99:37:0,102,1530 +20 10030183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:78:36:0,78,1000 +20 10030184 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:97:36:0,97,1062 +20 10030185 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:85:37:0,85,1094 +20 10030186 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:37:92:37:0,92,1125 +20 10030187 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:36:80:36:0,80,1025 +20 10030188 . T A, . . BaseQRankSum=1.36;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=404041,113;ReadPosRankSum=0.917 GT:AD:DP:GQ:PL:SB ./.:42,39,0:81:99:1401,0,1524,1527,1641,3168:24,18,15,24 ./.:16,15,0:31:99:414,0,398,461,443,905:9,7,10,5 +20 10030189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:77:36:0,77,1082 +20 10030190 . T . . END=10030192 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:93:36:0,93,1395 +20 10030193 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:79:35:0,79,1082 +20 10030194 . C . . END=10030197 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:90:32:0,90,1350 +20 10030198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:85:33:0,85,936 +20 10030199 . A . . END=10030205 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:30:0,90,946 +20 10030206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:81:31:0,81,985 +20 10030207 . C . . END=10030216 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:90:31:0,90,942 +20 10030217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:83:34:0,83,907 +20 10030218 . T . . END=10030225 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:90:31:0,90,1350 +20 10030226 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:83:33:0,83,999 +20 10030227 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:74:32:0,74,996 +20 10030228 . G . . END=10030230 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:93:32:0,93,1395 +20 10030231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:70:32:0,70,939 +20 10030232 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:83:32:0,83,939 +20 10030233 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:72:31:0,72,933 +20 10030234 . C . . END=10030237 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:85:31:0,85,1014 +20 10030238 . C . . END=10030239 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:90:32:0,90,1350 +20 10030240 . G . . END=10030255 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:81:29:0,81,1215 +20 10030256 . T . . END=10030272 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:29:75:26:0,75,803 +20 10030273 . A . . END=10030275 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:26:69:26:0,69,1035 +20 10030276 . C . . END=10030282 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:27:72:26:0,72,821 +20 10030283 . A . . END=10030285 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:28:81:28:0,81,1215 +20 10030286 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:29:76:29:0,76,868 +20 10030287 . A . . END=10030289 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:81:28:0,81,1215 +20 10030290 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:68:30:0,68,839 +20 10030291 . C . . END=10030302 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:81:30:0,81,1215 +20 10030303 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,1350 +20 10030304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:30:61:30:0,61,852 +20 10030305 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:82:32:0,82,923 +20 10030306 . G . . END=10030308 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,923 +20 10030309 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:77:31:0,77,873 +20 10030310 . G . . END=10030316 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:30:0,90,952 +20 10030317 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:66:32:0,66,924 +20 10030318 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:75:31:0,75,883 +20 10030319 . G . . END=10030320 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:90:31:0,90,1350 +20 10030321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:31:87:31:0,87,1305 +20 10030322 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:90:32:0,90,1350 +20 10030323 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:32:85:32:0,85,948 +20 10030324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:69:33:0,69,963 +20 10030325 . G . . END=10030329 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:33:93:33:0,93,1395 +20 10030330 . C . . END=10030335 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:99:33:0,99,1016 +20 10030336 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:94:35:0,94,1045 +20 10030337 . C . . END=10030349 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:36:99:34:0,99,1027 +20 10030350 . T . . END=10030352 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:34:96:33:0,96,1440 +20 10030353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:35:73:35:0,73,980 +20 10030354 . T . . END=10030372 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:99:34:0,99,1112 +20 10030373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:92:42:0,92,1109 +20 10030374 . G . . END=10030446 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:44:99:40:0,105,1175 +20 10030447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:97:42:0,97,1094 +20 10030448 . T . . END=10030451 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:42:99:41:0,115,1265 +20 10030452 . G A, . . BaseQRankSum=-1.085e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=-4.040e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:41:0,103,1575,103,1575,1575 ./.:12,28,0:40:99:.:768,0,241,804,325,1129:8,4,15,13 +20 10030453 . A . . END=10030477 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:44:99:40:0,102,1208 +20 10030478 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:41:90:41:0,90,1197 +20 10030479 . G . . END=10030505 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:43:99:39:0,100,1192 +20 10030506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:39:97:39:0,97,1157 +20 10030507 . C . . END=10030510 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:38:99:37:0,105,1190 +20 10030511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:93:37:0,93,1101 +20 10030512 . C . . END=10030530 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:37:99:36:0,102,1138 +20 10030531 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:38:98:38:0,98,1111 +20 10030532 . C . . END=10030566 GT:DP:GQ:MIN_DP:PL ./.:71:99:41:0,103,1575 ./.:48:99:35:0,100,1034 +20 10030567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1511 ./.:48:99:35:0,100,1034 +20 10030568 . C . . END=10030806 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:48:99:35:0,100,1034 +20 10030807 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:42:95:42:0,95,1192 +20 10030808 . A . . END=10030810 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:42:99:40:0,100,1109 +20 10030811 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:42:77:42:0,77,1172 +20 10030812 . C . . END=10030821 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:41:99:39:0,102,1136 +20 10030822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:41:93:41:0,93,1272 +20 10030823 . G . . END=10030830 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:39:99:37:0,102,1530 +20 10030831 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:90:38:0,90,1130 +20 10030832 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:99:37:0,102,1530 +20 10030833 . A . . END=10030835 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:93:38:0,93,1110 +20 10030836 . T . . END=10030837 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:40:99:39:0,99,1485 +20 10030838 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:39:96:39:0,96,1440 +20 10030839 . T . . END=10030845 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:99:37:0,99,1211 +20 10030846 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10030847 . C . . END=10030856 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:99:35:0,99,1153 +20 10030857 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:91:36:0,91,1079 +20 10030858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:88:37:0,88,1142 +20 10030859 . G . . END=10030930 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:50:99:36:0,107,1094 +20 10030931 . C A, . . BaseQRankSum=3.73;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=-2.630e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,99,1485,99,1485,1485 ./.:31,22,0:53:99:.:571,0,659,662,725,1387:13,18,5,17 +20 10030932 . G . . END=10031065 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:55:99:37:0,99,1132 +20 10031066 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:89:35:0,89,978 +20 10031067 . T . . END=10031069 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:99:37:0,99,1176 +20 10031070 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:39:92:39:0,92,1148 +20 10031071 . T . . END=10031078 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:39:99:38:0,99,1485 +20 10031079 . G . . END=10031080 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:92:37:0,92,1127 +20 10031081 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:48:36:0,48,972 +20 10031082 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:93:36:0,93,1395 +20 10031083 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:99:38:0,99,1485 +20 10031084 . T . . END=10031087 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:96:37:0,96,1440 +20 10031088 . A . . END=10031089 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:99:37:0,99,1485 +20 10031090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:87:36:0,87,1125 +20 10031091 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:99:36:0,99,1485 +20 10031092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:78:35:0,78,1081 +20 10031093 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:34:93:34:0,93,1395 +20 10031094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:99:36:0,99,1485 +20 10031095 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:96:36:0,96,1150 +20 10031096 . A . . END=10031098 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10031099 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:94:35:0,94,1081 +20 10031100 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:89:35:0,89,1049 +20 10031101 . T . . END=10031103 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:99:34:0,99,1485 +20 10031104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:32:60:32:0,60,869 +20 10031105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:33:96:33:0,96,1440 +20 10031106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:33:84:33:0,84,1023 +20 10031107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:33:96:33:0,96,1440 +20 10031108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:34:99:34:0,99,1485 +20 10031109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:34:70:34:0,70,1079 +20 10031110 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10031111 . A . . END=10031113 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:99:35:0,99,1485 +20 10031114 . T . . END=10031115 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:93:35:0,93,1395 +20 10031116 . T . . END=10031118 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:99:37:0,99,1485 +20 10031119 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:79:38:0,79,1132 +20 10031120 . T . . END=10031130 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:99:38:0,102,1166 +20 10031131 . G . . END=10031136 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:37:96:34:0,96,1440 +20 10031137 . T . . END=10031139 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:36:99:35:0,99,1485 +20 10031140 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:34:96:34:0,96,1440 +20 10031141 . G . . END=10031145 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:34:99:33:0,99,1015 +20 10031146 . A . . END=10031147 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:90:34:0,90,1001 +20 10031148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:99:35:0,102,1530 +20 10031149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:35:94:35:0,94,1074 +20 10031150 . G . . END=10031164 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:38:99:34:0,99,1037 +20 10031165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:39:82:39:0,82,1110 +20 10031166 . A . . END=10031167 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:40:99:39:0,100,1169 +20 10031168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:43:96:43:0,96,1323 +20 10031169 . T . . END=10031174 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:44:99:43:0,102,1349 +20 10031175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:46:92:46:0,92,1319 +20 10031176 . T . . END=10031225 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:47:99:42:0,99,1288 +20 10031226 . T . . END=10031234 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:49:90:46:0,90,1350 +20 10031235 . T . . END=10031239 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:48:84:47:0,84,1260 +20 10031240 . G . . END=10031253 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,99,1485 ./.:47:75:43:0,75,1125 +20 10031254 . A AT, . . BaseQRankSum=0.497;ClippingRankSum=0.00;DP=132;ExcessHet=3.01;MQRankSum=0.017;RAW_MQandDP=472810,132;ReadPosRankSum=0.478 GT:AD:DP:GQ:PL:SB ./.:38,47,0:85:99:1501,0,1159,1616,1300,2916:27,11,25,22 ./.:23,19,0:42:99:583,0,725,653,782,1435:12,11,8,11 +20 10031255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:88:0:88:0,0,0 ./.:48:0:48:0,0,216 +20 10031256 . G . . END=10031341 GT:DP:GQ:MIN_DP:PL ./.:96:99:87:0,120,1800 ./.:48:99:45:0,105,1321 +20 10031342 . G A, . . BaseQRankSum=3.43;ClippingRankSum=0.00;DP=138;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=494041,138;ReadPosRankSum=0.857 GT:AD:DP:GQ:PL:SB ./.:41,52,0:93:99:1863,0,1375,1986,1531,3517:22,19,31,21 ./.:22,23,0:45:99:620,0,534,685,603,1288:12,10,10,13 +20 10031343 . A . . END=10031432 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:45:99:37:0,100,1121 +20 10031433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:82:38:0,82,1143 +20 10031434 . T . . END=10031451 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:99:35:0,99,1089 +20 10031452 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:88:36:0,88,1094 +20 10031453 . G . . END=10031457 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:99:36:0,108,1090 +20 10031458 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:97:36:0,97,1097 +20 10031459 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:35:99:35:0,104,1042 +20 10031460 . T . . END=10031462 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:36:93:35:0,93,1395 +20 10031463 . A . . END=10031498 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:36:0,99,1103 +20 10031499 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:41:77:41:0,77,1157 +20 10031500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:40:0,102,1530 +20 10031501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:79:39:0,79,1111 +20 10031502 . C . . END=10031506 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:99:36:0,99,1485 +20 10031507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:96:38:0,96,1049 +20 10031508 . T . . END=10031510 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:99:36:0,105,1575 +20 10031511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:97:37:0,97,1148 +20 10031512 . A . . END=10031521 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:38:0,101,1126 +20 10031522 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:96:38:0,96,1122 +20 10031523 . C . . END=10031764 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:46:99:38:0,101,1152 +20 10031765 . G . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:38:98:38:0,98,1100 +20 10031766 . T . . END=10031769 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:39:99:38:0,105,1575 +20 10031770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:94:40:0,94,1184 +20 10031771 . A . . END=10031772 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:39:0,108,1213 +20 10031773 . A . . . GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:94:40:0,94,1227 +20 10031774 . T . . END=10031794 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:40:99:39:0,99,1153 +20 10031795 . G . . END=10031797 GT:DP:GQ:MIN_DP:PL ./.:91:99:66:0,120,1800 ./.:37:93:37:0,93,1395 +20 10031798 . G A, . . DP=138;ExcessHet=3.01;RAW_MQandDP=491810,138 GT:AD:DP:GQ:PL:SB ./.:0,104,0:104:99:4325,313,0,4325,313,4325:0,0,57,47 ./.:0,34,0:34:99:1056,102,0,1056,102,1056:0,0,15,19 +20 10031799 . T . . END=10031813 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:35:90:33:0,90,1056 +20 10031814 . A . . END=10031818 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:33:87:33:0,87,1305 +20 10031819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:31:90:31:0,90,1350 +20 10031820 . T . . END=10031822 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:34:87:32:0,87,1305 +20 10031823 . T . . END=10031825 GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:32:93:32:0,93,1395 +20 10031826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:105:99:101:0,120,1800 ./.:32:85:32:0,85,980 +20 10031827 . C T, . . BaseQRankSum=3.55;ClippingRankSum=0.00;DP=140;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=501769,140;ReadPosRankSum=-3.900e-01 GT:AD:DP:GQ:PL:SB ./.:52,56,0:108:99:2033,0,1798,2189,1966,4155:32,20,29,27 ./.:18,13,0:31:99:317,0,456,371,495,866:8,10,4,9 +20 10031828 . T . . END=10031832 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:35:90:33:0,90,1350 +20 10031833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:37:0,99,1485 +20 10031834 . G . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10031835 . T . . END=10031842 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:99:35:0,99,1485 +20 10031843 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:35:94:35:0,94,1081 +20 10031844 . G . . END=10031913 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:34:0,99,1079 +20 10031914 . A . . END=10031915 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10031916 . T . . END=10031953 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:34:0,99,1057 +20 10031954 . A . . END=10031960 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:90:34:0,90,1037 +20 10031961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:79:37:0,79,1088 +20 10031962 . A . . END=10031969 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:93:36:0,93,1395 +20 10031970 . A . . END=10031989 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:99:36:0,99,1132 +20 10031990 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:95:37:0,95,1146 +20 10031991 . G . . END=10032010 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:37:0,102,1180 +20 10032011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:76:40:0,76,1104 +20 10032012 . A . . END=10032093 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:45:99:38:0,101,1140 +20 10032094 . G A, . . BaseQRankSum=5.49;ClippingRankSum=0.00;DP=133;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=478800,133;ReadPosRankSum=0.092 GT:AD:DP:GQ:PL:SB ./.:47,36,0:83:99:1249,0,1497,1390,1605,2995:14,33,16,20 ./.:21,27,0:48:99:677,0,458,740,539,1279:12,9,17,10 +20 10032095 . T . . END=10032168 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:47:99:41:0,102,1220 +20 10032169 . C . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:41:92:41:0,92,1152 +20 10032170 . A . . END=10032186 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:43:99:42:0,110,1209 +20 10032187 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:42:94:42:0,94,1252 +20 10032188 . A . . END=10032199 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:41:99:40:0,100,1156 +20 10032200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:95:39:0,95,1190 +20 10032201 . G . . END=10032205 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:40:99:39:0,99,1156 +20 10032206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:82:39:0,82,1115 +20 10032207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:99:39:0,105,1575 +20 10032208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:90:39:0,90,1205 +20 10032209 . T . . END=10032221 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:99:39:0,101,1150 +20 10032222 . T . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:37:87:37:0,87,1065 +20 10032223 . A . . END=10032232 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:36:99:35:0,102,1029 +20 10032233 . G . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:38:98:38:0,98,1078 +20 10032234 . A . . END=10032243 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:40:99:38:0,105,1150 +20 10032244 . T . . . GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:39:91:39:0,91,1186 +20 10032245 . T . . END=10032412 GT:DP:GQ:MIN_DP:PL ./.:84:99:64:0,120,1800 ./.:50:99:40:0,104,1180 +20 10032413 . T G, . . BaseQRankSum=-2.742e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=413138,116;ReadPosRankSum=-1.110e-01 GT:AD:DP:GQ:PL:SB ./.:35,31,0:66:99:898,0,1277,1003,1371,2374:15,20,20,11 ./.:23,26,0:49:99:565,0,554,634,631,1265:14,9,17,9 +20 10032414 . T . . END=10032599 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:54:99:42:0,120,1800 +20 10032600 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:45:97:45:0,97,1324 +20 10032601 . C . . END=10032646 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:47:99:44:0,104,1291 +20 10032647 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:46:82:46:0,82,1238 +20 10032648 . G . . END=10032824 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:48:99:35:0,99,1056 +20 10032825 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:95:38:0,95,1066 +20 10032826 . A . . END=10032829 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:40:99:39:0,104,1203 +20 10032830 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:40:72:40:0,72,1097 +20 10032831 . T . . END=10032881 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:43:99:39:0,99,1172 +20 10032882 . A T, . . BaseQRankSum=-1.280e-01;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=425641,119;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL:SB ./.:39,36,0:75:99:1231,0,1406,1348,1514,2862:28,11,22,14 ./.:1,41,0:42:93:1306,93,0,1309,123,1340:1,0,21,20 +20 10032883 . A . . END=10032923 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:49:99:44:0,102,1380 +20 10032924 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:48:93:48:0,93,1395 +20 10032925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:48:84:48:0,84,1260 +20 10032926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:48:75:48:0,75,1125 +20 10032927 . T . . END=10032940 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:46:60:44:0,60,900 +20 10032941 . T . . END=10032943 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:44:57:44:0,57,855 +20 10032944 . G . . END=10032945 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:44:54:44:0,54,810 +20 10032946 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:44:51:44:0,51,765 +20 10032947 . G . . END=10032948 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:48:45:0,48,720 +20 10032949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:45:45:0,45,675 +20 10032950 . T . . END=10032951 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:46:39:46:0,39,585 +20 10032952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:36:45:0,36,540 +20 10032953 . C . . END=10032954 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:46:30:45:0,30,450 +20 10032955 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:44:27:44:0,27,405 +20 10032956 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:21:45:0,21,315 +20 10032957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:18:45:0,18,270 +20 10032958 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:15:45:0,15,225 +20 10032959 . T . . END=10032961 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:12:45:0,12,180 +20 10032962 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:46:6:46:0,6,90 +20 10032963 . C . . END=10032966 GT:DP:GQ:MIN_DP:PL ./.:67:99:61:0,99,1485 ./.:45:0:44:0,0,0 +20 10032967 . T . . END=10032971 GT:DP:GQ:MIN_DP:PL ./.:68:90:67:0,90,1350 ./.:45:0:44:0,0,0 +20 10032972 . C CAT, . . BaseQRankSum=-3.540e-01;ClippingRankSum=0.00;DP=109;ExcessHet=3.01;MQRankSum=-1.017e+00;RAW_MQandDP=390941,109;ReadPosRankSum=-1.239e+00 GT:AD:DP:GQ:PL:SB ./.:33,30,0:63:99:1160,0,1477,1260,1568,2827:17,16,11,19 ./.:0,43,0:43:99:1944,132,0,1944,132,1944:0,0,21,22 +20 10032973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:0:65:0,0,104 ./.:43:0:43:0,0,0 +20 10032974 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:44:96:44:0,96,1179 +20 10032975 . A . . END=10033031 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:99:36:0,99,1093 +20 10033032 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:77:37:0,77,932 +20 10033033 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:80:38:0,80,995 +20 10033034 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:99:39:0,99,1485 +20 10033035 . T . . END=10033036 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:96:36:0,96,1440 +20 10033037 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:85:37:0,85,1018 +20 10033038 . T . . END=10033045 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:90:33:0,90,1350 +20 10033046 . C . . END=10033047 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:81:33:0,81,966 +20 10033048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10033049 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:33:86:33:0,86,952 +20 10033050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:32:93:32:0,93,1395 +20 10033051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:71:34:0,71,1032 +20 10033052 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10033053 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:99:35:0,99,1485 +20 10033054 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:92:36:0,92,1108 +20 10033055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:34:99:34:0,102,1073 +20 10033056 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:35:88:35:0,88,1053 +20 10033057 . A . . END=10033058 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10033059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:91:36:0,91,1047 +20 10033060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:36:80:36:0,80,1021 +20 10033061 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:70:38:0,70,1080 +20 10033062 . C . . END=10033063 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:37:92:36:0,92,1078 +20 10033064 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:81:38:0,81,1021 +20 10033065 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:99:38:0,108,1620 +20 10033066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:83:38:0,83,1098 +20 10033067 . T . . END=10033072 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:39:0,106,1162 +20 10033073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:93:40:0,93,1128 +20 10033074 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:40:0,104,1212 +20 10033075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:95:38:0,95,1091 +20 10033076 . C . . END=10033077 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:99:39:0,100,1154 +20 10033078 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:86:42:0,86,1178 +20 10033079 . T . . END=10033084 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:39:0,103,1167 +20 10033085 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:97:40:0,97,1170 +20 10033086 . A . . END=10033096 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:40:0,103,1170 +20 10033097 . A . . END=10033098 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:90:41:0,90,1225 +20 10033099 . A . . END=10033105 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:99:38:0,102,1160 +20 10033106 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:97:38:0,97,1158 +20 10033107 . C . . END=10033341 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:47:99:37:0,99,1147 +20 10033342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:47:93:47:0,93,1352 +20 10033343 . A . . END=10033473 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:54:99:45:0,120,1800 +20 10033474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:46:91:46:0,91,1294 +20 10033475 . G . . END=10033513 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:38:0,100,1071 +20 10033514 . T . . END=10033515 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:84:40:0,84,1175 +20 10033516 . A . . END=10033558 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:42:99:40:0,105,1172 +20 10033559 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:73:41:0,73,1177 +20 10033560 . T . . END=10033588 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:41:99:39:0,111,1187 +20 10033589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:39:88:39:0,88,1053 +20 10033590 . G . . END=10033621 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:44:99:39:0,107,1160 +20 10033622 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:38:80:38:0,80,1106 +20 10033623 . T . . END=10033636 GT:DP:GQ:MIN_DP:PL ./.:78:99:50:0,120,1800 ./.:40:99:36:0,108,1126 +20 10033637 . C . . . GT:DP:GQ:MIN_DP:PL ./.:58:97:58:0,97,2210 ./.:40:99:36:0,108,1126 +20 10033638 . C . . END=10033652 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:40:99:36:0,108,1126 +20 10033653 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:43:98:43:0,98,1292 +20 10033654 . A . . END=10033675 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:42:99:39:0,106,1224 +20 10033676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:41:77:41:0,77,1201 +20 10033677 . G . . END=10033854 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:49:99:39:0,99,1370 +20 10033855 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:48:93:48:0,93,1350 +20 10033856 . A . . END=10033905 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:47:99:44:0,101,1273 +20 10033906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:47:75:47:0,75,1252 +20 10033907 . A . . END=10034010 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:43:99:38:0,99,1178 +20 10034011 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:83:39:0,83,1179 +20 10034012 . A . . END=10034013 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:99:38:0,99,1485 +20 10034014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:96:38:0,96,1440 +20 10034015 . C . . END=10034021 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10034022 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:88:35:0,88,1040 +20 10034023 . G . . END=10034039 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:99:33:0,99,1040 +20 10034040 . G . . END=10034055 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:90:33:0,90,1350 +20 10034056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:87:35:0,87,1305 +20 10034057 . T . . END=10034069 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:32:0,90,1350 +20 10034070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:83:33:0,83,979 +20 10034071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034072 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,990 +20 10034073 . T . . END=10034074 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034075 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:84:33:0,84,977 +20 10034076 . A . . END=10034082 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:93:31:0,93,931 +20 10034083 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:82:31:0,82,926 +20 10034084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034085 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:79:32:0,79,941 +20 10034086 . T . . END=10034087 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:93:32:0,93,1395 +20 10034088 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,991 +20 10034089 . T . . END=10034091 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10034092 . A . . END=10034095 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:93:34:0,93,1395 +20 10034096 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:70:34:0,70,952 +20 10034097 . T . . END=10034102 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:90:34:0,90,1350 +20 10034103 . C . . END=10034108 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:87:31:0,87,1305 +20 10034109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:78:30:0,78,894 +20 10034110 . G . . END=10034112 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:84:29:0,84,1260 +20 10034113 . T . . END=10034114 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10034115 . A . . END=10034120 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:31:0,87,1003 +20 10034121 . A . . END=10034122 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034123 . T . . END=10034124 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034125 . A . . END=10034128 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,971 +20 10034129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:65:33:0,65,938 +20 10034130 . A . . END=10034131 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034132 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:87:34:0,87,1075 +20 10034133 . G . . END=10034135 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:99:33:0,99,1055 +20 10034136 . A . . END=10034138 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:96:33:0,96,1440 +20 10034139 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:71:33:0,71,943 +20 10034140 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:90:34:0,90,975 +20 10034141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10034142 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:83:35:0,83,1046 +20 10034143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034144 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:57:35:0,57,936 +20 10034145 . A . . END=10034152 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:36:0,105,1103 +20 10034153 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:92:36:0,92,1090 +20 10034154 . A . . END=10034158 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:36:0,99,1104 +20 10034159 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:94:35:0,94,1032 +20 10034160 . T . . END=10034171 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,100,1142 +20 10034172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:81:37:0,81,1073 +20 10034173 . A . . END=10034177 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,102,1530 +20 10034178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:86:37:0,86,1083 +20 10034179 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10034180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:94:37:0,94,1100 +20 10034181 . G . . END=10034182 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034184 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10034185 . A . . END=10034190 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10034191 . A . . END=10034195 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:34:87:33:0,87,1305 +20 10034196 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:66:35:0,66,933 +20 10034197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:90:35:0,90,1350 +20 10034198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:87:33:0,87,1305 +20 10034199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:75:33:0,75,925 +20 10034200 . A . . END=10034201 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:87:31:0,87,1305 +20 10034202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:76:31:0,76,920 +20 10034203 . G . . END=10034214 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:82:30:0,82,910 +20 10034215 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:30:76:30:0,76,872 +20 10034216 . T . . END=10034226 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:29:84:28:0,84,879 +20 10034227 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:59:31:0,59,873 +20 10034228 . C . . END=10034229 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:81:31:0,81,990 +20 10034230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034231 . G . . END=10034233 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:85:32:0,85,966 +20 10034234 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:90:33:0,90,1350 +20 10034235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:88:33:0,88,1027 +20 10034236 . A . . END=10034238 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034239 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:31:74:31:0,74,949 +20 10034240 . A . . END=10034244 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:32:93:32:0,93,1001 +20 10034245 . T . . END=10034251 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:99:33:0,99,1037 +20 10034252 . A . . END=10034256 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:36:93:36:0,93,1395 +20 10034257 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:74:38:0,74,1044 +20 10034258 . C . . END=10034272 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:35:0,99,1074 +20 10034273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:91:38:0,91,1114 +20 10034274 . T . . END=10034276 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,105,1147 +20 10034277 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:91:38:0,91,1079 +20 10034278 . C . . END=10034279 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:39:99:39:0,111,1665 +20 10034280 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:89:38:0,89,1134 +20 10034281 . T . . END=10034288 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:37:0,99,1133 +20 10034289 . A . . END=10034293 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:92:37:0,92,1112 +20 10034294 . A . . END=10034299 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:38:99:35:0,99,1090 +20 10034300 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:33:82:33:0,82,953 +20 10034301 . C . . END=10034303 GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:35:99:35:0,105,1071 +20 10034304 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:93:37:0,93,1077 +20 10034305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:53:0,120,1800 ./.:37:99:37:0,99,1090 +20 10034306 . T C, . . BaseQRankSum=-2.200e-01;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=1.15;RAW_MQandDP=383810,108;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL:SB ./.:46,29,0:75:99:811,0,1593,950,1680,2630:24,22,14,15 ./.:11,19,0:30:99:486,0,219,519,275,794:5,6,14,5 +20 10034307 . T . . END=10034309 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,103,1113 +20 10034310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:65:37:0,65,1032 +20 10034311 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1099 +20 10034312 . T . . END=10034341 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:36:0,100,1142 +20 10034342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:92:41:0,92,1233 +20 10034343 . T . . END=10034356 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:39:0,105,1201 +20 10034357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:86:39:0,86,1130 +20 10034358 . C . . END=10034399 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:35:0,99,1127 +20 10034400 . A . . END=10034413 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:90:34:0,90,1027 +20 10034414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:78:34:0,78,978 +20 10034415 . T . . END=10034416 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:87:32:0,87,1305 +20 10034417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034418 . T . . END=10034424 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:84:32:0,84,960 +20 10034425 . C T, . . BaseQRankSum=1.76;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=115200,32;ReadPosRankSum=-8.950e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:79:99:55:0,120,1800,120,1800,1800 ./.:10,22,0:32:99:.:560,0,175,590,241,830:3,7,12,10 +20 10034426 . G . . END=10034429 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10034430 . C . . END=10034435 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:30:0,90,906 +20 10034436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034437 . C . . END=10034438 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:76:31:0,76,920 +20 10034439 . C . . END=10034447 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:81:31:0,81,1215 +20 10034448 . C . . END=10034449 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10034450 . T . . END=10034453 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034454 . A . . END=10034458 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034459 . G . . END=10034486 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:36:0,99,1485 +20 10034487 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:94:37:0,94,1158 +20 10034488 . C . . END=10034506 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:35:0,105,1045 +20 10034507 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:90:39:0,90,1233 +20 10034508 . A . . END=10034542 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:36:0,100,1162 +20 10034543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:62:39:0,62,1108 +20 10034544 . A . . END=10034615 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:36:0,99,1157 +20 10034616 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:96:35:0,96,1440 +20 10034617 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:86:36:0,86,1106 +20 10034618 . A . . END=10034622 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:92:36:0,92,1124 +20 10034623 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10034624 . C . . END=10034627 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10034628 . A . . END=10034635 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1485 +20 10034636 . T . . END=10034645 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:93:34:0,93,1395 +20 10034646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10034647 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:88:35:0,88,1067 +20 10034648 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:79:35:0,79,1051 +20 10034649 . C . . END=10034667 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:34:0,99,1140 +20 10034668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:97:37:0,97,1117 +20 10034669 . A . . END=10034692 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,99,1485 +20 10034693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:95:39:0,95,1121 +20 10034694 . G . . END=10034710 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1032 +20 10034711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,994 +20 10034712 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:80:35:0,80,1063 +20 10034713 . T . . END=10034722 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1053 +20 10034723 . G . . END=10034724 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10034725 . A . . END=10034726 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10034727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:89:35:0,89,1045 +20 10034728 . T . . END=10034732 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:96:34:0,96,1064 +20 10034733 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:84:34:0,84,994 +20 10034734 . G . . END=10034737 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034738 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:29:87:29:0,87,810 +20 10034739 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:34:0,96,1440 +20 10034740 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:78:33:0,78,955 +20 10034741 . A . . END=10034742 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034743 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:88:36:0,88,1111 +20 10034744 . G . . END=10034760 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:33:0,99,1056 +20 10034761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:97:38:0,97,1110 +20 10034762 . C . . END=10034784 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:35:0,102,1117 +20 10034785 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:83:37:0,83,1091 +20 10034786 . A . . END=10034789 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1440 +20 10034790 . T . . END=10034791 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:38:0,99,1485 +20 10034792 . T . . END=10034802 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:90:33:0,90,1062 +20 10034803 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:80:34:0,80,1010 +20 10034804 . A . . END=10034807 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:34:0,90,1350 +20 10034808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:78:36:0,78,1084 +20 10034809 . G . . END=10034813 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:99:33:0,99,1033 +20 10034814 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,1009 +20 10034815 . G . . END=10034816 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034817 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,1010 +20 10034818 . T . . END=10034825 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:90:30:0,90,986 +20 10034826 . C . . END=10034837 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:80:30:0,80,1008 +20 10034838 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034839 . A . . END=10034848 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:84:31:0,84,1260 +20 10034849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10034850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10034851 . G . . END=10034853 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10034854 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:77:32:0,77,920 +20 10034855 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:93:32:0,93,1395 +20 10034856 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:79:32:0,79,901 +20 10034857 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:88:33:0,88,966 +20 10034858 . A . . END=10034868 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10034869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:82:34:0,82,1029 +20 10034870 . T . . END=10034873 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:93:31:0,93,950 +20 10034874 . T . . END=10034878 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:99:33:0,99,995 +20 10034879 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10034880 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:75:33:0,75,1002 +20 10034881 . A . . END=10034889 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:32:0,90,1350 +20 10034890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:35:88:35:0,88,955 +20 10034891 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10034892 . G . . END=10034901 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:93:34:0,93,1395 +20 10034902 . C . . END=10035153 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:46:99:37:0,99,1159 +20 10035154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:92:41:0,92,1186 +20 10035155 . A . . END=10035167 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:99:39:0,114,1187 +20 10035168 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:98:41:0,98,1233 +20 10035169 . G . . END=10035179 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:99:38:0,105,1184 +20 10035180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:90:39:0,90,1179 +20 10035181 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:85:39:0,85,1156 +20 10035182 . C . . END=10035334 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:99:37:0,99,1113 +20 10035335 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:40:92:40:0,92,1255 +20 10035336 . T . . END=10035343 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:42:99:41:0,111,1326 +20 10035344 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:41:79:41:0,79,1113 +20 10035345 . T . . END=10035384 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:43:99:37:0,99,1131 +20 10035385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:86:38:0,86,1096 +20 10035386 . G . . END=10035388 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:93:36:0,93,1395 +20 10035389 . T . . END=10035396 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10035397 . T . . END=10035410 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10035411 . G . . END=10035413 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035414 . C . . END=10035417 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:33:0,96,1440 +20 10035418 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035419 . G . . END=10035423 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:96:34:0,96,1440 +20 10035424 . C . . END=10035427 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10035428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:34:85:34:0,85,921 +20 10035429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:33:99:33:0,99,930 +20 10035430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:32:96:32:0,96,987 +20 10035431 . C . . END=10035441 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:36:99:34:0,99,1067 +20 10035442 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:97:38:0,97,1113 +20 10035443 . T . . END=10035446 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:99:37:0,102,1153 +20 10035447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:96:37:0,96,1127 +20 10035448 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:37:99:37:0,99,1485 +20 10035449 . T . . END=10035452 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:96:37:0,96,1440 +20 10035453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:39:99:39:0,99,1485 +20 10035454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:38:92:38:0,92,1174 +20 10035455 . T . . END=10035615 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:44:99:37:0,102,1178 +20 10035616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:44:98:44:0,98,1200 +20 10035617 . T . . END=10035703 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:50:99:44:0,107,1304 +20 10035704 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:51:90:51:0,90,1305 +20 10035705 . T . . END=10036106 GT:DP:GQ:MIN_DP:PL ./.:79:99:55:0,120,1800 ./.:50:99:40:0,100,1200 +20 10036107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:1:67:0,1,1807 ./.:50:99:40:0,100,1200 +20 10036108 . C . . END=10036140 GT:DP:GQ:MIN_DP:PL ./.:53:99:41:0,102,1504 ./.:50:99:40:0,100,1200 +20 10036141 . C . . . GT:DP:GQ:MIN_DP:PL ./.:46:32:46:0,32,1246 ./.:50:99:40:0,100,1200 +20 10036142 . T . . END=10036146 GT:DP:GQ:MIN_DP:PL ./.:51:99:48:0,103,1665 ./.:50:99:40:0,100,1200 +20 10036147 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:93:44:0,93,1481 ./.:50:99:40:0,100,1200 +20 10036148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:89:43:0,89,1557 ./.:50:99:40:0,100,1200 +20 10036149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:44:92:44:0,92,1471 ./.:50:99:40:0,100,1200 +20 10036150 . A . . END=10036156 GT:DP:GQ:MIN_DP:PL ./.:41:99:41:0,105,1433 ./.:50:99:40:0,100,1200 +20 10036157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:81:42:0,81,1385 ./.:50:99:40:0,100,1200 +20 10036158 . T . . END=10036160 GT:DP:GQ:MIN_DP:PL ./.:42:99:40:0,117,1755 ./.:50:99:40:0,100,1200 +20 10036161 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:82:42:0,82,1514 ./.:50:99:40:0,100,1200 +20 10036162 . G . . END=10036428 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:50:99:40:0,100,1200 +20 10036429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:42:96:42:0,96,1280 +20 10036430 . C . . END=10036633 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:52:99:38:0,104,1156 +20 10036634 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:55:93:55:0,93,1592 +20 10036635 . T . . END=10036663 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:56:99:52:0,119,1634 +20 10036664 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:54:98:54:0,98,1553 +20 10036665 . T . . END=10036875 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:53:99:39:0,99,1224 +20 10036876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:92:39:0,92,1184 +20 10036877 . A . . END=10036879 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:37:99:37:0,102,1530 +20 10036880 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:37:78:37:0,78,1099 +20 10036881 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:96:36:0,96,1440 +20 10036882 . A . . END=10036889 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:99:37:0,99,1485 +20 10036890 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:39:93:39:0,93,1162 +20 10036891 . A . . END=10036896 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:99:35:0,99,1485 +20 10036897 . C . . END=10036899 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:36:90:36:0,90,1350 +20 10036900 . G . . END=10036910 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:34:81:29:0,81,1215 +20 10036911 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:28:67:28:0,67,862 +20 10036912 . C . . END=10036913 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:81:28:0,81,1215 +20 10036914 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:59:29:0,59,842 +20 10036915 . T . . END=10036925 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:75:28:0,75,1125 +20 10036926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:81:29:0,81,1215 +20 10036927 . G . . END=10036929 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,113,1513 ./.:29:78:27:0,78,1170 +20 10036930 . CGATAGCCCTAGCCCTAGATA C, . . BaseQRankSum=0.200;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=404447,129;ReadPosRankSum=0.200 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036931 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036932 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036933 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036934 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036935 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036936 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036937 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036938 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036939 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036940 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036941 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036942 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036943 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036944 . C *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036945 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036946 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036947 . G *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036948 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036949 . T *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036950 . A *, . . DP=129 GT:AD:DP:GQ:PL:SB ./.:39,29,0:68:99:1074,0,5571,1191,5665,6856:11,28,15,14 ./.:20,13,0:33:99:487,0,3108,547,3148,3695:8,12,6,7 +20 10036951 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:0:77:0,0,1197 ./.:33:0:33:0,0,569 +20 10036952 . A . . END=10036956 GT:DP:GQ:MIN_DP:PL ./.:74:99:70:0,120,1800 ./.:33:90:33:0,90,1059 +20 10036957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:37:70:0,37,2472 ./.:35:37:35:0,37,931 +20 10036958 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:40:70:0,40,2490 ./.:35:39:35:0,39,926 +20 10036959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:70:0,120,1800 ./.:36:96:36:0,96,1126 +20 10036960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:41:70:0,41,2579 ./.:36:41:36:0,41,1033 +20 10036961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:40:70:0,40,2472 ./.:33:34:33:0,34,944 +20 10036962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:48:69:0,48,2428 ./.:35:40:35:0,40,990 +20 10036963 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:32:72:0,32,2462 ./.:36:44:36:0,44,951 +20 10036964 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:39:71:0,39,2535 ./.:36:43:36:0,43,1033 +20 10036965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:73:0,120,1800 ./.:36:93:36:0,93,1395 +20 10036966 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:60:74:0,60,2768 ./.:36:42:36:0,42,1044 +20 10036967 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:74:0,120,1800 ./.:34:93:34:0,93,1395 +20 10036968 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:64:74:0,64,2707 ./.:35:36:35:0,36,944 +20 10036969 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:36:35:0,36,944 +20 10036970 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:38:35:0,38,991 +20 10036971 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:35:34:0,35,958 +20 10036972 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:90:34:0,90,1350 +20 10036973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:34:37:34:0,37,982 +20 10036974 . A . . END=10036990 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:31:90:30:0,90,901 +20 10036991 . A . . END=10036997 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:36:99:34:0,99,1163 +20 10036998 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:36:84:36:0,84,1068 +20 10036999 . T . . END=10037011 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:37:0,105,1575 +20 10037012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:84:39:0,84,1111 +20 10037013 . A . . END=10037021 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:38:0,102,1222 +20 10037022 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:61:39:0,61,1130 +20 10037023 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:96:39:0,96,1440 +20 10037024 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:40:99:40:0,99,1485 +20 10037025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:40:91:40:0,91,1220 +20 10037026 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:99:39:0,99,1485 +20 10037027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:39:92:39:0,92,1204 +20 10037028 . A . . END=10037029 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:99:37:0,99,1485 +20 10037030 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:97:38:0,97,1133 +20 10037031 . A . . END=10037035 GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:35:99:35:0,99,1485 +20 10037036 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:72:0,107,1800 ./.:38:98:38:0,98,1104 +20 10037037 . C T, . . BaseQRankSum=3.50;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=-1.193e+00;RAW_MQandDP=293262,81;ReadPosRankSum=-1.694e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,42,0:81:99:.:1465,0,1124,1580,1251,2831:28,11,28,14 ./.:.:37:99:35:0,102,1530,102,1530,1530 +20 10037038 . G . . END=10037051 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:37:99:35:0,102,1530 +20 10037052 . T . . END=10037054 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:35:87:35:0,87,1000 +20 10037055 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:35:99:35:0,99,1485 +20 10037056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:36:78:36:0,78,1030 +20 10037057 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:34:85:34:0,85,966 +20 10037058 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:35:99:35:0,102,1530 +20 10037059 . T . . END=10037060 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:36:96:36:0,96,1440 +20 10037061 . A . . END=10037072 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:38:99:34:0,99,1080 +20 10037073 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:37:96:37:0,96,1440 +20 10037074 . T . . END=10037076 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:41:99:39:0,99,1485 +20 10037077 . C . . END=10037088 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:38:90:37:0,90,1072 +20 10037089 . G . . END=10037090 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:35:84:35:0,84,1260 +20 10037091 . A . . END=10037094 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:37:75:36:0,75,1125 +20 10037095 . A . . END=10037097 GT:DP:GQ:MIN_DP:PL ./.:92:99:80:0,111,1665 ./.:38:60:35:0,60,900 +20 10037098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:86:9:86:0,9,2910 ./.:38:60:35:0,60,900 +20 10037099 . A . . END=10037100 GT:DP:GQ:MIN_DP:PL ./.:89:90:88:0,90,1350 ./.:38:60:35:0,60,900 +20 10037101 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:81:87:0,81,1215 ./.:39:51:39:0,51,765 +20 10037102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:90:72:90:0,72,1080 ./.:39:51:39:0,51,765 +20 10037103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:66:90:0,66,990 ./.:40:48:40:0,48,720 +20 10037104 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:0:89:0,0,2830 ./.:38:39:38:0,39,931 +20 10037105 . A . . END=10037106 GT:DP:GQ:MIN_DP:PL ./.:89:54:88:0,54,810 ./.:39:42:38:0,42,630 +20 10037107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:89:54:88:0,54,810 ./.:38:45:38:0,45,675 +20 10037108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:21:85:0,21,315 ./.:39:33:38:0,33,495 +20 10037109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:18:84:0,18,270 ./.:39:33:38:0,33,495 +20 10037110 . T TGATA, . . DP=111;ExcessHet=3.01;RAW_MQandDP=371419,111 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2818,189,0,2819,190,2820:0,0,35,26 ./.:0,36,0:36:99:1691,114,0,1691,114,1691:0,0,19,17 +20 10037111 . G . . . GT:DP:GQ:MIN_DP:PL ./.:84:0:84:0,0,0 ./.:43:0:43:0,0,0 +20 10037112 . A . . END=10037113 GT:DP:GQ:MIN_DP:PL ./.:83:99:81:0,120,1800 ./.:43:54:43:0,54,810 +20 10037114 . A . . END=10037116 GT:DP:GQ:MIN_DP:PL ./.:83:99:81:0,120,1800 ./.:45:57:44:0,57,855 +20 10037117 . T . . END=10037121 GT:DP:GQ:MIN_DP:PL ./.:83:99:81:0,120,1800 ./.:45:60:42:0,60,900 +20 10037122 . A . . END=10037124 GT:DP:GQ:MIN_DP:PL ./.:80:0:79:0,0,1989 ./.:45:60:42:0,60,900 +20 10037125 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:0:79:0,0,1989 ./.:44:54:44:0,54,810 +20 10037126 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:0:79:0,0,1989 ./.:48:33:45:0,33,495 +20 10037127 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:85:79:0,85,2945 ./.:48:33:45:0,33,495 +20 10037128 . T . . END=10037131 GT:DP:GQ:MIN_DP:PL ./.:77:99:74:0,114,1710 ./.:48:33:45:0,33,495 +20 10037132 . T . . END=10037134 GT:DP:GQ:MIN_DP:PL ./.:73:0:72:0,0,1990 ./.:48:33:45:0,33,495 +20 10037135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:70:0,111,1665 ./.:48:33:45:0,33,495 +20 10037136 . T . . END=10037137 GT:DP:GQ:MIN_DP:PL ./.:70:99:70:0,111,1665 ./.:47:27:47:0,27,405 +20 10037138 . G . . END=10037140 GT:DP:GQ:MIN_DP:PL ./.:70:93:68:0,93,1395 ./.:46:21:42:0,21,315 +20 10037141 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:0:68:0,0,1786 ./.:46:21:42:0,21,315 +20 10037142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:0:68:0,0,1786 ./.:42:18:42:0,18,270 +20 10037143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:0:68:0,0,1786 ./.:41:15:41:0,15,225 +20 10037144 . TGATA T,TGATAGATA,TGATAGATAGATA, . . DP=110;ExcessHet=3.01;RAW_MQandDP=329352,110 GT:AD:DP:GQ:PL:SB ./.:0,0,0,36,0:36:99:1861,1864,1866,1864,1866,1866,127,129,129,0,1864,1866,1866,129,1866:0,0,15,21 ./.:0,18,11,0,0:29:99:1218,461,407,756,0,724,1218,462,757,1218,1218,462,757,1218,1218:0,0,13,16 +20 10037145 . G *, . . DP=115 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:0:75:0,0,8,0,8,8 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037146 . A *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,117,1755,117,1755,1755 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037147 . T *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,117,1755,117,1755,1755 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037148 . A *, . . DP=105 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:65:0,117,1755,117,1755,1755 ./.:0,18,0:29:99:.:1218,461,407,1218,462,1218:0,0,13,16 +20 10037149 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:39:0:39:0,0,113 +20 10037150 . A . . END=10037154 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:38:81:37:0,81,1060 +20 10037155 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:78:37:0,78,1049 +20 10037156 . A . . END=10037159 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:87:37:0,87,1305 +20 10037160 . A . . END=10037165 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:38:90:36:0,90,1350 +20 10037166 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:38:89:38:0,89,1083 +20 10037167 . T . . END=10037177 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:93:36:0,93,1395 +20 10037178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:79:37:0,79,1070 +20 10037179 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:95:37:0,95,1065 +20 10037180 . A . . END=10037181 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:38:99:37:0,99,1485 +20 10037182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:96:37:0,96,1440 +20 10037183 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:35:72:35:0,72,1024 +20 10037184 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:36:99:36:0,99,1485 +20 10037185 . G . . END=10037186 GT:DP:GQ:MIN_DP:PL ./.:70:99:65:0,117,1755 ./.:37:74:36:0,74,1017 +20 10037187 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:0:68:0,0,2259 ./.:37:99:37:0,105,1575 +20 10037188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:66:0,120,1800 ./.:37:99:37:0,105,1575 +20 10037189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:50:67:0,50,2476 ./.:37:98:37:0,98,1114 +20 10037190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:62:67:0,62,2523 ./.:38:99:37:0,102,1530 +20 10037191 . T . . END=10037192 GT:DP:GQ:MIN_DP:PL ./.:67:99:66:0,120,1800 ./.:38:99:37:0,102,1530 +20 10037193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:95:68:0,95,2607 ./.:38:99:37:0,102,1530 +20 10037194 . T . . END=10037195 GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,101,1800 ./.:38:99:37:0,102,1530 +20 10037196 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:69:0,101,1800 ./.:37:93:37:0,93,1098 +20 10037197 . A . . END=10037198 GT:DP:GQ:MIN_DP:PL ./.:69:86:68:0,86,2535 ./.:40:99:38:0,99,1208 +20 10037199 . A . . END=10037222 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:40:99:38:0,99,1208 +20 10037223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:95:37:0,95,1043 +20 10037224 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:68:38:0,68,994 +20 10037225 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:82:37:0,82,1049 +20 10037226 . C . . END=10037245 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:37:0,106,1081 +20 10037246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:98:41:0,98,1200 +20 10037247 . T . . END=10037251 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:40:0,111,1665 +20 10037252 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:79:38:0,79,1062 +20 10037253 . G . . END=10037294 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:39:0,109,1136 +20 10037295 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:96:41:0,96,1152 +20 10037296 . C . . END=10037421 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:44:99:36:0,103,1035 +20 10037422 . T . . END=10037423 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:96:38:0,96,1045 +20 10037424 . A . . END=10037429 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:34:0,99,1485 +20 10037430 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:96:37:0,96,1044 +20 10037431 . C . . END=10037446 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:35:0,99,1157 +20 10037447 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:89:36:0,89,892 +20 10037448 . A . . END=10037452 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:93:33:0,93,999 +20 10037453 . T . . END=10037455 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:38:0,99,1485 +20 10037456 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:98:38:0,98,1083 +20 10037457 . A . . END=10037461 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:35:0,99,1082 +20 10037462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:85:35:0,85,1019 +20 10037463 . T . . END=10037485 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:36:99:33:0,99,997 +20 10037486 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:84:38:0,84,1050 +20 10037487 . C . . END=10037510 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:39:99:36:0,99,1167 +20 10037511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:42:87:42:0,87,1245 +20 10037512 . G . . END=10037527 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:38:0,105,1162 +20 10037528 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:78:41:0,78,1210 +20 10037529 . G . . END=10037588 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:41:99:38:0,104,1170 +20 10037589 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:97:37:0,97,1108 +20 10037590 . A . . END=10037603 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:40:99:38:0,105,1575 +20 10037604 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:94:37:0,94,1063 +20 10037605 . A . . END=10037636 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:38:99:36:0,102,1164 +20 10037637 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:93:37:0,93,1081 +20 10037638 . C . . END=10037639 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:99:37:0,102,1530 +20 10037640 . G . . END=10037647 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:90:34:0,90,1350 +20 10037648 . A . . END=10037649 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:84:34:0,84,1260 +20 10037650 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:34:78:34:0,78,1170 +20 10037651 . C . . END=10037652 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:81:33:0,81,1215 +20 10037653 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:78:33:0,78,1170 +20 10037654 . G . . END=10037660 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:81:30:0,81,1215 +20 10037661 . C . . END=10037663 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:90:32:0,90,1350 +20 10037664 . T . . END=10037666 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:81:28:0,81,1215 +20 10037667 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:77:31:0,77,902 +20 10037668 . C . . END=10037676 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:81:30:0,81,1215 +20 10037677 . A . . END=10037678 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:64:28:0,64,806 +20 10037679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:30:73:30:0,73,902 +20 10037680 . T . . END=10037688 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:81:29:0,81,887 +20 10037689 . T . . END=10037690 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:31:90:30:0,90,924 +20 10037691 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:29:87:29:0,87,907 +20 10037692 . C . . END=10037695 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:32:93:31:0,93,846 +20 10037696 . C . . END=10037699 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:99:33:0,99,982 +20 10037700 . A . . END=10037703 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:33:96:32:0,96,993 +20 10037704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:35:89:35:0,89,1033 +20 10037705 . C . . END=10037708 GT:DP:GQ:MIN_DP:PL ./.:71:99:49:0,120,1800 ./.:37:99:36:0,99,1162 +20 10037709 . A T, . . BaseQRankSum=0.120;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.934;RAW_MQandDP=386041,108;ReadPosRankSum=1.15 GT:AD:DP:GQ:PL:SB ./.:39,32,0:71:99:1032,0,1354,1150,1450,2600:24,15,19,13 ./.:17,18,0:35:99:460,0,435,511,489,1000:6,11,4,14 +20 10037710 . A . . END=10037717 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:37:0,100,1131 +20 10037718 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:96:38:0,96,1024 +20 10037719 . G . . END=10037739 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:36:0,99,1191 +20 10037740 . C A, . . BaseQRankSum=-2.504e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.545 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:34,2,0:36:88:.:0,88,1080,102,1085,1099:15,19,2,0 +20 10037741 . A . . END=10037948 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:46:99:34:0,99,1115 +20 10037949 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:50:95:50:0,95,1374 +20 10037950 . G . . END=10037992 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:48:99:38:0,100,1203 +20 10037993 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:88:39:0,88,1159 +20 10037994 . C . . END=10038068 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:37:0,99,1156 +20 10038069 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:90:38:0,90,1157 +20 10038070 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:38:0,102,1530 +20 10038071 . C . . END=10038083 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:90:33:0,90,1010 +20 10038084 . A . . END=10038145 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:99:33:0,99,1003 +20 10038146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:96:37:0,96,1115 +20 10038147 . C . . END=10038165 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:37:0,106,1137 +20 10038166 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:43:88:43:0,88,1209 +20 10038167 . T . . END=10038187 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:37:0,102,1332 +20 10038188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:88:40:0,88,1228 +20 10038189 . T . . END=10038210 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:99:38:0,102,1181 +20 10038211 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:82:39:0,82,1142 +20 10038212 . T . . END=10038216 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:37:0,108,1144 +20 10038217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:91:37:0,91,1001 +20 10038218 . A . . END=10038237 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:99:33:0,99,963 +20 10038238 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:96:36:0,96,1117 +20 10038239 . A . . END=10038241 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038242 . C . . END=10038244 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:93:34:0,93,1395 +20 10038245 . G . . END=10038249 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:35:0,99,1485 +20 10038250 . A . . END=10038253 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:94:34:0,94,1079 +20 10038254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10038255 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:90:35:0,90,1085 +20 10038256 . G . . END=10038264 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:34:0,99,1058 +20 10038265 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:93:36:0,93,1073 +20 10038266 . A . . END=10038273 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:35:0,99,1160 +20 10038274 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:93:36:0,93,1111 +20 10038275 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:99:38:0,105,1575 +20 10038276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:85:38:0,85,1147 +20 10038277 . T . . END=10038287 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:75:36:0,75,1047 +20 10038289 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:88:35:0,88,1016 +20 10038290 . T . . END=10038292 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:91:34:0,91,1059 +20 10038293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:79:32:0,79,934 +20 10038294 . T . . END=10038298 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:90:33:0,90,1350 +20 10038299 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:83:33:0,83,992 +20 10038300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:32:0,90,1350 +20 10038301 . C . . END=10038304 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:81:30:0,81,1215 +20 10038305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:79:30:0,79,909 +20 10038306 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:81:30:0,81,1215 +20 10038307 . G . . END=10038308 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:75:30:0,75,1125 +20 10038309 . T . . END=10038314 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:31:0,84,1260 +20 10038315 . T . . END=10038316 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:93:33:0,93,1395 +20 10038317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:89:34:0,89,1071 +20 10038318 . T . . END=10038326 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:31:0,90,1350 +20 10038327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:75:33:0,75,982 +20 10038328 . A . . END=10038341 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:30:0,84,946 +20 10038342 . C . . END=10038344 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:29:74:29:0,74,761 +20 10038345 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:30:84:30:0,84,1260 +20 10038346 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:76:31:0,76,850 +20 10038347 . T . . END=10038348 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:84:30:0,84,1260 +20 10038349 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:31:67:31:0,67,902 +20 10038350 . T . . END=10038355 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:84:31:0,84,1260 +20 10038356 . A . . END=10038360 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:32:90:31:0,90,1350 +20 10038361 . A . . END=10038367 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:33:0,99,1035 +20 10038368 . C . . END=10038369 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:81:33:0,81,942 +20 10038370 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10038371 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:85:34:0,85,1028 +20 10038372 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10038373 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:98:33:0,98,913 +20 10038374 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:33:61:33:0,61,918 +20 10038375 . C . . END=10038379 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:99:34:0,99,1038 +20 10038380 . T . . END=10038381 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:90:34:0,90,1350 +20 10038382 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:34:86:34:0,86,1048 +20 10038383 . G . . END=10038384 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:90:33:0,90,1350 +20 10038385 . A . . END=10038388 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10038389 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:36:97:36:0,97,1094 +20 10038390 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:35:89:35:0,89,1051 +20 10038391 . A . . END=10038400 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:37:99:35:0,104,1056 +20 10038401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:41:94:41:0,94,1126 +20 10038402 . A . . END=10038407 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:42:99:41:0,114,1710 +20 10038408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:41:96:41:0,96,1280 +20 10038409 . T . . END=10038429 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:37:0,100,1116 +20 10038430 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:38:86:38:0,86,1122 +20 10038431 . T . . END=10038437 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:39:99:38:0,111,1181 +20 10038438 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:40:93:40:0,93,1195 +20 10038439 . T . . END=10038524 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:53:99:41:0,99,1277 +20 10038525 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:57:96:57:0,96,1440 +20 10038526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:60:99:60:0,99,1485 +20 10038527 . T . . END=10038533 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:60:90:60:0,90,1350 +20 10038534 . CTTGT C, . . BaseQRankSum=-1.936e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=0.962;RAW_MQandDP=213700,59;ReadPosRankSum=0.880 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038535 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038536 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038537 . G *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038538 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:71:99:54:0,120,1800,120,1800,1800 ./.:22,26,0:48:99:.:1014,0,1079,1080,1158,2238:12,10,12,14 +20 10038539 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:57:0:57:0,0,101 +20 10038540 . T . . END=10038582 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,120,1800 ./.:50:99:44:0,114,1304 +20 10038583 . C . . . GT:DP:GQ:MIN_DP:PL ./.:55:91:55:0,91,1806 ./.:50:99:44:0,114,1304 +20 10038584 . A . . END=10038639 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:50:99:44:0,114,1304 +20 10038640 . A C, . . BaseQRankSum=-1.630e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=162000,45;ReadPosRankSum=0.213 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:54:0,120,1800,120,1800,1800 ./.:23,22,0:45:99:.:579,0,582,648,648,1296:9,14,18,4 +20 10038641 . A . . END=10038835 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:55:99:38:0,99,1194 +20 10038836 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:82:41:0,82,1234 +20 10038837 . C . . END=10038849 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:39:0,111,1297 +20 10038850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:42:94:42:0,94,1268 +20 10038851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:42:99:42:0,117,1755 +20 10038852 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:88:41:0,88,1268 +20 10038853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,109,1277 +20 10038854 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:90:41:0,90,1272 +20 10038855 . T . . END=10038857 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:99:40:0,106,1260 +20 10038858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:86:40:0,86,1212 +20 10038859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,111,1665 +20 10038860 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:89:41:0,89,1251 +20 10038861 . G . . END=10038863 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:38:0,102,1530 +20 10038864 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:88:41:0,88,1102 +20 10038865 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:41:99:41:0,99,1195 +20 10038866 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:83:38:0,83,1140 +20 10038867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:39:0,102,1530 +20 10038868 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:84:39:0,84,1113 +20 10038869 . C . . END=10038876 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:37:99:36:0,105,1117 +20 10038877 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:86:36:0,86,1073 +20 10038878 . T . . END=10038881 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:99:35:0,102,1105 +20 10038882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:36:81:36:0,81,1005 +20 10038883 . T . . END=10038890 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:37:99:36:0,102,1530 +20 10038891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:91:38:0,91,1114 +20 10038892 . A . . END=10038901 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:38:99:37:0,99,1144 +20 10038902 . T . . END=10038922 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:90:31:0,90,961 +20 10038923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:76:31:0,76,940 +20 10038924 . A . . END=10038925 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:90:31:0,90,999 +20 10038926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:31:87:31:0,87,1305 +20 10038927 . A . . END=10038930 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:33:90:32:0,90,1350 +20 10038931 . C . . END=10038936 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:35:99:34:0,99,1083 +20 10038937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:88:34:0,88,1000 +20 10038938 . T . . END=10038982 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:39:99:34:0,99,1019 +20 10038983 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:34:71:34:0,71,973 +20 10038984 . T . . END=10038993 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:40:99:37:0,99,1485 +20 10038994 . C T, . . BaseQRankSum=2.96;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-2.350e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:54:0,120,1800,120,1800,1800 ./.:19,19,0:38:99:.:524,0,452,581,509,1090:14,5,9,10 +20 10038995 . A . . END=10039370 GT:DP:GQ:MIN_DP:PL ./.:76:99:54:0,120,1800 ./.:52:99:38:0,100,1150 +20 10039371 . T G, . . BaseQRankSum=-1.667e+00;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=428400,119;ReadPosRankSum=0.510 GT:AD:DP:GQ:PL:SB ./.:34,40,0:74:99:1353,0,1194,1455,1315,2770:15,19,24,16 ./.:28,17,0:45:99:411,0,777,495,828,1324:10,18,9,8 +20 10039372 . T . . END=10039503 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:48:99:43:0,107,1307 +20 10039504 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:43:96:43:0,96,1239 +20 10039505 . A . . END=10039707 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:49:99:39:0,102,1236 +20 10039708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:41:92:41:0,92,1304 +20 10039709 . A . . END=10039832 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:49:99:41:0,104,1340 +20 10039833 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:53:97:53:0,97,1404 +20 10039834 . T . . END=10040087 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:50:99:40:0,100,1242 +20 10040088 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:46:94:46:0,94,1393 +20 10040089 . T . . END=10040420 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:53:99:43:0,100,1261 +20 10040421 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:44:74:44:0,74,1237 +20 10040422 . A . . END=10040436 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:43:99:40:0,99,1485 +20 10040437 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:41:90:41:0,90,1200 +20 10040438 . A . . END=10040439 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:41:99:40:0,102,1530 +20 10040440 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:39:96:39:0,96,1162 +20 10040441 . T . . END=10040442 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:40:99:39:0,102,1530 +20 10040443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:36:96:36:0,96,1121 +20 10040444 . A . . END=10040484 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:39:99:34:0,100,1044 +20 10040485 . T . . END=10040486 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:95:41:0,95,1232 +20 10040487 . C . . END=10040512 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:41:99:39:0,108,1245 +20 10040513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:82:42:0,82,1240 +20 10040514 . T . . END=10040537 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:40:99:38:0,105,1109 +20 10040538 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:38:92:38:0,92,1161 +20 10040539 . T . . END=10040564 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:39:99:36:0,100,1047 +20 10040565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:41:86:41:0,86,1192 +20 10040566 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:99:42:0,120,1800 +20 10040567 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:96:42:0,96,1208 +20 10040568 . C . . END=10040578 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:44:99:39:0,99,1029 +20 10040579 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:46:95:46:0,95,1300 +20 10040580 . A . . END=10040634 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:46:99:42:0,111,1303 +20 10040635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:45:87:45:0,87,1333 +20 10040636 . T . . END=10040647 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:44:99:43:0,119,1332 +20 10040648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:44:83:44:0,83,1294 +20 10040649 . A . . END=10040666 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:46:99:43:0,104,1286 +20 10040667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:48:86:48:0,86,1339 +20 10040668 . C . . END=10040726 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:46:99:43:0,99,1271 +20 10040727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:82:42:0,82,1185 +20 10040728 . T . . END=10040735 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:99:40:0,99,1485 +20 10040736 . T . . END=10040739 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:39:90:36:0,90,1350 +20 10040740 . T . . END=10040742 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:41:84:40:0,84,1260 +20 10040743 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:43:78:43:0,78,1170 +20 10040744 . C . . END=10040748 GT:DP:GQ:MIN_DP:PL ./.:76:99:56:0,105,1575 ./.:42:60:36:0,60,900 +20 10040749 . T . . END=10040752 GT:DP:GQ:MIN_DP:PL ./.:87:87:84:0,87,1305 ./.:42:60:36:0,60,900 +20 10040753 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:90:88:0,90,1350 ./.:42:60:36:0,60,900 +20 10040754 . T . . . GT:DP:GQ:MIN_DP:PL ./.:91:81:91:0,81,1215 ./.:42:60:36:0,60,900 +20 10040755 . G . . . GT:DP:GQ:MIN_DP:PL ./.:89:69:89:0,69,1035 ./.:42:60:36:0,60,900 +20 10040756 . T . . END=10040758 GT:DP:GQ:MIN_DP:PL ./.:89:45:89:0,45,675 ./.:42:60:36:0,60,900 +20 10040759 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:48:89:0,48,720 ./.:42:60:36:0,60,900 +20 10040760 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:51:89:0,51,765 ./.:42:60:36:0,60,900 +20 10040761 . C . . . GT:DP:GQ:MIN_DP:PL ./.:88:48:88:0,48,720 ./.:42:60:36:0,60,900 +20 10040762 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:42:87:0,42,630 ./.:42:60:36:0,60,900 +20 10040763 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:30:87:0,30,450 ./.:39:57:38:0,57,855 +20 10040764 . T . . END=10040766 GT:DP:GQ:MIN_DP:PL ./.:85:39:84:0,39,585 ./.:39:57:38:0,57,855 +20 10040767 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:36:83:0,36,540 ./.:39:57:38:0,57,855 +20 10040768 . T . . END=10040771 GT:DP:GQ:MIN_DP:PL ./.:83:15:81:0,15,225 ./.:40:54:39:0,54,810 +20 10040772 . C CT,CTT, . . BaseQRankSum=0.374;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=358648,120;ReadPosRankSum=-4.270e-01 GT:AD:DP:GQ:PL:SB ./.:0,70,0,0:70:99:2033,210,0,2034,210,2034,2034,210,2034,2034:0,0,37,33 ./.:17,0,20,0:37:99:640,692,1318,0,626,563,692,1318,626,1318:7,10,10,10 +20 10040773 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:0:81:0,0,0 ./.:42:0:42:0,0,240 +20 10040774 . T . . END=10040778 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:44:87:44:0,87,1305 +20 10040779 . T . . END=10040780 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:44:90:44:0,90,1350 +20 10040781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:42:10:42:0,10,1085 +20 10040782 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:39:28:39:0,28,1031 +20 10040783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:42:77:42:0,77,1191 +20 10040784 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:40:68:40:0,68,1127 +20 10040785 . T . . END=10040792 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:41:81:39:0,81,1215 +20 10040793 . T . . END=10040795 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,99,1485 ./.:41:72:38:0,72,1080 +20 10040796 . T . . END=10040797 GT:DP:GQ:MIN_DP:PL ./.:78:93:77:0,93,1395 ./.:41:72:38:0,72,1080 +20 10040798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:84:78:0,84,1260 ./.:41:72:38:0,72,1080 +20 10040799 . T . . END=10040801 GT:DP:GQ:MIN_DP:PL ./.:79:72:78:0,72,1080 ./.:40:66:38:0,66,990 +20 10040802 . G . . END=10040803 GT:DP:GQ:MIN_DP:PL ./.:79:63:78:0,63,945 ./.:40:66:38:0,66,990 +20 10040804 . A . . END=10040805 GT:DP:GQ:MIN_DP:PL ./.:78:57:77:0,57,855 ./.:40:66:38:0,66,990 +20 10040806 . T . . END=10040807 GT:DP:GQ:MIN_DP:PL ./.:79:48:78:0,48,720 ./.:39:57:38:0,57,855 +20 10040808 . A . . END=10040809 GT:DP:GQ:MIN_DP:PL ./.:80:42:79:0,42,630 ./.:39:57:38:0,57,855 +20 10040810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:15:81:0,15,225 ./.:39:57:38:0,57,855 +20 10040811 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:3:80:0,3,45 ./.:41:60:41:0,60,900 +20 10040812 . AT A, . . BaseQRankSum=0.905;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=358099,122;ReadPosRankSum=0.031 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 ./.:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040813 . T *, . . DP=122 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2645,214,0,2645,214,2645:0,0,36,35 ./.:21,16,0:37:99:367,0,494,430,542,973:10,11,6,10 +20 10040814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:0:82:0,0,0 ./.:42:0:42:0,0,275 +20 10040815 . T . . END=10040819 GT:DP:GQ:MIN_DP:PL ./.:79:99:78:0,109,1800 ./.:41:99:40:0,111,1665 +20 10040820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:75:77:0,75,2723 ./.:41:99:40:0,111,1665 +20 10040821 . T A,C, . . BaseQRankSum=-2.100e-02;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=347299,119;ReadPosRankSum=-3.470e-01 GT:AD:DP:GQ:PL:SB ./.:38,40,0,0:78:99:1200,0,1099,1314,1219,2533,1314,1219,2533,2533:20,18,21,19 ./.:39,0,1,0:40:90:0,117,1322,90,1295,1292,117,1322,1295,1322:17,22,0,1 +20 10040822 . A . . END=10040945 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:40:0,108,1209 +20 10040946 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:96:40:0,96,1140 +20 10040947 . T . . END=10040964 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:99:41:0,111,1193 +20 10040965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:86:42:0,86,1184 +20 10040966 . G . . END=10040999 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:99:38:0,105,1162 +20 10041000 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:73:37:0,73,978 +20 10041001 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:99:39:0,116,1109 +20 10041002 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:94:37:0,94,1076 +20 10041003 . G . . END=10041133 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:99:34:0,99,1068 +20 10041134 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:36:96:36:0,96,1086 +20 10041135 . C . . END=10041137 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:37:99:37:0,105,1575 +20 10041138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:36:96:36:0,96,1098 +20 10041139 . G . . END=10041201 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:35:0,101,1028 +20 10041202 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:41:98:41:0,98,1268 +20 10041203 . A . . END=10041213 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:99:36:0,103,1102 +20 10041214 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:38:98:38:0,98,1136 +20 10041215 . G . . END=10041244 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:99:37:0,100,1099 +20 10041245 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:43:98:43:0,98,1224 +20 10041246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:43:99:43:0,118,1316 +20 10041247 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:44:83:44:0,83,1191 +20 10041248 . A . . END=10041278 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:44:99:41:0,101,1215 +20 10041279 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:46:91:46:0,91,1306 +20 10041280 . G . . END=10041283 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:42:0,106,1272 +20 10041284 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:42:94:42:0,94,1249 +20 10041285 . T . . END=10041289 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:45:99:42:0,108,1620 +20 10041290 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:39:89:39:0,89,1138 +20 10041291 . T . . END=10041292 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:40:0,102,1530 +20 10041293 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:81:40:0,81,1107 +20 10041294 . A . . END=10041303 GT:DP:GQ:MIN_DP:PL ./.:71:99:54:0,119,1800 ./.:40:99:38:0,102,1530 +20 10041304 . C T, . . BaseQRankSum=3.22;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=369410,104;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL:SB ./.:0,68,0:68:99:2794,204,0,2794,204,2794:0,0,34,34 ./.:18,15,0:33:99:391,0,405,445,450,895:8,10,7,8 +20 10041305 . G . . END=10041308 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:41:99:40:0,109,1141 +20 10041309 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:94:39:0,94,1146 +20 10041310 . A . . END=10041311 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:41:99:40:0,111,1665 +20 10041312 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:85:37:0,85,1109 +20 10041313 . G . . END=10041317 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:99:37:0,101,1165 +20 10041318 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:96:38:0,96,1136 +20 10041319 . G . . END=10041321 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:99:36:0,99,1485 +20 10041322 . T . . END=10041324 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:92:37:0,92,1121 +20 10041325 . G . . END=10041328 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:99:38:0,99,1196 +20 10041329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:89:39:0,89,1177 +20 10041330 . T . . END=10041350 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:99:35:0,99,1117 +20 10041351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:97:36:0,97,1109 +20 10041352 . G . . END=10041353 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:99:34:0,102,1048 +20 10041354 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:97:36:0,97,1085 +20 10041355 . T . . END=10041373 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:99:34:0,99,1056 +20 10041374 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:35:89:35:0,89,1029 +20 10041375 . T . . END=10041385 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:99:34:0,102,1037 +20 10041386 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:90:36:0,90,1064 +20 10041387 . C . . END=10041393 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:99:36:0,102,1166 +20 10041394 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:93:36:0,93,1077 +20 10041395 . C . . END=10041405 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:99:37:0,99,1167 +20 10041406 . G . . END=10041407 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:90:36:0,90,1350 +20 10041408 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:68:36:0,68,1006 +20 10041409 . A . . END=10041413 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:87:34:0,87,1305 +20 10041414 . G . . END=10041417 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:34:90:30:0,90,935 +20 10041418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:33:73:33:0,73,935 +20 10041419 . A . . END=10041427 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:32:90:30:0,90,933 +20 10041428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:33:70:33:0,70,927 +20 10041429 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:33:84:33:0,84,945 +20 10041430 . T . . END=10041431 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:34:99:34:0,99,1485 +20 10041432 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:97:36:0,97,1104 +20 10041433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:99:36:0,105,1575 +20 10041434 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:79:36:0,79,1099 +20 10041435 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:99:37:0,105,1575 +20 10041436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:96:37:0,96,1090 +20 10041437 . A . . END=10041443 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:99:36:0,99,1141 +20 10041444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:96:39:0,96,1440 +20 10041445 . A . . END=10041449 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:99:39:0,99,1485 +20 10041450 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:61:38:0,61,1101 +20 10041451 . G . . END=10041458 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:35:99:33:0,99,1084 +20 10041459 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:35:94:35:0,94,1111 +20 10041460 . A . . END=10041465 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:99:35:0,102,1011 +20 10041466 . C . . END=10041467 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:92:36:0,92,1098 +20 10041468 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:99:37:0,99,1485 +20 10041469 . A . . END=10041473 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:90:37:0,90,1350 +20 10041474 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:78:37:0,78,1071 +20 10041475 . C . . END=10041488 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:34:90:32:0,90,1350 +20 10041489 . T . . END=10041490 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:34:99:33:0,99,1105 +20 10041491 . G . . END=10041497 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:33:90:33:0,90,1350 +20 10041498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:33:88:33:0,88,1024 +20 10041499 . A . . END=10041504 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:32:90:31:0,90,1350 +20 10041505 . T . . END=10041515 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:99:34:0,99,1485 +20 10041516 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:92:36:0,92,1049 +20 10041517 . A . . END=10041547 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:99:35:0,101,1051 +20 10041548 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:94:37:0,94,1136 +20 10041549 . T . . END=10041574 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:99:35:0,102,1124 +20 10041575 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:96:36:0,96,1440 +20 10041576 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:99:38:0,102,1063 +20 10041577 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:37:98:37:0,98,1073 +20 10041578 . T . . END=10041581 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:99:37:0,99,1485 +20 10041582 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:40:97:40:0,97,1173 +20 10041583 . C . . END=10041600 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:40:99:38:0,108,1620 +20 10041601 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:40:95:40:0,95,1196 +20 10041602 . A . . END=10041613 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:38:99:37:0,108,1620 +20 10041614 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:98:39:0,98,1125 +20 10041615 . G . . END=10041648 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:39:99:36:0,99,1079 +20 10041649 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:96:36:0,96,1098 +20 10041650 . A . . END=10041662 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:99:34:0,99,1485 +20 10041663 . G . . END=10041675 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:36:90:34:0,90,1350 +20 10041676 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:34:87:34:0,87,1305 +20 10041677 . A . . END=10041685 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:33:72:32:0,72,1080 +20 10041686 . A . . END=10041688 GT:DP:GQ:MIN_DP:PL ./.:61:99:48:0,105,1575 ./.:31:60:30:0,60,900 +20 10041689 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:93:72:0,93,1395 ./.:31:60:30:0,60,900 +20 10041690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:87:72:0,87,1305 ./.:31:60:30:0,60,900 +20 10041691 . A . . END=10041692 GT:DP:GQ:MIN_DP:PL ./.:73:69:73:0,69,1035 ./.:31:60:30:0,60,900 +20 10041693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:51:75:0,51,765 ./.:30:54:30:0,54,810 +20 10041694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:51:75:0,51,765 ./.:30:48:29:0,48,720 +20 10041695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:48:75:0,48,720 ./.:30:48:29:0,48,720 +20 10041696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:45:75:0,45,675 ./.:29:41:29:0,41,825 +20 10041697 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:12:75:0,12,180 ./.:29:42:29:0,42,630 +20 10041698 . C CAT, . . BaseQRankSum=1.89;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.844;RAW_MQandDP=361697,100;ReadPosRankSum=0.923 GT:AD:DP:GQ:PL:SB ./.:48,6,0:54:17:17,0,1425,166,1446,1612:21,27,2,4 ./.:23,0,0:23:69:0,69,825,69,825,825:12,11,0,0 +20 10041699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:5:77:0,5,2671 ./.:29:39:29:0,39,585 +20 10041700 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:27:77:0,27,405 ./.:28:36:28:0,36,540 +20 10041701 . A ATG,ATATG, . . BaseQRankSum=0.848;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=0.959;RAW_MQandDP=363190,103;ReadPosRankSum=1.12 GT:AD:DP:GQ:PL:SB ./.:8,0,48,0:56:58:1441,1582,2726,0,261,58,1575,2317,264,2201:2,6,21,27 ./.:8,0,11,0:19:99:291,346,691,0,266,568,349,679,452,810:3,5,6,5 +20 10041702 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:0:75:0,0,0 ./.:29:0:29:0,0,182 +20 10041703 . G . . END=10041707 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:69:28:0,69,1035 +20 10041708 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:40:28:0,40,739 +20 10041709 . G . . END=10041710 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:73:28:0,73,834 +20 10041711 . G . . END=10041712 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:29:0,81,1215 +20 10041713 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:75:30:0,75,870 +20 10041714 . T . . END=10041715 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041716 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:58:30:0,58,839 +20 10041717 . G . . END=10041719 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041720 . T . . END=10041730 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:72:28:0,72,1001 +20 10041731 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:69:28:0,69,1035 +20 10041732 . T . . END=10041739 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:26:0,72,823 +20 10041740 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:54:25:0,54,568 +20 10041741 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:64:27:0,64,724 +20 10041742 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:78:26:0,78,806 +20 10041743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:58:26:0,58,766 +20 10041744 . T . . END=10041748 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:70:26:0,70,817 +20 10041749 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:68:27:0,68,807 +20 10041750 . T . . END=10041752 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:75:28:0,75,1125 +20 10041753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:55:29:0,55,856 +20 10041754 . T . . END=10041761 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:28:0,72,871 +20 10041762 . T . . END=10041766 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:65:27:0,65,763 +20 10041767 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:28:0,72,1080 +20 10041768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:69:27:0,69,760 +20 10041769 . C . . END=10041780 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:72:24:0,72,727 +20 10041781 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:68:28:0,68,781 +20 10041782 . A . . END=10041784 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:81:27:0,81,806 +20 10041785 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:63:27:0,63,721 +20 10041786 . C . . END=10041793 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:81:27:0,81,850 +20 10041794 . T . . END=10041795 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:78:28:0,78,1170 +20 10041796 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:58:28:0,58,815 +20 10041797 . T . . END=10041810 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:73:26:0,73,810 +20 10041811 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:66:26:0,66,794 +20 10041812 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:75:25:0,75,766 +20 10041813 . C . . END=10041815 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:81:27:0,81,842 +20 10041816 . C . . END=10041818 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:78:27:0,78,1170 +20 10041819 . C . . END=10041821 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:30:0,81,1215 +20 10041822 . C . . END=10041824 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:75:29:0,75,854 +20 10041825 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:81:31:0,81,1215 +20 10041826 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:60:31:0,60,908 +20 10041827 . G . . END=10041833 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:87:29:0,87,893 +20 10041834 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:75:29:0,75,914 +20 10041835 . G . . END=10041837 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:87:29:0,87,917 +20 10041838 . T . . END=10041839 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,907 +20 10041840 . T . . END=10041845 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:84:30:0,84,1260 +20 10041846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:66:32:0,66,904 +20 10041847 . T . . END=10041849 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:32:0,84,1260 +20 10041850 . G . . END=10041851 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:78:29:0,78,1170 +20 10041852 . C . . END=10041853 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:33:81:32:0,81,1215 +20 10041854 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:79:31:0,79,913 +20 10041855 . C . . END=10041870 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:81:29:0,81,937 +20 10041871 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:67:31:0,67,912 +20 10041872 . T . . END=10041879 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:87:29:0,87,903 +20 10041880 . A . . END=10041882 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,924 +20 10041883 . G . . END=10041890 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:81:29:0,81,918 +20 10041891 . C . . END=10041896 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:72:28:0,72,1080 +20 10041897 . T . . END=10041901 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:66:25:0,66,780 +20 10041902 . A . . END=10041903 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:72:26:0,72,1080 +20 10041904 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:65:27:0,65,796 +20 10041905 . C . . END=10041906 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:75:27:0,75,1125 +20 10041907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:26:56:26:0,56,754 +20 10041908 . G . . END=10041909 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:72:24:0,72,713 +20 10041910 . C . . END=10041914 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:25:69:25:0,69,1035 +20 10041915 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:72:27:0,72,1080 +20 10041916 . C . . END=10041918 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:27:69:26:0,69,1035 +20 10041919 . C . . END=10041922 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:72:27:0,72,1080 +20 10041923 . C . . END=10041928 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:28:81:27:0,81,851 +20 10041929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,911 +20 10041930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:29:64:29:0,64,893 +20 10041931 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:30:90:30:0,90,897 +20 10041932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:82:31:0,82,879 +20 10041933 . T . . END=10041935 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:90:31:0,90,1350 +20 10041936 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:32:0,84,993 +20 10041937 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:64:32:0,64,930 +20 10041938 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041939 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:75:32:0,75,981 +20 10041940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041941 . T . . END=10041942 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:70:31:0,70,914 +20 10041943 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:31:87:31:0,87,1305 +20 10041944 . C . . END=10041945 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:90:32:0,90,1350 +20 10041946 . G . . END=10041949 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:84:31:0,84,1260 +20 10041950 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:32:69:32:0,69,930 +20 10041951 . C . . END=10041952 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:33:93:32:0,93,982 +20 10041953 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:87:34:0,87,1305 +20 10041954 . A . . END=10041958 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:90:33:0,90,1041 +20 10041959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:34:77:34:0,77,960 +20 10041960 . T . . END=10041962 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:96:35:0,96,1440 +20 10041963 . G . . END=10041964 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:99:35:0,105,1033 +20 10041965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:82:35:0,82,1025 +20 10041966 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:99:35:0,102,1530 +20 10041967 . A . . END=10041968 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:92:35:0,92,943 +20 10041969 . A . . END=10041970 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:86:35:0,86,1059 +20 10041971 . G . . END=10041976 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:36:0,105,1575 +20 10041977 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:35:88:35:0,88,1044 +20 10041978 . C . . END=10041981 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:99:35:0,102,1104 +20 10041982 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:89:36:0,89,968 +20 10041983 . G . . END=10041986 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:35:0,105,1007 +20 10041987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:92:36:0,92,1072 +20 10041988 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:38:99:38:0,105,1575 +20 10041989 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:36:92:36:0,92,1097 +20 10041990 . G . . END=10041992 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:99:35:0,105,1095 +20 10041993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:37:94:37:0,94,1023 +20 10041994 . T . . END=10041997 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:38:0,102,1530 +20 10041998 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:79:39:0,79,1123 +20 10041999 . A . . END=10042006 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:38:0,105,1164 +20 10042007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:38:92:38:0,92,1163 +20 10042008 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:99:39:0,114,1710 +20 10042009 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:39:80:39:0,80,1154 +20 10042010 . T . . END=10042147 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:48:99:39:0,105,1263 +20 10042148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:49:73:49:0,73,1442 +20 10042149 . A . . END=10042174 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:47:99:45:0,120,1800 +20 10042175 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:49:90:49:0,90,1419 +20 10042176 . A . . END=10042282 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:51:99:42:0,108,1271 +20 10042283 . C . . END=10042284 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:41:90:41:0,90,1159 +20 10042285 . G . . END=10042318 GT:DP:GQ:MIN_DP:PL ./.:64:99:49:0,117,1800 ./.:46:99:42:0,114,1290 +20 10042319 . C T, . . BaseQRankSum=1.66;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=381051,108;ReadPosRankSum=-8.950e-01 GT:AD:DP:GQ:PL:SB ./.:0,66,0:66:99:2687,199,0,2687,199,2687:0,0,38,28 ./.:21,21,0:42:99:563,0,514,626,577,1203:8,13,12,9 +20 10042320 . C . . END=10042340 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:48:99:43:0,117,1755 +20 10042341 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:46:94:46:0,94,1335 +20 10042342 . T . . END=10042611 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:47:99:40:0,103,1161 +20 10042612 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:40:95:40:0,95,1165 +20 10042613 . T . . END=10042618 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:40:99:39:0,114,1216 +20 10042619 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:38:98:38:0,98,1143 +20 10042620 . C . . END=10042760 GT:DP:GQ:MIN_DP:PL ./.:74:99:60:0,120,1800 ./.:48:99:40:0,114,1288 +20 10042761 . A G, . . BaseQRankSum=-2.960e-01;ClippingRankSum=0.00;DP=143;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=514800,143;ReadPosRankSum=-7.100e-02 GT:AD:DP:GQ:PL:SB ./.:0,91,0:91:99:3582,272,0,3582,272,3582:0,0,58,33 ./.:23,29,0:52:99:761,0,602,830,689,1519:13,10,14,15 +20 10042762 . G . . END=10042828 GT:DP:GQ:MIN_DP:PL ./.:91:99:79:0,120,1800 ./.:59:99:51:0,120,1800 +20 10042829 . A G, . . BaseQRankSum=-1.650e-01;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=480169,134;ReadPosRankSum=-8.090e-01 GT:AD:DP:GQ:PL:SB ./.:0,78,0:78:99:3084,235,0,3084,235,3084:0,0,42,36 ./.:24,31,0:55:99:780,0,566,852,659,1511:14,10,17,14 +20 10042830 . C . . END=10042935 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:52:99:38:0,102,1111 +20 10042936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:40:87:40:0,87,1152 +20 10042937 . C . . END=10042942 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:99:38:0,102,1530 +20 10042943 . A . . END=10042946 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:93:39:0,93,1395 +20 10042947 . T . . END=10042948 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:39:99:39:0,99,1485 +20 10042949 . G . . END=10042955 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:38:93:33:0,93,1395 +20 10042956 . A . . END=10042958 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:35:99:35:0,99,1485 +20 10042959 . T . . END=10042962 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:35:94:32:0,94,1021 +20 10042963 . A . . END=10042966 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:36:99:34:0,99,1485 +20 10042967 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:36:74:36:0,74,1048 +20 10042968 . A . . END=10042980 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:43:99:36:0,108,1088 +20 10042981 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:43:96:43:0,96,1172 +20 10042982 . C . . END=10043001 GT:DP:GQ:MIN_DP:PL ./.:65:99:56:0,120,1800 ./.:42:99:40:0,109,1146 +20 10043002 . A T, . . BaseQRankSum=3.99;ClippingRankSum=0.00;DP=127;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=313200,87;ReadPosRankSum=0.178 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:48,38,0:86:99:.:1316,0,1659,1460,1773,3233:19,29,18,20 ./.:.:42:99:40:0,109,1146,109,1146,1146 +20 10043003 . C . . END=10043005 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:99:40:0,109,1146 +20 10043006 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:95:42:0,95,1202 +20 10043007 . T . . END=10043164 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:52:99:41:0,102,1381 +20 10043165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:42:78:42:0,78,1184 +20 10043166 . T . . END=10043185 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:36:0,99,1133 +20 10043186 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:96:37:0,96,1091 +20 10043187 . T . . END=10043190 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:38:0,105,1575 +20 10043191 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1099 +20 10043192 . G . . END=10043199 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:37:0,106,1093 +20 10043200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:87:39:0,87,1093 +20 10043201 . A . . END=10043207 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,102,1530 +20 10043208 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:96:37:0,96,1440 +20 10043209 . G . . END=10043211 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,99,1485 +20 10043212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:97:37:0,97,1116 +20 10043213 . A . . END=10043214 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,102,1530 +20 10043215 . G . . END=10043220 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:90:33:0,90,1099 +20 10043221 . T . . END=10043224 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:87:34:0,87,1305 +20 10043225 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:35:0,90,1350 +20 10043226 . G . . END=10043228 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:87:31:0,87,1305 +20 10043229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:32:0,90,1350 +20 10043230 . A . . END=10043233 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:87:31:0,87,1305 +20 10043234 . A . . END=10043239 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:30:0,90,904 +20 10043240 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:77:31:0,77,904 +20 10043241 . A . . END=10043243 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:90:31:0,90,1350 +20 10043244 . T . . END=10043261 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:34:0,99,994 +20 10043262 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:92:37:0,92,1063 +20 10043263 . T . . END=10043438 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:99:36:0,102,1190 +20 10043439 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:87:39:0,87,1121 +20 10043440 . G . . END=10043471 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:37:0,99,1129 +20 10043472 . T . . END=10043478 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:96:35:0,96,1440 +20 10043479 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:77:36:0,77,968 +20 10043480 . G . . END=10043491 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:32:0,90,1015 +20 10043492 . A . . END=10043498 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:99:33:0,99,1076 +20 10043499 . G . . END=10043501 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:92:36:0,92,1084 +20 10043502 . T . . END=10043503 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:37:0,102,1530 +20 10043504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1152 +20 10043505 . T . . END=10043513 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:43:99:40:0,111,1665 +20 10043514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:89:46:0,89,1301 +20 10043515 . G . . END=10043694 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:49:99:38:0,100,1170 +20 10043695 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:90:38:0,90,1163 +20 10043696 . A . . END=10043698 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:37:0,99,1485 +20 10043699 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:94:37:0,94,1150 +20 10043700 . T . . END=10043702 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:99:36:0,99,1485 +20 10043703 . C . . END=10043719 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:32:0,90,1084 +20 10043720 . G . . END=10043724 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:33:0,99,1039 +20 10043725 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:96:34:0,96,1440 +20 10043726 . T . . END=10043728 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:87:32:0,87,1305 +20 10043729 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:90:34:0,90,1350 +20 10043730 . T . . END=10043732 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:80:34:0,80,973 +20 10043733 . T . . END=10043740 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:93:33:0,93,1395 +20 10043741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:71:33:0,71,1003 +20 10043742 . C . . END=10043748 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:90:33:0,90,1350 +20 10043749 . T . . END=10043751 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:99:36:0,99,1485 +20 10043752 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:95:36:0,95,1088 +20 10043753 . T . . END=10043757 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:99:33:0,99,1043 +20 10043758 . C . . END=10043759 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:91:32:0,91,986 +20 10043760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:34:0,99,1485 +20 10043761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:91:34:0,91,1068 +20 10043762 . A . . END=10043763 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:34:99:34:0,102,1065 +20 10043764 . C . . END=10043768 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:82:35:0,82,1022 +20 10043769 . C . . END=10043791 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:35:90:33:0,90,1035 +20 10043792 . A . . END=10043798 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:84:32:0,84,1026 +20 10043799 . A . . END=10043808 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:90:30:0,90,941 +20 10043809 . A . . END=10043813 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:84:31:0,84,1260 +20 10043814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:32:74:32:0,74,995 +20 10043815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:31:81:31:0,81,1215 +20 10043816 . A . . END=10043838 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:26:72:25:0,72,800 +20 10043839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:25:47:25:0,47,724 +20 10043840 . G . . END=10043844 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:25:72:25:0,72,784 +20 10043845 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:27:63:27:0,63,774 +20 10043846 . A . . END=10043847 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:28:78:28:0,78,1170 +20 10043848 . C . . END=10043850 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:81:29:0,81,1215 +20 10043851 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:72:29:0,72,884 +20 10043852 . G . . END=10043853 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:29:84:28:0,84,920 +20 10043854 . A . . END=10043855 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:33:93:32:0,93,1395 +20 10043856 . A . . END=10043870 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:35:0,101,1086 +20 10043871 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:80:37:0,80,1055 +20 10043872 . C . . END=10043879 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:38:99:37:0,99,1485 +20 10043880 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:96:36:0,96,1102 +20 10043881 . C . . END=10043892 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:38:0,105,1189 +20 10043893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:92:40:0,92,1246 +20 10043894 . T . . END=10043916 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:38:0,108,1257 +20 10043917 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:98:39:0,98,1176 +20 10043918 . T . . END=10044038 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:46:99:38:0,102,1145 +20 10044039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:44:97:44:0,97,1300 +20 10044040 . A . . END=10044172 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:44:99:36:0,99,1058 +20 10044173 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:95:39:0,95,1116 +20 10044174 . G . . END=10044248 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:40:99:35:0,102,1120 +20 10044249 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:79:37:0,79,1079 +20 10044250 . C . . END=10044251 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:99:36:0,102,1530 +20 10044252 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:36:91:36:0,91,998 +20 10044253 . T . . END=10044279 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:34:0,101,1028 +20 10044280 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:90:39:0,90,1175 +20 10044281 . G . . END=10044282 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:39:99:39:0,106,1216 +20 10044283 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:37:85:37:0,85,1113 +20 10044284 . G . . END=10044649 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:50:99:36:0,102,1126 +20 10044650 . A G, . . BaseQRankSum=-5.504e+00;ClippingRankSum=0.00;DP=98;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=194400,54;ReadPosRankSum=0.426 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:44:0,104,1655,104,1655,1655 ./.:24,30,0:54:99:.:652,0,625,724,714,1438:14,10,17,13 +20 10044651 . T . . END=10044848 GT:DP:GQ:MIN_DP:PL ./.:78:99:44:0,104,1655 ./.:48:99:39:0,105,1212 +20 10044849 . A G, . . DP=99;ExcessHet=3.01;RAW_MQandDP=213241,60 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,59,0:59:99:.:2120,177,0,2120,177,2120:0,0,22,37 ./.:.:48:99:39:0,105,1212,105,1212,1212 +20 10044850 . C . . END=10045077 GT:DP:GQ:MIN_DP:PL ./.:69:99:56:0,120,1800 ./.:48:99:39:0,105,1212 +20 10045078 . G T, . . DP=120;ExcessHet=3.01;RAW_MQandDP=279389,81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:0,81,0:81:99:.:3300,244,0,3300,244,3300:0,0,37,44 ./.:.:48:99:39:0,105,1212,105,1212,1212 +20 10045079 . C . . END=10045351 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:48:99:39:0,105,1212 +20 10045352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:45:87:45:0,87,1221 +20 10045353 . C . . END=10045495 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:46:99:42:0,105,1253 +20 10045496 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:47:95:47:0,95,1238 +20 10045497 . G . . END=10045512 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:48:99:45:0,120,1800 +20 10045513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:50:84:50:0,84,1420 +20 10045514 . T . . END=10045533 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:51:99:47:0,118,1535 +20 10045534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:49:80:49:0,80,1383 +20 10045535 . C . . END=10045552 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:43:99:34:0,99,1462 +20 10045553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:90:36:0,90,1068 +20 10045554 . T . . END=10045555 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10045556 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:75:36:0,75,1069 +20 10045557 . A . . END=10045558 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:36:0,102,1530 +20 10045559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:35:84:35:0,84,1055 +20 10045560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:37:91:37:0,91,1079 +20 10045561 . C . . END=10045583 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:99:36:0,105,1120 +20 10045584 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:37:95:37:0,95,1123 +20 10045585 . C . . END=10045606 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:40:99:37:0,100,1139 +20 10045607 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:87:38:0,87,1161 +20 10045608 . A . . END=10045611 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:99:39:0,111,1665 +20 10045612 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:39:89:39:0,89,1172 +20 10045613 . C . . END=10045624 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:40:99:38:0,105,1575 +20 10045625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:94:42:0,94,1284 +20 10045626 . A . . END=10045628 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:99:42:0,105,1575 +20 10045629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:42:94:42:0,94,1218 +20 10045630 . C . . END=10045631 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:99:41:0,100,1233 +20 10045632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:94:41:0,94,1251 +20 10045633 . A . . END=10045634 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:41:99:40:0,99,1485 +20 10045635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:88:38:0,88,1131 +20 10045636 . A . . END=10045637 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:99:38:0,102,1530 +20 10045638 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:38:87:38:0,87,1124 +20 10045639 . A . . END=10045640 GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:99:36:0,102,1530 +20 10045641 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:60:0,120,1800 ./.:36:86:36:0,86,1060 +20 10045642 . G C, . . BaseQRankSum=-4.850e-01;ClippingRankSum=0.00;DP=112;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=398210,112;ReadPosRankSum=-3.380e-01 GT:AD:DP:GQ:PL:SB ./.:0,81,0:81:99:3136,243,0,3136,243,3136:0,0,38,43 ./.:18,13,0:31:99:304,0,478,358,518,875:9,9,2,11 +20 10045643 . A . . END=10045644 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:38:99:37:0,99,1124 +20 10045645 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:63:39:0,63,1070 +20 10045646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:38:80:38:0,80,1104 +20 10045647 . C . . END=10045648 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:99:40:0,108,1210 +20 10045649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:48:40:0,48,1101 +20 10045650 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:82:42:0,82,1176 +20 10045651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:99:42:0,104,1280 +20 10045652 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:80:43:0,80,1264 +20 10045653 . A . . END=10045654 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:71:42:0,71,1162 +20 10045655 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:93:43:0,93,1256 +20 10045656 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:62:42:0,62,1091 +20 10045657 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:34:42:0,34,1066 +20 10045658 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:15:42:0,15,1044 +20 10045659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:85:40:0,85,1142 +20 10045660 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:99:42:0,115,1230 +20 10045661 . T . . END=10045662 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:91:42:0,91,1198 +20 10045663 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:62:43:0,62,1193 +20 10045664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:99:42:0,117,1755 +20 10045665 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:88:41:0,88,1213 +20 10045666 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:71:41:0,71,1132 +20 10045667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:88:41:0,88,1206 +20 10045668 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:78:43:0,78,1247 +20 10045669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:61:44:0,61,1212 +20 10045670 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:82:44:0,82,1255 +20 10045671 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:91:44:0,91,1257 +20 10045672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:99:42:0,111,1286 +20 10045673 . T . . END=10045674 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:91:42:0,91,1269 +20 10045675 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:74:43:0,74,1224 +20 10045676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:94:42:0,94,1288 +20 10045677 . G . . END=10045678 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:74:40:0,74,1158 +20 10045679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:81:42:0,81,1230 +20 10045680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:96:43:0,96,1292 +20 10045681 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:69:43:0,69,1241 +20 10045682 . A . . END=10045683 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:94:43:0,94,1230 +20 10045684 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:99:44:0,120,1800 +20 10045685 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:89:41:0,89,1260 +20 10045686 . G . . END=10045688 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:42:0,99,1300 +20 10045689 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:77:46:0,77,1332 +20 10045690 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:45:0,102,1390 +20 10045691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:75:46:0,75,1303 +20 10045692 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:99:46:0,104,1411 +20 10045693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:90:46:0,90,1325 +20 10045694 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:99:46:0,120,1800 +20 10045695 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:98:44:0,98,1283 +20 10045696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:45:0,102,1322 +20 10045697 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:98:44:0,98,1285 +20 10045698 . C . . END=10045706 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:47:99:46:0,104,1330 +20 10045707 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:91:46:0,91,1309 +20 10045708 . A . . END=10045711 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:99:44:0,99,1267 +20 10045712 . A . . END=10045713 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:47:93:46:0,93,1343 +20 10045714 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:46:99:46:0,104,1361 +20 10045715 . T . . END=10045718 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:95:43:0,95,1282 +20 10045719 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:99:43:0,120,1800 +20 10045720 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:96:43:0,96,1324 +20 10045721 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:99:44:0,99,1356 +20 10045722 . T . . END=10045726 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:95:43:0,95,1249 +20 10045727 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:52:44:0,52,1204 +20 10045728 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:97:44:0,97,1320 +20 10045729 . T . . END=10045730 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:45:0,101,1385 +20 10045731 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:91:45:0,91,1359 +20 10045732 . C . . END=10045734 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:43:0,102,1331 +20 10045735 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:71:45:0,71,1278 +20 10045736 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:99:44:0,99,1284 +20 10045737 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:89:45:0,89,1331 +20 10045738 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:99:42:0,113,1296 +20 10045739 . T . . END=10045740 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:92:42:0,92,1257 +20 10045741 . T . . END=10045742 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:99:42:0,120,1800 +20 10045743 . A . . END=10045744 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:42:93:42:0,93,1229 +20 10045745 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:99:41:0,120,1800 +20 10045746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:90:41:0,90,1240 +20 10045747 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:87:40:0,87,1214 +20 10045748 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:91:41:0,91,1263 +20 10045749 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:99:40:0,114,1710 +20 10045750 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:92:40:0,92,1170 +20 10045751 . G . . END=10045752 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:86:40:0,86,1185 +20 10045753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:99:40:0,114,1710 +20 10045754 . C . . END=10045755 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:67:39:0,67,1159 +20 10045756 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:87:40:0,87,1187 +20 10045757 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:91:41:0,91,1289 +20 10045758 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:99:41:0,105,1575 +20 10045759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:76:40:0,76,1150 +20 10045760 . C . . END=10045767 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:83:39:0,83,1169 +20 10045768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:38:64:38:0,64,1124 +20 10045769 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:38:79:38:0,79,1129 +20 10045770 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:99:39:0,99,1485 +20 10045771 . T . . END=10045773 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:84:39:0,84,1155 +20 10045774 . C . . END=10045804 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:41:99:36:0,103,1167 +20 10045805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:93:39:0,93,1154 +20 10045806 . A . . END=10045882 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:99:37:0,102,1167 +20 10045883 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:84:39:0,84,1149 +20 10045884 . T . . END=10045890 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:99:39:0,111,1665 +20 10045891 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:39:91:39:0,91,1141 +20 10045892 . T . . END=10045921 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:40:99:35:0,99,1120 +20 10045922 . G . . END=10045926 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:34:90:32:0,90,1350 +20 10045927 . G . . END=10045936 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:34:81:33:0,81,1023 +20 10045937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:32:63:32:0,63,889 +20 10045938 . C . . END=10045939 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:30:87:29:0,87,905 +20 10045940 . T . . END=10045955 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:32:90:31:0,90,968 +20 10045956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:34:84:34:0,84,1003 +20 10045957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:33:93:33:0,93,1395 +20 10045958 . A . . END=10045959 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:33:87:31:0,87,1305 +20 10045960 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:34:78:34:0,78,1170 +20 10045961 . C . . END=10045968 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:35:81:31:0,81,1215 +20 10045969 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:32:90:32:0,90,1350 +20 10045970 . A . . END=10045971 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:33:87:32:0,87,1305 +20 10045972 . A . . END=10045973 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:34:90:34:0,90,1350 +20 10045974 . G . . END=10045989 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:32:81:30:0,81,1215 +20 10045990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:33:74:33:0,74,998 +20 10045991 . T . . END=10045992 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:33:84:33:0,84,1260 +20 10045993 . A . . END=10046011 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:32:90:30:0,90,961 +20 10046012 . C . . END=10046021 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:31:84:31:0,84,1260 +20 10046022 . G . . END=10046042 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:32:90:31:0,90,982 +20 10046043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:33:85:33:0,85,988 +20 10046044 . A . . END=10046121 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:34:0,99,1110 +20 10046122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:91:45:0,91,1326 +20 10046123 . A . . END=10046126 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:99:43:0,120,1800 +20 10046127 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:45:90:45:0,90,1156 +20 10046128 . A . . END=10046146 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:47:99:44:0,102,1456 +20 10046147 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:93:44:0,93,1395 +20 10046148 . G . . END=10046151 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:44:81:42:0,81,1215 +20 10046152 . A . . END=10046153 GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:78:43:0,78,1170 +20 10046154 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:64:0,108,1620 ./.:43:60:43:0,60,900 +20 10046155 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:93:69:0,93,1395 ./.:43:60:43:0,60,900 +20 10046156 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:81:66:0,81,1215 ./.:43:60:43:0,60,900 +20 10046157 . G . . END=10046162 GT:DP:GQ:MIN_DP:PL ./.:65:72:64:0,72,1080 ./.:46:54:41:0,54,810 +20 10046163 . G . . . GT:DP:GQ:MIN_DP:PL ./.:65:72:64:0,72,1080 ./.:47:51:47:0,51,765 +20 10046164 . A . . END=10046167 GT:DP:GQ:MIN_DP:PL ./.:60:54:58:0,54,810 ./.:47:45:46:0,45,675 +20 10046168 . A . . END=10046170 GT:DP:GQ:MIN_DP:PL ./.:61:51:59:0,51,765 ./.:51:33:49:0,33,495 +20 10046171 . A . . END=10046172 GT:DP:GQ:MIN_DP:PL ./.:64:39:63:0,39,585 ./.:51:33:49:0,33,495 +20 10046173 . A . . END=10046174 GT:DP:GQ:MIN_DP:PL ./.:63:21:62:0,21,315 ./.:50:27:50:0,27,405 +20 10046175 . A . . END=10046176 GT:DP:GQ:MIN_DP:PL ./.:63:21:62:0,21,315 ./.:48:18:47:0,18,270 +20 10046177 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:15:60:0,15,225 ./.:50:15:50:0,15,225 +20 10046178 . AAGAAAGAAAG A, . . DP=111;ExcessHet=3.01;RAW_MQandDP=328345,111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046179 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046180 . G *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046181 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046182 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046183 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046184 . G *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046185 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046186 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046187 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046188 . G *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:0,50,0:50:99:2197,152,0,2197,152,2197:0,0,23,27 ./.:0,42,0:42:99:1864,127,0,1864,127,1864:0,0,26,16 +20 10046189 . A . . . GT:DP:GQ:MIN_DP:PL ./.:55:0:55:0,0,0 ./.:50:0:50:0,0,0 +20 10046190 . G . . END=10046197 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:48:99:45:0,100,1308 +20 10046198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:46:71:46:0,71,1310 +20 10046199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:99:45:0,100,1323 +20 10046200 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:43:94:43:0,94,1211 +20 10046201 . A . . END=10046202 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:82:43:0,82,1212 +20 10046203 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:99:45:0,100,1331 +20 10046204 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:96:44:0,96,1209 +20 10046205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:45:89:45:0,89,1297 +20 10046206 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:43:94:43:0,94,1237 +20 10046207 . A . . END=10046216 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:44:99:42:0,110,1221 +20 10046217 . G . . END=10046221 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:42:96:39:0,96,1440 +20 10046222 . A . . END=10046223 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:87:37:0,87,1305 +20 10046224 . A . . END=10046225 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:90:38:0,90,1350 +20 10046226 . A . . END=10046229 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:41:99:40:0,99,1485 +20 10046230 . A . . END=10046232 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:96:37:0,96,1132 +20 10046233 . A . . END=10046234 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,102,1530 +20 10046235 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:97:38:0,97,1099 +20 10046236 . A . . END=10046239 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:35:0,102,1530 +20 10046240 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:69:36:0,69,861 +20 10046241 . G . . END=10046245 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:90:36:0,90,1350 +20 10046246 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,99,1485 +20 10046247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:85:38:0,85,1066 +20 10046248 . A . . END=10046250 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:38:0,99,1485 +20 10046251 . G . . END=10046259 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:93:36:0,93,1084 +20 10046260 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046261 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:96:35:0,96,1440 +20 10046262 . A . . END=10046264 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046265 . G . . END=10046267 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:87:33:0,87,977 +20 10046268 . A . . END=10046269 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:93:36:0,93,1395 +20 10046270 . A . . END=10046277 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,99,1110 +20 10046278 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:84:37:0,84,1260 +20 10046279 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:71:35:0,71,923 +20 10046280 . A . . END=10046286 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:84:34:0,84,1072 +20 10046287 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:34:90:34:0,90,1350 +20 10046288 . A . . END=10046294 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:81:31:0,81,1215 +20 10046295 . G . . END=10046300 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:75:28:0,75,1125 +20 10046301 . A . . END=10046303 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:81:29:0,81,1215 +20 10046304 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:78:29:0,78,1170 +20 10046305 . A . . END=10046306 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:81:29:0,81,1215 +20 10046307 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:28:63:28:0,63,762 +20 10046308 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:27:47:27:0,47,676 +20 10046309 . A . . END=10046310 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:29:84:29:0,84,1260 +20 10046311 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:27:64:27:0,64,740 +20 10046312 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:85:32:0,85,981 +20 10046313 . A . . END=10046316 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:93:31:0,93,961 +20 10046317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:37:30:0,37,675 +20 10046318 . G . . END=10046323 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:84:29:0,84,787 +20 10046324 . A . . END=10046326 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:70:29:0,70,700 +20 10046327 . A . . END=10046329 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:81:30:0,81,1215 +20 10046330 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:30:77:30:0,77,790 +20 10046331 . A . . END=10046334 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:84:30:0,84,1260 +20 10046335 . A . . END=10046336 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:90:31:0,90,1350 +20 10046337 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:32:80:32:0,80,911 +20 10046338 . A . . END=10046340 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:31:90:31:0,90,864 +20 10046341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:33:71:33:0,71,799 +20 10046342 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046343 . G . . END=10046344 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:34:83:33:0,83,976 +20 10046345 . A . . END=10046346 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:34:0,99,1485 +20 10046347 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:80:35:0,80,988 +20 10046348 . G . . END=10046393 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:40:99:36:0,100,1064 +20 10046394 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:87:38:0,87,1082 +20 10046395 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:99:39:0,108,1620 +20 10046396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:39:86:39:0,86,1197 +20 10046397 . A . . END=10046403 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,99,1485 +20 10046404 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:97:38:0,97,1168 +20 10046405 . G . . END=10046411 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:37:0,99,1485 +20 10046412 . A . . END=10046420 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:92:36:0,92,1053 +20 10046421 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:37:99:37:0,99,1485 +20 10046422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:92:36:0,92,1036 +20 10046423 . A . . END=10046430 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:99:35:0,99,1485 +20 10046431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:35:90:35:0,90,1054 +20 10046432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:36:82:36:0,82,1046 +20 10046433 . A . . END=10046435 GT:DP:GQ:MIN_DP:PL ./.:67:99:52:0,108,1620 ./.:38:99:37:0,105,1155 +20 10046436 . A . . END=10046437 GT:DP:GQ:MIN_DP:PL ./.:68:96:65:0,96,1440 ./.:38:99:37:0,105,1155 +20 10046438 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:96:65:0,96,1440 ./.:38:96:38:0,96,1184 +20 10046439 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:66:0,99,1485 ./.:40:99:38:0,108,1620 +20 10046440 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:93:66:0,93,1395 ./.:40:99:38:0,108,1620 +20 10046441 . C . . END=10046443 GT:DP:GQ:MIN_DP:PL ./.:62:87:54:0,87,1305 ./.:40:99:38:0,108,1620 +20 10046444 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:54:39:0,54,1348 ./.:40:99:38:0,108,1620 +20 10046445 . T . . END=10046448 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:40:99:38:0,108,1620 +20 10046449 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:39:87:39:0,87,1145 +20 10046450 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:72:34:0,72,1251 ./.:38:99:37:0,105,1575 +20 10046451 . C . . END=10046453 GT:DP:GQ:MIN_DP:PL ./.:33:84:32:0,84,1260 ./.:38:99:37:0,105,1575 +20 10046454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:87:31:0,87,1305 ./.:38:99:37:0,105,1575 +20 10046456 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046457 . C . . END=10046458 GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:38:99:37:0,105,1575 +20 10046459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:38:99:37:0,105,1575 +20 10046460 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:39:76:39:0,76,1134 +20 10046461 . C . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:42:99:39:0,99,1128 +20 10046462 . C . . END=10046475 GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:42:99:39:0,99,1128 +20 10046476 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:43:97:43:0,97,1215 +20 10046477 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:36:0,99,1485 ./.:45:99:39:0,108,1306 +20 10046478 . T . . END=10046479 GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:45:99:39:0,108,1306 +20 10046480 . C . . END=10046483 GT:DP:GQ:MIN_DP:PL ./.:39:99:39:0,99,1485 ./.:45:99:39:0,108,1306 +20 10046484 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:96:38:0,96,1440 ./.:45:99:39:0,108,1306 +20 10046485 . G . . END=10046491 GT:DP:GQ:MIN_DP:PL ./.:39:99:36:0,100,1440 ./.:45:99:39:0,108,1306 +20 10046492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:82:38:0,82,1478 ./.:45:99:39:0,108,1306 +20 10046493 . T . . END=10046500 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:45:99:39:0,108,1306 +20 10046501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:40:96:40:0,96,1181 +20 10046502 . T . . END=10046512 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:39:99:37:0,104,1121 +20 10046513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:36:97:36:0,97,1119 +20 10046514 . A . . END=10046516 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:99:36:0,108,1023 +20 10046517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:90:37:0,90,1121 +20 10046518 . G . . END=10046530 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:39:99:37:0,105,1575 +20 10046531 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:38:84:38:0,84,1128 +20 10046532 . A . . END=10046536 GT:DP:GQ:MIN_DP:PL ./.:48:99:38:0,108,1620 ./.:37:99:35:0,99,1485 +20 10046537 . A G, . . BaseQRankSum=-3.909e+00;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.395;RAW_MQandDP=169333,57;ReadPosRankSum=0.412 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:28,29,0:57:99:.:848,0,902,932,988,1920:13,15,10,19 ./.:.:37:99:35:0,99,1485,99,1485,1485 +20 10046538 . T . . END=10046547 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:99:35:0,99,1485 +20 10046548 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:35:96:35:0,96,1440 +20 10046549 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:99:37:0,99,1485 +20 10046550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:37:96:37:0,96,1070 +20 10046551 . C . . END=10046557 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:36:99:34:0,99,1485 +20 10046558 . T . . END=10046569 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:34:90:32:0,90,1350 +20 10046570 . T . . END=10046575 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:29:0,81,1215 +20 10046576 . C . . END=10046578 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:78:31:0,78,1170 +20 10046579 . A . . END=10046590 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:32:81:30:0,81,910 +20 10046591 . T . . END=10046592 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:33:90:32:0,90,1350 +20 10046593 . C . . END=10046598 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:30:0,81,1215 +20 10046599 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:30:79:30:0,79,913 +20 10046600 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:31:0,81,1215 +20 10046601 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:30:55:30:0,55,871 +20 10046602 . C . . END=10046620 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:72:28:0,72,852 +20 10046621 . T . . END=10046630 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:81:30:0,81,1215 +20 10046631 . A . . END=10046632 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:71:28:0,71,858 +20 10046633 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:29:87:29:0,87,927 +20 10046634 . A . . END=10046635 GT:DP:GQ:MIN_DP:PL ./.:57:99:46:0,99,1620 ./.:31:93:31:0,93,972 +20 10046636 . T . . . GT:DP:GQ:MIN_DP:PL ./.:44:92:44:0,92,1722 ./.:31:64:31:0,64,943 +20 10046637 . T . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:44:0,104,1719 ./.:31:90:30:0,90,952 +20 10046638 . C . . . GT:DP:GQ:MIN_DP:PL ./.:45:95:45:0,95,1751 ./.:31:90:30:0,90,952 +20 10046639 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:30:0,90,952 +20 10046640 . T . . END=10046641 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:62:31:0,62,939 +20 10046642 . A . . END=10046643 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10046644 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046645 . T . . END=10046646 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:87:33:0,87,1051 +20 10046647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10046648 . C . . END=10046652 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046653 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:36:0,90,995 +20 10046654 . C . . END=10046656 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:36:0,105,1575 +20 10046657 . C . . END=10046658 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:93:37:0,93,1160 +20 10046659 . G . . END=10046672 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,99,1185 +20 10046673 . C . . END=10046674 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:89:40:0,89,1179 +20 10046675 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:72:40:0,72,1157 +20 10046676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:87:40:0,87,1218 +20 10046677 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:52:39:0,52,1127 +20 10046678 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:83:39:0,83,1196 +20 10046679 . T . . END=10046681 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,114,1263 +20 10046682 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:85:39:0,85,1222 +20 10046683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,114,1710 +20 10046684 . C . . END=10046685 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:81:38:0,81,1116 +20 10046686 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:58:40:0,58,1166 +20 10046687 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:88:40:0,88,1269 +20 10046688 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,114,1710 +20 10046689 . G . . END=10046691 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1176 +20 10046692 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:71:40:0,71,1154 +20 10046693 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,111,1665 +20 10046694 . C . . END=10046695 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:87:40:0,87,1206 +20 10046696 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:72:39:0,72,1141 +20 10046697 . C . . END=10046698 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:81:38:0,81,1137 +20 10046699 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:79:41:0,79,1195 +20 10046700 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:81:38:0,81,1167 +20 10046701 . C . . END=10046762 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:37:0,105,1164 +20 10046763 . T . . END=10046764 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:40:0,96,1440 +20 10046765 . C . . END=10046819 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:37:0,99,1128 +20 10046820 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:90:41:0,90,1162 +20 10046821 . A . . END=10046826 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,103,1090 +20 10046827 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:72:39:0,72,1026 +20 10046828 . T C, . . DP=75;ExcessHet=3.01;RAW_MQandDP=115200,32 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:0,32,0:32:96:.:993,96,0,993,96,993:0,0,17,15 +20 10046829 . T . . END=10046841 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,102,1098 +20 10046842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:83:37:0,83,1067 +20 10046843 . T . . END=10046850 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:93:35:0,93,1395 +20 10046851 . A . . END=10046852 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,102,1126 +20 10046853 . T . . END=10046856 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:36:0,96,1440 +20 10046857 . G . . END=10046858 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10046859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:96:36:0,96,1048 +20 10046860 . A . . END=10046862 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,99,1485 +20 10046863 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:96:39:0,96,1440 +20 10046864 . T . . END=10046874 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10046875 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:84:34:0,84,961 +20 10046876 . T . . END=10046880 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,961 +20 10046881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:89:34:0,89,934 +20 10046882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10046883 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:80:33:0,80,979 +20 10046884 . C . . END=10046907 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:34:0,99,953 +20 10046908 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:98:37:0,98,1128 +20 10046909 . T . . END=10046911 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,102,1530 +20 10046912 . T . . END=10046915 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:36:0,96,1440 +20 10046916 . C . . END=10046917 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1530 +20 10046918 . G . . END=10046919 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:37:0,96,1084 +20 10046920 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:62:37:0,62,1033 +20 10046921 . A . . END=10046922 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:96:37:0,96,1044 +20 10046923 . C . . END=10046946 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:35:0,99,1123 +20 10046947 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:98:39:0,98,1151 +20 10046948 . T . . END=10046989 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:35:0,100,1097 +20 10046990 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:90:41:0,90,1185 +20 10046991 . A . . END=10047004 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:35:0,99,1485 +20 10047005 . A . . END=10047011 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:33:0,90,1002 +20 10047012 . A . . END=10047019 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:33:0,99,954 +20 10047020 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:86:35:0,86,1042 +20 10047021 . T . . END=10047023 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,102,1530 +20 10047024 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:93:36:0,93,1076 +20 10047025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,102,1530 +20 10047026 . C . . END=10047027 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:92:35:0,92,1066 +20 10047028 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:87:34:0,87,990 +20 10047029 . T . . END=10047037 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:92:34:0,92,1033 +20 10047038 . T C, . . BaseQRankSum=-1.461e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.254 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:11,20,0:31:99:.:553,0,276,586,336,922:6,5,12,8 +20 10047039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10047040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:67:34:0,67,999 +20 10047042 . A . . END=10047053 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047054 . T . . END=10047062 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:33:0,90,1075 +20 10047063 . A . . END=10047069 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:81:34:0,81,1215 +20 10047070 . G . . END=10047072 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:35:0,90,1350 +20 10047073 . T . . END=10047077 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047078 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:69:34:0,69,1066 +20 10047079 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047080 . A . . END=10047106 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:90:32:0,90,1110 +20 10047107 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:72:34:0,72,934 +20 10047108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:69:32:0,69,867 +20 10047109 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:80:32:0,80,901 +20 10047110 . C . . END=10047111 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:34:0,99,1485 +20 10047112 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:91:34:0,91,1027 +20 10047113 . T . . END=10047119 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,995 +20 10047120 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:89:36:0,89,1029 +20 10047121 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:94:35:0,94,1047 +20 10047122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:67:34:0,67,914 +20 10047123 . A . . END=10047125 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10047126 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:86:35:0,86,900 +20 10047127 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:93:35:0,93,945 +20 10047128 . T . . END=10047132 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:99:33:0,99,1002 +20 10047133 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:96:32:0,96,1014 +20 10047134 . C . . END=10047136 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,99,1485 +20 10047137 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:80:35:0,80,1081 +20 10047138 . C . . END=10047139 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:91:32:0,91,983 +20 10047140 . T . . END=10047141 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,102,1021 +20 10047142 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:69:34:0,69,951 +20 10047143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,105,1074 +20 10047144 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:92:36:0,92,1046 +20 10047145 . C . . END=10047146 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,105,1017 +20 10047147 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:89:35:0,89,1033 +20 10047148 . C . . END=10047168 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:34:0,99,1065 +20 10047169 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:95:37:0,95,1083 +20 10047170 . C . . END=10047216 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:36:0,99,1149 +20 10047217 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:98:43:0,98,1236 +20 10047218 . T . . END=10047224 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:41:0,103,1232 +20 10047225 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:98:40:0,98,1212 +20 10047226 . A . . END=10047266 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,100,1127 +20 10047267 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:87:41:0,87,1168 +20 10047268 . C . . END=10047274 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,111,1665 +20 10047275 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:95:38:0,95,1129 +20 10047276 . T . . END=10047286 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,101,1142 +20 10047287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:39:0,93,1127 +20 10047288 . C . . END=10047291 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:40:0,111,1665 +20 10047292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:87:42:0,87,1146 +20 10047293 . T . . END=10047340 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:42:0,99,1294 +20 10047341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:83:42:0,83,1157 +20 10047342 . T . . END=10047403 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,100,1185 +20 10047404 . T . . END=10047406 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:92:41:0,92,1255 +20 10047407 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:88:41:0,88,1226 +20 10047408 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:41:0,111,1665 +20 10047409 . A . . END=10047414 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:82:39:0,82,1163 +20 10047415 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:39:0,111,1665 +20 10047416 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1204 +20 10047417 . T . . END=10047422 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:38:0,111,1665 +20 10047423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:39:0,93,1199 +20 10047424 . C . . END=10047434 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,103,1186 +20 10047435 . G A, . . BaseQRankSum=2.75;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=-5.400e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:20,21,0:41:99:.:529,0,417,588,479,1067:13,7,9,12 +20 10047436 . C . . END=10048125 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:51:99:39:0,99,1200 +20 10048126 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:97:42:0,97,1268 +20 10048127 . T . . END=10048134 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:34:0,99,1485 +20 10048135 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:35:0,90,1071 +20 10048136 . C . . END=10048153 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,100,1163 +20 10048154 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:93:37:0,93,1138 +20 10048155 . A . . END=10048159 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1193 +20 10048160 . T . . END=10048169 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:91:35:0,91,1162 +20 10048170 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:84:35:0,84,1085 +20 10048171 . A . . END=10048172 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:93:34:0,93,1395 +20 10048173 . A . . END=10048174 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,99,1485 +20 10048175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:85:37:0,85,1174 +20 10048176 . T . . END=10048187 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,102,1530 +20 10048188 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:98:38:0,98,1207 +20 10048189 . T . . END=10048191 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,108,1620 +20 10048192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:91:36:0,91,1058 +20 10048193 . C . . END=10048223 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,102,1194 +20 10048224 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:94:37:0,94,1138 +20 10048225 . C . . END=10048301 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:37:0,101,1181 +20 10048302 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:93:40:0,93,1203 +20 10048303 . A . . END=10048310 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,108,1166 +20 10048311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:96:39:0,96,1213 +20 10048312 . G . . END=10048314 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:40:0,108,1620 +20 10048315 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:41:0,96,1209 +20 10048316 . A . . END=10048327 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:38:0,99,1485 +20 10048328 . C . . END=10048329 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:94:38:0,94,1057 +20 10048330 . G . . END=10048331 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,105,1575 +20 10048332 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:79:36:0,79,1078 +20 10048333 . T . . END=10048334 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:35:0,99,1485 +20 10048335 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:88:35:0,88,1045 +20 10048336 . T . . END=10048392 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:99:36:0,99,1243 +20 10048393 . C G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=158400,44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:78:99:43:.:.:0,101,1614,101,1614,1614 ./.:0,43,0:43:99:.:0|1:10048393_C_G:1609,132,0,1609,132,1609:0,0,23,20 +20 10048394 . G . . END=10048399 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:47:0,120,1800 +20 10048400 . C T, . . BaseQRankSum=2.20;ClippingRankSum=0.00;DP=92;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=176400,49;ReadPosRankSum=1.71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:78:99:43:.:.:0,101,1614,101,1614,1614 ./.:24,21,0:45:99:.:0|1:10048393_C_G:467,0,468,537,530,1067:11,13,13,8 +20 10048401 . G . . END=10048541 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:38:0,102,1362 +20 10048542 . C . . END=10048555 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:93:35:0,93,1395 +20 10048556 . T . . END=10048558 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10048559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:96:33:0,96,1440 +20 10048560 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:37:0,102,1530 +20 10048561 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:78:38:0,78,1100 +20 10048562 . T . . END=10048577 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,99,1181 +20 10048578 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:88:39:0,88,1094 +20 10048579 . A . . END=10048594 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:39:0,100,1209 +20 10048595 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:98:44:0,98,1207 +20 10048596 . T . . END=10048602 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:46:99:44:0,120,1800 +20 10048603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:83:44:0,83,1209 +20 10048604 . C . . END=10048607 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:45:99:43:0,120,1800 +20 10048608 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:47:95:47:0,95,1276 +20 10048609 . T . . END=10048694 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:40:0,100,1169 +20 10048695 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:87:42:0,87,1232 +20 10048696 . C . . END=10048699 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:43:0,102,1530 +20 10048700 . A . . END=10048701 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:96:43:0,96,1440 +20 10048702 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:89:43:0,89,1279 +20 10048703 . T . . END=10048707 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:93:38:0,93,1395 +20 10048708 . A . . END=10048711 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:35:0,99,1485 +20 10048712 . A . . END=10048715 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10048716 . T . . END=10048717 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10048718 . A . . END=10048723 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:90:34:0,90,1003 +20 10048724 . T . . END=10048725 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:34:0,99,1485 +20 10048726 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:87:35:0,87,1305 +20 10048727 . T . . END=10048729 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:90:36:0,90,1350 +20 10048730 . A . . END=10048882 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:35:0,99,1043 +20 10048883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:96:41:0,96,1217 +20 10048884 . T . . END=10048958 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:35:0,99,1060 +20 10048959 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:74:36:0,74,1064 +20 10048960 . G . . END=10048964 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:38:0,102,1530 +20 10048965 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:92:37:0,92,1078 +20 10048966 . T . . END=10048983 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:33:0,99,1009 +20 10048984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:84:39:0,84,1120 +20 10048985 . G . . END=10048987 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,111,1665 +20 10048988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:97:38:0,97,1141 +20 10048989 . A . . END=10048994 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:37:0,103,1166 +20 10048995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:87:39:0,87,1171 +20 10048996 . C . . END=10048997 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:39:99:38:0,111,1665 +20 10048998 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:89:38:0,89,1130 +20 10048999 . A . . END=10049005 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:37:0,102,1153 +20 10049006 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:94:37:0,94,1114 +20 10049007 . G . . END=10049011 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:34:0,102,1049 +20 10049012 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:97:36:0,97,1103 +20 10049013 . A . . END=10049015 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:33:0,99,1059 +20 10049016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:34:0,96,1440 +20 10049017 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10049018 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:76:35:0,76,1041 +20 10049019 . T . . END=10049022 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:99:36:0,99,1485 +20 10049023 . G . . END=10049024 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:96:36:0,96,1440 +20 10049025 . C . . END=10049026 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:87:36:0,87,1305 +20 10049027 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:77:35:0,77,1060 +20 10049028 . T . . END=10049030 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:84:35:0,84,1260 +20 10049031 . T . . END=10049034 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:75:33:0,75,1125 +20 10049035 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:32:81:32:0,81,1215 +20 10049036 . T . . END=10049053 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:28:72:26:0,72,1080 +20 10049054 . C . . END=10049058 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:81:29:0,81,1215 +20 10049059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:62:30:0,62,902 +20 10049060 . G . . END=10049066 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049067 . T . . END=10049070 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:30:0,90,1017 +20 10049071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:64:30:0,64,960 +20 10049072 . A . . END=10049074 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049075 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:31:0,90,1350 +20 10049076 . A . . END=10049078 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:87:31:0,87,1305 +20 10049079 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:74:30:0,74,945 +20 10049080 . A . . END=10049081 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:30:0,81,1215 +20 10049082 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:70:30:0,70,948 +20 10049083 . T . . END=10049106 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:29:0,81,1215 +20 10049107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:90:30:0,90,972 +20 10049108 . C . . END=10049119 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:81:30:0,81,1215 +20 10049120 . A G, . . BaseQRankSum=0.571;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=-1.548e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:43:0,101,1614,101,1614,1614 ./.:11,22,0:33:99:.:567,0,223,599,288,888:7,4,13,9 +20 10049121 . G . . END=10049123 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:30:87:30:0,87,1305 +20 10049124 . C . . END=10049126 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:31:90:31:0,90,977 +20 10049127 . G . . END=10049128 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:33:99:33:0,99,1028 +20 10049129 . G . . END=10049130 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:34:96:33:0,96,1440 +20 10049131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:35:99:35:0,99,1485 +20 10049132 . T . . END=10049133 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:91:35:0,91,1081 +20 10049134 . C . . END=10049137 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:37:99:36:0,105,1575 +20 10049138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:36:84:36:0,84,1049 +20 10049139 . G . . END=10049167 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:99:34:0,102,1069 +20 10049168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:38:88:38:0,88,1145 +20 10049169 . G . . END=10049404 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:48:99:39:0,110,1306 +20 10049405 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:47:97:47:0,97,1378 +20 10049406 . C . . END=10049516 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:99:39:0,100,1197 +20 10049517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:94:42:0,94,1275 +20 10049518 . A . . END=10049528 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:99:39:0,100,1160 +20 10049529 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:40:93:40:0,93,1242 +20 10049530 . G . . END=10049538 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:42:99:41:0,106,1219 +20 10049539 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:94:43:0,94,1255 +20 10049540 . A . . END=10049541 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:43:99:42:0,109,1252 +20 10049542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:41:93:41:0,93,1220 +20 10049543 . T . . END=10049834 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:51:99:40:0,104,1115 +20 10049835 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:44:89:44:0,89,1278 +20 10049836 . A . . END=10050160 GT:DP:GQ:MIN_DP:PL ./.:78:99:43:0,101,1614 ./.:49:99:39:0,99,1204 +20 10050161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:75:68:0,75,2271 ./.:49:99:39:0,99,1204 +20 10050162 . C . . END=10050254 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:49:99:39:0,99,1204 +20 10050255 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:94:39:0,94,1149 +20 10050256 . A . . END=10050261 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:37:0,99,1485 +20 10050262 . C . . END=10050268 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:90:34:0,90,1099 +20 10050269 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10050270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10050271 . A . . END=10050275 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:36:0,99,1485 +20 10050276 . G . . END=10050278 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:36:0,93,1395 +20 10050279 . G . . END=10050298 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:34:0,102,1062 +20 10050299 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:96:36:0,96,1440 +20 10050300 . C . . END=10050308 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:99:36:0,99,1485 +20 10050309 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:95:37:0,95,995 +20 10050310 . G . . END=10050321 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:99:36:0,99,1485 +20 10050322 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:81:36:0,81,1075 +20 10050323 . A . . END=10050325 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050326 . A . . END=10050335 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:34:0,93,1111 +20 10050336 . T . . END=10050340 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:33:0,99,1039 +20 10050341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:88:33:0,88,1022 +20 10050342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:99:33:0,99,1045 +20 10050343 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:80:35:0,80,1056 +20 10050344 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050345 . G . . END=10050346 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:96:36:0,96,1440 +20 10050347 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:88:37:0,88,1046 +20 10050348 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:96:37:0,96,1440 +20 10050349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:83:37:0,83,1091 +20 10050350 . A . . END=10050351 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:92:35:0,92,1081 +20 10050352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:83:37:0,83,1096 +20 10050353 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:96:35:0,96,1440 +20 10050354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:35:0,86,1028 +20 10050355 . T . . END=10050356 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:93:37:0,93,1093 +20 10050357 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:84:36:0,84,1064 +20 10050358 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:90:34:0,90,1350 +20 10050359 . C . . END=10050360 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:34:0,86,1041 +20 10050361 . C . . END=10050368 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:90:31:0,90,1350 +20 10050369 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:29:87:29:0,87,962 +20 10050370 . T . . END=10050371 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:93:31:0,93,1007 +20 10050372 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:30:89:30:0,89,885 +20 10050373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:76:31:0,76,907 +20 10050374 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:93:31:0,93,987 +20 10050375 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:30:68:30:0,68,839 +20 10050376 . C . . END=10050379 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:30:0,90,951 +20 10050380 . C . . END=10050381 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:84:31:0,84,1260 +20 10050382 . A . . END=10050383 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:73:31:0,73,902 +20 10050384 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:87:31:0,87,1305 +20 10050385 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:78:31:0,78,899 +20 10050386 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:90:32:0,90,1350 +20 10050387 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:76:32:0,76,946 +20 10050388 . T . . END=10050389 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:96:32:0,96,1046 +20 10050390 . C . . END=10050394 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:34:0,99,1059 +20 10050395 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:87:34:0,87,1016 +20 10050396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:99:34:0,102,1089 +20 10050397 . C . . END=10050399 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:96:34:0,96,1440 +20 10050400 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:99:35:0,99,1485 +20 10050401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:34:72:34:0,72,1022 +20 10050402 . C . . END=10050403 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,99,1485 +20 10050404 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:92:36:0,92,1065 +20 10050405 . T . . END=10050409 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:36:0,102,1530 +20 10050410 . C . . END=10050413 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:93:35:0,93,1177 +20 10050414 . C . . END=10050417 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:38:0,99,1485 +20 10050418 . A . . END=10050422 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:93:36:0,93,1138 +20 10050423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:75:36:0,75,1100 +20 10050424 . C . . END=10050429 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:90:33:0,90,1004 +20 10050430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:77:31:0,77,901 +20 10050431 . A . . END=10050432 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:31:0,90,1350 +20 10050433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:29:87:29:0,87,899 +20 10050434 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:31:90:31:0,90,1350 +20 10050435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:80:32:0,80,968 +20 10050436 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:32:93:32:0,93,1395 +20 10050437 . T . . END=10050459 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:36:99:34:0,99,1046 +20 10050460 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:33:98:33:0,98,1035 +20 10050461 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:99:35:0,102,1530 +20 10050462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:35:86:35:0,86,1053 +20 10050463 . C . . END=10050627 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:99:34:0,99,1079 +20 10050628 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:42:92:42:0,92,1221 +20 10050629 . T . . END=10050666 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:43:99:38:0,102,1264 +20 10050667 . C T, . . DP=93;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:78:99:52:0,120,1800,120,1800,1800 ./.:0,38,0:38:99:.:1185,114,0,1185,114,1185:0,0,20,18 +20 10050668 . C . . END=10050672 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:40:99:37:0,108,1620 +20 10050673 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:81:38:0,81,1146 +20 10050674 . T . . END=10050704 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:36:0,101,1124 +20 10050705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:91:38:0,91,1206 +20 10050706 . T . . END=10050713 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:39:99:38:0,111,1665 +20 10050714 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:94:41:0,94,1250 +20 10050715 . T . . END=10050735 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:40:99:39:0,100,1161 +20 10050736 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:41:92:41:0,92,1193 +20 10050737 . C . . END=10050817 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:43:99:38:0,104,1173 +20 10050818 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:37:95:37:0,95,1094 +20 10050819 . C . . END=10050827 GT:DP:GQ:MIN_DP:PL ./.:78:99:52:0,120,1800 ./.:38:99:37:0,108,1162 +20 10050828 . T C, . . BaseQRankSum=-2.704e+00;ClippingRankSum=0.00;DP=124;ExcessHet=3.01;MQRankSum=0.892;RAW_MQandDP=443641,124;ReadPosRankSum=0.073 GT:AD:DP:GQ:PL:SB ./.:49,37,0:86:99:1256,0,1768,1403,1879,3282:28,21,18,19 ./.:0,36,0:36:99:1155,108,0,1155,108,1155:0,0,18,18 +20 10050829 . T . . END=10050888 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:38:0,99,1182 +20 10050889 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:86:39:0,86,1145 +20 10050890 . A . . END=10050926 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:40:99:37:0,102,1112 +20 10050927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:97:37:0,97,1104 +20 10050928 . T . . END=10050950 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:37:0,104,1177 +20 10050951 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:82:42:0,82,1145 +20 10050952 . T . . END=10051015 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:38:0,99,1144 +20 10051016 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:96:38:0,96,1118 +20 10051017 . G . . END=10051022 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:37:0,102,1530 +20 10051023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:84:39:0,84,1075 +20 10051024 . G . . END=10051038 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:40:99:37:0,99,1485 +20 10051039 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:88:35:0,88,1025 +20 10051040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:38:0,99,1485 +20 10051041 . T . . END=10051042 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:93:37:0,93,1395 +20 10051043 . C . . END=10051044 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:99:38:0,99,1485 +20 10051045 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:96:39:0,96,1440 +20 10051046 . A . . END=10051055 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:35:0,99,1485 +20 10051056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:34:0,90,999 +20 10051057 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:86:35:0,86,986 +20 10051058 . G . . END=10051059 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:99:33:0,99,976 +20 10051060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:68:34:0,68,966 +20 10051061 . G . . END=10051062 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:70:35:0,70,972 +20 10051063 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:93:35:0,93,1395 +20 10051064 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:99:37:0,99,1485 +20 10051065 . T . . END=10051071 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:93:36:0,93,1395 +20 10051072 . A . . END=10051075 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:36:99:35:0,99,1485 +20 10051076 . G . . END=10051082 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:34:0,90,1350 +20 10051083 . T . . END=10051091 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:84:31:0,84,1260 +20 10051092 . G . . END=10051093 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:90:31:0,90,1350 +20 10051094 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:29:87:29:0,87,906 +20 10051095 . C . . END=10051097 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:90:30:0,90,942 +20 10051098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:80:32:0,80,960 +20 10051099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:76:31:0,76,928 +20 10051100 . T . . END=10051106 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:93:32:0,93,1395 +20 10051107 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:84:33:0,84,1023 +20 10051108 . A . . END=10051111 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:99:34:0,99,1485 +20 10051112 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:85:34:0,85,1062 +20 10051113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:96:34:0,96,1440 +20 10051114 . A . . END=10051117 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:99:33:0,99,1023 +20 10051118 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:87:34:0,87,1013 +20 10051119 . A . . END=10051121 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:99:34:0,99,1485 +20 10051122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:96:34:0,96,1440 +20 10051123 . G . . END=10051134 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:36:99:33:0,99,1042 +20 10051135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:98:37:0,98,1130 +20 10051136 . A . . END=10051157 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:39:99:38:0,100,1188 +20 10051158 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:92:42:0,92,1274 +20 10051159 . C . . END=10051198 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:41:99:37:0,100,1086 +20 10051199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:64:42:0,64,1173 +20 10051200 . A . . END=10051212 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:46:99:44:0,113,1298 +20 10051213 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:47:94:47:0,94,1284 +20 10051214 . G . . END=10051330 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:44:99:39:0,106,1095 +20 10051331 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:42:72:42:0,72,1086 +20 10051332 . A . . END=10051366 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:34:0,102,1062 +20 10051367 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:82:37:0,82,1137 +20 10051368 . T . . END=10051375 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:37:99:37:0,99,1118 +20 10051376 . A G, . . BaseQRankSum=-3.580e-01;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-1.189e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:40:0,99,1485,99,1485,1485 ./.:18,20,0:38:99:.:514,0,430,567,490,1057:9,9,7,13 +20 10051377 . C . . END=10051378 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:38:99:38:0,102,1530 +20 10051379 . A . . END=10051392 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:35:93:32:0,93,1395 +20 10051393 . T . . END=10051394 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:87:33:0,87,930 +20 10051395 . C . . END=10051401 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:93:31:0,93,972 +20 10051402 . T . . END=10051413 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:81:30:0,81,1215 +20 10051414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:78:31:0,78,1170 +20 10051415 . G . . END=10051418 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:84:32:0,84,1260 +20 10051419 . C . . END=10051420 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:34:90:33:0,90,1350 +20 10051421 . G . . END=10051432 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:87:30:0,87,1305 +20 10051433 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:90:30:0,90,968 +20 10051434 . C . . END=10051438 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:81:30:0,81,1215 +20 10051439 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:30:78:30:0,78,887 +20 10051440 . C . . END=10051442 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:31:81:30:0,81,1215 +20 10051443 . T . . END=10051445 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:33:90:32:0,90,1350 +20 10051446 . C . . END=10051447 GT:DP:GQ:MIN_DP:PL ./.:68:99:40:0,99,1485 ./.:32:81:31:0,81,1215 +20 10051448 . T C, . . BaseQRankSum=-5.010e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=-1.404e+00;RAW_MQandDP=359451,102;ReadPosRankSum=-5.490e-01 GT:AD:DP:GQ:PL:SB ./.:35,35,0:70:99:1163,0,1150,1268,1255,2522:27,8,23,12 ./.:0,31,0:31:93:990,93,0,990,93,990:0,0,19,12 +20 10051449 . T . . END=10051452 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:81:31:0,81,1215 +20 10051453 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:79:32:0,79,949 +20 10051454 . C . . END=10051459 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:84:28:0,84,879 +20 10051460 . T . . END=10051463 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:29:76:29:0,76,858 +20 10051464 . C . . END=10051465 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:81:30:0,81,1215 +20 10051466 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:78:31:0,78,1170 +20 10051467 . A . . END=10051477 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:80:30:0,80,956 +20 10051478 . G . . END=10051479 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:90:32:0,90,1350 +20 10051480 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:30:33:0,30,880 +20 10051481 . C . . END=10051483 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:34:90:33:0,90,1350 +20 10051484 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:74:32:0,74,965 +20 10051485 . T . . END=10051486 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:93:32:0,93,1395 +20 10051487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:85:32:0,85,986 +20 10051488 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:79:32:0,79,959 +20 10051489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:81:32:0,81,980 +20 10051490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:93:32:0,93,1395 +20 10051491 . A . . END=10051492 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:31:87:31:0,87,1305 +20 10051493 . A . . END=10051505 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:90:31:0,90,1047 +20 10051506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:72:32:0,72,956 +20 10051507 . G . . END=10051510 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:90:31:0,90,951 +20 10051511 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:85:32:0,85,979 +20 10051512 . G . . END=10051518 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:93:31:0,93,970 +20 10051519 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:99:33:0,99,1016 +20 10051520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:33:88:33:0,88,1010 +20 10051521 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:32:96:32:0,96,940 +20 10051522 . A . . END=10051594 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:43:99:34:0,100,1078 +20 10051595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:88:44:0,88,1279 +20 10051596 . C . . END=10051694 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:46:99:44:0,120,1307 +20 10051695 . G A, . . BaseQRankSum=3.95;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=165600,46;ReadPosRankSum=-2.980e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:82:99:55:0,114,1800,114,1800,1800 ./.:21,25,0:46:99:.:667,0,425,729,500,1229:8,13,14,11 +20 10051696 . T . . END=10051744 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:42:99:38:0,105,1299 +20 10051745 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:90:35:0,90,1018 +20 10051746 . C . . END=10051750 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,102,1530 +20 10051751 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:94:36:0,94,1035 +20 10051752 . A . . END=10051760 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:99:37:0,99,1485 +20 10051761 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1395 +20 10051762 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:89:36:0,89,949 +20 10051763 . C . . END=10051765 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:93:33:0,93,1395 +20 10051766 . A . . END=10051982 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:47:99:36:0,99,1156 +20 10051983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:75:37:0,75,1079 +20 10051984 . T . . END=10052271 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:43:99:36:0,100,1147 +20 10052272 . C . . END=10052275 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:96:37:0,96,1440 +20 10052276 . T . . END=10052277 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:99:37:0,99,1485 +20 10052278 . A . . END=10052283 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1395 +20 10052284 . A . . END=10052434 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:42:99:35:0,99,1147 +20 10052435 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:41:98:41:0,98,1177 +20 10052436 . C . . END=10052449 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:41:99:37:0,99,1209 +20 10052450 . A . . END=10052454 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:93:35:0,93,1076 +20 10052455 . A . . END=10052456 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:87:35:0,87,1077 +20 10052457 . C . . END=10052460 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:90:35:0,90,1350 +20 10052461 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:84:36:0,84,1064 +20 10052462 . A . . END=10052464 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:90:36:0,90,1350 +20 10052465 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:89:35:0,89,1043 +20 10052466 . T . . END=10052475 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:96:33:0,96,1440 +20 10052476 . A . . END=10052491 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:99:34:0,102,1053 +20 10052492 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:35:93:35:0,93,1074 +20 10052493 . T . . END=10052512 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:36:99:35:0,99,1099 +20 10052513 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:91:37:0,91,1091 +20 10052514 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:79:37:0,79,1091 +20 10052515 . T . . END=10052522 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,108,1620 +20 10052523 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:98:39:0,98,1218 +20 10052524 . T . . END=10052532 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:99:37:0,101,1131 +20 10052533 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:97:39:0,97,1192 +20 10052534 . A . . END=10052547 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:38:0,105,1214 +20 10052548 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:98:40:0,98,1211 +20 10052549 . T . . END=10052551 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:37:99:35:0,102,1530 +20 10052552 . C . . END=10052553 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:38:95:37:0,95,1109 +20 10052554 . T . . END=10052571 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:38:0,99,1244 +20 10052572 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:86:40:0,86,1179 +20 10052573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:39:70:39:0,70,1057 +20 10052574 . T . . END=10052624 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:39:0,102,1151 +20 10052625 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:45:75:45:0,75,1200 +20 10052626 . A . . END=10052678 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:38:0,101,1173 +20 10052679 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:87:40:0,87,1154 +20 10052680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:99:40:0,117,1755 +20 10052681 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:40:89:40:0,89,1221 +20 10052682 . A . . END=10052687 GT:DP:GQ:MIN_DP:PL ./.:82:99:55:0,114,1800 ./.:44:99:39:0,102,1246 +20 10052688 . C A, . . BaseQRankSum=0.180;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=0.870;RAW_MQandDP=274969,77;ReadPosRankSum=1.56 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,32,0:77:99:.:1091,0,1645,1226,1741,2967:27,18,16,16 ./.:.:44:99:39:0,102,1246,102,1246,1246 +20 10052689 . A . . END=10052714 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:39:0,102,1246 +20 10052715 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:81:39:0,81,1106 +20 10052716 . T . . END=10052717 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,111,1665 +20 10052718 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:36:0,90,1022 +20 10052719 . T . . END=10052729 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:35:0,99,1485 +20 10052730 . T . . END=10052742 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10052743 . C . . END=10052746 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:85:32:0,85,1000 +20 10052747 . G . . END=10052748 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:32:0,90,1350 +20 10052749 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:55:31:0,55,818 +20 10052750 . G . . END=10052757 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:31:0,81,957 +20 10052758 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:65:30:0,65,866 +20 10052759 . A . . END=10052768 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:80:29:0,80,969 +20 10052769 . A . . END=10052776 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:32:0,90,961 +20 10052777 . C . . END=10052780 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052781 . T . . END=10052785 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052786 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:82:34:0,82,1065 +20 10052787 . A . . END=10052790 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10052791 . T . . END=10052792 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:33:0,84,1025 +20 10052793 . G . . END=10052794 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:31:0,90,1350 +20 10052795 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:83:33:0,83,967 +20 10052796 . T . . END=10052801 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:32:0,93,1395 +20 10052802 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:87:29:0,87,922 +20 10052803 . A . . END=10052807 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:93:32:0,93,1395 +20 10052808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:34:0,84,1008 +20 10052809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,984 +20 10052811 . A . . END=10052814 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1036 +20 10052815 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:54:34:0,54,983 +20 10052816 . A . . END=10052821 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,102,1120 +20 10052822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:90:38:0,90,1163 +20 10052823 . T . . END=10052826 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,108,1620 +20 10052827 . T . . END=10052830 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:38:0,96,1440 +20 10052831 . A . . END=10052843 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:36:0,102,1117 +20 10052844 . A . . END=10052846 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:37:0,94,1079 +20 10052847 . A . . END=10052850 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:35:0,102,1530 +20 10052851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1128 +20 10052852 . G . . END=10052857 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,99,1485 +20 10052858 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:37:0,90,1126 +20 10052859 . A . . END=10052874 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1011 +20 10052875 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:82:35:0,82,1003 +20 10052876 . A . . END=10052879 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,983 +20 10052880 . A . . END=10052881 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052882 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,973 +20 10052883 . A . . END=10052884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052885 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:83:34:0,83,993 +20 10052886 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,944 +20 10052887 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:82:33:0,82,959 +20 10052888 . T . . END=10052889 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1006 +20 10052890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:98:33:0,98,975 +20 10052891 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1027 +20 10052892 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1000 +20 10052893 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1021 +20 10052894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:72:35:0,72,976 +20 10052895 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:93:35:0,93,1050 +20 10052896 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,108,1070 +20 10052897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:36:0,90,1044 +20 10052898 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,105,1575 +20 10052899 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:36:0,93,1041 +20 10052900 . A . . END=10052904 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1079 +20 10052905 . T . . END=10052908 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:36:0,96,1440 +20 10052909 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,99,1485 +20 10052910 . G . . END=10052914 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1395 +20 10052915 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10052916 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:92:36:0,92,1068 +20 10052917 . C . . END=10052918 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10052919 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1119 +20 10052920 . A . . END=10052922 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10052923 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:83:33:0,83,996 +20 10052924 . C . . END=10052926 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052927 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1035 +20 10052928 . C . . END=10052929 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10052930 . T . . END=10052931 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:81:33:0,81,996 +20 10052932 . A . . END=10052933 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:34:0,96,1440 +20 10052934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1024 +20 10052935 . T . . END=10052937 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:33:0,90,1052 +20 10052938 . C . . END=10052940 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:33:0,99,1056 +20 10052941 . C . . END=10052943 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:34:0,96,1440 +20 10052944 . T . . END=10052947 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1485 +20 10052948 . A . . END=10052955 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10052956 . A . . END=10052959 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:81:31:0,81,1215 +20 10052960 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:65:31:0,65,968 +20 10052961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10052962 . T . . END=10052963 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:29:0,78,1170 +20 10052964 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:31:0,81,1215 +20 10052965 . A . . END=10052991 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:27:75:25:0,75,807 +20 10052992 . A . . END=10052993 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:66:27:0,66,845 +20 10052994 . T . . END=10052995 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10052996 . G . . END=10053010 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:72:25:0,72,760 +20 10053011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:25:48:25:0,48,756 +20 10053012 . C . . END=10053020 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:26:72:24:0,72,750 +20 10053021 . A . . END=10053022 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:84:28:0,84,850 +20 10053023 . T G, . . BaseQRankSum=-1.451e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=-1.276e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:10,17,0:27:99:.:419,0,247,449,298,746:7,3,8,9 +20 10053024 . C . . END=10053025 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:84:29:0,84,1260 +20 10053026 . C . . END=10053029 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:90:31:0,90,1350 +20 10053030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,894 +20 10053031 . G . . END=10053039 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:30:0,90,908 +20 10053040 . C . . END=10053041 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:81:34:0,81,982 +20 10053042 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10053043 . C . . END=10053044 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,962 +20 10053045 . A . . END=10053049 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,1350 +20 10053050 . C . . END=10053051 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:32:0,87,887 +20 10053052 . T . . END=10053059 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:34:0,90,1350 +20 10053060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:77:35:0,77,1044 +20 10053061 . T . . END=10053063 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:34:0,96,1440 +20 10053064 . A . . END=10053082 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:33:0,99,1020 +20 10053083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:76:38:0,76,961 +20 10053084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1089 +20 10053085 . G . . END=10053086 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10053087 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1107 +20 10053088 . A . . END=10053089 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10053090 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:38:0,94,1109 +20 10053091 . C . . END=10053093 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10053094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:71:34:0,71,1043 +20 10053095 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:88:36:0,88,1029 +20 10053096 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,981 +20 10053097 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,105,1056 +20 10053098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:86:36:0,86,1052 +20 10053099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,105,1071 +20 10053100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1071 +20 10053101 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:80:34:0,80,985 +20 10053102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:35:0,94,1013 +20 10053103 . C . . END=10053107 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,995 +20 10053108 . A . . END=10053110 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:34:0,94,1042 +20 10053111 . T . . END=10053113 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,100,1102 +20 10053114 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1112 +20 10053115 . A . . END=10053117 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:36:0,90,1086 +20 10053118 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:60:35:0,60,1023 +20 10053119 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:85:35:0,85,1098 +20 10053120 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:73:34:0,73,1027 +20 10053121 . C . . END=10053122 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1485 +20 10053123 . T . . END=10053124 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:84:36:0,84,1010 +20 10053125 . T . . END=10053126 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1041 +20 10053127 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,102,1530 +20 10053128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:70:35:0,70,1071 +20 10053129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10053130 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:72:35:0,72,1012 +20 10053131 . C . . END=10053132 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:34:0,90,1350 +20 10053133 . A . . END=10053134 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:84:36:0,84,1060 +20 10053135 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:37:0,96,1440 +20 10053136 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,99,1485 +20 10053137 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:86:38:0,86,1117 +20 10053138 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,105,1575 +20 10053139 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:78:36:0,78,1056 +20 10053140 . C . . END=10053141 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,102,1097 +20 10053142 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:62:38:0,62,1077 +20 10053143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:89:37:0,89,1106 +20 10053144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:92:38:0,92,1104 +20 10053145 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:37:0,81,1072 +20 10053146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,111,1665 +20 10053147 . T . . END=10053148 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:80:38:0,80,1111 +20 10053149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:95:39:0,95,1168 +20 10053150 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,102,1530 +20 10053151 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1136 +20 10053152 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:92:38:0,92,1116 +20 10053153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:87:38:0,87,1119 +20 10053154 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:75:39:0,75,1062 +20 10053155 . A . . END=10053156 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:92:38:0,92,1109 +20 10053157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1112 +20 10053158 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:91:38:0,91,1141 +20 10053159 . A . . END=10053160 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:80:37:0,80,1085 +20 10053161 . A . . END=10053162 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1083 +20 10053163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:74:39:0,74,1116 +20 10053164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,102,1530 +20 10053165 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:85:39:0,85,1087 +20 10053166 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:93:39:0,93,1109 +20 10053167 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:76:37:0,76,1045 +20 10053168 . A . . END=10053171 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:93:36:0,93,1395 +20 10053172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:83:36:0,83,1035 +20 10053173 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:75:37:0,75,1016 +20 10053174 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:80:36:0,80,1054 +20 10053175 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:79:37:0,79,1081 +20 10053176 . T . . END=10053183 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1017 +20 10053184 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:62:32:0,62,904 +20 10053185 . G . . END=10053190 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:82:30:0,82,909 +20 10053191 . A . . END=10053201 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,961 +20 10053202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053203 . T . . END=10053206 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10053207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:75:34:0,75,975 +20 10053208 . T . . END=10053213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:33:0,93,1395 +20 10053214 . C . . END=10053216 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,102,1058 +20 10053217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:86:35:0,86,997 +20 10053218 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,984 +20 10053219 . T . . END=10053220 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053221 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053222 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:82:34:0,82,1003 +20 10053223 . A . . END=10053226 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:35:0,93,1395 +20 10053227 . C . . END=10053229 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10053230 . T . . END=10053233 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053234 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053235 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1022 +20 10053236 . G . . END=10053243 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1009 +20 10053244 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,983 +20 10053245 . A . . END=10053251 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,969 +20 10053252 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053253 . T . . END=10053261 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10053262 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10053263 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:89:36:0,89,1072 +20 10053264 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10053265 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:95:36:0,95,1098 +20 10053266 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10053267 . G A, . . BaseQRankSum=0.321;ClippingRankSum=0.00;DP=72;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.409 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:19,16,0:35:99:.:383,0,480,440,527,968:10,9,9,7 +20 10053268 . T . . END=10053275 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,99,1077 +20 10053276 . A . . END=10053277 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10053278 . A . . END=10053280 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:87:33:0,87,1305 +20 10053281 . A . . END=10053288 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1019 +20 10053289 . C . . END=10053349 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:33:0,99,1008 +20 10053350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:92:43:0,92,1223 +20 10053351 . C . . END=10053366 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:41:0,117,1755 +20 10053367 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:70:45:0,70,1249 +20 10053368 . A . . END=10053394 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:45:0,120,1800 +20 10053395 . G C, . . DP=95;ExcessHet=3.01;RAW_MQandDP=212400,59 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:0,57,0:57:99:.:1569,169,0,1569,169,1569:0,0,30,27 +20 10053396 . G . . END=10053463 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:58:99:49:0,120,1800 +20 10053464 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:94:50:0,94,1435 +20 10053465 . A . . END=10053708 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:99:39:0,103,1226 +20 10053709 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:91:47:0,91,1335 +20 10053710 . C . . END=10053890 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:52:99:45:0,110,1450 +20 10053891 . C G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=169200,47 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:0,47,0:47:99:.:1433,140,0,1433,140,1433:0,0,27,20 +20 10053892 . T . . END=10054050 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:99:42:0,99,1313 +20 10054051 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:50:56:50:0,56,1394 +20 10054052 . A . . END=10054116 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:40:0,111,1239 +20 10054117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:50:45:0,50,1211 +20 10054118 . A . . END=10054156 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:37:0,99,1278 +20 10054157 . T . . END=10054158 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1440 +20 10054159 . T . . END=10054181 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:34:0,99,1051 +20 10054182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1027 +20 10054183 . T . . END=10054185 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1036 +20 10054186 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1034 +20 10054187 . G . . END=10054200 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:34:0,99,1077 +20 10054201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:89:35:0,89,1087 +20 10054202 . A . . END=10054204 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10054205 . T . . END=10054206 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:96:36:0,96,1164 +20 10054207 . G . . END=10054210 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1485 +20 10054211 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:86:34:0,86,1010 +20 10054212 . G . . END=10054213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1042 +20 10054214 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:91:36:0,91,1111 +20 10054215 . C . . END=10054219 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,100,1123 +20 10054220 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1108 +20 10054221 . G . . END=10054222 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10054223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1123 +20 10054224 . T . . END=10054225 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10054226 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:96:37:0,96,1440 +20 10054227 . A . . END=10054229 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,99,1485 +20 10054230 . T . . END=10054233 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:93:38:0,93,1395 +20 10054234 . T . . END=10054238 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,99,1485 +20 10054239 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:38:0,96,1440 +20 10054240 . G . . END=10054241 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10054242 . T . . END=10054247 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:93:36:0,93,1072 +20 10054248 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:87:36:0,87,1057 +20 10054249 . A . . END=10054256 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:31:0,90,1350 +20 10054257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:78:32:0,78,955 +20 10054258 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:90:30:0,90,915 +20 10054259 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,886 +20 10054260 . T . . END=10054272 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:29:0,81,1215 +20 10054273 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,935 +20 10054274 . T . . END=10054280 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:81:30:0,81,1215 +20 10054281 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:65:29:0,65,881 +20 10054282 . T . . END=10054283 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:28:0,81,1215 +20 10054284 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:90:31:0,90,1350 +20 10054285 . T . . END=10054288 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:87:29:0,87,886 +20 10054289 . C . . END=10054292 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10054293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:77:31:0,77,929 +20 10054294 . T . . END=10054297 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:87:31:0,87,1305 +20 10054298 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:65:31:0,65,936 +20 10054299 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:84:32:0,84,961 +20 10054300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10054301 . C . . END=10054303 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:80:32:0,80,983 +20 10054304 . A . . END=10054312 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10054313 . C . . END=10054470 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:33:0,99,1039 +20 10054471 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:91:43:0,91,1200 +20 10054472 . T . . END=10054503 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:37:0,100,1182 +20 10054504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:83:38:0,83,1156 +20 10054505 . A . . END=10054510 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:38:0,103,1188 +20 10054511 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:90:41:0,90,1239 +20 10054512 . A . . END=10054552 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:34:0,99,973 +20 10054553 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:94:40:0,94,1236 +20 10054554 . T . . END=10054561 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:40:0,101,1254 +20 10054562 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:80:39:0,80,1101 +20 10054563 . T . . END=10054574 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:35:0,100,1023 +20 10054575 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:35:0,90,948 +20 10054576 . A . . END=10054578 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,108,1620 +20 10054579 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1126 +20 10054580 . T . . END=10054585 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1175 +20 10054586 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:94:39:0,94,1239 +20 10054587 . A . . END=10054597 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:40:0,100,1240 +20 10054598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:92:41:0,92,1227 +20 10054599 . T . . END=10054603 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:41:0,101,1286 +20 10054604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:94:42:0,94,1232 +20 10054605 . T . . END=10054615 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:41:0,117,1303 +20 10054616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:94:44:0,94,1232 +20 10054617 . T . . END=10054697 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:43:0,99,1238 +20 10054698 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:83:48:0,83,1358 +20 10054699 . T . . END=10055045 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:42:0,99,1279 +20 10055046 . A G, . . BaseQRankSum=-5.250e-01;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=1.50 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:18,21,0:39:99:.:530,0,438,584,501,1085:11,7,8,13 +20 10055047 . C . . END=10055130 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:48:99:40:0,100,1238 +20 10055131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:81:44:0,81,1224 +20 10055132 . A . . END=10055216 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:99:39:0,102,1149 +20 10055217 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:87:44:0,87,1313 +20 10055218 . T . . END=10055685 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:52:99:41:0,102,1271 +20 10055686 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:90:46:0,90,1339 +20 10055687 . C . . END=10055803 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:37:0,99,1170 +20 10055804 . A . . END=10055808 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:36:0,90,1350 +20 10055809 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:87:37:0,87,1305 +20 10055810 . A . . END=10055813 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:35:0,90,1350 +20 10055814 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:87:34:0,87,1305 +20 10055815 . A . . END=10055816 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1350 +20 10055817 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:69:33:0,69,983 +20 10055818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:73:33:0,73,1019 +20 10055819 . A . . END=10055822 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:32:0,84,1260 +20 10055823 . G . . END=10055825 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,1170 +20 10055826 . A . . END=10055828 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:31:0,81,1215 +20 10055829 . T C, . . BaseQRankSum=-2.257e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.424 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:17,15,0:32:99:.:346,0,466,397,511,908:7,10,9,6 +20 10055830 . T . . END=10055839 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:34:0,90,1350 +20 10055840 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:73:35:0,73,1052 +20 10055841 . T . . END=10055843 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:90:35:0,90,1350 +20 10055844 . G . . END=10055848 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,99,1485 +20 10055849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1158 +20 10055850 . G . . END=10055854 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10055855 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:89:38:0,89,1164 +20 10055856 . T . . END=10055860 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1073 +20 10055861 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:96:36:0,96,1100 +20 10055862 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,105,1575 +20 10055863 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:87:36:0,87,1094 +20 10055864 . A . . END=10055870 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1082 +20 10055871 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1116 +20 10055872 . C . . END=10055877 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,99,1144 +20 10055878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1124 +20 10055879 . A . . END=10055884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,111,1665 +20 10055885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:89:37:0,89,1172 +20 10055886 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,111,1665 +20 10055887 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1104 +20 10055888 . T . . END=10055889 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:39:0,114,1710 +20 10055890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:76:40:0,76,1165 +20 10055891 . C . . END=10055939 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:42:0,110,1331 +20 10055940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:85:45:0,85,1288 +20 10055941 . C . . END=10055963 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:99:44:0,114,1439 +20 10055964 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:90:46:0,90,1287 +20 10055965 . C . . END=10055979 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:41:0,101,1204 +20 10055980 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:90:44:0,90,1195 +20 10055981 . T . . END=10056003 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:38:0,101,1140 +20 10056004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:97:37:0,97,1064 +20 10056005 . A . . END=10056025 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:37:0,105,1234 +20 10056026 . C G, . . BaseQRankSum=1.78;ClippingRankSum=0.00;DP=74;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-7.530e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:74:99:36:0,99,1485,99,1485,1485 ./.:18,19,0:37:99:.:464,0,405,518,461,980:5,13,10,9 +20 10056027 . G . . END=10056032 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:39:0,105,1575 +20 10056033 . G . . END=10056034 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:96:39:0,96,1440 +20 10056035 . A . . END=10056043 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:34:0,81,1215 +20 10056044 . A . . END=10056049 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:75:28:0,75,1125 +20 10056050 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:69:28:0,69,847 +20 10056051 . A . . END=10056054 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:75:28:0,75,1125 +20 10056055 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:27:69:27:0,69,801 +20 10056056 . T . . END=10056062 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:28:75:27:0,75,1125 +20 10056063 . A . . END=10056064 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:81:29:0,81,1215 +20 10056065 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:29:78:29:0,78,1170 +20 10056066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:81:30:0,81,1215 +20 10056067 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:30:78:30:0,78,1170 +20 10056068 . T . . END=10056071 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:81:32:0,81,1215 +20 10056072 . T . . END=10056073 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10056074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10056075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:34:0,93,1395 +20 10056076 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:86:35:0,86,1018 +20 10056077 . A . . END=10056097 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:90:31:0,90,943 +20 10056098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:67:32:0,67,913 +20 10056099 . C . . END=10056102 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,949 +20 10056103 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:83:32:0,83,927 +20 10056104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,986 +20 10056105 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:88:35:0,88,1016 +20 10056106 . C . . END=10056107 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,102,1057 +20 10056108 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:84:33:0,84,927 +20 10056109 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:63:32:0,63,832 +20 10056110 . C . . END=10056111 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:34:0,99,1099 +20 10056112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,1022 +20 10056113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,117,1171 +20 10056114 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:89:39:0,89,1095 +20 10056115 . C . . END=10056124 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,102,1133 +20 10056125 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:83:39:0,83,1071 +20 10056126 . G . . END=10056130 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:36:0,102,1117 +20 10056131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1068 +20 10056132 . C . . END=10056133 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,105,1108 +20 10056134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1091 +20 10056135 . A . . END=10056139 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10056140 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:95:37:0,95,1117 +20 10056141 . C . . END=10056149 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1530 +20 10056150 . A . . END=10056154 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:93:36:0,93,1112 +20 10056155 . A . . END=10056162 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:33:0,99,1043 +20 10056163 . A . . END=10056167 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:33:0,96,1440 +20 10056168 . T . . END=10056172 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10056173 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:97:36:0,97,1106 +20 10056174 . T . . END=10056192 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:35:0,102,1140 +20 10056193 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1190 +20 10056194 . G . . END=10056196 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:39:0,106,1167 +20 10056197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:86:39:0,86,1164 +20 10056198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10056199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:88:38:0,88,1151 +20 10056200 . T . . END=10056201 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:38:0,108,1620 +20 10056202 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:88:39:0,88,1146 +20 10056203 . T . . END=10056207 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:38:0,111,1665 +20 10056208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:96:39:0,96,1205 +20 10056209 . A . . END=10056210 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,102,1530 +20 10056211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:97:38:0,97,1217 +20 10056212 . T . . END=10056213 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10056214 . A . . END=10056225 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:90:35:0,90,1051 +20 10056226 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10056227 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:96:35:0,96,1440 +20 10056228 . A . . END=10056231 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:34:0,99,1485 +20 10056232 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:83:38:0,83,1119 +20 10056233 . A . . END=10056243 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,105,996 +20 10056244 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1083 +20 10056245 . G . . END=10056247 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:38:0,105,1575 +20 10056248 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:84:39:0,84,1140 +20 10056249 . T . . END=10056264 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:37:0,108,1133 +20 10056265 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:97:40:0,97,1181 +20 10056266 . A . . END=10056330 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:38:0,108,1167 +20 10056331 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:98:41:0,98,1181 +20 10056332 . C . . END=10056362 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:38:0,103,1172 +20 10056363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:85:44:0,85,1243 +20 10056364 . C . . END=10056572 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:37:0,99,1191 +20 10056573 . G . . END=10056577 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:94:37:0,94,1146 +20 10056578 . T . . END=10056579 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10056580 . C . . END=10056581 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:37:0,96,1440 +20 10056582 . G . . END=10056583 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10056584 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:81:37:0,81,1159 +20 10056585 . A . . END=10056586 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,102,1530 +20 10056587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:34:0,90,971 +20 10056588 . T . . END=10056589 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,105,1575 +20 10056590 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:98:37:0,98,1141 +20 10056591 . C . . END=10056592 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:36:0,108,1140 +20 10056593 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:92:36:0,92,1127 +20 10056594 . T . . END=10056606 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1101 +20 10056607 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,975 +20 10056608 . G . . END=10056612 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,99,1485 +20 10056613 . A . . END=10056615 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:96:34:0,96,1440 +20 10056616 . C . . END=10056628 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:33:0,99,1018 +20 10056629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:96:32:0,96,1011 +20 10056630 . G . . END=10056634 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:99:33:0,99,1009 +20 10056635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:34:0,91,1036 +20 10056636 . A . . END=10056640 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:99:33:0,99,1011 +20 10056641 . G . . END=10056645 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:91:31:0,91,957 +20 10056646 . T . . END=10056647 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:36:0,102,1530 +20 10056648 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:93:37:0,93,1112 +20 10056649 . G . . END=10056711 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:37:0,99,1142 +20 10056712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:88:41:0,88,1173 +20 10056713 . T . . END=10056781 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:38:0,99,1150 +20 10056782 . A C, . . BaseQRankSum=-1.811e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=2.51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:74:99:36:.:.:0,99,1485,99,1485,1485 ./.:26,17,0:43:99:.:0|1:10056782_A_C:662,0,1496,740,1550,2290:16,10,7,10 +20 10056783 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:46:99:46:0,120,1800 +20 10056784 . A C, . . BaseQRankSum=-9.100e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=2.15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:74:99:36:.:.:0,99,1485,99,1485,1485 ./.:25,18,0:43:99:.:0|1:10056782_A_C:662,0,1496,740,1550,2290:15,10,8,10 +20 10056785 . A . . END=10056845 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:45:99:39:0,99,1146 +20 10056846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:86:40:0,86,1144 +20 10056847 . A . . END=10056852 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:39:0,111,1665 +20 10056853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:84:39:0,84,1136 +20 10056854 . A . . END=10056858 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:36:0,99,1122 +20 10056859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:88:37:0,88,1081 +20 10056860 . G . . END=10056884 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:40:99:36:0,102,1181 +20 10056885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:98:44:0,98,1322 +20 10056886 . T . . END=10056912 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:44:99:40:0,99,1219 +20 10056913 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:43:96:43:0,96,1292 +20 10056914 . A . . END=10057222 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:49:99:36:0,102,1288 +20 10057223 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:86:38:0,86,1070 +20 10057224 . A . . END=10057585 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:54:99:36:0,105,1038 +20 10057586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:38:96:38:0,96,1161 +20 10057587 . T . . END=10057675 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:99:36:0,99,1146 +20 10057676 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:97:42:0,97,1261 +20 10057677 . G . . END=10057918 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:47:99:40:0,101,1192 +20 10057919 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:90:41:0,90,1200 +20 10057920 . A . . END=10057921 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:41:99:40:0,105,1575 +20 10057922 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:42:94:42:0,94,1235 +20 10057923 . C . . END=10057933 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:39:99:36:0,102,1530 +20 10057934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:93:37:0,93,1065 +20 10057935 . G . . END=10057936 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:99:37:0,102,1530 +20 10057937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:37:91:37:0,91,1102 +20 10057938 . C . . END=10057940 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:35:0,102,1530 +20 10057941 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:92:35:0,92,1048 +20 10057942 . A . . END=10057945 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:99:34:0,102,1035 +20 10057946 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:94:35:0,94,1051 +20 10057947 . C . . END=10057953 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10057954 . C . . END=10057955 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:36:90:35:0,90,1350 +20 10057956 . T . . END=10057957 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:35:81:34:0,81,1001 +20 10057958 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:76:33:0,76,1028 +20 10057959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10057960 . T . . END=10057974 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10057975 . G . . END=10057977 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1305 +20 10057978 . C . . END=10057993 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:90:33:0,90,1044 +20 10057994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:34:0,84,1031 +20 10057995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:93:34:0,93,1395 +20 10057996 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:33:87:33:0,87,1017 +20 10057997 . A . . END=10057999 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:32:0,90,1350 +20 10058000 . G . . END=10058003 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:84:31:0,84,1014 +20 10058004 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:34:78:34:0,78,1170 +20 10058005 . T . . END=10058018 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:31:81:28:0,81,905 +20 10058019 . T . . END=10058021 GT:DP:GQ:MIN_DP:PL ./.:74:99:36:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058022 . T C, . . BaseQRankSum=-2.346e+00;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.466;RAW_MQandDP=237579,68;ReadPosRankSum=-4.530e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,32,0:68:99:.:1004,0,1261,1112,1357,2469:16,20,13,19 ./.:.:32:90:31:0,90,1350,90,1350,1350 +20 10058023 . A . . END=10058028 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:67:34:0,67,982 +20 10058030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:71:33:0,71,991 +20 10058031 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:33:0,93,1395 +20 10058032 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:77:32:0,77,909 +20 10058033 . C . . END=10058035 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:33:0,93,1395 +20 10058036 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:88:33:0,88,1027 +20 10058037 . C . . END=10058039 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:96:32:0,96,1038 +20 10058040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:84:32:0,84,971 +20 10058041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:78:32:0,78,946 +20 10058042 . C . . END=10058049 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:32:0,90,977 +20 10058050 . T . . END=10058051 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:82:32:0,82,991 +20 10058052 . G . . END=10058053 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:95:32:0,95,965 +20 10058054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:34:0,102,1044 +20 10058055 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:77:34:0,77,961 +20 10058056 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:92:35:0,92,1082 +20 10058057 . T . . END=10058060 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,99,1485 +20 10058061 . G . . END=10058062 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:90:36:0,90,1062 +20 10058063 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:37:0,102,1530 +20 10058064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:78:38:0,78,977 +20 10058065 . A . . END=10058085 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:37:0,103,1086 +20 10058086 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:95:41:0,95,1134 +20 10058087 . A . . END=10058161 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:39:0,101,1175 +20 10058162 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:98:38:0,98,1129 +20 10058163 . G . . END=10058178 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:38:0,108,1127 +20 10058179 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:89:40:0,89,1088 +20 10058180 . C . . END=10058181 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:38:0,111,1665 +20 10058182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:86:39:0,86,1108 +20 10058183 . A . . END=10058184 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:39:0,111,1665 +20 10058185 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:96:39:0,96,1130 +20 10058186 . A . . END=10058189 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:37:0,111,1100 +20 10058190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:89:37:0,89,1023 +20 10058191 . G . . END=10058193 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:37:0,108,1072 +20 10058194 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:95:38:0,95,1021 +20 10058195 . G . . END=10058206 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:36:0,102,1530 +20 10058207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:38:0,96,1068 +20 10058208 . A . . END=10058210 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:37:0,102,1530 +20 10058211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:81:38:0,81,978 +20 10058212 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:90:36:0,90,1000 +20 10058213 . T . . END=10058236 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:38:0,102,1120 +20 10058237 . G . . END=10058239 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:37:0,96,1440 +20 10058240 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:39:0,99,1485 +20 10058241 . T . . END=10058243 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:36:0,96,1440 +20 10058244 . G . . END=10058245 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,99,1485 +20 10058246 . G . . END=10058247 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:93:36:0,93,1395 +20 10058248 . G A, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=111600,31;ReadPosRankSum=-6.060e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:1,30,0:31:82:.:898,82,0,900,89,907:1,0,15,15 +20 10058249 . A . . END=10058251 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:34:0,90,1020 +20 10058252 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:86:33:0,86,880 +20 10058253 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10058254 . C . . END=10058257 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:87:31:0,87,1305 +20 10058258 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:70:29:0,70,882 +20 10058259 . C . . END=10058260 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058261 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:83:33:0,83,997 +20 10058262 . C . . END=10058263 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058264 . T . . END=10058265 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10058266 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:75:31:0,75,928 +20 10058267 . C . . END=10058271 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:30:0,87,1305 +20 10058272 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:78:31:0,78,968 +20 10058273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10058274 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:58:28:0,58,838 +20 10058275 . G . . END=10058286 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:81:29:0,81,1215 +20 10058287 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:76:29:0,76,881 +20 10058288 . C . . END=10058290 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:81:28:0,81,926 +20 10058291 . T . . END=10058295 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:90:30:0,90,929 +20 10058296 . T . . END=10058303 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:29:0,81,1215 +20 10058304 . T . . END=10058307 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:78:28:0,78,1170 +20 10058308 . C . . END=10058310 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:81:28:0,81,1215 +20 10058311 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:68:28:0,68,848 +20 10058312 . T . . END=10058314 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:81:27:0,81,828 +20 10058315 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:70:27:0,70,782 +20 10058316 . C . . END=10058328 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:81:27:0,81,781 +20 10058329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:55:29:0,55,866 +20 10058330 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:69:29:0,69,865 +20 10058331 . T . . END=10058335 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:29:0,81,1215 +20 10058336 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10058337 . C . . END=10058338 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:84:32:0,84,1260 +20 10058339 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:79:34:0,79,943 +20 10058340 . A . . END=10058343 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:83:32:0,83,918 +20 10058344 . T . . END=10058347 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:31:0,90,1350 +20 10058348 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:87:32:0,87,1305 +20 10058349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10058350 . T . . END=10058351 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:86:33:0,86,955 +20 10058352 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:78:32:0,78,881 +20 10058353 . T . . END=10058355 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:84:31:0,84,1260 +20 10058356 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:78:33:0,78,1170 +20 10058357 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:81:32:0,81,939 +20 10058358 . T . . END=10058359 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:78:30:0,78,1170 +20 10058360 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:81:31:0,81,1215 +20 10058361 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:75:31:0,75,883 +20 10058362 . C . . END=10058364 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:87:33:0,87,1305 +20 10058365 . A . . END=10058367 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:90:30:0,90,859 +20 10058368 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10058369 . A . . END=10058373 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,1350 +20 10058374 . G . . END=10058375 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:76:30:0,76,871 +20 10058376 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1350 +20 10058377 . T . . END=10058383 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:30:0,87,1305 +20 10058384 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:90:31:0,90,1350 +20 10058385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:81:31:0,81,900 +20 10058386 . C . . END=10058387 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:32:0,93,1395 +20 10058388 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:84:28:0,84,847 +20 10058389 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:34:0,99,1485 +20 10058390 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:34:0,90,984 +20 10058391 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:77:33:0,77,918 +20 10058392 . C . . END=10058397 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:33:0,99,1049 +20 10058398 . A . . END=10058400 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:96:34:0,96,1440 +20 10058401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:86:34:0,86,994 +20 10058402 . C . . END=10058406 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:36:0,99,1182 +20 10058407 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:68:38:0,68,1096 +20 10058408 . A . . END=10058412 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,99,1485 +20 10058413 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:94:35:0,94,1056 +20 10058414 . T . . END=10058430 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,99,1100 +20 10058431 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:35:0,93,1044 +20 10058432 . A . . END=10058440 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:35:0,99,1153 +20 10058441 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:95:36:0,95,1110 +20 10058442 . T . . END=10058455 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,105,1149 +20 10058456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:95:37:0,95,1086 +20 10058457 . C . . END=10058562 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:37:0,105,1178 +20 10058563 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:94:40:0,94,1158 +20 10058564 . A . . END=10058571 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:41:0,117,1755 +20 10058572 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:83:39:0,83,1096 +20 10058573 . C . . END=10058644 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:44:99:40:0,99,1167 +20 10058645 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:92:41:0,92,1209 +20 10058646 . C . . END=10058679 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:39:0,100,1193 +20 10058680 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:88:41:0,88,1181 +20 10058681 . A . . END=10058740 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:45:99:42:0,112,1413 +20 10058741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:44:98:44:0,98,1318 +20 10058742 . A . . END=10058823 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:44:99:38:0,105,1214 +20 10058824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:38:0,96,1062 +20 10058825 . T . . END=10058826 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:40:0,114,1710 +20 10058827 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:91:41:0,91,1239 +20 10058828 . G . . END=10058902 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:40:0,105,1231 +20 10058903 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:90:41:0,90,1222 +20 10058904 . A . . END=10058908 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:39:0,102,1138 +20 10058909 . T . . END=10058910 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:96:40:0,96,1440 +20 10058911 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:41:0,99,1485 +20 10058912 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:96:41:0,96,1440 +20 10058913 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:40:0,99,1485 +20 10058914 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:86:40:0,86,1174 +20 10058915 . A . . END=10058924 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:36:0,108,1195 +20 10058925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:84:37:0,84,1151 +20 10058926 . T . . END=10058931 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:37:0,108,1174 +20 10058932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:96:39:0,96,1195 +20 10058933 . T . . END=10058937 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:40:0,103,1241 +20 10058938 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:85:41:0,85,1175 +20 10058939 . C . . END=10058956 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:38:0,101,1225 +20 10058957 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:97:38:0,97,1142 +20 10058958 . C . . END=10058974 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:39:0,103,1194 +20 10058975 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:90:39:0,90,1141 +20 10058976 . T . . END=10058980 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:38:0,99,1485 +20 10058981 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:85:38:0,85,1090 +20 10058982 . A . . END=10058987 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:93:33:0,93,1395 +20 10058988 . T . . END=10058990 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:82:31:0,82,971 +20 10058991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:74:34:0,74,962 +20 10058992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:84:34:0,84,1260 +20 10058993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:62:33:0,62,920 +20 10058994 . C . . END=10058995 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:78:31:0,78,1170 +20 10058996 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:67:32:0,67,925 +20 10058997 . A . . END=10059001 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:78:29:0,78,1170 +20 10059002 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:30:0,81,1215 +20 10059003 . G . . END=10059008 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:75:27:0,75,1125 +20 10059009 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:58:27:0,58,763 +20 10059010 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:59:30:0,59,811 +20 10059011 . A . . END=10059014 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:27:0,81,833 +20 10059015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:50:27:0,50,797 +20 10059016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:84:28:0,84,863 +20 10059017 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:72:28:0,72,834 +20 10059018 . C . . END=10059024 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:27:0,81,848 +20 10059025 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:33:0,93,1395 +20 10059026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:79:33:0,79,943 +20 10059027 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:66:33:0,66,895 +20 10059028 . T . . END=10059029 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:96:33:0,96,1440 +20 10059030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:85:34:0,85,1010 +20 10059031 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:70:35:0,70,985 +20 10059032 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:35:0,93,1395 +20 10059033 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:72:35:0,72,948 +20 10059034 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:85:38:0,85,1017 +20 10059035 . C . . END=10059040 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,99,1485 +20 10059041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:35:0,93,1053 +20 10059042 . C . . END=10059050 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,102,1068 +20 10059051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:79:37:0,79,965 +20 10059052 . G . . END=10059055 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:35:0,102,1031 +20 10059056 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:38:0,96,1075 +20 10059057 . T . . END=10059065 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:35:0,99,1485 +20 10059066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:35:0,93,1036 +20 10059067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:99:33:0,99,976 +20 10059068 . C . . END=10059076 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:33:0,90,1350 +20 10059077 . C . . END=10059078 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:87:34:0,87,1305 +20 10059079 . T . . END=10059080 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:33:0,90,1350 +20 10059081 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:87:34:0,87,1305 +20 10059082 . C . . END=10059087 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:32:0,90,1350 +20 10059088 . C . . END=10059089 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:87:32:0,87,1305 +20 10059090 . C . . END=10059092 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1350 +20 10059093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:81:32:0,81,973 +20 10059094 . A . . END=10059095 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:32:0,93,1395 +20 10059096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:77:32:0,77,950 +20 10059097 . G . . END=10059099 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:93:31:0,93,981 +20 10059100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:75:31:0,75,916 +20 10059101 . T . . END=10059105 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,975 +20 10059106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:84:32:0,84,941 +20 10059107 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1350 +20 10059108 . A . . END=10059110 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10059111 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:35:0,93,1096 +20 10059112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:34:0,99,1485 +20 10059113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:88:33:0,88,1016 +20 10059114 . T . . END=10059116 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:96:33:0,96,1440 +20 10059117 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:85:33:0,85,1021 +20 10059118 . G . . END=10059121 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:93:33:0,93,1395 +20 10059122 . T . . END=10059134 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,102,1530 +20 10059135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:97:37:0,97,1131 +20 10059136 . T . . END=10059142 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:36:0,102,1530 +20 10059143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:36:0,96,1107 +20 10059144 . C . . END=10059147 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:34:0,102,1105 +20 10059148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:94:36:0,94,1118 +20 10059149 . A . . END=10059151 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10059152 . A . . END=10059158 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:96:34:0,96,1440 +20 10059159 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:36:0,102,1530 +20 10059160 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:93:36:0,93,1079 +20 10059161 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10059162 . T . . END=10059163 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:96:34:0,96,1440 +20 10059164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10059165 . G . . END=10059170 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:91:34:0,91,1055 +20 10059171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10059172 . T . . END=10059174 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:34:0,90,1004 +20 10059175 . G . . END=10059176 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:84:32:0,84,1260 +20 10059177 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:90:35:0,90,1350 +20 10059178 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:87:34:0,87,1305 +20 10059179 . T . . END=10059185 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:90:32:0,90,1350 +20 10059186 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:79:32:0,79,940 +20 10059187 . C . . END=10059188 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:33:0,93,1395 +20 10059189 . T . . END=10059190 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:81:32:0,81,908 +20 10059191 . G . . END=10059196 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,952 +20 10059197 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:83:32:0,83,978 +20 10059198 . C . . END=10059200 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1046 +20 10059201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:83:33:0,83,1003 +20 10059202 . T . . END=10059212 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:90:31:0,90,974 +20 10059213 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:80:32:0,80,984 +20 10059214 . T . . END=10059216 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:96:33:0,96,1440 +20 10059217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:86:34:0,86,1020 +20 10059218 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:96:34:0,96,1440 +20 10059219 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:85:34:0,85,991 +20 10059220 . C . . END=10059226 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:33:0,90,1350 +20 10059227 . A . . END=10059236 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:80:31:0,80,957 +20 10059237 . A . . END=10059246 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:30:0,90,872 +20 10059247 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:87:32:0,87,1305 +20 10059248 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10059249 . T . . END=10059258 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:80:31:0,80,936 +20 10059259 . G . . END=10059264 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:72:30:0,72,855 +20 10059265 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:57:30:0,57,817 +20 10059266 . C . . END=10059268 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:72:31:0,72,1080 +20 10059269 . A . . END=10059271 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:69:26:0,69,1035 +20 10059272 . C . . END=10059273 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:72:27:0,72,1080 +20 10059274 . G . . END=10059275 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:63:27:0,63,786 +20 10059276 . A . . END=10059281 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:72:26:0,72,1080 +20 10059282 . C . . END=10059286 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:81:27:0,81,852 +20 10059287 . C . . END=10059296 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:78:27:0,78,1170 +20 10059297 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:81:27:0,81,877 +20 10059298 . C . . END=10059299 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:78:27:0,78,1170 +20 10059300 . T . . END=10059306 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:82:29:0,82,907 +20 10059307 . C . . END=10059317 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:90:30:0,90,917 +20 10059318 . G . . END=10059333 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:30:0,81,1215 +20 10059334 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:74:30:0,74,894 +20 10059335 . C . . END=10059339 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:81:28:0,81,1215 +20 10059340 . C . . END=10059345 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:71:28:0,71,832 +20 10059346 . T . . END=10059348 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:30:0,81,1215 +20 10059349 . G . . END=10059353 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:75:28:0,75,1125 +20 10059354 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:30:0,81,1215 +20 10059355 . G . . END=10059365 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:75:26:0,75,819 +20 10059366 . C . . END=10059376 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:29:81:27:0,81,827 +20 10059377 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:90:31:0,90,1350 +20 10059378 . A . . END=10059379 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10059380 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1350 +20 10059381 . C . . END=10059387 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10059388 . G . . END=10059395 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1350 +20 10059396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:89:34:0,89,1051 +20 10059397 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:34:0,99,1485 +20 10059398 . A . . END=10059400 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:96:33:0,96,1440 +20 10059401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:87:34:0,87,1030 +20 10059402 . G . . END=10059412 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:34:0,93,1048 +20 10059413 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:88:35:0,88,1061 +20 10059414 . T . . END=10059428 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:30:0,90,933 +20 10059429 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:83:34:0,83,926 +20 10059430 . C . . END=10059435 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,102,1051 +20 10059436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:36:0,96,1079 +20 10059437 . C . . END=10059442 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:36:0,99,1075 +20 10059443 . T . . END=10059449 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:35:0,96,1440 +20 10059450 . G . . END=10059454 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,99,1071 +20 10059455 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:96:32:0,96,945 +20 10059456 . C . . END=10059461 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:36:0,105,998 +20 10059462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:91:36:0,91,1086 +20 10059463 . G . . END=10059477 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:35:0,105,1076 +20 10059478 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:96:37:0,96,1071 +20 10059479 . T . . END=10059484 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:37:0,111,1134 +20 10059485 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:80:38:0,80,1050 +20 10059486 . T . . END=10059490 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:36:0,99,1110 +20 10059491 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:38:0,96,1054 +20 10059492 . G . . END=10059497 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:37:0,103,1113 +20 10059498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:91:40:0,91,1157 +20 10059499 . A . . END=10059507 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:37:0,109,1135 +20 10059508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:93:40:0,93,1167 +20 10059509 . A . . END=10059542 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:35:0,99,1133 +20 10059543 . A . . END=10059557 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:90:32:0,90,1350 +20 10059558 . G . . END=10059560 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:34:0,99,1485 +20 10059561 . G . . END=10059563 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:93:33:0,93,985 +20 10059564 . G . . END=10059568 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,102,1070 +20 10059569 . C . . END=10059573 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:34:0,90,1032 +20 10059574 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:84:34:0,84,976 +20 10059575 . C . . END=10059582 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:33:0,90,1350 +20 10059583 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,102,1530 +20 10059584 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:97:36:0,97,1098 +20 10059585 . C . . END=10059603 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:34:0,99,1043 +20 10059604 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:74:36:0,74,1023 +20 10059605 . C . . END=10059644 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:36:0,99,1135 +20 10059645 . T . . END=10059646 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:38:0,96,1440 +20 10059647 . C . . END=10059652 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10059653 . G . . END=10059655 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:96:33:0,96,1440 +20 10059656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:88:33:0,88,1012 +20 10059657 . G . . END=10059672 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:93:31:0,93,1010 +20 10059673 . T . . END=10059693 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:81:29:0,81,908 +20 10059694 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:78:30:0,78,931 +20 10059695 . G . . END=10059696 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:30:0,87,1305 +20 10059697 . A . . END=10059700 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,1350 +20 10059701 . T . . END=10059708 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10059709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:90:31:0,90,1350 +20 10059710 . G . . END=10059712 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10059713 . C . . END=10059724 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:32:0,90,1034 +20 10059725 . G . . END=10059736 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:81:32:0,81,1215 +20 10059737 . G . . END=10059739 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:32:0,90,1350 +20 10059740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:87:31:0,87,1305 +20 10059741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:76:32:0,76,992 +20 10059742 . T . . END=10059745 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,1350 +20 10059746 . A . . END=10059748 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:81:31:0,81,1215 +20 10059749 . C . . END=10059754 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:75:30:0,75,1125 +20 10059755 . G . . END=10059756 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:81:31:0,81,1215 +20 10059757 . T . . END=10059774 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:75:25:0,75,810 +20 10059775 . T . . END=10059776 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:27:62:27:0,62,810 +20 10059777 . G . . END=10059778 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:28:75:27:0,75,1125 +20 10059779 . G . . END=10059782 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:28:0,81,1215 +20 10059783 . T . . END=10059786 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:93:32:0,93,1395 +20 10059787 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:80:33:0,80,967 +20 10059788 . A . . END=10059798 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:93:32:0,93,1012 +20 10059799 . C . . END=10059814 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:33:0,99,999 +20 10059815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:36:0,96,1019 +20 10059816 . C . . END=10059843 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:35:0,103,1085 +20 10059844 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:95:40:0,95,1170 +20 10059845 . A . . END=10059853 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:38:0,102,1530 +20 10059854 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:85:38:0,85,1087 +20 10059855 . G . . END=10059856 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:37:0,99,1485 +20 10059857 . T . . END=10059859 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:95:37:0,95,1090 +20 10059860 . C . . END=10059876 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:34:0,99,1117 +20 10059877 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:90:36:0,90,1048 +20 10059878 . C . . END=10059880 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,99,1485 +20 10059881 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:96:35:0,96,1440 +20 10059882 . T . . END=10059899 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,99,1131 +20 10059900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:88:39:0,88,1169 +20 10059901 . G . . END=10059917 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,102,1113 +20 10059918 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:96:38:0,96,1182 +20 10059919 . A . . END=10060111 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:37:0,99,1097 +20 10060112 . A . . END=10060113 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:96:37:0,96,1440 +20 10060114 . C . . END=10060127 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:35:0,99,1485 +20 10060128 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:74:34:0,74,1045 +20 10060129 . T . . END=10060130 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:94:33:0,94,934 +20 10060131 . T . . END=10060137 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:33:0,99,1042 +20 10060138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:92:36:0,92,1060 +20 10060139 . A . . END=10060149 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:37:0,100,1043 +20 10060150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:81:40:0,81,1138 +20 10060151 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:92:38:0,92,1085 +20 10060152 . G . . END=10060222 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:36:0,99,1079 +20 10060223 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:95:43:0,95,1264 +20 10060224 . A . . END=10060410 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:36:0,102,1272 +20 10060411 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:79:36:0,79,1033 +20 10060412 . G . . END=10060422 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,102,1530 +20 10060423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:85:35:0,85,1083 +20 10060424 . A . . END=10060438 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:35:0,99,1485 +20 10060439 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:90:40:0,90,1185 +20 10060440 . C . . END=10060448 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:39:0,111,1665 +20 10060449 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:98:42:0,98,1236 +20 10060450 . A . . END=10060453 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:41:0,117,1755 +20 10060454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:72:40:0,72,1148 +20 10060455 . C . . END=10060461 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:37:0,111,1174 +20 10060462 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:90:41:0,90,1142 +20 10060463 . T . . END=10060468 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:39:0,105,1170 +20 10060469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:87:40:0,87,1136 +20 10060470 . T . . END=10060868 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:51:99:39:0,105,1177 +20 10060869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:49:91:49:0,91,1347 +20 10060870 . A . . END=10061081 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:55:99:44:0,117,1715 +20 10061082 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:45:95:45:0,95,1314 +20 10061083 . A . . END=10061095 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:44:99:40:0,99,1485 +20 10061096 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:96:41:0,96,1440 +20 10061097 . C . . END=10061100 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:39:0,99,1485 +20 10061101 . G . . END=10061103 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:95:36:0,95,1085 +20 10061104 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:86:36:0,86,1125 +20 10061105 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10061106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:93:36:0,93,1070 +20 10061107 . A . . END=10061110 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:37:0,108,1133 +20 10061111 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:91:38:0,91,1130 +20 10061112 . A . . END=10061125 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:39:0,108,1161 +20 10061126 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:87:42:0,87,1193 +20 10061127 . C . . END=10061191 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:47:99:40:0,99,1289 +20 10061192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:47:97:47:0,97,1441 +20 10061193 . A . . END=10061246 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:45:99:38:0,105,1357 +20 10061247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:98:39:0,98,1160 +20 10061248 . C . . END=10061251 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:37:0,99,1485 +20 10061252 . A . . END=10061257 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:96:37:0,96,1440 +20 10061258 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:88:35:0,88,1059 +20 10061259 . T . . END=10061262 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:34:0,99,1485 +20 10061263 . A . . END=10061274 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:31:0,93,954 +20 10061275 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:76:33:0,76,946 +20 10061276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:33:0,93,1395 +20 10061277 . A . . END=10061286 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:81:31:0,81,1215 +20 10061287 . A . . END=10061288 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:93:31:0,93,967 +20 10061289 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:78:30:0,78,907 +20 10061290 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:93:32:0,93,1395 +20 10061291 . C . . END=10061293 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,99,1485 +20 10061294 . C . . END=10061297 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:92:35:0,92,1112 +20 10061298 . T . . END=10061300 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:39:0,99,1485 +20 10061301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:87:37:0,87,1103 +20 10061302 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:98:38:0,98,1140 +20 10061303 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:39:0,105,1575 +20 10061304 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:89:38:0,89,1163 +20 10061305 . G . . END=10061306 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:37:0,102,1530 +20 10061307 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:36:0,96,1090 +20 10061308 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:77:38:0,77,1077 +20 10061309 . A . . END=10061504 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:35:0,100,1071 +20 10061505 . T . . END=10061506 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:96:37:0,96,1440 +20 10061507 . T . . END=10061511 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:38:0,99,1485 +20 10061512 . G . . END=10061527 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:90:33:0,90,1350 +20 10061528 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:80:32:0,80,930 +20 10061529 . C . . END=10061534 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:93:33:0,93,1395 +20 10061535 . C . . END=10061545 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,99,1056 +20 10061546 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:95:37:0,95,1119 +20 10061547 . C . . END=10061556 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:35:0,102,1530 +20 10061557 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:80:36:0,80,1106 +20 10061558 . C . . END=10061569 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,99,1485 +20 10061570 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:36:0,96,1440 +20 10061571 . A . . END=10061572 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:36:0,99,1485 +20 10061573 . A . . END=10061578 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:93:35:0,93,1395 +20 10061579 . T C, . . BaseQRankSum=0.610;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=118800,33;ReadPosRankSum=0.844 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:17,15,0:32:99:.:391,0,454,442,499,942:7,10,7,8 +20 10061580 . C . . END=10061590 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:31:0,90,1350 +20 10061591 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:75:32:0,75,1004 +20 10061592 . G . . END=10061594 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:93:31:0,93,945 +20 10061595 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:68:31:0,68,915 +20 10061596 . C . . END=10061599 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:90:31:0,90,1350 +20 10061600 . C . . END=10061603 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10061604 . C . . END=10061607 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:96:33:0,96,1440 +20 10061608 . G . . END=10061609 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:33:0,99,1029 +20 10061610 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:84:34:0,84,1011 +20 10061611 . C . . END=10061616 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:33:0,99,1078 +20 10061617 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:82:33:0,82,1016 +20 10061618 . A . . END=10061621 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,99,1065 +20 10061622 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:87:34:0,87,1061 +20 10061623 . G . . END=10061625 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:96:35:0,96,1440 +20 10061626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:99:38:0,99,1485 +20 10061627 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:80:37:0,80,1080 +20 10061628 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:37:0,99,1485 +20 10061629 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:92:36:0,92,1035 +20 10061630 . C . . END=10061631 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,99,1485 +20 10061632 . C T, . . DP=81;ExcessHet=3.01;RAW_MQandDP=122400,34 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:0,34,0:34:99:.:1106,102,0,1106,102,1106:0,0,18,16 +20 10061633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:48:35:0,48,999 +20 10061634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:96:35:0,96,1440 +20 10061635 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:87:35:0,87,1076 +20 10061636 . G . . END=10061637 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:93:34:0,93,1395 +20 10061638 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:86:34:0,86,1030 +20 10061639 . T . . END=10061644 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:93:33:0,93,1395 +20 10061645 . A . . END=10061659 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:81:30:0,81,992 +20 10061660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:78:30:0,78,898 +20 10061661 . A . . END=10061665 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:30:81:29:0,81,1215 +20 10061666 . C . . END=10061667 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:78:31:0,78,1170 +20 10061668 . T . . END=10061673 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:81:30:0,81,1215 +20 10061674 . A . . END=10061684 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:32:0,90,1350 +20 10061685 . A . . END=10061691 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:84:32:0,84,1260 +20 10061692 . C . . END=10061694 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10061695 . T . . END=10061699 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:84:31:0,84,997 +20 10061700 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:32:0,90,1350 +20 10061701 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:87:32:0,87,1305 +20 10061702 . C . . END=10061703 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10061704 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:87:33:0,87,1305 +20 10061705 . A . . END=10061710 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:90:33:0,90,1350 +20 10061711 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:65:32:0,65,906 +20 10061712 . A . . END=10061722 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:30:0,90,942 +20 10061723 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:88:33:0,88,987 +20 10061724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:96:32:0,96,942 +20 10061725 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:88:33:0,88,982 +20 10061726 . G . . END=10061728 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:99:34:0,99,1485 +20 10061729 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:91:34:0,91,1031 +20 10061730 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:35:0,99,1485 +20 10061731 . G . . END=10061739 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:90:33:0,90,1047 +20 10061740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:82:31:0,82,920 +20 10061741 . G . . END=10061750 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:32:90:31:0,90,914 +20 10061751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:74:34:0,74,1007 +20 10061752 . A . . END=10061759 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:99:35:0,99,1485 +20 10061760 . A . . END=10061767 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:93:34:0,93,1395 +20 10061768 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:69:35:0,69,1030 +20 10061769 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:80:34:0,80,1060 +20 10061770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:34:96:34:0,96,1440 +20 10061771 . A . . END=10061782 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:99:34:0,99,1085 +20 10061783 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:94:35:0,94,1097 +20 10061784 . C . . END=10061793 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:35:0,100,1051 +20 10061794 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:38:98:38:0,98,1155 +20 10061795 . A . . END=10061801 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:38:0,106,1171 +20 10061802 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:95:43:0,95,1247 +20 10061803 . T . . END=10061838 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:39:0,104,1122 +20 10061839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:91:41:0,91,1187 +20 10061840 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:88:40:0,88,1124 +20 10061841 . G . . END=10061849 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:37:0,100,1174 +20 10061850 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:36:90:36:0,90,1114 +20 10061851 . C . . END=10061976 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:99:36:0,100,1133 +20 10061977 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:94:41:0,94,1140 +20 10061978 . A . . END=10061981 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:43:0,117,1299 +20 10061982 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:95:43:0,95,1236 +20 10061983 . C . . END=10061992 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:41:0,106,1218 +20 10061993 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:88:41:0,88,1130 +20 10061994 . T . . END=10062011 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:45:99:42:0,116,1309 +20 10062012 . A . . END=10062013 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:96:41:0,96,1252 +20 10062014 . T . . END=10062022 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:41:99:40:0,114,1268 +20 10062023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:96:42:0,96,1280 +20 10062024 . C . . END=10062150 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:54:99:42:0,99,1255 +20 10062151 . A G, . . BaseQRankSum=-1.656e+00;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=212400,59;ReadPosRankSum=-6.130e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:38,19,0:57:99:.:406,0,1012,520,1069,1588:18,20,9,10 +20 10062152 . T . . END=10062272 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:57:99:48:0,120,1800 +20 10062273 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:49:96:49:0,96,1419 +20 10062274 . C . . END=10062328 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:46:99:42:0,101,1340 +20 10062329 . T C, . . BaseQRankSum=-2.037e+00;ClippingRankSum=0.00;DP=88;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=147600,41;ReadPosRankSum=0.337 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:15,25,0:40:99:.:620,0,364,665,438,1103:4,11,13,12 +20 10062330 . T . . END=10062400 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:46:99:39:0,107,1300 +20 10062401 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:44:95:44:0,95,1333 +20 10062402 . C . . END=10062440 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:99:41:0,100,1278 +20 10062441 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:43:97:43:0,97,1236 +20 10062442 . C . . END=10062530 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:47:99:41:0,104,1224 +20 10062531 . A G, . . BaseQRankSum=-2.520e-01;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=0.447 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:29,15,0:44:99:.:313,0,725,400,770,1169:12,17,4,11 +20 10062532 . T . . END=10062695 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:46:99:41:0,111,1297 +20 10062696 . T C, . . BaseQRankSum=0.953;ClippingRankSum=0.00;DP=94;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=-1.579e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:18,27,0:45:99:.:668,0,404,722,484,1205:11,7,16,11 +20 10062697 . C . . END=10062772 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:45:99:39:0,102,1482 +20 10062773 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:93:40:0,93,1197 +20 10062774 . C . . END=10062873 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:42:99:37:0,99,1206 +20 10062874 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:40:91:40:0,91,1199 +20 10062875 . T . . END=10062884 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:39:99:38:0,105,1575 +20 10062885 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:81:37:0,81,1060 +20 10062886 . A . . END=10062901 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:99:35:0,102,1043 +20 10062902 . A . . END=10062907 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:37:90:36:0,90,1350 +20 10062908 . G . . END=10062911 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:35:81:34:0,81,1215 +20 10062912 . A . . END=10062920 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:33:72:31:0,72,1080 +20 10062921 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:69:31:0,69,1035 +20 10062922 . T C, . . DP=78;ExcessHet=3.01;RAW_MQandDP=111600,31 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:47:0,99,1485,99,1485,1485 ./.:0,31,0:31:92:.:917,92,0,917,92,917:0,0,18,13 +20 10062923 . G . . END=10062924 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:66:31:0,66,990 +20 10062925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:57:31:0,57,855 +20 10062926 . A . . END=10062927 GT:DP:GQ:MIN_DP:PL ./.:76:99:47:0,99,1485 ./.:31:51:31:0,51,765 +20 10062928 . T . . . GT:DP:GQ:MIN_DP:PL ./.:47:90:46:0,90,1350 ./.:31:51:31:0,51,765 +20 10062929 . C . . . GT:DP:GQ:MIN_DP:PL ./.:47:90:46:0,90,1350 ./.:31:48:31:0,48,720 +20 10062930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:81:48:0,81,1215 ./.:31:45:30:0,45,675 +20 10062931 . G . . . GT:DP:GQ:MIN_DP:PL ./.:47:78:47:0,78,1170 ./.:31:45:30:0,45,675 +20 10062932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:81:47:0,81,1215 ./.:30:36:30:0,36,540 +20 10062933 . C . . END=10062934 GT:DP:GQ:MIN_DP:PL ./.:48:81:47:0,81,1215 ./.:31:33:30:0,33,495 +20 10062935 . CAAA CAA,C,CA,CAAAA, . . BaseQRankSum=1.34;ClippingRankSum=0.00;DP=111;ExcessHet=3.01;MQRankSum=1.71;RAW_MQandDP=350168,111;ReadPosRankSum=-8.900e-02 GT:AD:DP:GQ:PL:SB ./.:5,4,2,2,10,0:23:16:130,115,505,219,628,1823,163,576,1171,1044,0,16,158,82,101,243,608,986,887,171,888:2,3,9,9 ./.:13,10,0,0,0,0:23:99:138,0,197,177,227,404,177,227,404,404,177,227,404,404,404,177,227,404,404,404,404:7,6,8,2 +20 10062936 . A *, . . DP=111 GT:AD:DP:GQ:PL:SB ./.:5,4,0:23:16:130,115,505,243,608,888:2,3,9,9 ./.:13,10,0:23:99:138,0,197,177,227,404:7,6,8,2 +20 10062937 . A *, . . DP=120 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:5,4,0:23:16:.:130,115,505,243,608,888:2,3,9,9 ./.:.:41:0:41:0,0,653,0,653,653 +20 10062938 . A *, . . DP=119 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:5,4,0:23:16:.:130,115,505,243,608,888:2,3,9,9 ./.:.:41:99:40:0,99,1272,99,1272,1272 +20 10062939 . A . . END=10062954 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:41:99:40:0,99,1272 +20 10062955 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:40:89:40:0,89,1208 +20 10062956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:80:69:0,80,2241 ./.:40:99:37:0,100,1052 +20 10062957 . C . . END=10062991 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:37:0,100,1052 +20 10062992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:95:39:0,95,1170 +20 10062993 . G . . END=10062999 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:41:0,101,1176 +20 10063000 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:88:42:0,88,1199 +20 10063001 . T . . END=10063018 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:44:99:41:0,106,1217 +20 10063019 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:44:80:44:0,80,1244 +20 10063020 . C . . END=10063087 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:43:99:40:0,102,1234 +20 10063088 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:89:39:0,89,1115 +20 10063089 . T . . END=10063090 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,99,1147 +20 10063091 . C . . END=10063101 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:34:0,90,1080 +20 10063102 . T . . END=10063104 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:31:0,87,1305 +20 10063105 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:79:33:0,79,979 +20 10063106 . A . . END=10063113 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:84:32:0,84,1260 +20 10063114 . T . . END=10063116 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,1021 +20 10063118 . C . . END=10063119 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,102,1530 +20 10063120 . C . . END=10063122 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:34:0,96,1440 +20 10063123 . T . . END=10063125 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1305 +20 10063126 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:75:36:0,75,1095 +20 10063127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:90:36:0,90,1350 +20 10063128 . A . . END=10063130 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:87:34:0,87,1305 +20 10063131 . C . . END=10063132 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:35:0,90,1350 +20 10063133 . G . . END=10063146 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:30:0,81,969 +20 10063147 . A . . END=10063163 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,982 +20 10063164 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:87:30:0,87,1305 +20 10063165 . G . . END=10063168 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10063169 . G . . END=10063170 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:33:0,99,1025 +20 10063171 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:85:34:0,85,1008 +20 10063172 . G . . END=10063174 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,102,1064 +20 10063175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:94:35:0,94,1073 +20 10063176 . C . . END=10063179 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,102,1061 +20 10063180 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:86:35:0,86,1076 +20 10063181 . A . . END=10063182 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,102,1104 +20 10063183 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:88:35:0,88,1078 +20 10063184 . A . . END=10063199 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:97:39:0,97,1126 +20 10063201 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:89:39:0,89,1177 +20 10063202 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1153 +20 10063203 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:38:0,99,1485 +20 10063204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:90:38:0,90,1088 +20 10063205 . A . . END=10063206 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:41:0,108,1620 +20 10063207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:87:40:0,87,1137 +20 10063208 . G . . END=10063269 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:38:0,99,1151 +20 10063270 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:98:39:0,98,1139 +20 10063271 . T . . END=10063299 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:33:0,99,1012 +20 10063300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,994 +20 10063301 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:99:33:0,99,1033 +20 10063302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:96:32:0,96,1008 +20 10063303 . A . . END=10063309 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1065 +20 10063310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:96:33:0,96,1440 +20 10063311 . C . . END=10063351 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:35:0,99,1114 +20 10063352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:94:40:0,94,1230 +20 10063353 . T . . END=10063357 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:37:0,99,1485 +20 10063358 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:91:36:0,91,1062 +20 10063359 . T . . END=10063360 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,99,1485 +20 10063361 . G . . END=10063366 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:93:33:0,93,1395 +20 10063367 . T . . END=10063369 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:82:34:0,82,1010 +20 10063370 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:79:35:0,79,1011 +20 10063371 . T . . END=10063374 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:33:0,87,1305 +20 10063375 . A . . END=10063376 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:34:0,90,1062 +20 10063377 . T . . END=10063390 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:84:29:0,84,952 +20 10063391 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:54:29:0,54,870 +20 10063392 . T . . END=10063394 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:71:29:0,71,858 +20 10063395 . A . . END=10063397 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:84:29:0,84,1260 +20 10063398 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:70:30:0,70,858 +20 10063399 . G . . END=10063401 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:84:29:0,84,1260 +20 10063402 . T . . END=10063403 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10063404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:69:32:0,69,959 +20 10063405 . G . . END=10063407 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063408 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,982 +20 10063409 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:93:33:0,93,1395 +20 10063410 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:86:33:0,86,998 +20 10063411 . G . . END=10063417 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10063418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,918 +20 10063419 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063420 . C . . END=10063422 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:34:0,90,1350 +20 10063423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1063 +20 10063424 . C . . END=10063425 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1350 +20 10063426 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:88:33:0,88,1044 +20 10063427 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:75:32:0,75,981 +20 10063428 . T . . END=10063432 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10063433 . T . . END=10063435 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,942 +20 10063436 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:78:32:0,78,995 +20 10063437 . T . . END=10063442 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:31:0,81,939 +20 10063443 . A . . END=10063444 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:78:30:0,78,1170 +20 10063445 . C . . END=10063452 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:31:0,80,957 +20 10063453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063454 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:57:35:0,57,993 +20 10063455 . T . . END=10063457 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:35:0,96,1440 +20 10063458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:78:35:0,78,1079 +20 10063459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10063460 . T . . END=10063463 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1072 +20 10063464 . A . . END=10063465 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10063466 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063467 . C . . END=10063471 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,99,1485 +20 10063472 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063473 . C . . END=10063480 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:35:0,99,1485 +20 10063481 . A . . END=10063494 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:30:0,90,981 +20 10063495 . A . . END=10063500 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:33:0,99,1048 +20 10063501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:96:32:0,96,1014 +20 10063502 . T . . END=10063513 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:34:0,99,1112 +20 10063514 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:96:41:0,96,1242 +20 10063515 . A . . END=10063525 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:40:0,100,1227 +20 10063526 . T . . END=10063527 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:93:42:0,93,1209 +20 10063528 . T . . END=10063549 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:99:41:0,110,1259 +20 10063550 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:91:40:0,91,1167 +20 10063551 . T . . END=10063584 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:38:0,108,1125 +20 10063585 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:79:42:0,79,1193 +20 10063586 . A . . END=10063666 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:36:0,99,1136 +20 10063667 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:96:37:0,96,1086 +20 10063668 . C . . END=10063671 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:35:0,99,1485 +20 10063672 . T . . END=10063674 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:96:34:0,96,1440 +20 10063675 . C . . END=10063676 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:94:35:0,94,1066 +20 10063678 . G . . END=10063679 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:35:0,99,1485 +20 10063680 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:88:35:0,88,1061 +20 10063681 . C . . END=10063723 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:34:0,101,1079 +20 10063724 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:90:41:0,90,1244 +20 10063725 . A . . END=10063730 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:38:0,105,1575 +20 10063731 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:96:38:0,96,1091 +20 10063732 . C . . END=10063737 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:34:0,99,1485 +20 10063738 . C . . END=10063741 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:93:35:0,93,1395 +20 10063742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:86:34:0,86,1032 +20 10063743 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10063744 . G . . END=10063745 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063746 . A . . END=10063755 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1350 +20 10063756 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10063757 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:76:33:0,76,955 +20 10063758 . T . . END=10063759 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:87:32:0,87,1305 +20 10063760 . G . . END=10063763 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10063764 . T . . END=10063768 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:30:0,81,1215 +20 10063769 . G . . END=10063789 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:27:72:25:0,72,773 +20 10063790 . C . . END=10063792 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,1215 +20 10063793 . C . . END=10063794 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:72:29:0,72,843 +20 10063795 . T . . END=10063797 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,1260 +20 10063798 . A . . END=10063800 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1057 +20 10063801 . A . . END=10063803 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:99:34:0,99,1485 +20 10063804 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:72:34:0,72,944 +20 10063805 . A . . END=10063808 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:33:0,99,1040 +20 10063809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:83:33:0,83,989 +20 10063810 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:96:34:0,96,1440 +20 10063811 . G . . END=10063823 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:34:0,99,1485 +20 10063824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:90:41:0,90,1243 +20 10063825 . T . . END=10064065 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:36:0,99,1122 +20 10064066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:96:38:0,96,1204 +20 10064067 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:87:38:0,87,1119 +20 10064068 . A . . END=10064090 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:37:0,102,1179 +20 10064091 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:92:41:0,92,1137 +20 10064092 . A . . END=10064096 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:39:0,111,1665 +20 10064097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:95:40:0,95,1182 +20 10064098 . A . . END=10064100 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:40:0,114,1710 +20 10064101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:94:40:0,94,1226 +20 10064102 . T . . END=10064103 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,111,1167 +20 10064104 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:90:39:0,90,1157 +20 10064105 . A . . END=10064106 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:99:39:0,109,1180 +20 10064107 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:87:40:0,87,1132 +20 10064108 . T . . END=10064114 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:43:99:40:0,101,1300 +20 10064115 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:42:88:42:0,88,1226 +20 10064116 . G . . END=10064135 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:41:99:37:0,102,1123 +20 10064136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:93:36:0,93,1042 +20 10064137 . C . . END=10064260 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:49:99:39:0,114,1203 +20 10064261 . T G, . . BaseQRankSum=0.993;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=172800,48;ReadPosRankSum=-1.260e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:22,23,0:45:99:.:572,0,499,638,568,1205:13,9,15,8 +20 10064262 . A . . END=10064305 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:52:99:49:0,120,1800 +20 10064306 . T A, . . DP=90;ExcessHet=3.01;RAW_MQandDP=172800,48 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:0,48,0:48:99:.:1511,144,0,1511,144,1511:0,0,27,21 +20 10064307 . A . . END=10064450 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:50:99:46:0,120,1800 +20 10064451 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:48:98:48:0,98,1355 +20 10064452 . T . . END=10064528 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:41:0,108,1310 +20 10064529 . A G, . . DP=83;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:0,39,0:39:99:.:1049,115,0,1049,115,1049:0,0,22,17 +20 10064530 . G . . END=10064770 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:50:99:38:0,99,1209 +20 10064771 . C . . END=10064781 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:90:33:0,90,1350 +20 10064782 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:87:32:0,87,1305 +20 10064783 . A . . END=10064800 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:32:0,90,911 +20 10064801 . C . . END=10064802 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:83:33:0,83,982 +20 10064803 . A . . END=10064806 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:93:32:0,93,1395 +20 10064807 . C . . END=10064810 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:99:34:0,99,1485 +20 10064811 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:91:36:0,91,1106 +20 10064812 . G . . END=10065310 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:47:99:35:0,99,1101 +20 10065311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:84:39:0,84,1185 +20 10065312 . T . . END=10065323 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,99,1117 +20 10065324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:79:37:0,79,1074 +20 10065325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:84:38:0,84,1106 +20 10065326 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1136 +20 10065327 . A . . END=10065328 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:38:0,99,1485 +20 10065329 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:92:39:0,92,1136 +20 10065330 . T . . END=10065332 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:37:0,99,1162 +20 10065333 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:93:38:0,93,1126 +20 10065334 . G . . END=10065336 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:37:0,101,1055 +20 10065337 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:86:37:0,86,1060 +20 10065338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:37:0,100,1130 +20 10065339 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:65:37:0,65,1000 +20 10065340 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:80:37:0,80,1001 +20 10065341 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065342 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:65:37:0,65,1021 +20 10065343 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065344 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:77:37:0,77,1084 +20 10065345 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:93:37:0,93,1395 +20 10065346 . C . . END=10065349 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:73:33:0,73,956 +20 10065350 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:87:34:0,87,1305 +20 10065351 . A . . END=10065353 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:74:33:0,74,993 +20 10065354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:87:33:0,87,1305 +20 10065355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:68:33:0,68,984 +20 10065356 . A . . END=10065358 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:32:0,80,942 +20 10065359 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:69:32:0,69,952 +20 10065360 . C . . END=10065361 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:87:31:0,87,1305 +20 10065362 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:71:32:0,71,1002 +20 10065363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:80:32:0,80,960 +20 10065364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:72:34:0,72,1008 +20 10065365 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:47:33:0,47,920 +20 10065366 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:68:33:0,68,983 +20 10065367 . T . . END=10065372 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065373 . C . . END=10065382 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:84:32:0,84,1010 +20 10065383 . T G, . . BaseQRankSum=-4.436e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=122400,34;ReadPosRankSum=-7.660e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:42:0,105,1575,105,1575,1575 ./.:15,16,0:31:99:.:342,0,417,387,464,851:9,6,9,7 +20 10065384 . T . . END=10065393 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:30:0,81,1215 +20 10065394 . C . . END=10065400 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:90:33:0,90,1044 +20 10065401 . T . . END=10065433 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:35:0,99,1132 +20 10065434 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:98:38:0,98,1060 +20 10065435 . A . . END=10065455 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:39:99:36:0,103,1081 +20 10065456 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:40:92:40:0,92,1228 +20 10065457 . G . . END=10065459 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:99:36:0,102,1530 +20 10065460 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:38:84:38:0,84,1132 +20 10065461 . C . . END=10065470 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:35:0,102,1530 +20 10065471 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:89:35:0,89,1063 +20 10065472 . T . . END=10065480 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,100,1151 +20 10065481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1132 +20 10065482 . T . . END=10065483 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,108,1153 +20 10065484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:92:36:0,92,1141 +20 10065485 . T . . END=10065486 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,108,1163 +20 10065487 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1147 +20 10065488 . T . . END=10065490 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,107,1099 +20 10065491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:97:36:0,97,1126 +20 10065492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:99:36:0,105,1575 +20 10065493 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:86:36:0,86,1078 +20 10065494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:32:35:0,32,925 +20 10065495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:81:36:0,81,1035 +20 10065496 . C . . END=10065502 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:99:36:0,99,1141 +20 10065503 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:37:90:37:0,90,1350 +20 10065504 . A . . END=10065505 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:88:36:0,88,1059 +20 10065506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:90:36:0,90,1350 +20 10065507 . T . . END=10065509 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:36:84:35:0,84,1260 +20 10065510 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:35:78:35:0,78,1016 +20 10065511 . G . . END=10065514 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:84:31:0,84,1260 +20 10065515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,893 +20 10065516 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065517 . T C, . . BaseQRankSum=0.690;ClippingRankSum=0.00;DP=73;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=111600,31;ReadPosRankSum=-1.828e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:70:99:42:.:.:0,105,1575,105,1575,1575 ./.:18,12,0:30:99:.:0|1:10065517_T_C:273,0,706,327,741,1068:9,9,4,8 +20 10065518 . T . . END=10065520 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065521 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:32:0,84,1010 +20 10065522 . T . . END=10065524 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10065525 . G A, . . BaseQRankSum=0.814;ClippingRankSum=0.00;DP=70;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=100800,28;ReadPosRankSum=0.551 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:70:99:42:.:.:0,105,1575,105,1575,1575 ./.:10,17,0:27:99:.:1|0:10065517_T_C:481,0,391,514,442,956:4,6,9,8 +20 10065526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065527 . A . . END=10065533 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:31:0,81,1215 +20 10065534 . C . . END=10065543 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:72:29:0,72,1080 +20 10065544 . A . . END=10065547 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,1215 +20 10065548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:65:28:0,65,775 +20 10065549 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:54:28:0,54,805 +20 10065550 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:69:29:0,69,855 +20 10065551 . T . . END=10065562 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:28:0,81,1215 +20 10065563 . T . . END=10065564 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:71:28:0,71,865 +20 10065565 . T . . END=10065572 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:81:28:0,81,875 +20 10065573 . A . . END=10065575 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:78:29:0,78,1170 +20 10065576 . C . . END=10065580 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:84:32:0,84,1260 +20 10065581 . A . . END=10065584 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:32:0,90,1350 +20 10065585 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:76:31:0,76,882 +20 10065586 . C . . END=10065604 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:82:29:0,82,948 +20 10065605 . A . . END=10065614 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,951 +20 10065615 . G . . END=10065617 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:61:31:0,61,902 +20 10065618 . T . . END=10065619 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:93:32:0,93,1395 +20 10065620 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:46:32:0,46,875 +20 10065621 . T . . END=10065623 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,978 +20 10065624 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,937 +20 10065625 . A . . END=10065626 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,958 +20 10065627 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:82:31:0,82,926 +20 10065628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:93:31:0,93,972 +20 10065629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,898 +20 10065630 . A . . END=10065635 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:30:0,90,948 +20 10065636 . A . . END=10065637 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:99:33:0,99,1035 +20 10065638 . T . . END=10065644 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:33:90:33:0,90,1350 +20 10065645 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:34:85:34:0,85,993 +20 10065646 . C . . END=10065652 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,1350 +20 10065653 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:87:29:0,87,901 +20 10065654 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:32:0,90,1350 +20 10065655 . A . . END=10065663 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:84:29:0,84,932 +20 10065664 . C . . END=10065669 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:90:31:0,90,990 +20 10065670 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:82:32:0,82,965 +20 10065671 . T . . END=10065676 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:93:32:0,93,1395 +20 10065677 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:70:32:0,70,930 +20 10065678 . T . . END=10065683 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:90:30:0,90,912 +20 10065684 . T . . END=10065686 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:81:29:0,81,1215 +20 10065687 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:31:78:31:0,78,1170 +20 10065688 . T . . END=10065694 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:81:30:0,81,1017 +20 10065695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:78:30:0,78,1170 +20 10065696 . G . . END=10065698 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:30:81:30:0,81,1215 +20 10065699 . T . . END=10065708 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:29:72:27:0,72,836 +20 10065709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:61:26:0,61,769 +20 10065710 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:72:26:0,72,1080 +20 10065711 . A . . END=10065715 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:64:24:0,64,792 +20 10065716 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:27:72:27:0,72,1080 +20 10065717 . C . . END=10065722 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:66:25:0,66,779 +20 10065723 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:46:26:0,46,780 +20 10065724 . C . . END=10065727 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:26:66:24:0,66,990 +20 10065728 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:26:24:0,26,583 +20 10065729 . T . . END=10065737 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:61:21:0,61,641 +20 10065738 . G . . END=10065739 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:55:24:0,55,665 +20 10065740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:66:25:0,66,990 +20 10065741 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:25:58:25:0,58,735 +20 10065742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:39:24:0,39,649 +20 10065743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:66:23:0,66,990 +20 10065744 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:52:23:0,52,661 +20 10065745 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:60:24:0,60,900 +20 10065746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:24:55:24:0,55,675 +20 10065747 . G . . END=10065748 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:57:23:0,57,855 +20 10065749 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:51:22:0,51,635 +20 10065750 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:60:22:0,60,900 +20 10065751 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:58:23:0,58,668 +20 10065752 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:60:23:0,60,900 +20 10065753 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:58:23:0,58,687 +20 10065754 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:49:22:0,49,624 +20 10065755 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:16:22:0,16,531 +20 10065756 . T . . END=10065758 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:22:60:20:0,60,637 +20 10065759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:52:23:0,52,677 +20 10065760 . T . . END=10065761 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:23:66:23:0,66,990 +20 10065762 . T . . END=10065772 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:28:70:24:0,70,754 +20 10065773 . A . . END=10065774 GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:60:31:0,60,900 +20 10065775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:42:0,105,1575 ./.:32:54:32:0,54,810 +20 10065776 . C . . . GT:DP:GQ:MIN_DP:PL ./.:49:76:49:0,76,1707 ./.:34:32:34:0,32,849 +20 10065777 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:94:48:0,94,1738 ./.:35:39:35:0,39,585 +20 10065778 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:48:0,111,1665 ./.:42:42:42:0,42,630 +20 10065779 . G GTT,GTTT, . . DP=78;ExcessHet=3.01;RAW_MQandDP=91481,26 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:52:0:52:0,0,1215,0,1215,1215,0,1215,1215,1215 ./.:0,7,6,0:13:50:.:687,131,50,154,0,87,494,126,151,432:0,0,7,6 +20 10065780 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:38:61:0,38,2046 ./.:46:0:46:0,0,893 +20 10065781 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:75:71:0,75,1125 ./.:45:60:44:0,60,900 +20 10065782 . T . . END=10065802 GT:DP:GQ:MIN_DP:PL ./.:82:99:65:0,108,1620 ./.:45:60:44:0,60,900 +20 10065803 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:81:59:0,81,2051 ./.:30:0:28:0,0,0 +20 10065804 . C . . END=10065807 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:0:28:0,0,0 +20 10065808 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:58:31:0,58,735 +20 10065809 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:63:31:0,63,945 +20 10065810 . A . . END=10065812 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:0:24:0,0,278 +20 10065813 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:22:4:22:0,4,493 +20 10065814 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:24:0:24:0,0,528 +20 10065815 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:24:14:24:0,14,587 +20 10065816 . G . . END=10065817 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:0:25:0,0,483 +20 10065818 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:22:19:22:0,19,562 +20 10065819 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:25:0:25:0,0,585 +20 10065820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:24:38:24:0,38,676 +20 10065821 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:25:0:25:0,0,547 +20 10065822 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:24:38:24:0,38,657 +20 10065823 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:25:0:25:0,0,568 +20 10065824 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:47:26:0,47,733 +20 10065825 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:25:42:25:0,42,725 +20 10065826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:25:54:25:0,54,810 +20 10065827 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:47:27:0,47,814 +20 10065828 . G . . END=10065832 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:23:0:22:0,0,417 +20 10065833 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:24:25:24:0,25,632 +20 10065834 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:0:26:0,0,636 +20 10065835 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:60:26:0,60,900 +20 10065836 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:25:27:0,25,715 +20 10065837 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:0:27:0,0,654 +20 10065838 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:38:27:0,38,732 +20 10065839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:41:27:0,41,732 +20 10065840 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:57:30:0,57,877 +20 10065841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:44:30:0,44,854 +20 10065842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:53:29:0,53,880 +20 10065843 . G . . END=10065844 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:0:27:0,0,605 +20 10065845 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:46:27:0,46,818 +20 10065846 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:25:0:25:0,0,623 +20 10065847 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:21:27:0,21,696 +20 10065848 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:46:29:0,46,765 +20 10065849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:0:28:0,0,691 +20 10065850 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:2:28:0,2,706 +20 10065851 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:51:28:0,51,813 +20 10065852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:50:28:0,50,823 +20 10065853 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:0:28:0,0,643 +20 10065854 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:50:28:0,50,828 +20 10065855 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:69:27:0,69,1035 +20 10065856 . A . . END=10065857 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:0:29:0,0,670 +20 10065858 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:43:29:0,43,832 +20 10065859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:18:31:0,18,833 +20 10065860 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:33:32:0,33,907 +20 10065861 . T . . END=10065863 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:63:32:0,63,920 +20 10065864 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:87:31:0,87,1305 +20 10065865 . C . . END=10065870 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:60:31:0,60,943 +20 10065871 . T . . END=10065872 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:31:0,90,1350 +20 10065873 . T . . END=10065874 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:63:32:0,63,966 +20 10065875 . C . . END=10065877 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:90:32:0,90,1350 +20 10065878 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:67:33:0,67,1034 +20 10065879 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:70:34:0,70,1034 +20 10065880 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:96:33:0,96,1440 +20 10065881 . T . . END=10065882 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:76:36:0,76,1137 +20 10065883 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:99:36:0,102,1530 +20 10065884 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:78:37:0,78,1146 +20 10065885 . A . . END=10065887 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:80:37:0,80,1145 +20 10065888 . C . . END=10065905 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:99:35:0,102,1530 +20 10065906 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:74:33:0,74,1021 +20 10065907 . T . . END=10066020 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:45:99:36:0,101,1201 +20 10066021 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:43:95:43:0,95,1245 +20 10066022 . T . . END=10066106 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:40:99:36:0,100,1147 +20 10066107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:40:98:40:0,98,1159 +20 10066108 . G . . END=10066123 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:40:99:37:0,102,1151 +20 10066124 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:40:92:40:0,92,1121 +20 10066125 . A . . END=10066152 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:38:99:36:0,99,1102 +20 10066153 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:97:36:0,97,1083 +20 10066154 . A . . END=10066162 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:99:33:0,99,1016 +20 10066163 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:97:36:0,97,1033 +20 10066164 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:83:36:0,83,1017 +20 10066165 . T . . END=10066168 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:99:35:0,99,1485 +20 10066169 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:83:34:0,83,1038 +20 10066170 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:99:33:0,99,997 +20 10066171 . T . . END=10066173 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:91:32:0,91,970 +20 10066174 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:69:33:0,69,920 +20 10066175 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:93:35:0,93,1395 +20 10066176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:88:35:0,88,1050 +20 10066177 . T . . END=10066178 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:34:0,90,1350 +20 10066179 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:89:35:0,89,1021 +20 10066180 . G . . END=10066183 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:90:30:0,90,940 +20 10066184 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:77:34:0,77,1015 +20 10066185 . G . . END=10066192 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:32:0,90,1350 +20 10066193 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:83:33:0,83,953 +20 10066194 . T . . END=10066205 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:30:0,90,916 +20 10066206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:85:32:0,85,973 +20 10066207 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:73:30:0,73,893 +20 10066208 . A . . END=10066211 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:31:0,90,954 +20 10066212 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:83:34:0,83,977 +20 10066213 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:64:34:0,64,901 +20 10066214 . C . . END=10066234 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:33:0,90,986 +20 10066235 . T . . END=10066251 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:72:25:0,72,848 +20 10066252 . G . . END=10066265 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:63:25:0,63,945 +20 10066266 . G . . END=10066272 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:26:75:25:0,75,780 +20 10066273 . G . . END=10066275 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:27:80:27:0,80,831 +20 10066276 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:70:29:0,70,800 +20 10066277 . T . . END=10066281 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:90:30:0,90,881 +20 10066282 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:76:31:0,76,919 +20 10066283 . G . . END=10066285 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:90:31:0,90,929 +20 10066286 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:66:32:0,66,894 +20 10066287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:32:0,90,1350 +20 10066288 . G . . END=10066290 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:83:32:0,83,944 +20 10066291 . G . . END=10066296 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:90:32:0,90,1350 +20 10066297 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:84:33:0,84,986 +20 10066298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:79:32:0,79,953 +20 10066299 . G . . END=10066307 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:30:0,90,887 +20 10066308 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:82:31:0,82,948 +20 10066309 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:90:30:0,90,930 +20 10066310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:87:29:0,87,930 +20 10066311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:90:31:0,90,1350 +20 10066312 . G . . END=10066313 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:84:28:0,84,884 +20 10066314 . A . . END=10066317 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:93:32:0,93,963 +20 10066318 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:88:33:0,88,967 +20 10066319 . C . . END=10066340 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:90:31:0,90,967 +20 10066341 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:71:31:0,71,872 +20 10066342 . T . . END=10066344 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:96:33:0,96,1440 +20 10066345 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:82:33:0,82,950 +20 10066346 . C . . END=10066350 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:32:0,90,1350 +20 10066351 . A . . END=10066362 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:81:30:0,81,879 +20 10066363 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:29:75:29:0,75,780 +20 10066364 . A . . END=10066365 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:87:31:0,87,1305 +20 10066366 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:79:31:0,79,865 +20 10066367 . A . . END=10066374 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:81:30:0,81,1215 +20 10066375 . C . . END=10066380 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:31:0,90,961 +20 10066381 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:99:33:0,99,999 +20 10066382 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:76:33:0,76,956 +20 10066383 . T . . END=10066394 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:99:34:0,102,1024 +20 10066395 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:93:35:0,93,1077 +20 10066396 . G . . END=10066398 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:99:35:0,102,1530 +20 10066399 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:90:35:0,90,1066 +20 10066400 . T . . END=10066404 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:99:33:0,99,1072 +20 10066405 . A . . END=10066412 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:90:33:0,90,1350 +20 10066413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:87:33:0,87,1305 +20 10066414 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:73:33:0,73,899 +20 10066415 . A . . END=10066416 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:81:33:0,81,1215 +20 10066417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:78:31:0,78,1170 +20 10066418 . C . . END=10066428 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:81:31:0,81,1215 +20 10066429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:90:31:0,90,1350 +20 10066430 . T . . END=10066435 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:84:30:0,84,1260 +20 10066436 . C . . END=10066442 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:93:32:0,93,1395 +20 10066443 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:82:33:0,82,947 +20 10066444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:96:33:0,96,1440 +20 10066445 . T . . END=10066448 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:99:33:0,99,1041 +20 10066449 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:93:31:0,93,984 +20 10066450 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:80:33:0,80,957 +20 10066451 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:75:33:0,75,998 +20 10066452 . T . . END=10066458 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:33:0,90,1350 +20 10066459 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:80:36:0,80,993 +20 10066460 . A . . END=10066462 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:93:33:0,93,1395 +20 10066463 . C . . END=10066475 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:99:34:0,99,1485 +20 10066476 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:40:93:40:0,93,1151 +20 10066477 . C . . END=10066496 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:99:38:0,99,1119 +20 10066497 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:94:42:0,94,1230 +20 10066498 . A . . END=10066511 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:43:99:40:0,103,1139 +20 10066512 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:94:42:0,94,1249 +20 10066513 . T . . END=10066516 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:99:41:0,114,1710 +20 10066517 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:88:42:0,88,1169 +20 10066518 . A . . END=10066533 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:99:40:0,111,1665 +20 10066534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:94:42:0,94,1224 +20 10066535 . A . . END=10066583 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:44:99:42:0,107,1313 +20 10066584 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:96:42:0,96,1219 +20 10066585 . T . . END=10066592 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:38:99:38:0,108,1620 +20 10066593 . C . . END=10066594 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:38:93:37:0,93,1104 +20 10066595 . T . . END=10066605 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:99:36:0,99,1171 +20 10066606 . C . . END=10066615 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:90:34:0,90,1091 +20 10066616 . T . . END=10066618 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:87:32:0,87,1305 +20 10066619 . G . . END=10066620 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:90:32:0,90,1350 +20 10066621 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:89:35:0,89,1078 +20 10066622 . G . . END=10066624 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:90:33:0,90,1350 +20 10066625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:87:33:0,87,1305 +20 10066626 . C . . END=10066627 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:90:32:0,90,1350 +20 10066628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:87:33:0,87,1305 +20 10066629 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:79:32:0,79,979 +20 10066630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:87:33:0,87,1305 +20 10066631 . G . . END=10066633 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:32:78:31:0,78,916 +20 10066634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:84:33:0,84,1260 +20 10066635 . A . . END=10066648 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:75:28:0,75,815 +20 10066649 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:81:30:0,81,1215 +20 10066650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:78:31:0,78,911 +20 10066651 . A . . END=10066652 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:31:81:31:0,81,1215 +20 10066653 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:28:67:28:0,67,781 +20 10066654 . A . . END=10066657 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:30:84:29:0,84,1260 +20 10066658 . A . . END=10066670 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:31:0,90,1350 +20 10066671 . T . . END=10066672 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:87:33:0,87,1305 +20 10066673 . A . . END=10066682 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:31:0,90,1350 +20 10066683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:87:33:0,87,1305 +20 10066684 . C . . END=10066687 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:90:33:0,90,1350 +20 10066688 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:88:33:0,88,956 +20 10066689 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:69:33:0,69,918 +20 10066690 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:93:33:0,93,1395 +20 10066691 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:99:35:0,99,1485 +20 10066692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:97:36:0,97,1067 +20 10066693 . A . . END=10066708 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:99:35:0,102,1060 +20 10066709 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:95:41:0,95,1178 +20 10066710 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:99:41:0,114,1710 +20 10066711 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:91:41:0,91,1105 +20 10066712 . T . . END=10066726 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:39:99:38:0,100,1136 +20 10066727 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:38:97:38:0,97,1141 +20 10066728 . C . . END=10066731 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:99:40:0,99,1161 +20 10066732 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:41:98:41:0,98,1197 +20 10066733 . A . . END=10066737 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:99:39:0,102,1152 +20 10066738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:43:92:43:0,92,1204 +20 10066739 . C . . END=10066740 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:99:41:0,113,1279 +20 10066741 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:84:42:0,84,1204 +20 10066742 . C . . END=10066852 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:44:99:39:0,99,1245 +20 10066853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:43:96:43:0,96,1254 +20 10066854 . G . . END=10066884 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:39:99:37:0,108,1122 +20 10066885 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:88:35:0,88,1007 +20 10066886 . C . . END=10066916 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:46:99:37:0,99,1131 +20 10066917 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:47:95:47:0,95,1407 +20 10066918 . T . . END=10066961 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:42:99:39:0,102,1260 +20 10066962 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:39:89:39:0,89,1180 +20 10066963 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:38:99:38:0,108,1620 +20 10066964 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:95:37:0,95,1136 +20 10066965 . T . . END=10066968 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:99:36:0,99,1485 +20 10066969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:88:36:0,88,1137 +20 10066970 . A . . END=10066972 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:99:35:0,99,1485 +20 10066973 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:96:37:0,96,1440 +20 10066974 . G . . END=10066978 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:99:36:0,99,1485 +20 10066979 . C . . END=10066981 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:96:34:0,96,1440 +20 10066982 . T . . END=10066989 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:99:34:0,99,1485 +20 10066990 . T . . END=10066993 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:91:34:0,91,1090 +20 10066994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:62:33:0,62,949 +20 10066995 . A . . END=10067002 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:93:32:0,93,1005 +20 10067003 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:33:80:33:0,80,1014 +20 10067004 . T . . END=10067007 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:93:33:0,93,1395 +20 10067008 . A . . END=10067011 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:83:34:0,83,1038 +20 10067012 . A . . END=10067015 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:78:33:0,78,1170 +20 10067016 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:81:36:0,81,1215 +20 10067017 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:35:62:35:0,62,981 +20 10067018 . A . . END=10067028 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:34:80:33:0,80,1011 +20 10067029 . C . . END=10067031 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:78:33:0,78,1170 +20 10067032 . T . . END=10067036 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:38:60:34:0,60,900 +20 10067037 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:57:37:0,57,855 +20 10067038 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:37:54:37:0,54,810 +20 10067039 . T . . END=10067040 GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:45:35:0,45,675 +20 10067041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:48:0,103,1665 ./.:36:42:36:0,42,630 +20 10067042 . A . . END=10067043 GT:DP:GQ:MIN_DP:PL ./.:52:90:52:0,90,1350 ./.:33:39:33:0,39,585 +20 10067044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:84:52:0,84,1260 ./.:32:36:32:0,36,540 +20 10067045 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:84:52:0,84,1260 ./.:33:33:33:0,33,495 +20 10067046 . T . . . GT:DP:GQ:MIN_DP:PL ./.:52:75:52:0,75,1125 ./.:33:30:33:0,30,450 +20 10067047 . A . . END=10067048 GT:DP:GQ:MIN_DP:PL ./.:51:66:50:0,66,990 ./.:32:24:30:0,24,360 +20 10067049 . TAAAAAAAAA TAA,TAAAAAA,T,TA, . . BaseQRankSum=0.177;ClippingRankSum=0.00;DP=99;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=310256,99;ReadPosRankSum=-4.960e-01 GT:AD:DP:GQ:PL:SB ./.:2,9,0,4,7,0:22:99:651,135,106,443,170,627,365,101,591,925,164,0,394,381,340,443,170,627,591,394,627:1,1,12,8 ./.:1,8,9,0,0,0:18:99:571,324,502,248,0,237,593,443,276,696,593,443,276,696,696,593,443,276,696,696,696:0,1,9,8 +20 10067050 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067051 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067052 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067053 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067054 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067055 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067056 . A *, . . DP=99 GT:AD:DP:GQ:PL:SB ./.:2,9,0:22:99:651,135,106,443,170,627:1,1,12,8 ./.:1,9,0:18:99:571,248,237,593,276,696:0,1,9,8 +20 10067057 . A *, . . DP=102 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,9,0:22:99:.:651,135,106,443,170,627:1,1,12,8 ./.:.:33:0:33:0,0,485,0,485,485 +20 10067058 . A *, . . DP=103 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,9,0:22:99:.:651,135,106,443,170,627:1,1,12,8 ./.:.:34:75:34:0,75,1125,75,1125,1125 +20 10067059 . A . . END=10067060 GT:DP:GQ:MIN_DP:PL ./.:57:87:56:0,87,1305 ./.:34:75:34:0,75,1125 +20 10067061 . A . . . GT:DP:GQ:MIN_DP:PL ./.:59:90:59:0,90,1350 ./.:36:81:34:0,81,1215 +20 10067062 . A . . END=10067066 GT:DP:GQ:MIN_DP:PL ./.:61:99:56:0,99,1485 ./.:36:81:34:0,81,1215 +20 10067067 . A . . . GT:DP:GQ:MIN_DP:PL ./.:52:19:52:0,19,1692 ./.:35:93:35:0,93,1395 +20 10067068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:47:0:47:0,0,1430 ./.:33:70:33:0,70,1002 +20 10067069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:26:42:0,26,1402 ./.:36:90:34:0,90,1350 +20 10067070 . A . . . GT:DP:GQ:MIN_DP:PL ./.:40:84:40:0,84,1498 ./.:36:90:34:0,90,1350 +20 10067071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,105,1471 ./.:36:90:34:0,90,1350 +20 10067072 . A . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,105,1471 ./.:37:47:37:0,47,1098 +20 10067073 . A . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,105,1471 ./.:36:87:36:0,87,1091 +20 10067074 . A . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,105,1471 ./.:38:63:38:0,63,1092 +20 10067075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:39:0,105,1471 ./.:37:96:37:0,96,1440 +20 10067076 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:97:44:0,97,1535 ./.:37:69:37:0,69,1056 +20 10067077 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:45:0,110,1645 ./.:37:79:37:0,79,1096 +20 10067078 . G . . END=10067079 GT:DP:GQ:MIN_DP:PL ./.:48:99:45:0,110,1645 ./.:35:90:34:0,90,1350 +20 10067080 . A . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:45:0,110,1645 ./.:35:82:35:0,82,1059 +20 10067081 . A . . END=10067082 GT:DP:GQ:MIN_DP:PL ./.:48:99:45:0,110,1645 ./.:35:90:34:0,90,1350 +20 10067083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:99:45:0,110,1645 ./.:35:72:35:0,72,1022 +20 10067084 . T . . END=10067089 GT:DP:GQ:MIN_DP:PL ./.:48:99:45:0,110,1645 ./.:35:93:34:0,93,1395 +20 10067090 . C A, . . DP=86;ExcessHet=3.01;RAW_MQandDP=274789,86 GT:AD:DP:GQ:PL:SB ./.:0,55,0:55:99:2033,164,0,2033,164,2033:0,0,27,28 ./.:0,30,0:30:90:969,90,0,969,90,969:0,0,15,15 +20 10067091 . T . . END=10067095 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1063 +20 10067096 . A . . END=10067097 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:35:93:35:0,93,1036 +20 10067098 . T . . END=10067099 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,102,993 +20 10067100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:86:34:0,86,1013 +20 10067101 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:96:32:0,96,1016 +20 10067102 . A . . END=10067105 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:35:0,105,1072 +20 10067106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:91:36:0,91,1085 +20 10067107 . T . . END=10067109 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10067110 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:91:36:0,91,1082 +20 10067111 . A . . END=10067112 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:36:0,102,1530 +20 10067113 . T . . END=10067114 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:90:36:0,90,1078 +20 10067115 . A . . END=10067120 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:35:99:34:0,99,1485 +20 10067121 . G . . END=10067122 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:96:35:0,96,1049 +20 10067123 . G . . END=10067128 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:99:35:0,99,1485 +20 10067129 . T . . END=10067130 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:31:90:30:0,90,897 +20 10067131 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:99:33:0,99,1018 +20 10067132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:43:34:0,43,910 +20 10067133 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10067134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:66:33:0,66,922 +20 10067135 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:34:0,99,1485 +20 10067136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:66:33:0,66,929 +20 10067137 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:57:34:0,57,953 +20 10067138 . G . . END=10067141 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:72:35:0,72,965 +20 10067142 . C . . END=10067145 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:80:38:0,80,1032 +20 10067146 . A . . END=10067170 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:40:99:37:0,100,1066 +20 10067171 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:68:37:0,68,1035 +20 10067172 . G . . END=10067175 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:99:36:0,108,1111 +20 10067176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:98:38:0,98,1089 +20 10067177 . C . . END=10067183 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:38:0,100,1148 +20 10067184 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:81:39:0,81,1089 +20 10067185 . T . . END=10067187 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:99:37:0,99,1164 +20 10067188 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:87:38:0,87,1102 +20 10067189 . T . . END=10067196 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:37:0,105,1133 +20 10067197 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:92:39:0,92,1144 +20 10067198 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:40:99:40:0,111,1665 +20 10067199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:88:39:0,88,1165 +20 10067200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:37:99:37:0,108,1620 +20 10067201 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:38:95:38:0,95,1140 +20 10067202 . C . . END=10067207 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:39:99:38:0,105,1575 +20 10067208 . A . . END=10067210 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:94:36:0,94,1068 +20 10067211 . A . . END=10067216 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:84:34:0,84,1260 +20 10067217 . G . . END=10067220 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:36:96:36:0,96,1440 +20 10067221 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:31:68:31:0,68,923 +20 10067222 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:99:33:0,99,1007 +20 10067223 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:82:33:0,82,1006 +20 10067224 . G . . END=10067238 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:90:32:0,90,1350 +20 10067239 . T . . END=10067243 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:87:32:0,87,1010 +20 10067244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:32:90:32:0,90,1350 +20 10067245 . A . . END=10067246 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:84:32:0,84,1260 +20 10067247 . A . . END=10067256 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:90:32:0,90,1350 +20 10067257 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:33:83:33:0,83,974 +20 10067258 . A . . END=10067261 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:99:33:0,99,1020 +20 10067262 . G . . END=10067263 GT:DP:GQ:MIN_DP:PL ./.:76:99:50:0,120,1800 ./.:34:96:34:0,96,1440 +20 10067264 . G A, . . BaseQRankSum=0.369;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=376082,106;ReadPosRankSum=-4.930e-01 GT:AD:DP:GQ:PL:SB ./.:0,73,0:73:99:2951,219,0,2951,219,2951:0,0,38,35 ./.:20,13,0:33:99:319,0,534,379,573,952:8,12,7,6 +20 10067265 . C . . END=10067280 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:93:33:0,93,1395 +20 10067281 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:66:33:0,66,985 +20 10067282 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:31:59:31:0,59,932 +20 10067283 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:68:33:0,68,991 +20 10067284 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:70:34:0,70,1047 +20 10067285 . G . . END=10067286 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:67:34:0,67,1018 +20 10067287 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:90:34:0,90,1350 +20 10067288 . A . . END=10067297 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:80:32:0,80,986 +20 10067298 . A . . END=10067299 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:32:90:30:0,90,877 +20 10067300 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:30:72:30:0,72,842 +20 10067301 . G . . END=10067304 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:90:31:0,90,1350 +20 10067305 . G . . END=10067309 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:99:34:0,99,1485 +20 10067310 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:74:36:0,74,1056 +20 10067311 . T . . END=10067318 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:33:0,99,1042 +20 10067319 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:97:36:0,97,1111 +20 10067320 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:50:36:0,50,969 +20 10067321 . A . . END=10067323 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:91:36:0,91,1116 +20 10067324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:36:0,99,1485 +20 10067325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:95:37:0,95,1059 +20 10067326 . C . . END=10067328 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:36:0,102,1530 +20 10067329 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:83:36:0,83,1077 +20 10067330 . T . . END=10067334 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:35:0,99,1060 +20 10067335 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:85:36:0,85,1040 +20 10067336 . C . . END=10067337 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:36:0,99,1485 +20 10067338 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:83:38:0,83,1066 +20 10067339 . A . . END=10067447 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:45:99:37:0,102,1107 +20 10067448 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:47:96:47:0,96,1399 +20 10067449 . G . . END=10067545 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:45:99:38:0,100,1191 +20 10067546 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:90:37:0,90,1105 +20 10067547 . C . . END=10067549 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:37:0,99,1485 +20 10067550 . G . . END=10067557 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:93:35:0,93,1081 +20 10067558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:77:35:0,77,1040 +20 10067559 . A . . END=10067566 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:96:33:0,96,1111 +20 10067567 . A . . END=10067586 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:99:36:0,102,1530 +20 10067587 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:90:36:0,90,1053 +20 10067588 . G . . END=10067600 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:38:99:34:0,99,1485 +20 10067601 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:98:39:0,98,1182 +20 10067602 . G . . END=10067624 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:99:37:0,108,1165 +20 10067625 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:41:95:41:0,95,1169 +20 10067626 . A . . END=10067640 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:40:99:36:0,99,1485 +20 10067641 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:34:96:34:0,96,1440 +20 10067642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:99:35:0,99,1485 +20 10067643 . A . . END=10067656 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:90:32:0,90,1045 +20 10067657 . G . . END=10067658 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:99:36:0,99,1485 +20 10067659 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:33:81:33:0,81,941 +20 10067660 . T . . END=10067674 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:35:99:34:0,99,1049 +20 10067675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:36:96:36:0,96,1064 +20 10067676 . G . . END=10067716 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:39:99:36:0,99,1083 +20 10067717 . C . . END=10067719 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:96:37:0,96,1440 +20 10067720 . C . . END=10067721 GT:DP:GQ:MIN_DP:PL ./.:73:99:52:0,117,1800 ./.:37:99:37:0,102,1530 +20 10067722 . A C, . . DP=93;ExcessHet=3.01;RAW_MQandDP=334800,93 GT:AD:DP:GQ:PL:SB ./.:0,54,0:54:99:2175,163,0,2175,163,2175:0,0,25,29 ./.:0,38,0:38:99:1185,114,0,1185,114,1185:0,0,19,19 +20 10067723 . C . . END=10067728 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:35:0,99,1485 +20 10067729 . A . . END=10067730 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:96:36:0,96,1440 +20 10067731 . C . . END=10067752 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:36:0,99,1485 +20 10067753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:89:37:0,89,1106 +20 10067754 . T . . END=10067756 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:99:37:0,102,1530 +20 10067757 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:96:38:0,96,1125 +20 10067758 . T . . END=10067764 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:37:0,99,1117 +20 10067765 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:37:0,93,1086 +20 10067766 . C . . END=10067770 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:38:0,105,1575 +20 10067771 . G . . END=10067772 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:92:37:0,92,1052 +20 10067773 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:83:38:0,83,1035 +20 10067774 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:97:38:0,97,1052 +20 10067775 . C . . END=10067814 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:40:99:35:0,102,1044 +20 10067815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:41:93:41:0,93,1201 +20 10067816 . A . . END=10067832 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:41:99:36:0,106,1099 +20 10067833 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:42:97:42:0,97,1234 +20 10067834 . T . . END=10067882 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:44:99:42:0,111,1301 +20 10067883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:42:98:42:0,98,1282 +20 10067884 . A . . END=10067953 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:36:0,99,1132 +20 10067954 . T . . END=10067955 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:90:38:0,90,1124 +20 10067956 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:38:0,105,1575 +20 10067957 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:96:38:0,96,1107 +20 10067958 . A . . END=10067983 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:99:36:0,99,1120 +20 10067984 . T . . END=10067987 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:35:0,93,974 +20 10067988 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:39:87:39:0,87,1041 +20 10067989 . A . . END=10067991 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:38:99:36:0,99,1485 +20 10067992 . C . . END=10067994 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:93:35:0,93,970 +20 10067995 . T . . END=10067998 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:37:99:36:0,99,1485 +20 10067999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:78:35:0,78,968 +20 10068000 . G . . END=10068002 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:99:35:0,99,1485 +20 10068003 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:34:84:34:0,84,931 +20 10068004 . A . . END=10068009 GT:DP:GQ:MIN_DP:PL ./.:57:99:39:0,99,1485 ./.:35:90:33:0,90,1350 +20 10068010 . T . . END=10068014 GT:DP:GQ:MIN_DP:PL ./.:39:90:38:0,90,1350 ./.:35:90:33:0,90,1350 +20 10068015 . T . . END=10068017 GT:DP:GQ:MIN_DP:PL ./.:37:84:34:0,84,1260 ./.:35:90:33:0,90,1350 +20 10068018 . T . . END=10068019 GT:DP:GQ:MIN_DP:PL ./.:37:84:34:0,84,1260 ./.:36:99:35:0,99,1485 +20 10068020 . A . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:34:0,90,1350 ./.:36:99:35:0,99,1485 +20 10068021 . A . . . GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1260 ./.:34:96:34:0,96,1440 +20 10068022 . A . . . GT:DP:GQ:MIN_DP:PL ./.:33:84:33:0,84,1260 ./.:35:99:35:0,99,1485 +20 10068023 . A . . END=10068025 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:34:82:33:0,82,976 +20 10068026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:36:93:36:0,93,1090 +20 10068027 . T . . END=10068028 GT:DP:GQ:MIN_DP:PL ./.:33:72:32:0,72,1080 ./.:37:99:37:0,99,1139 +20 10068029 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:69:32:0,69,1035 ./.:37:83:37:0,83,1041 +20 10068030 . G . . END=10068033 GT:DP:GQ:MIN_DP:PL ./.:32:72:32:0,72,1080 ./.:37:96:35:0,96,1440 +20 10068034 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:35:12:35:0,12,845 +20 10068035 . G . . END=10068036 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:34:96:34:0,96,1440 +20 10068037 . G . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:34:83:34:0,83,988 +20 10068038 . G . . END=10068040 GT:DP:GQ:MIN_DP:PL ./.:30:81:30:0,81,1215 ./.:32:93:31:0,93,953 +20 10068041 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:93:31:0,93,953 +20 10068042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:71:32:0,71,900 +20 10068043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:32:93:31:0,93,935 +20 10068044 . T . . END=10068045 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:31:0,93,935 +20 10068046 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:78:31:0,78,907 +20 10068047 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:32:0,93,1395 +20 10068048 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:85:32:0,85,919 +20 10068049 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:93:31:0,93,968 +20 10068050 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:77:31:0,77,917 +20 10068051 . T . . END=10068055 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:93:32:0,93,990 +20 10068056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:74:32:0,74,908 +20 10068057 . C . . END=10068060 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:33:90:32:0,90,959 +20 10068061 . T . . END=10068063 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:34:87:34:0,87,1305 +20 10068064 . C . . END=10068065 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:35:90:35:0,90,1350 +20 10068066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:35:87:35:0,87,1066 +20 10068067 . A . . END=10068068 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:34:90:33:0,90,1350 +20 10068069 . A . . END=10068071 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:87:31:0,87,1305 +20 10068072 . T . . END=10068077 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:90:32:0,90,1350 +20 10068078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:82:32:0,82,965 +20 10068079 . A . . END=10068080 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:90:30:0,90,948 +20 10068081 . T . . END=10068084 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:84:30:0,84,1260 +20 10068085 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:71:29:0,71,866 +20 10068086 . C . . END=10068090 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:31:84:31:0,84,1260 +20 10068091 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:78:30:0,78,938 +20 10068092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:81:30:0,81,1215 +20 10068093 . C . . END=10068101 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:70:28:0,70,839 +20 10068102 . C . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:55:29:0,55,789 +20 10068103 . A . . END=10068105 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:28:81:27:0,81,807 +20 10068106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:27:53:27:0,53,807 +20 10068107 . A . . END=10068108 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:27:81:27:0,81,872 +20 10068109 . T . . END=10068118 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:72:27:0,72,1080 +20 10068119 . T . . END=10068120 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:32:81:32:0,81,1215 +20 10068121 . T . . END=10068124 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:76:29:0,76,943 +20 10068125 . G . . . GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:28:68:28:0,68,786 +20 10068126 . A . . END=10068128 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:29:72:29:0,72,1080 +20 10068129 . T . . END=10068135 GT:DP:GQ:MIN_DP:PL ./.:43:99:34:0,99,1485 ./.:30:60:28:0,60,900 +20 10068136 . A . . END=10068140 GT:DP:GQ:MIN_DP:PL ./.:40:84:39:0,84,1260 ./.:30:60:28:0,60,900 +20 10068141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:30:60:28:0,60,900 +20 10068142 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:84:38:0,84,1260 ./.:30:60:28:0,60,900 +20 10068143 . T . . END=10068148 GT:DP:GQ:MIN_DP:PL ./.:35:75:31:0,75,1125 ./.:30:60:28:0,60,900 +20 10068149 . T . . . GT:DP:GQ:MIN_DP:PL ./.:31:63:31:0,63,945 ./.:30:60:28:0,60,900 +20 10068150 . A . . END=10068151 GT:DP:GQ:MIN_DP:PL ./.:31:63:31:0,63,945 ./.:31:57:30:0,57,855 +20 10068152 . A . . END=10068154 GT:DP:GQ:MIN_DP:PL ./.:29:57:28:0,57,855 ./.:31:57:30:0,57,855 +20 10068155 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:57:28:0,57,855 ./.:30:47:30:0,47,863 +20 10068156 . A . . END=10068157 GT:DP:GQ:MIN_DP:PL ./.:27:51:27:0,51,765 ./.:34:51:33:0,51,765 +20 10068158 . GTGTATATATATA G, . . BaseQRankSum=-6.520e-01;ClippingRankSum=0.00;DP=60;ExcessHet=3.01;MQRankSum=0.328;RAW_MQandDP=93364,29;ReadPosRankSum=-2.530e-01 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:3,4,0:7:57:.:0|1:10068158_GTGTATATATATA_G:104,0,57,114,69,183:0,3,2,2 ./.:.:31:54:31:.:.:0,54,810,54,810,810 +20 10068159 . T *, . . DP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:3,4,0:7:57:.:0|1:10068158_GTGTATATATATA_G:104,0,57,114,69,183:0,3,2,2 ./.:.:33:45:32:.:.:0,45,675,45,675,675 +20 10068160 . GTATATATATATGTA G, . . BaseQRankSum=-5.660e-01;ClippingRankSum=0.00;DP=60;ExcessHet=3.01;MQRankSum=-7.120e-01;RAW_MQandDP=87005,28;ReadPosRankSum=0.967 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:33:45:32:.:.:0,45,675,45,675,675 +20 10068161 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:32:6:31:.:.:0,6,90,6,90,90 +20 10068162 . A *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:32:6:31:.:.:0,6,90,6,90,90 +20 10068163 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:32:6:31:.:.:0,6,90,6,90,90 +20 10068164 . A *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:32:6:31:.:.:0,6,90,6,90,90 +20 10068165 . T *, . . DP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:32:6:31:.:.:0,6,90,6,90,90 +20 10068166 . ATATATG A,*, . . BaseQRankSum=-9.800e-01;ClippingRankSum=0.00;DP=53;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=88000,25;ReadPosRankSum=-6.600e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,0,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,60,201,0,141,134,60,201,141,201:2,3,0,2 ./.:2,9,0,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273,224,49,273,273:2,0,3,6 +20 10068167 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:2,9,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273:2,0,3,6 +20 10068168 . ATATG A,*, . . BaseQRankSum=0.447;ClippingRankSum=0.00;DP=53;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=88000,25;ReadPosRankSum=0.660 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,0,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,60,201,0,141,134,60,201,141,201:2,3,0,2 ./.:9,2,0,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273,49,224,273,273:3,6,2,0 +20 10068169 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068170 . A *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068171 . T *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068172 . G *, . . DP=53 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:5,2,0:7:44:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:9,2,0:11:22:1|0:10068166_ATATATG_A:22,0,218,49,224,273:3,6,2,0 +20 10068173 . T *, . . DP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:29:0:29:.:.:0,0,115,0,115,115 +20 10068174 . A *, . . DP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:5,2,0:7:44:.:1|0:10068158_GTGTATATATATA_G:44,0,134,60,141,201:2,3,0,2 ./.:.:29:39:29:.:.:0,39,585,39,585,585 +20 10068175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:17:20:0,17,729 ./.:29:39:29:0,39,585 +20 10068176 . A . . . GT:DP:GQ:MIN_DP:PL ./.:19:24:17:0,24,360 ./.:30:42:30:0,42,630 +20 10068177 . T . . END=10068180 GT:DP:GQ:MIN_DP:PL ./.:19:24:17:0,24,360 ./.:30:48:29:0,48,720 +20 10068181 . T . . END=10068184 GT:DP:GQ:MIN_DP:PL ./.:16:27:16:0,27,405 ./.:30:48:29:0,48,720 +20 10068185 . T . . . GT:DP:GQ:MIN_DP:PL ./.:16:27:16:0,27,405 ./.:30:51:30:0,51,765 +20 10068186 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:9:16:0,9,570 ./.:30:51:30:0,51,765 +20 10068187 . T . . . GT:DP:GQ:MIN_DP:PL ./.:16:27:15:0,27,405 ./.:30:51:30:0,51,765 +20 10068188 . A . . END=10068190 GT:DP:GQ:MIN_DP:PL ./.:16:27:15:0,27,405 ./.:29:54:29:0,54,810 +20 10068191 . T . . END=10068192 GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,289 ./.:29:54:29:0,54,810 +20 10068193 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:0:11:0,0,289 ./.:30:57:30:0,57,855 +20 10068194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:30:57:30:0,57,855 +20 10068195 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:30:10:0,30,411 ./.:31:63:30:0,63,945 +20 10068196 . A . . . GT:DP:GQ:MIN_DP:PL ./.:11:33:11:0,33,437 ./.:31:63:30:0,63,945 +20 10068197 . T . . END=10068198 GT:DP:GQ:MIN_DP:PL ./.:13:36:12:0,36,476 ./.:31:63:30:0,63,945 +20 10068199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:27:37:27:0,37,739 +20 10068200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:45:16:0,45,675 ./.:27:69:27:0,69,1035 +20 10068201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:51:18:0,51,765 ./.:28:56:28:0,56,784 +20 10068202 . A . . END=10068203 GT:DP:GQ:MIN_DP:PL ./.:19:54:19:0,54,810 ./.:28:73:27:0,73,837 +20 10068204 . A . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:29:81:29:0,81,1215 +20 10068205 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:28:78:28:0,78,1170 +20 10068206 . C . . . GT:DP:GQ:MIN_DP:PL ./.:21:57:20:0,57,855 ./.:26:61:26:0,61,780 +20 10068207 . C . . END=10068208 GT:DP:GQ:MIN_DP:PL ./.:22:60:21:0,60,900 ./.:28:78:27:0,78,1170 +20 10068209 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:60:21:0,60,900 ./.:28:84:28:0,84,869 +20 10068210 . T . . . GT:DP:GQ:MIN_DP:PL ./.:26:75:26:0,75,960 ./.:29:69:29:0,69,852 +20 10068211 . C . . END=10068215 GT:DP:GQ:MIN_DP:PL ./.:26:75:26:0,75,960 ./.:30:80:30:0,80,955 +20 10068216 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:81:27:0,81,1065 ./.:30:80:30:0,80,955 +20 10068217 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:30:80:30:0,80,955 +20 10068218 . A . . END=10068219 GT:DP:GQ:MIN_DP:PL ./.:29:81:28:0,81,1215 ./.:30:80:30:0,80,955 +20 10068220 . C . . . GT:DP:GQ:MIN_DP:PL ./.:29:81:28:0,81,1215 ./.:31:64:31:0,64,884 +20 10068221 . A . . END=10068223 GT:DP:GQ:MIN_DP:PL ./.:29:81:28:0,81,1215 ./.:33:93:33:0,93,1395 +20 10068224 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:30:76:30:0,76,911 +20 10068225 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:31:0,90,1350 ./.:31:90:30:0,90,903 +20 10068226 . T . . END=10068227 GT:DP:GQ:MIN_DP:PL ./.:32:87:31:0,87,1305 ./.:31:90:30:0,90,903 +20 10068228 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:31:75:31:0,75,892 +20 10068229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:31:93:31:0,93,978 +20 10068230 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:32:69:32:0,69,869 +20 10068231 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:31:93:31:0,93,960 +20 10068232 . A . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:33:67:33:0,67,962 +20 10068233 . A . . END=10068237 GT:DP:GQ:MIN_DP:PL ./.:32:87:30:0,87,1305 ./.:35:99:34:0,99,992 +20 10068238 . T . . END=10068242 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:35:99:34:0,99,992 +20 10068243 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:37:95:37:0,95,1052 +20 10068244 . C . . END=10068247 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1168 ./.:43:99:36:0,100,1082 +20 10068248 . T . . END=10068290 GT:DP:GQ:MIN_DP:PL ./.:38:99:34:0,102,1384 ./.:43:99:36:0,100,1082 +20 10068291 . C . . END=10068299 GT:DP:GQ:MIN_DP:PL ./.:40:90:36:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068300 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:87:36:0,87,1305 ./.:43:99:36:0,100,1082 +20 10068301 . C . . END=10068308 GT:DP:GQ:MIN_DP:PL ./.:32:72:31:0,72,1080 ./.:43:99:36:0,100,1082 +20 10068309 . T . . END=10068312 GT:DP:GQ:MIN_DP:PL ./.:28:66:26:0,66,990 ./.:43:99:36:0,100,1082 +20 10068313 . A . . END=10068316 GT:DP:GQ:MIN_DP:PL ./.:28:72:28:0,72,1080 ./.:43:99:36:0,100,1082 +20 10068317 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:69:27:0,69,1035 ./.:43:99:36:0,100,1082 +20 10068318 . C . . END=10068322 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:43:99:36:0,100,1082 +20 10068323 . T . . END=10068328 GT:DP:GQ:MIN_DP:PL ./.:28:81:28:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:78:27:0,78,1170 ./.:43:99:36:0,100,1082 +20 10068330 . C . . END=10068338 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068339 . A . . END=10068347 GT:DP:GQ:MIN_DP:PL ./.:31:75:30:0,75,1125 ./.:43:99:36:0,100,1082 +20 10068348 . T . . END=10068352 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1215 ./.:43:99:36:0,100,1082 +20 10068353 . C . . END=10068355 GT:DP:GQ:MIN_DP:PL ./.:29:78:28:0,78,1170 ./.:43:99:36:0,100,1082 +20 10068356 . T . . END=10068361 GT:DP:GQ:MIN_DP:PL ./.:30:84:29:0,84,1260 ./.:43:99:36:0,100,1082 +20 10068362 . T . . END=10068364 GT:DP:GQ:MIN_DP:PL ./.:33:90:33:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068365 . G . . END=10068368 GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:43:99:36:0,100,1082 +20 10068369 . A . . END=10068370 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:43:99:36:0,100,1082 +20 10068371 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:98:38:0,98,1091 +20 10068372 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:85:38:0,85,1127 +20 10068373 . A . . END=10068400 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:38:0,102,1162 +20 10068401 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:87:38:0,87,1146 +20 10068402 . A . . END=10068405 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:38:0,103,1213 +20 10068406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:89:39:0,89,1187 +20 10068407 . T . . END=10068412 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:37:0,102,1530 +20 10068413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:94:40:0,94,1270 +20 10068414 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:82:38:0,82,1144 +20 10068415 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:94:41:0,94,1290 +20 10068416 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,105,1575 +20 10068417 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:91:41:0,91,1289 +20 10068418 . A . . END=10068420 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:83:39:0,83,1214 +20 10068421 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:65:38:0,65,1064 +20 10068422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:87:40:0,87,1223 +20 10068423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:76:40:0,76,1217 +20 10068424 . G . . END=10068425 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:83:39:0,83,1176 +20 10068426 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:38:0,102,1530 +20 10068427 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:79:37:0,79,1176 +20 10068428 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,102,1530 +20 10068429 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:75:36:0,75,1093 +20 10068430 . A . . END=10068432 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1163 +20 10068433 . T . . END=10068436 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:37:0,105,1575 +20 10068437 . A . . END=10068438 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:90:37:0,90,1098 +20 10068439 . C . . END=10068442 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:36:0,105,1575 +20 10068443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:72:38:0,72,1086 +20 10068444 . A . . END=10068454 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:99:34:0,101,1048 +20 10068455 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:92:36:0,92,1051 +20 10068456 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:99:36:0,99,1485 +20 10068457 . C . . END=10068459 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:96:33:0,96,1440 +20 10068460 . A . . END=10068466 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:81:34:0,81,1049 +20 10068467 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:78:31:0,78,881 +20 10068468 . A . . END=10068470 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:87:32:0,87,1305 +20 10068471 . T . . END=10068473 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,955 +20 10068474 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:99:33:0,99,1024 +20 10068475 . T . . END=10068477 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:96:32:0,96,1013 +20 10068478 . T . . END=10068483 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:99:34:0,102,1084 +20 10068484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:93:37:0,93,1101 +20 10068485 . A . . END=10068486 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,105,1575 +20 10068487 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:92:36:0,92,1139 +20 10068488 . T . . END=10068493 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:99:36:0,105,1132 +20 10068494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:89:39:0,89,1128 +20 10068495 . A . . END=10068499 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:38:0,102,1183 +20 10068500 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:94:39:0,94,1162 +20 10068501 . C . . END=10068521 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:37:0,99,1134 +20 10068522 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:90:38:0,90,1134 +20 10068523 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:86:38:0,86,1162 +20 10068524 . G . . END=10068533 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:99:37:0,99,1100 +20 10068534 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:89:36:0,89,1062 +20 10068535 . T . . END=10068545 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:37:0,102,1139 +20 10068546 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:82:40:0,82,1117 +20 10068547 . A . . END=10068556 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:39:0,105,1265 +20 10068557 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:85:40:0,85,1188 +20 10068558 . G . . END=10068560 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:91:42:0,91,1262 +20 10068561 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1304 +20 10068562 . A . . END=10068563 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1261 +20 10068564 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:73:42:0,73,1248 +20 10068565 . T . . END=10068566 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:99:41:0,120,1800 +20 10068567 . G . . END=10068568 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:84:41:0,84,1197 +20 10068569 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:96:43:0,96,1265 +20 10068570 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:84:44:0,84,1255 +20 10068571 . T . . END=10068572 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1316 +20 10068573 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:99:44:0,120,1800 +20 10068574 . T . . END=10068575 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1311 +20 10068576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1355 +20 10068577 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:98:44:0,98,1288 +20 10068578 . T . . END=10068579 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,102,1323 +20 10068580 . G . . END=10068581 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1207 +20 10068582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,120,1800 +20 10068583 . C . . END=10068584 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:92:42:0,92,1193 +20 10068585 . G . . END=10068586 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:86:40:0,86,1180 +20 10068587 . C . . END=10068588 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:90:41:0,90,1154 +20 10068589 . T . . END=10068591 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:99:40:0,120,1280 +20 10068592 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:42:93:42:0,93,1194 +20 10068593 . G . . END=10068594 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:75:40:0,75,1169 +20 10068595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:99:43:0,107,1244 +20 10068596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:96:43:0,96,1269 +20 10068597 . T . . END=10068601 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:44:0,99,1312 +20 10068602 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:84:45:0,84,1234 +20 10068603 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:92:45:0,92,1221 +20 10068604 . C . . END=10068606 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:45:0,101,1296 +20 10068607 . C . . END=10068608 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:94:43:0,94,1240 +20 10068609 . T . . END=10068617 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:99:45:0,102,1261 +20 10068618 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:93:46:0,93,1337 +20 10068619 . A . . END=10068624 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:46:99:44:0,99,1259 +20 10068625 . C . . END=10068626 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:44:96:43:0,96,1209 +20 10068627 . T . . END=10068628 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:45:99:44:0,99,1285 +20 10068629 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:43:76:43:0,76,1163 +20 10068630 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:99:41:0,111,1203 +20 10068631 . A . . END=10068632 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:90:41:0,90,1189 +20 10068633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:77:40:0,77,1127 +20 10068634 . T . . END=10068636 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:87:40:0,87,1146 +20 10068637 . C . . END=10068638 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:39:0,99,1485 +20 10068639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:68:40:0,68,1135 +20 10068640 . G . . END=10068641 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1107 +20 10068642 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:78:37:0,78,1085 +20 10068643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:82:38:0,82,1139 +20 10068644 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:96:35:0,96,1440 +20 10068645 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:72:35:0,72,1015 +20 10068646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:87:33:0,87,965 +20 10068647 . G . . END=10068648 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:70:34:0,70,933 +20 10068649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:96:35:0,96,1440 +20 10068650 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:99:35:0,99,1485 +20 10068651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:56:36:0,56,975 +20 10068652 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:36:75:36:0,75,1022 +20 10068653 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:60:37:0,60,1005 +20 10068654 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:84:39:0,84,1112 +20 10068655 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,111,1665 +20 10068656 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:88:40:0,88,1136 +20 10068657 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,114,1710 +20 10068658 . T . . END=10068659 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1109 +20 10068660 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:76:40:0,76,1107 +20 10068661 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:37:99:37:0,111,1154 +20 10068662 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:62:39:0,62,1075 +20 10068663 . A . . END=10068664 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1110 +20 10068665 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:70:40:0,70,1086 +20 10068666 . T . . END=10068667 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:81:38:0,81,1109 +20 10068668 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,105,1575 +20 10068669 . G . . END=10068670 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:39:80:38:0,80,1097 +20 10068671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:90:41:0,90,1165 +20 10068672 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:41:89:41:0,89,1205 +20 10068673 . G . . END=10068674 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:40:99:40:0,99,1485 +20 10068675 . G . . END=10068676 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:38:84:36:0,84,1039 +20 10068677 . T . . END=10068686 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:35:90:32:0,90,1350 +20 10068687 . G . . END=10068690 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:87:32:0,87,1305 +20 10068691 . T . . END=10068694 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,1350 +20 10068695 . G . . END=10068696 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:87:32:0,87,1305 +20 10068697 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:33:90:33:0,90,1350 +20 10068698 . A . . END=10068710 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:81:28:0,81,989 +20 10068711 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:73:29:0,73,807 +20 10068712 . C . . END=10068718 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:81:28:0,81,1215 +20 10068719 . G . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068720 . A . . END=10068727 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:30:87:29:0,87,943 +20 10068728 . A . . END=10068732 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068733 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:29:87:29:0,87,932 +20 10068734 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:31:90:31:0,90,1350 +20 10068735 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:81:32:0,81,973 +20 10068736 . G . . END=10068737 GT:DP:GQ:MIN_DP:PL ./.:54:99:40:0,105,1575 ./.:32:90:32:0,90,1350 +20 10068738 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:98:60:0,98,2062 ./.:33:87:32:0,87,1305 +20 10068739 . A . . END=10068741 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:87:32:0,87,1305 +20 10068742 . C . . END=10068747 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:90:33:0,90,1350 +20 10068748 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:83:32:0,83,996 +20 10068749 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:90:31:0,90,1350 +20 10068750 . A . . END=10068759 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:81:31:0,81,1215 +20 10068760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:75:29:0,75,923 +20 10068761 . A . . END=10068763 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:81:28:0,81,1215 +20 10068764 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:73:30:0,73,931 +20 10068765 . A . . END=10068773 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:81:29:0,81,1215 +20 10068774 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:78:30:0,78,908 +20 10068775 . C . . END=10068781 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:30:84:29:0,84,880 +20 10068782 . G . . END=10068789 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:90:30:0,90,908 +20 10068790 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:84:31:0,84,1260 +20 10068791 . T . . END=10068808 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:72:25:0,72,773 +20 10068809 . A . . END=10068813 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:28:81:27:0,81,874 +20 10068814 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:28:73:28:0,73,861 +20 10068815 . A . . END=10068818 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:29:82:28:0,82,862 +20 10068819 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:93:33:0,93,1395 +20 10068820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10068821 . A . . END=10068822 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:96:34:0,96,1440 +20 10068823 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:99:34:0,99,1485 +20 10068824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:67:35:0,67,963 +20 10068825 . A . . END=10068863 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:99:35:0,99,1153 +20 10068864 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:91:40:0,91,1086 +20 10068865 . C . . END=10068866 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:41:99:40:0,111,1665 +20 10068867 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:90:40:0,90,1147 +20 10068868 . A . . END=10068875 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:40:99:38:0,104,1156 +20 10068876 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:41:94:41:0,94,1191 +20 10068877 . A . . END=10068879 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:99:38:0,100,1121 +20 10068880 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:72:39:0,72,1066 +20 10068881 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:39:63:39:0,63,1072 +20 10068882 . A . . END=10068886 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10068887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:95:37:0,95,1070 +20 10068888 . A . . END=10068889 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10068890 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:36:59:36:0,59,1000 +20 10068891 . T . . END=10068892 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:92:35:0,92,998 +20 10068893 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:59:34:0,59,961 +20 10068894 . T . . END=10068896 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:34:0,99,1485 +20 10068897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:71:34:0,71,900 +20 10068898 . C . . END=10068899 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:36:99:36:0,99,1485 +20 10068900 . G . . END=10068901 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:85:35:0,85,993 +20 10068902 . C . . END=10068906 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:33:0,99,1015 +20 10068907 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:85:34:0,85,987 +20 10068908 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:64:35:0,64,972 +20 10068909 . A . . END=10068912 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:35:0,99,1485 +20 10068913 . G . . END=10068914 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:33:96:32:0,96,998 +20 10068915 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:85:34:0,85,983 +20 10068916 . T . . END=10068925 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:99:33:0,99,1009 +20 10068926 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:96:34:0,96,1440 +20 10068927 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:87:34:0,87,976 +20 10068928 . G . . END=10068932 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10068933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:67:32:0,67,951 +20 10068934 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:93:35:0,93,1395 +20 10068935 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:35:89:35:0,89,1020 +20 10068936 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:93:34:0,93,1395 +20 10068937 . T . . END=10068938 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:87:34:0,87,1305 +20 10068939 . A . . END=10068940 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10068941 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:79:32:0,79,936 +20 10068942 . A . . END=10068945 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:34:90:33:0,90,1350 +20 10068946 . G . . END=10068949 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:32:81:31:0,81,1215 +20 10068950 . A . . END=10068958 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:31:75:29:0,75,1125 +20 10068959 . A . . END=10068973 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:26:60:24:0,60,900 +20 10068974 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:24:57:24:0,57,855 +20 10068975 . A . . END=10068980 GT:DP:GQ:MIN_DP:PL ./.:76:99:53:0,120,1800 ./.:26:60:25:0,60,766 +20 10068981 . G A, . . DP=88;ExcessHet=3.01;RAW_MQandDP=316800,88 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2532,184,0,2532,184,2532:0,0,27,34 ./.:0,26,0:26:78:845,78,0,845,78,845:0,0,14,12 +20 10068982 . A . . END=10068983 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:69:25:0,69,1035 +20 10068984 . A . . END=10068991 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:72:24:0,72,772 +20 10068992 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:26:0,62,774 +20 10068993 . A . . END=10069002 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,793 +20 10069003 . A . . END=10069006 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:27:0,81,827 +20 10069007 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:69:27:0,69,830 +20 10069008 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:75:27:0,75,1125 +20 10069009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:53:27:0,53,829 +20 10069010 . C . . END=10069024 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:72:25:0,72,802 +20 10069025 . C . . END=10069028 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:81:27:0,81,812 +20 10069029 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:78:26:0,78,813 +20 10069030 . C . . END=10069031 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:25:0,62,700 +20 10069032 . A . . END=10069038 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:72:26:0,72,786 +20 10069039 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:68:27:0,68,759 +20 10069040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:26:0,72,1080 +20 10069041 . C . . END=10069044 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:62:26:0,62,739 +20 10069045 . G . . END=10069062 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,812 +20 10069063 . C . . END=10069069 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:27:0,81,847 +20 10069070 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:63:30:0,63,825 +20 10069071 . A . . END=10069078 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:81:29:0,81,1215 +20 10069079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,865 +20 10069080 . T . . END=10069082 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:84:29:0,84,1260 +20 10069083 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:76:30:0,76,909 +20 10069084 . C . . END=10069089 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:28:0,81,856 +20 10069090 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069091 . A . . END=10069092 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:87:32:0,87,1305 +20 10069093 . A . . END=10069099 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069100 . A . . END=10069115 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:99:33:0,99,989 +20 10069116 . A . . END=10069119 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:96:34:0,96,1440 +20 10069120 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:81:35:0,81,1003 +20 10069121 . A . . END=10069122 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10069123 . G . . END=10069124 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:99:36:0,99,1485 +20 10069125 . G . . END=10069128 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:34:0,90,1350 +20 10069129 . A . . END=10069131 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:81:33:0,81,1007 +20 10069132 . G . . END=10069135 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:33:0,90,986 +20 10069136 . G . . END=10069144 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:84:29:0,84,1260 +20 10069145 . A . . END=10069167 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:31:0,90,955 +20 10069168 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:74:32:0,74,1015 +20 10069169 . G . . END=10069174 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:75:32:0,75,1016 +20 10069176 . G . . END=10069180 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069181 . T . . END=10069183 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069184 . T . . END=10069188 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:32:0,90,1350 +20 10069189 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069190 . T . . END=10069211 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1117 +20 10069212 . A . . END=10069217 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:34:0,99,1485 +20 10069218 . G . . END=10069219 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:93:34:0,93,1395 +20 10069220 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:77:34:0,77,1026 +20 10069221 . G . . END=10069230 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:93:32:0,93,1065 +20 10069231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:88:33:0,88,1039 +20 10069232 . G . . END=10069233 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:93:33:0,93,1395 +20 10069234 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:87:33:0,87,1005 +20 10069235 . C . . END=10069239 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:90:33:0,90,1350 +20 10069240 . C . . END=10069245 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:81:32:0,81,1215 +20 10069246 . A . . END=10069250 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:78:30:0,78,1170 +20 10069251 . T . . END=10069254 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:81:29:0,81,1215 +20 10069255 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:49:27:0,49,768 +20 10069256 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:28:0,81,1215 +20 10069257 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:78:26:0,78,832 +20 10069258 . T . . END=10069259 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:81:27:0,81,847 +20 10069260 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:78:27:0,78,1170 +20 10069261 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:66:28:0,66,859 +20 10069262 . T . . END=10069284 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:27:72:25:0,72,804 +20 10069285 . T . . END=10069287 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:66:26:0,66,807 +20 10069288 . A . . END=10069297 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:26:0,72,1080 +20 10069298 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:41:25:0,41,719 +20 10069299 . G . . END=10069303 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:72:25:0,72,1080 +20 10069304 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:23:69:23:0,69,734 +20 10069305 . T . . END=10069327 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,726 +20 10069328 . T . . END=10069330 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:69:23:0,69,722 +20 10069331 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:46:24:0,46,694 +20 10069332 . T . . END=10069343 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:60:24:0,60,900 +20 10069344 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:25:57:25:0,57,855 +20 10069345 . G . . END=10069349 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:60:24:0,60,900 +20 10069350 . G . . END=10069351 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:48:25:0,48,707 +20 10069352 . G . . END=10069353 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:63:22:0,63,945 +20 10069354 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:22:52:22:0,52,621 +20 10069355 . T . . END=10069357 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:24:63:23:0,63,945 +20 10069358 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:43:26:0,43,669 +20 10069359 . T . . END=10069364 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:26:72:25:0,72,757 +20 10069365 . T . . END=10069372 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:81:27:0,81,790 +20 10069373 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,869 +20 10069374 . A . . END=10069375 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:84:30:0,84,1260 +20 10069376 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:74:30:0,74,876 +20 10069377 . A . . END=10069385 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:84:29:0,84,1260 +20 10069386 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:71:30:0,71,848 +20 10069387 . T . . END=10069403 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:81:28:0,81,902 +20 10069404 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:69:28:0,69,810 +20 10069405 . T . . END=10069411 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:70:26:0,70,807 +20 10069412 . A . . END=10069418 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:28:81:27:0,81,827 +20 10069419 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:29:59:29:0,59,837 +20 10069420 . C . . END=10069421 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:30:0,90,910 +20 10069422 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:75:30:0,75,880 +20 10069423 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:66:31:0,66,909 +20 10069424 . T . . END=10069427 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:30:0,90,946 +20 10069428 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:30:87:30:0,87,1305 +20 10069429 . C . . END=10069430 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:90:31:0,90,1350 +20 10069431 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:31:87:31:0,87,1305 +20 10069432 . T . . END=10069443 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1350 +20 10069444 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:78:32:0,78,903 +20 10069445 . G . . END=10069453 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:32:90:31:0,90,940 +20 10069454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:86:33:0,86,1001 +20 10069455 . T . . END=10069457 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:93:33:0,93,1395 +20 10069458 . T . . END=10069465 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1004 +20 10069466 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:88:35:0,88,967 +20 10069467 . T . . END=10069485 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:35:0,102,1090 +20 10069486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:93:40:0,93,1150 +20 10069487 . G . . END=10069493 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:39:0,99,1485 +20 10069494 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:92:40:0,92,1216 +20 10069495 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:77:41:0,77,1152 +20 10069496 . G . . END=10069509 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,99,1485 +20 10069510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:77:37:0,77,1009 +20 10069511 . T . . END=10069517 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,102,1112 +20 10069518 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:95:37:0,95,1101 +20 10069519 . C . . END=10069524 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:35:0,105,1114 +20 10069525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:78:39:0,78,1141 +20 10069526 . T . . END=10069537 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:38:0,104,1165 +20 10069538 . G . . END=10069539 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:44:92:43:0,92,1207 +20 10069540 . A . . END=10070051 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:47:99:37:0,99,1163 +20 10070052 . G . . END=10070057 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:33:0,93,1395 +20 10070058 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:38:0,102,1530 +20 10070059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:92:37:0,92,1128 +20 10070060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:99:36:0,102,1530 +20 10070061 . T . . END=10070063 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10070064 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:37:0,102,1530 +20 10070065 . A . . END=10070068 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:34:0,93,1395 +20 10070069 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:87:35:0,87,1078 +20 10070070 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:96:37:0,96,1440 +20 10070071 . T . . END=10070073 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070074 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:87:35:0,87,953 +20 10070075 . T . . END=10070077 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:93:32:0,93,1395 +20 10070078 . G . . END=10070079 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:80:37:0,80,1068 +20 10070081 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070082 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:89:35:0,89,1081 +20 10070083 . T . . END=10070098 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:34:0,99,956 +20 10070099 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:96:37:0,96,1081 +20 10070100 . T . . END=10070105 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:37:0,105,1575 +20 10070106 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:91:37:0,91,1037 +20 10070107 . C . . END=10070155 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:36:0,102,1165 +20 10070156 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:85:36:0,85,1056 +20 10070157 . G . . END=10070162 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1000 +20 10070163 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:96:34:0,96,1440 +20 10070164 . C . . END=10070171 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:33:0,99,1002 +20 10070172 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:76:34:0,76,965 +20 10070173 . C . . END=10070192 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:35:0,102,1232 +20 10070193 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:85:39:0,85,1117 +20 10070194 . G . . END=10070233 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:36:0,101,1123 +20 10070234 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:93:39:0,93,1151 +20 10070235 . G . . END=10070259 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,99,1090 +20 10070260 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:94:41:0,94,1207 +20 10070261 . A . . END=10070263 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,99,1485 +20 10070264 . A . . END=10070265 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:36:92:35:0,92,1023 +20 10070266 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:89:35:0,89,1039 +20 10070267 . T . . END=10070272 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:96:34:0,96,1440 +20 10070273 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070274 . A . . END=10070279 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:90:32:0,90,1033 +20 10070280 . G . . END=10070287 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:35:0,99,1485 +20 10070288 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:93:37:0,93,1055 +20 10070289 . C . . END=10070314 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:37:0,103,1113 +20 10070315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:88:40:0,88,1170 +20 10070316 . T . . END=10070328 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:41:99:38:0,102,1530 +20 10070329 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:67:38:0,67,1133 +20 10070330 . T . . END=10070335 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,105,1575 +20 10070336 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:97:38:0,97,1127 +20 10070337 . C . . END=10070356 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:34:0,102,1083 +20 10070357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:84:38:0,84,1175 +20 10070358 . A . . END=10070366 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,102,1530 +20 10070367 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:94:39:0,94,1172 +20 10070368 . A . . END=10070371 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:38:0,102,1131 +20 10070372 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:66:37:0,66,992 +20 10070373 . C . . END=10070412 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:37:0,102,1153 +20 10070413 . A . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:92:40:0,92,1190 +20 10070414 . C . . END=10070421 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:39:0,102,1530 +20 10070422 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:96:39:0,96,1440 +20 10070423 . C . . END=10070425 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070426 . G . . END=10070435 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:34:0,90,1071 +20 10070436 . A . . END=10070441 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:99:37:0,99,1485 +20 10070442 . C . . END=10070443 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:94:37:0,94,1101 +20 10070444 . C . . END=10070493 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:99:36:0,101,1088 +20 10070494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:39:88:39:0,88,1182 +20 10070495 . C . . END=10070520 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:36:0,100,1111 +20 10070521 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:37:85:37:0,85,1074 +20 10070522 . G . . END=10070533 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:38:99:36:0,99,1129 +20 10070534 . T . . END=10070543 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:35:90:33:0,90,1350 +20 10070544 . T . . END=10070545 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:34:86:33:0,86,1014 +20 10070546 . T . . END=10070553 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:93:33:0,93,1395 +20 10070554 . T . . . GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:88:33:0,88,989 +20 10070555 . G . . END=10070564 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:33:90:32:0,90,1350 +20 10070565 . G . . END=10070601 GT:DP:GQ:MIN_DP:PL ./.:74:99:46:0,120,1800 ./.:40:99:36:0,105,1144 +20 10070602 . T C, . . BaseQRankSum=-3.081e+00;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=399364,114;ReadPosRankSum=-6.890e-01 GT:AD:DP:GQ:PL:SB ./.:0,72,0:72:99:2720,216,0,2720,216,2720:0,0,37,35 ./.:21,19,0:40:99:475,0,592,538,649,1187:13,8,8,11 +20 10070603 . A . . END=10070632 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:40:99:38:0,104,1138 +20 10070633 . A . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:42:91:42:0,91,1277 +20 10070634 . G . . END=10070651 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:45:99:43:0,120,1800 +20 10070652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:44:98:44:0,98,1334 +20 10070653 . T . . END=10070893 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:45:99:40:0,99,1230 +20 10070894 . C . . END=10070896 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:41:93:41:0,93,1395 +20 10070897 . G . . END=10070911 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:39:81:39:0,81,1215 +20 10070912 . A . . END=10070914 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:39:78:38:0,78,1170 +20 10070915 . A . . END=10070917 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:40:81:39:0,81,1215 +20 10070918 . C . . . GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:39:75:39:0,75,1125 +20 10070919 . T . . END=10070920 GT:DP:GQ:MIN_DP:PL ./.:90:99:66:0,99,1485 ./.:40:60:38:0,60,900 +20 10070921 . C . . . GT:DP:GQ:MIN_DP:PL ./.:91:90:91:0,90,1350 ./.:40:60:38:0,60,900 +20 10070922 . A . . END=10070923 GT:DP:GQ:MIN_DP:PL ./.:92:57:91:0,57,855 ./.:40:60:38:0,60,900 +20 10070924 . T . . . GT:DP:GQ:MIN_DP:PL ./.:89:18:89:0,18,270 ./.:40:60:38:0,60,900 +20 10070925 . C . . END=10070926 GT:DP:GQ:MIN_DP:PL ./.:87:12:86:0,12,180 ./.:40:60:38:0,60,900 +20 10070927 . C . . END=10070928 GT:DP:GQ:MIN_DP:PL ./.:84:3:83:0,3,45 ./.:40:60:38:0,60,900 +20 10070929 . A . . END=10070932 GT:DP:GQ:MIN_DP:PL ./.:85:0:85:0,0,0 ./.:42:57:41:0,57,855 +20 10070933 . C . . END=10070935 GT:DP:GQ:MIN_DP:PL ./.:85:0:85:0,0,0 ./.:43:62:43:0,62,945 +20 10070936 . T A, . . BaseQRankSum=-1.071e+00;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=427233,122;ReadPosRankSum=0.014 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,81,0:81:99:0|1:10070936_T_A:3660,247,0,3660,247,3660:0,0,44,37 ./.:21,19,0:40:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,12,7,12 +20 10070937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:3:84:0,3,45 ./.:43:63:43:0,63,945 +20 10070938 . G GA, . . BaseQRankSum=-8.020e-01;ClippingRankSum=0.00;DP=117;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=412764,117;ReadPosRankSum=-5.400e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,79,0:79:99:0|1:10070936_T_A:3694,250,0,3694,250,3694:0,0,43,36 ./.:19,19,0:38:99:0|1:10070936_T_A:725,0,1215,788,1272,2060:9,10,7,12 +20 10070939 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:0:83:0,0,0 ./.:40:0:40:0,0,113 +20 10070940 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:40:99:40:0,120,1240 +20 10070941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:41:94:41:0,94,1235 +20 10070942 . T . . END=10070958 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:44:99:40:0,108,1250 +20 10070959 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:44:96:44:0,96,1303 +20 10070960 . G . . END=10070969 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:41:99:38:0,102,1530 +20 10070970 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:38:98:38:0,98,1109 +20 10070971 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:39:99:39:0,105,1575 +20 10070972 . A . . END=10070977 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:38:96:36:0,96,1440 +20 10070978 . C . . END=10070982 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:37:99:36:0,99,1485 +20 10070983 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:89:35:0,89,1055 +20 10070984 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:33:74:33:0,74,962 +20 10070985 . G . . END=10070989 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:93:33:0,93,1395 +20 10070990 . G . . END=10070992 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:99:34:0,99,1485 +20 10070993 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:96:36:0,96,1440 +20 10070994 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:37:99:37:0,99,1485 +20 10070995 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:81:36:0,81,1078 +20 10070996 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:60:35:0,60,991 +20 10070997 . A . . END=10070998 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:99:35:0,99,1485 +20 10070999 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:84:34:0,84,1014 +20 10071000 . T . . END=10071003 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:90:34:0,90,1028 +20 10071004 . T . . END=10071009 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:36:99:35:0,99,1485 +20 10071010 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:82:35:0,82,1048 +20 10071011 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071012 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:32:96:32:0,96,1031 +20 10071013 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:96:34:0,96,1440 +20 10071015 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:34:99:34:0,99,1485 +20 10071016 . A . . END=10071019 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:35:93:34:0,93,1395 +20 10071020 . G . . END=10071134 GT:DP:GQ:MIN_DP:PL ./.:77:99:67:0,120,1800 ./.:47:99:35:0,102,1106 +20 10071135 . C T, . . BaseQRankSum=1.77;ClippingRankSum=0.00;DP=129;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=456123,129;ReadPosRankSum=2.25 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:3286,238,0,3286,238,3286:0,0,34,45 ./.:1,48,0:49:99:1481,137,0,1483,144,1490:0,1,21,27 +20 10071136 . T . . END=10071186 GT:DP:GQ:MIN_DP:PL ./.:83:99:78:0,120,1800 ./.:51:99:45:0,115,1316 +20 10071187 . G A, . . BaseQRankSum=2.97;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=458041,128;ReadPosRankSum=-2.080e-01 GT:AD:DP:GQ:PL:SB ./.:0,82,0:82:99:3439,246,0,3439,246,3439:0,0,30,52 ./.:21,24,0:45:99:619,0,444,681,516,1197:13,8,10,14 +20 10071188 . G . . END=10071301 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:43:99:39:0,105,1229 +20 10071302 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:94:42:0,94,1193 +20 10071303 . T . . END=10071337 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:41:99:38:0,105,1151 +20 10071338 . G . . END=10071340 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:38:96:38:0,96,1440 +20 10071341 . C . . END=10071380 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:40:99:37:0,99,1189 +20 10071381 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:95:42:0,95,1187 +20 10071382 . T . . END=10071705 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:47:99:40:0,104,1209 +20 10071706 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:45:96:45:0,96,1325 +20 10071707 . A . . END=10071780 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:49:99:45:0,120,1800 +20 10071781 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:45:86:45:0,86,1292 +20 10071782 . C . . END=10071863 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:43:99:39:0,99,1153 +20 10071864 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:36:74:36:0,74,1010 +20 10071865 . C . . END=10071883 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:39:99:38:0,100,1158 +20 10071884 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:41:96:41:0,96,1187 +20 10071885 . C . . END=10071889 GT:DP:GQ:MIN_DP:PL ./.:61:99:44:0,111,1710 ./.:42:99:40:0,102,1207 +20 10071890 . T C, . . BaseQRankSum=-4.435e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=357769,100;ReadPosRankSum=0.584 GT:AD:DP:GQ:PL:SB ./.:0,57,0:57:99:2003,171,0,2003,171,2003:0,0,28,29 ./.:20,23,0:43:99:488,0,521,548,590,1138:10,10,9,14 +20 10071891 . G . . END=10072038 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:44:99:39:0,101,1226 +20 10072039 . C . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:93:41:0,93,1189 +20 10072040 . A . . END=10072092 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:99:37:0,101,1113 +20 10072093 . T . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:40:98:40:0,98,1264 +20 10072094 . G . . END=10072488 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:52:99:38:0,99,1218 +20 10072489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:93:41:0,93,1120 +20 10072490 . C . . END=10072499 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:43:99:42:0,101,1149 +20 10072500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:41:86:41:0,86,1135 +20 10072501 . A . . END=10072504 GT:DP:GQ:MIN_DP:PL ./.:65:99:51:0,120,1800 ./.:43:99:41:0,120,1800 +20 10072505 . A G, . . BaseQRankSum=-1.080e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=374400,104;ReadPosRankSum=0.816 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2128,191,0,2128,191,2128:0,0,34,30 ./.:19,20,0:39:99:483,0,448,539,508,1047:8,11,10,10 +20 10072506 . C . . END=10072589 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:44:99:40:0,104,1218 +20 10072590 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:91:41:0,91,1228 +20 10072591 . T . . END=10072628 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:37:0,99,1255 +20 10072629 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:38:0,96,1440 +20 10072630 . C . . END=10072631 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,99,1485 +20 10072632 . T . . END=10072634 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:96:36:0,96,1440 +20 10072635 . G . . END=10072642 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072643 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1004 +20 10072644 . C . . END=10072654 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072655 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:97:36:0,97,1078 +20 10072656 . C . . END=10072664 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:36:0,105,1575 +20 10072665 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:93:40:0,93,1226 +20 10072666 . A . . END=10072682 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,105,1249 +20 10072683 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:96:39:0,96,1225 +20 10072684 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,108,1620 +20 10072685 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:91:37:0,91,1115 +20 10072686 . G . . END=10072688 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,105,1575 +20 10072689 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:38:0,96,1146 +20 10072690 . T . . END=10072710 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1031 +20 10072711 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:92:35:0,92,1023 +20 10072712 . A . . END=10072729 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,102,1089 +20 10072730 . G . . END=10072731 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:93:36:0,93,1066 +20 10072732 . T . . END=10072734 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:36:0,99,1485 +20 10072735 . G . . END=10072738 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1395 +20 10072739 . C . . END=10072745 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:36:0,99,1485 +20 10072746 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:84:39:0,84,1083 +20 10072747 . A . . END=10072750 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,111,1107 +20 10072751 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1100 +20 10072752 . T . . END=10072774 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,100,1070 +20 10072775 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:84:41:0,84,1074 +20 10072776 . C . . END=10072804 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:36:0,100,1067 +20 10072805 . A . . END=10072809 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:35:0,96,1440 +20 10072810 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10072811 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10072812 . A . . END=10072830 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:34:0,99,1101 +20 10072831 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:94:37:0,94,1146 +20 10072832 . G . . END=10072838 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,105,1575 +20 10072839 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:89:37:0,89,1143 +20 10072840 . C . . END=10072871 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:36:0,102,1158 +20 10072872 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:98:38:0,98,1118 +20 10072873 . T . . END=10072883 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:39:0,99,1222 +20 10072884 . A . . END=10072890 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:96:36:0,96,1440 +20 10072891 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1038 +20 10072892 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10072893 . C . . END=10072897 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1054 +20 10072898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:80:36:0,80,1046 +20 10072899 . A . . END=10072909 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:35:0,99,1126 +20 10072910 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:71:35:0,71,1006 +20 10072911 . G . . END=10072913 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10072914 . G . . END=10072915 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:94:35:0,94,997 +20 10072916 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10072917 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10072918 . T . . END=10072929 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:36:0,99,1119 +20 10072930 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:78:36:0,78,1062 +20 10072931 . C . . END=10072932 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,99,1485 +20 10072933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:88:34:0,88,999 +20 10072934 . C . . END=10072935 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:32:0,96,904 +20 10072936 . G . . END=10072937 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1002 +20 10072938 . C . . END=10072946 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,99,1095 +20 10072947 . G . . END=10072951 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10072952 . T . . END=10072964 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10072965 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:98:38:0,98,1131 +20 10072966 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,105,1575 +20 10072967 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:95:37:0,95,1119 +20 10072968 . C . . END=10072990 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:36:0,99,1142 +20 10072991 . A . . END=10072996 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:96:38:0,96,1440 +20 10072997 . G . . END=10073091 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:34:0,99,1059 +20 10073092 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1073 +20 10073093 . T . . END=10073096 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:39:0,106,1190 +20 10073097 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:87:40:0,87,1147 +20 10073098 . C . . END=10073129 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:47:99:41:0,114,1244 +20 10073130 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:45:95:45:0,95,1349 +20 10073131 . G . . END=10073157 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:45:99:41:0,102,1292 +20 10073158 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:94:42:0,94,1302 +20 10073159 . A . . END=10073175 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:40:0,111,1665 +20 10073176 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:97:43:0,97,1349 +20 10073177 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:43:0,102,1375 +20 10073178 . A . . END=10073180 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:92:42:0,92,1280 +20 10073181 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:43:0,101,1309 +20 10073182 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:82:42:0,82,1239 +20 10073183 . T . . END=10073263 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:46:99:39:0,100,1247 +20 10073264 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:94:39:0,94,1135 +20 10073265 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:39:0,108,1620 +20 10073266 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:92:37:0,92,1070 +20 10073267 . G . . END=10073276 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:36:0,104,1165 +20 10073277 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:88:39:0,88,1177 +20 10073278 . A . . END=10073279 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:94:39:0,94,1122 +20 10073280 . T . . END=10073337 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:37:0,99,1166 +20 10073338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:85:37:0,85,1156 +20 10073339 . T . . END=10073344 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:34:0,90,1116 +20 10073345 . A . . END=10073348 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1007 +20 10073349 . G . . END=10073350 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:33:0,90,1073 +20 10073351 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:74:34:0,74,1017 +20 10073352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1082 +20 10073353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:88:35:0,88,1083 +20 10073354 . A . . END=10073360 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:33:0,99,1055 +20 10073361 . T . . END=10073364 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:32:0,96,1019 +20 10073365 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:84:34:0,84,1023 +20 10073366 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,943 +20 10073367 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:98:33:0,98,931 +20 10073368 . A . . END=10073369 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1070 +20 10073370 . G . . END=10073371 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10073372 . C . . END=10073377 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:34:0,102,1089 +20 10073378 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:95:36:0,95,1044 +20 10073379 . T . . END=10073390 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:35:0,102,1140 +20 10073391 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:97:38:0,97,1126 +20 10073392 . G . . END=10073420 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:38:0,99,1149 +20 10073421 . A . . END=10073425 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:90:39:0,90,1350 +20 10073426 . T . . END=10073434 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:84:34:0,84,1260 +20 10073435 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:78:31:0,78,937 +20 10073436 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:84:31:0,84,1260 +20 10073437 . T . . END=10073443 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:31:0,90,1350 +20 10073444 . G . . END=10073448 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10073449 . G . . END=10073450 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10073451 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:83:33:0,83,1017 +20 10073452 . G . . END=10073462 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1080 +20 10073463 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:35:0,93,1071 +20 10073464 . T . . END=10073472 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:36:0,108,1097 +20 10073473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:71:39:0,71,1136 +20 10073474 . A . . END=10073489 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:34:0,102,1087 +20 10073490 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:90:39:0,90,1177 +20 10073491 . C . . END=10073494 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:37:0,99,1485 +20 10073495 . A . . END=10073498 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:92:36:0,92,1129 +20 10073499 . G . . END=10073500 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:37:0,99,1485 +20 10073501 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:96:37:0,96,1098 +20 10073502 . A . . END=10073510 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:33:0,99,1017 +20 10073511 . G . . END=10073512 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:35:0,96,1440 +20 10073513 . T . . END=10073551 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:33:0,99,1013 +20 10073552 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:93:31:0,93,978 +20 10073553 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,936 +20 10073554 . G . . END=10073560 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:93:31:0,93,963 +20 10073561 . C . . END=10073564 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:33:0,99,1029 +20 10073565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:83:33:0,83,1000 +20 10073566 . T . . END=10073567 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:96:34:0,96,1440 +20 10073568 . A . . END=10073569 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:99:34:0,99,1485 +20 10073570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:31:93:31:0,93,969 +20 10073571 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:99:33:0,99,1003 +20 10073572 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:76:35:0,76,947 +20 10073573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:99:35:0,99,1485 +20 10073574 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1007 +20 10073575 . C . . END=10073584 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:99:34:0,99,1069 +20 10073585 . A . . END=10073600 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:93:32:0,93,986 +20 10073601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:86:34:0,86,1027 +20 10073602 . A . . END=10073610 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:31:0,90,965 +20 10073611 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:86:35:0,86,992 +20 10073612 . C . . END=10073614 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:93:34:0,93,1034 +20 10073615 . C . . END=10073699 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:35:0,105,1029 +20 10073700 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:83:38:0,83,1053 +20 10073701 . A . . END=10073722 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:39:0,106,1219 +20 10073723 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:96:41:0,96,1160 +20 10073724 . G . . END=10073758 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:38:0,99,1160 +20 10073759 . T . . END=10073768 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:93:34:0,93,1395 +20 10073769 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:87:33:0,87,1023 +20 10073770 . C . . END=10073771 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:33:0,90,1350 +20 10073772 . A . . END=10073775 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:32:84:31:0,84,1260 +20 10073776 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:90:33:0,90,1350 +20 10073777 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:81:33:0,81,970 +20 10073778 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:34:0,90,1350 +20 10073779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:87:33:0,87,1305 +20 10073780 . A . . END=10073787 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:34:90:32:0,90,1350 +20 10073788 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:85:35:0,85,1030 +20 10073789 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:33:96:33:0,96,1440 +20 10073790 . T . . END=10073807 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:35:0,99,1150 +20 10073808 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:85:41:0,85,1124 +20 10073809 . C . . END=10073818 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:41:0,114,1295 +20 10073819 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:89:41:0,89,1213 +20 10073820 . T . . END=10073822 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,114,1710 +20 10073823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:87:40:0,87,1216 +20 10073824 . T . . END=10073829 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:39:0,108,1154 +20 10073830 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:91:41:0,91,1215 +20 10073831 . T . . END=10073836 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:99:40:0,112,1269 +20 10073837 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:95:37:0,95,1115 +20 10073838 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,117,1755 +20 10073839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:92:40:0,92,1218 +20 10073840 . T . . END=10073847 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:40:0,108,1620 +20 10073848 . G . . END=10073849 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:41:93:40:0,93,1150 +20 10073850 . T . . END=10073854 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,108,1123 +20 10073855 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:95:39:0,95,1159 +20 10073856 . G . . END=10073868 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,100,1132 +20 10073869 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:95:38:0,95,1137 +20 10073870 . C . . END=10073890 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:38:0,103,1209 +20 10073891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:93:39:0,93,1204 +20 10073892 . T . . END=10073897 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:39:99:37:0,102,1530 +20 10073898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:77:36:0,77,1037 +20 10073899 . T . . END=10073900 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:94:37:0,94,1132 +20 10073901 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:86:35:0,86,1036 +20 10073902 . G . . END=10073906 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:96:35:0,96,1440 +20 10073907 . C . . END=10073908 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,99,1485 +20 10073909 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:94:35:0,94,1085 +20 10073910 . T . . END=10073928 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:37:0,102,1121 +20 10073929 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:37:77:37:0,77,1094 +20 10073930 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,99,1485 +20 10073931 . C . . END=10073932 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:35:0,90,1350 +20 10073933 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:87:35:0,87,1305 +20 10073934 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:90:36:0,90,1350 +20 10073935 . A . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:85:35:0,85,1075 +20 10073936 . A . . END=10073943 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:90:35:0,90,1042 +20 10073944 . C . . END=10073945 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:36:0,102,1530 +20 10073946 . G . . END=10073954 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:93:35:0,93,1037 +20 10073955 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:99:38:0,99,1485 +20 10073956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:38:86:38:0,86,1142 +20 10073957 . C . . END=10073967 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:33:0,99,1029 +20 10073968 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:96:36:0,96,1051 +20 10073969 . C . . END=10073976 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10073977 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:35:91:35:0,91,945 +20 10073978 . G . . END=10073982 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:99:35:0,99,1485 +20 10073983 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:36:92:36:0,92,1043 +20 10073984 . G . . END=10074121 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:43:99:36:0,100,1126 +20 10074122 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:89:40:0,89,1154 +20 10074123 . G . . END=10074125 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,117,1755 +20 10074126 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:95:40:0,95,1091 +20 10074127 . A . . END=10074129 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:99:40:0,102,1229 +20 10074130 . C . . . GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:40:94:40:0,94,1163 +20 10074131 . C . . END=10074186 GT:DP:GQ:MIN_DP:PL ./.:71:99:40:0,102,1530 ./.:42:99:37:0,108,1121 +20 10074187 . A G, . . BaseQRankSum=-6.360e-01;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=434523,123;ReadPosRankSum=2.42 GT:AD:DP:GQ:PL:SB ./.:0,79,0:79:99:3130,238,0,3130,238,3130:0,0,36,43 ./.:17,26,0:43:99:694,0,403,745,481,1226:10,7,16,10 +20 10074188 . T . . END=10074239 GT:DP:GQ:MIN_DP:PL ./.:80:99:71:0,120,1800 ./.:49:99:44:0,113,1271 +20 10074240 . T C, . . BaseQRankSum=-3.298e+00;ClippingRankSum=0.00;DP=136;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=487369,136;ReadPosRankSum=-1.192e+00 GT:AD:DP:GQ:PL:SB ./.:0,85,0:85:99:3435,255,0,3435,255,3435:0,0,47,38 ./.:24,25,0:49:99:593,0,646,665,721,1386:13,11,14,11 +20 10074241 . A . . END=10074667 GT:DP:GQ:MIN_DP:PL ./.:74:99:41:0,105,1544 ./.:51:99:39:0,102,1161 +20 10074668 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:96:41:0,96,1440 ./.:37:81:37:0,81,1071 +20 10074669 . A . . END=10074671 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:38:96:36:0,96,1440 +20 10074672 . G . . END=10074674 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:38:99:37:0,99,1485 +20 10074675 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,99,1485 ./.:37:90:36:0,90,1350 +20 10074676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:44:96:44:0,96,1440 ./.:37:90:36:0,90,1350 +20 10074677 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:37:85:37:0,85,1085 +20 10074678 . C . . END=10074695 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:90:33:0,90,1350 +20 10074696 . G . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:35:0,99,1485 +20 10074697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:90:35:0,90,1035 +20 10074698 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:35:0,102,1530 +20 10074699 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:94:35:0,94,1061 +20 10074700 . A . . END=10074703 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:99:34:0,102,1040 +20 10074704 . A . . . GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:35:93:35:0,93,1038 +20 10074705 . A . . END=10074715 GT:DP:GQ:MIN_DP:PL ./.:61:99:41:0,99,1485 ./.:36:99:34:0,102,952 +20 10074716 . G A, . . DP=100;ExcessHet=3.01;RAW_MQandDP=354482,100 GT:AD:DP:GQ:PL:SB ./.:0,64,0:64:99:2429,192,0,2429,192,2429:0,0,25,39 ./.:0,33,0:33:99:1008,99,0,1008,99,1008:0,0,11,22 +20 10074717 . C . . END=10074718 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:35:0,99,1485 +20 10074719 . C . . END=10074720 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:96:35:0,96,1440 +20 10074721 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:36:0,99,1485 +20 10074722 . G . . END=10074723 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:37:93:37:0,93,1395 +20 10074724 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:39:99:39:0,99,1485 +20 10074725 . A . . END=10074728 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:40:96:38:0,96,1440 +20 10074729 . G . . END=10074740 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:38:99:37:0,99,1485 +20 10074741 . C . . END=10074755 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:90:32:0,90,1350 +20 10074756 . G . . END=10074763 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1048 +20 10074764 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:32:96:32:0,96,1048 +20 10074765 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1060 +20 10074766 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:96:33:0,96,1440 +20 10074767 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10074768 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074769 . G . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:89:34:0,89,1073 +20 10074770 . A . . END=10074771 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074772 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:99:35:0,99,1485 +20 10074773 . C . . END=10074774 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:96:34:0,96,1440 +20 10074775 . G . . END=10074776 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:36:99:36:0,99,1485 +20 10074777 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:78:35:0,78,1051 +20 10074778 . C . . END=10074792 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:93:32:0,93,1015 +20 10074793 . C . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:33:99:33:0,99,1012 +20 10074794 . C . . END=10074796 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:34:96:34:0,96,1440 +20 10074797 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:35:76:35:0,76,1017 +20 10074798 . A . . END=10074805 GT:DP:GQ:MIN_DP:PL ./.:72:99:66:0,120,1800 ./.:37:99:36:0,105,1103 +20 10074806 . G A, . . BaseQRankSum=2.32;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=383277,108;ReadPosRankSum=-1.000e-01 GT:AD:DP:GQ:PL:SB ./.:0,71,0:71:99:2846,213,0,2846,213,2846:0,0,33,38 ./.:14,23,0:37:99:613,0,307,655,375,1031:8,6,8,15 +20 10074807 . C . . END=10075042 GT:DP:GQ:MIN_DP:PL ./.:68:99:56:0,120,1800 ./.:42:99:35:0,100,1070 +20 10075043 . T C, . . DP=102;ExcessHet=3.01;RAW_MQandDP=364441,102 GT:AD:DP:GQ:PL:SB ./.:0,61,0:61:99:2434,184,0,2434,184,2434:0,0,36,25 ./.:0,39,0:39:99:1177,116,0,1177,116,1177:0,0,25,14 +20 10075044 . C . . END=10075141 GT:DP:GQ:MIN_DP:PL ./.:55:99:51:0,120,1800 ./.:42:99:37:0,99,1187 +20 10075142 . G A, . . BaseQRankSum=-2.480e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.01;MQRankSum=-1.359e+00;RAW_MQandDP=222959,65;ReadPosRankSum=-2.348e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:61,4,0:65:92:.:0,92,2165,183,2177,2268:36,25,0,4 ./.:.:42:99:37:0,99,1187,99,1187,1187 +20 10075143 . A . . END=10075145 GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:42:99:37:0,99,1187 +20 10075146 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:38:98:38:0,98,1143 +20 10075147 . C . . END=10075167 GT:DP:GQ:MIN_DP:PL ./.:81:99:68:0,120,1800 ./.:39:99:36:0,102,1530 +20 10075168 . C T, . . DP=121;ExcessHet=3.01;RAW_MQandDP=428781,121 GT:AD:DP:GQ:PL:SB ./.:0,88,0:88:99:3641,264,0,3641,264,3641:0,0,38,50 ./.:0,33,0:33:99:1031,99,0,1031,99,1031:0,0,18,15 +20 10075169 . G . . END=10075173 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:36:99:36:0,99,1124 +20 10075174 . A . . END=10075182 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:36:92:35:0,92,1048 +20 10075183 . C . . END=10075188 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:37:99:35:0,99,1119 +20 10075189 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:37:98:37:0,98,1107 +20 10075190 . A . . END=10075202 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:37:99:36:0,100,1083 +20 10075203 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:38:91:38:0,91,1134 +20 10075204 . C . . END=10075205 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:40:99:40:0,111,1665 +20 10075206 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:40:97:40:0,97,1236 +20 10075207 . A . . END=10075209 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:40:99:40:0,114,1710 +20 10075210 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:40:89:40:0,89,1211 +20 10075211 . C . . END=10075462 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:48:99:37:0,101,1025 +20 10075463 . G A, . . BaseQRankSum=0.247;ClippingRankSum=0.00;DP=91;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=151200,42;ReadPosRankSum=-2.174e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:67:99:49:0,99,1485,99,1485,1485 ./.:19,23,0:42:99:.:536,0,436,593,503,1096:10,9,8,15 +20 10075464 . G . . END=10075471 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:45:99:43:0,99,1485 +20 10075472 . C . . END=10075476 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:45:93:43:0,93,1395 +20 10075477 . A . . END=10075478 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:44:84:42:0,84,1260 +20 10075479 . A G, . . DP=88;ExcessHet=3.01;RAW_MQandDP=140400,39 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:67:99:49:0,99,1485,99,1485,1485 ./.:0,39,0:39:99:.:1465,120,0,1465,120,1465:0,0,17,22 +20 10075480 . T . . END=10075484 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:45:81:44:0,81,1215 +20 10075485 . T . . END=10075488 GT:DP:GQ:MIN_DP:PL ./.:67:99:49:0,99,1485 ./.:43:72:39:0,72,1080 +20 10075489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:90:70:0,90,1350 ./.:43:72:39:0,72,1080 +20 10075490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:90:70:0,90,1350 ./.:40:66:40:0,66,990 +20 10075491 . G . . . GT:DP:GQ:MIN_DP:PL ./.:71:75:70:0,75,1125 ./.:39:57:39:0,57,855 +20 10075492 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:75:70:0,75,1125 ./.:40:54:38:0,54,810 +20 10075493 . G . . END=10075495 GT:DP:GQ:MIN_DP:PL ./.:72:63:71:0,63,945 ./.:40:54:38:0,54,810 +20 10075496 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:54:73:0,54,810 ./.:40:54:38:0,54,810 +20 10075497 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:54:73:0,54,810 ./.:39:51:39:0,51,765 +20 10075498 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:42:72:0,42,630 ./.:39:48:39:0,48,720 +20 10075499 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:33:73:0,33,495 ./.:39:48:39:0,48,720 +20 10075500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:27:73:0,27,405 ./.:37:42:37:0,42,630 +20 10075501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:21:71:0,21,315 ./.:37:42:37:0,42,630 +20 10075502 . T . . . GT:DP:GQ:MIN_DP:PL ./.:72:21:71:0,21,315 ./.:34:48:34:0,48,720 +20 10075503 . A . . END=10075506 GT:DP:GQ:MIN_DP:PL ./.:75:3:72:0,3,45 ./.:36:45:35:0,45,675 +20 10075507 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:6:80:0,6,90 ./.:36:39:36:0,39,585 +20 10075508 . GAA G,GA, . . BaseQRankSum=-1.270e-01;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=388921,105;ReadPosRankSum=2.47 GT:AD:DP:GQ:PL:SB ./.:0,0,70,0:70:99:1966,1966,1966,210,210,0,1966,1966,210,1966:0,0,29,41 ./.:12,11,0,0:23:99:357,0,371,393,405,798,393,405,798,798:5,7,5,6 +20 10075509 . A *, . . DP=105 GT:AD:DP:GQ:PL:SB ./.:0,70,0:70:99:1966,210,0,1966,210,1966:0,0,29,41 ./.:12,11,0:23:99:357,0,371,393,405,798:5,7,5,6 +20 10075510 . A *, . . DP=108 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:0:80:0,0,0,0,0,0 ./.:12,11,0:23:99:.:357,0,371,393,405,798:5,7,5,6 +20 10075511 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:0:34:0,0,66 +20 10075512 . A . . END=10075513 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:96:35:0,96,1440 +20 10075514 . A . . END=10075516 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10075517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:80:35:0,80,1019 +20 10075518 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10075519 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:87:35:0,87,998 +20 10075520 . C . . END=10075522 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:35:0,102,1530 +20 10075523 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:85:35:0,85,1030 +20 10075524 . A . . END=10075526 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10075527 . T . . END=10075530 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:90:33:0,90,1038 +20 10075531 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:87:34:0,87,1017 +20 10075532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:64:35:0,64,980 +20 10075533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:35:0,90,1062 +20 10075534 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:32:70:32:0,70,951 +20 10075535 . T . . END=10075536 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:34:0,90,1079 +20 10075537 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,99,1485 +20 10075538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:85:34:0,85,1007 +20 10075539 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:99:35:0,102,1530 +20 10075540 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:82:35:0,82,1089 +20 10075541 . A . . END=10075545 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:99:34:0,102,1107 +20 10075546 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:74:35:0,74,1110 +20 10075547 . G . . END=10075555 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:36:0,108,1132 +20 10075556 . T . . END=10075557 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:96:39:0,96,1440 +20 10075558 . T . . END=10075575 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:99:36:0,99,1097 +20 10075576 . A . . END=10075580 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:92:36:0,92,980 +20 10075581 . T . . END=10075582 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:38:0,99,1485 +20 10075583 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:95:41:0,95,1244 +20 10075584 . C . . END=10075587 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:99:38:0,111,1665 +20 10075588 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:86:39:0,86,1177 +20 10075589 . T . . END=10075593 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:99:36:0,99,1088 +20 10075594 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:96:36:0,96,995 +20 10075595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:36:0,105,1575 +20 10075596 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:97:36:0,97,1103 +20 10075597 . G . . END=10075603 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:99:34:0,102,1059 +20 10075604 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:85:37:0,85,1068 +20 10075605 . A . . END=10075624 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:99:35:0,105,1025 +20 10075625 . T . . END=10075628 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:43:90:42:0,90,1350 +20 10075629 . A . . END=10075632 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:81:39:0,81,1215 +20 10075633 . C . . END=10075636 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:72:40:0,72,1080 +20 10075637 . A . . END=10075646 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:41:60:39:0,60,900 +20 10075647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:57:40:0,57,855 +20 10075648 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:54:39:0,54,810 +20 10075649 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:51:40:0,51,765 +20 10075650 . A . . END=10075652 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:48:38:0,48,720 +20 10075653 . T . . END=10075654 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:42:38:0,42,630 +20 10075655 . G . . END=10075658 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:39:37:0,39,585 +20 10075659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:36:38:0,36,540 +20 10075660 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:27:39:0,27,405 +20 10075661 . T . . END=10075662 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:39:24:38:0,24,360 +20 10075663 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:21:37:0,21,315 +20 10075664 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:38:18:38:0,18,270 +20 10075665 . T . . END=10075666 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:9:37:0,9,135 +20 10075667 . A . . END=10075668 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:37:3:37:0,3,45 +20 10075669 . GA G, . . DP=87;ExcessHet=3.01;RAW_MQandDP=116500,32 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:0,29,0:29:87:.:817,87,0,817,87,817:0,0,15,14 +20 10075670 . A *, . . DP=87 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:0,29,0:29:87:.:817,87,0,817,87,817:0,0,15,14 +20 10075671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:34:0:34:0,0,0 +20 10075672 . A . . END=10075675 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:35:0,90,1041 +20 10075676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:88:36:0,88,1084 +20 10075677 . A . . END=10075678 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:93:36:0,93,1088 +20 10075679 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:68:36:0,68,1003 +20 10075680 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:36:84:36:0,84,1260 +20 10075681 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:58:35:0,58,941 +20 10075682 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:68:35:0,68,952 +20 10075683 . C . . END=10075689 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:80:32:0,80,940 +20 10075690 . A . . END=10075693 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:33:93:32:0,93,1395 +20 10075694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10075695 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:66:31:0,66,898 +20 10075696 . C . . END=10075700 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:31:0,81,1215 +20 10075701 . T . . END=10075703 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:71:31:0,71,933 +20 10075704 . C . . END=10075708 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:28:0,81,851 +20 10075709 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:28:71:28:0,71,842 +20 10075710 . A . . END=10075712 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10075713 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:28:55:28:0,55,814 +20 10075714 . T . . END=10075719 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:31:81:29:0,81,1215 +20 10075720 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:33:76:33:0,76,939 +20 10075721 . T . . END=10075726 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:35:90:34:0,90,1099 +20 10075727 . C . . END=10075766 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:99:35:0,99,1085 +20 10075767 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:98:40:0,98,1241 +20 10075768 . T . . END=10075781 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:99:37:0,111,1195 +20 10075782 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:40:91:40:0,91,1193 +20 10075783 . C . . END=10075926 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:52:99:39:0,101,1196 +20 10075927 . T C, . . BaseQRankSum=-1.298e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=180000,50;ReadPosRankSum=-1.755e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:55:0,120,1800,120,1800,1800 ./.:27,23,0:50:99:.:579,0,718,660,787,1448:16,11,12,11 +20 10075928 . A . . END=10076188 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:54:99:46:0,108,1340 +20 10076189 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:95:46:0,95,1312 +20 10076190 . G . . END=10076195 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:99:44:0,106,1307 +20 10076196 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:45:93:45:0,93,1301 +20 10076197 . A . . END=10076249 GT:DP:GQ:MIN_DP:PL ./.:76:99:55:0,120,1800 ./.:46:99:41:0,104,1086 +20 10076250 . A G, . . BaseQRankSum=-3.386e+00;ClippingRankSum=0.00;DP=124;ExcessHet=3.01;MQRankSum=-1.423e+00;RAW_MQandDP=440666,124;ReadPosRankSum=-6.050e-01 GT:AD:DP:GQ:PL:SB ./.:40,39,0:79:99:1136,0,1339,1257,1456,2712:14,26,20,19 ./.:0,43,0:43:99:1227,129,0,1227,129,1227:0,0,25,18 +20 10076251 . A . . END=10076275 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:47:99:42:0,111,1665 +20 10076276 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:94:41:0,94,1144 +20 10076277 . A . . END=10076287 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:99:39:0,104,1189 +20 10076288 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:91:41:0,91,1213 +20 10076289 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:84:41:0,84,1115 +20 10076290 . C . . END=10076292 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:43:99:41:0,106,1300 +20 10076293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:41:91:41:0,91,1126 +20 10076294 . C . . END=10076301 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:43:99:41:0,107,1181 +20 10076302 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:45:73:45:0,73,1206 +20 10076303 . A . . END=10076338 GT:DP:GQ:MIN_DP:PL ./.:70:99:62:0,120,1800 ./.:49:99:45:0,99,1185 +20 10076339 . A G, . . BaseQRankSum=-6.900e-02;ClippingRankSum=0.00;DP=127;ExcessHet=3.01;MQRankSum=-8.660e-01;RAW_MQandDP=454441,127;ReadPosRankSum=0.508 GT:AD:DP:GQ:PL:SB ./.:32,40,0:72:99:1338,0,1035,1435,1156,2590:12,20,18,22 ./.:0,55,0:55:99:1597,164,0,1597,164,1597:0,0,18,37 +20 10076340 . A . . END=10076398 GT:DP:GQ:MIN_DP:PL ./.:88:99:72:0,120,1800 ./.:57:99:47:0,110,1369 +20 10076399 . G A, . . BaseQRankSum=4.15;ClippingRankSum=0.00;DP=139;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=500400,139;ReadPosRankSum=-8.630e-01 GT:AD:DP:GQ:PL:SB ./.:44,50,0:94:99:1836,0,1544,1969,1694,3663:22,22,22,28 ./.:0,45,0:45:99:1353,133,0,1353,133,1353:0,0,16,29 +20 10076400 . G . . END=10076410 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:45:99:41:0,115,1400 +20 10076411 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:42:97:42:0,97,1198 +20 10076412 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:39:0,117,1174 +20 10076413 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:41:90:41:0,90,1153 +20 10076414 . G . . END=10076418 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:99:39:0,104,1121 +20 10076419 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:41:94:41:0,94,1224 +20 10076420 . G . . END=10076444 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:42:99:39:0,99,1220 +20 10076445 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:90:40:0,90,1216 +20 10076446 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:87:40:0,87,1106 +20 10076447 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:99:40:0,108,1620 +20 10076448 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:41:92:41:0,92,1226 +20 10076449 . A . . END=10076451 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:99:37:0,101,1053 +20 10076452 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:76:35:0,76,947 +20 10076453 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:88:38:0,88,1063 +20 10076454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:91:38:0,91,1093 +20 10076455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:99:36:0,105,1575 +20 10076456 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:96:38:0,96,1440 +20 10076457 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:80:38:0,80,1031 +20 10076458 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:96:37:0,96,1440 +20 10076459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:85:38:0,85,1031 +20 10076460 . A . . END=10076461 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:93:38:0,93,1395 +20 10076462 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:99:38:0,99,1485 +20 10076463 . A . . END=10076467 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:90:35:0,90,964 +20 10076468 . T . . END=10076469 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:68:33:0,68,882 +20 10076470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:33:79:33:0,79,972 +20 10076471 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:81:32:0,81,1215 +20 10076472 . C . . END=10076479 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:71:29:0,71,844 +20 10076480 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:29:69:29:0,69,1035 +20 10076481 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:56:27:0,56,819 +20 10076482 . T . . END=10076483 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:30:69:29:0,69,815 +20 10076484 . C . . END=10076488 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:70:26:0,70,821 +20 10076489 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:52:27:0,52,712 +20 10076490 . A . . END=10076492 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:29:75:28:0,75,848 +20 10076493 . G . . END=10076494 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:63:27:0,63,707 +20 10076495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:26:78:26:0,78,771 +20 10076496 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:48:27:0,48,732 +20 10076497 . A . . END=10076504 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:64:26:0,64,769 +20 10076505 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:28:72:28:0,72,1080 +20 10076506 . A . . END=10076507 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:26:69:25:0,69,1035 +20 10076508 . G . . END=10076509 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:25:72:25:0,72,1080 +20 10076510 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:25:64:25:0,64,678 +20 10076511 . A . . END=10076512 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:78:26:0,78,766 +20 10076513 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:27:81:27:0,81,775 +20 10076514 . T . . END=10076521 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:28:75:27:0,75,1125 +20 10076522 . T . . END=10076527 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:29:81:28:0,81,836 +20 10076528 . T . . END=10076536 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:90:30:0,90,897 +20 10076537 . A . . END=10076538 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:99:34:0,99,1485 +20 10076539 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:96:34:0,96,1440 +20 10076540 . A . . END=10076544 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:99:34:0,99,1034 +20 10076545 . A . . END=10076546 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:76:36:0,76,1000 +20 10076547 . A . . END=10076557 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:99:36:0,99,1089 +20 10076558 . T . . END=10076569 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:90:34:0,90,1350 +20 10076570 . G . . END=10076575 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:87:32:0,87,1305 +20 10076576 . A . . END=10076579 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:90:31:0,90,1350 +20 10076580 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:78:32:0,78,918 +20 10076581 . G . . END=10076599 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:33:90:31:0,90,949 +20 10076600 . G . . END=10076645 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:99:34:0,99,1081 +20 10076646 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:97:40:0,97,1184 +20 10076647 . T . . END=10076685 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:99:36:0,99,1151 +20 10076686 . A . . END=10076690 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:96:33:0,96,1440 +20 10076691 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:99:35:0,99,1485 +20 10076692 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:91:34:0,91,1022 +20 10076693 . T . . END=10076696 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:99:33:0,99,1052 +20 10076697 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:96:32:0,96,1046 +20 10076698 . A . . END=10076706 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:99:33:0,99,1056 +20 10076707 . A . . END=10076708 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:96:34:0,96,1440 +20 10076709 . T . . END=10076748 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:99:35:0,99,1142 +20 10076749 . G A, . . DP=90;ExcessHet=3.01;RAW_MQandDP=140400,39 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,102,1530,102,1530,1530 ./.:0,38,0:38:99:.:1267,114,0,1267,114,1267:0,0,24,14 +20 10076750 . C . . END=10076760 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:99:37:0,99,1172 +20 10076761 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:81:36:0,81,1066 +20 10076762 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:93:36:0,93,1087 +20 10076763 . G . . END=10076790 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:99:35:0,100,1069 +20 10076791 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:97:38:0,97,1136 +20 10076792 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:39:0,108,1620 +20 10076793 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:83:39:0,83,1122 +20 10076794 . A . . END=10076795 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:38:0,105,1575 +20 10076796 . A G, . . DP=88;ExcessHet=3.01;RAW_MQandDP=133200,37 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,102,1530,102,1530,1530 ./.:0,37,0:37:99:.:1164,111,0,1164,111,1164:0,0,21,16 +20 10076797 . A . . END=10076799 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:39:0,105,1575 +20 10076800 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:40:89:40:0,89,1207 +20 10076801 . G . . END=10076817 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:37:0,102,1238 +20 10076818 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:78:37:0,78,1108 +20 10076819 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:99:36:0,108,1158 +20 10076820 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:91:36:0,91,1108 +20 10076821 . C . . END=10076859 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:44:99:37:0,108,1171 +20 10076860 . A C, . . DP=94;ExcessHet=3.01;RAW_MQandDP=154800,43 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:51:0,102,1530,102,1530,1530 ./.:0,43,0:43:99:.:1227,129,0,1227,129,1227:0,0,19,24 +20 10076861 . G . . END=10076893 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:42:99:40:0,107,1241 +20 10076894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:42:97:42:0,97,1220 +20 10076895 . T . . END=10076899 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:41:99:40:0,106,1236 +20 10076900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:85:39:0,85,1189 +20 10076901 . G . . END=10076903 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:38:0,108,1620 +20 10076904 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:97:38:0,97,1141 +20 10076905 . T . . END=10076908 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:38:0,105,1575 +20 10076909 . G . . END=10076912 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:93:38:0,93,1395 +20 10076913 . T . . END=10076918 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:99:37:0,99,1485 +20 10076919 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:82:39:0,82,1180 +20 10076920 . A . . END=10076922 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:99:36:0,105,1575 +20 10076923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:93:36:0,93,1057 +20 10076924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:99:36:0,102,1530 +20 10076925 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:66:37:0,66,1018 +20 10076926 . A . . END=10076931 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:38:99:37:0,99,1485 +20 10076932 . C . . END=10076933 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:93:36:0,93,1070 +20 10076934 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:77:36:0,77,1037 +20 10076935 . A . . END=10076936 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:36:90:36:0,90,1350 +20 10076937 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:87:35:0,87,1305 +20 10076938 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:79:35:0,79,1050 +20 10076939 . A . . END=10076941 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:81:34:0,81,1215 +20 10076942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:68:34:0,68,997 +20 10076943 . C . . END=10076944 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:84:34:0,84,1260 +20 10076945 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:34:69:34:0,69,999 +20 10076946 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:78:32:0,78,1170 +20 10076947 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:69:32:0,69,1035 +20 10076948 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:31:31:31:0,31,815 +20 10076949 . C . . END=10076951 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:31:61:31:0,61,912 +20 10076952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:31:37:31:0,37,829 +20 10076953 . A . . END=10076959 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:29:66:28:0,66,793 +20 10076960 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:28:52:28:0,52,776 +20 10076961 . C . . END=10076974 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:30:60:29:0,60,900 +20 10076975 . A . . END=10076976 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:29:54:27:0,54,810 +20 10076977 . T . . END=10076978 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:29:51:28:0,51,765 +20 10076979 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:30:42:30:0,42,779 +20 10076980 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:48:32:0,48,720 +20 10076981 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:31:0:31:0,0,730 +20 10076982 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:30:41:30:0,41,751 +20 10076983 . T . . END=10076984 GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:32:0:29:0,0,619 +20 10076985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:37:48:37:0,48,720 +20 10076986 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:0:35:0,0,321 +20 10076987 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:39:54:39:0,54,810 +20 10076988 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:51:0,102,1530 ./.:35:0:35:0,0,377 +20 10076989 . CAA CAAAAAA,C,CA,CAAA, . . BaseQRankSum=-1.760e-01;ClippingRankSum=0.00;DP=103;ExcessHet=3.01;MQRankSum=-1.670e-01;RAW_MQandDP=350246,103;ReadPosRankSum=0.087 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:7,0,4,13,7,0:31:41:.:.:252,322,705,271,712,1146,41,423,448,376,147,318,276,0,361,322,705,712,423,318,705:4,3,12,12 ./.:1,19,0,0,0,0:20:62:0|1:10076989_C_CAAAA:964,62,0,967,69,975,967,69,975,975,967,69,975,975,975,967,69,975,975,975,975:1,0,12,7 +20 10076990 . A *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:7,13,0:31:41:.:252,41,376,322,423,705:4,3,12,12 ./.:.:37:0:37:0,0,382,0,382,382 +20 10076991 . A *, . . DP=112 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:7,13,0:31:41:.:252,41,376,322,423,705:4,3,12,12 ./.:.:37:75:36:0,75,1125,75,1125,1125 +20 10076992 . A . . END=10076995 GT:DP:GQ:MIN_DP:PL ./.:72:99:61:0,113,1800 ./.:37:75:36:0,75,1125 +20 10076996 . A . . END=10076998 GT:DP:GQ:MIN_DP:PL ./.:72:99:61:0,113,1800 ./.:36:81:36:0,81,1215 +20 10076999 . A . . END=10077000 GT:DP:GQ:MIN_DP:PL ./.:72:99:61:0,113,1800 ./.:36:75:36:0,75,1125 +20 10077001 . A . . END=10077007 GT:DP:GQ:MIN_DP:PL ./.:72:99:61:0,113,1800 ./.:38:81:38:0,81,1215 +20 10077008 . T A, . . BaseQRankSum=-1.748e+00;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=0.725;RAW_MQandDP=270964,80;ReadPosRankSum=-6.030e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:46,4,0:50:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,28,4,0 ./.:23,3,0:26:7:0|1:10076989_C_CAAAA:0,7,855,69,864,926:11,12,3,0 +20 10077009 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:54:0,120,1800 ./.:36:78:36:0,78,1170 +20 10077010 . G A, . . BaseQRankSum=-1.841e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=0.558;RAW_MQandDP=269364,79;ReadPosRankSum=-1.720e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:48,4,0:52:42:0|1:10077008_T_A:0,42,2066,148,2078,2184:18,30,4,0 ./.:21,2,0:23:7:0|1:10076989_C_CAAAA:0,7,855,69,864,925:10,11,2,0 +20 10077011 . A . . END=10077012 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:78:33:0,78,1170 +20 10077013 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:81:33:0,81,1215 +20 10077014 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:71:32:0,71,971 +20 10077015 . T A, . . BaseQRankSum=-1.628e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=0.442;RAW_MQandDP=86000,25;ReadPosRankSum=1.18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:24,1,0:25:18:.:0|1:10076989_C_CAAAA:0,18,932,72,938,993:13,11,1,0 +20 10077016 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:81:32:0,81,1215 +20 10077017 . G . . END=10077018 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:31:57:31:0,57,863 +20 10077019 . T . . END=10077025 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:81:29:0,81,952 +20 10077026 . A . . END=10077029 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:31:90:30:0,90,991 +20 10077030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:81:32:0,81,972 +20 10077031 . G . . END=10077035 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:96:32:0,96,992 +20 10077036 . A . . END=10077038 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:99:33:0,99,1055 +20 10077039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:88:33:0,88,1026 +20 10077040 . G . . END=10077042 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:33:96:32:0,96,1007 +20 10077043 . A . . END=10077059 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:99:34:0,99,1485 +20 10077060 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:35:93:35:0,93,1395 +20 10077061 . A . . END=10077071 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:35:82:33:0,82,1011 +20 10077072 . A . . END=10077074 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:90:30:0,90,958 +20 10077075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:30:87:30:0,87,1305 +20 10077076 . T . . END=10077079 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:32:90:31:0,90,987 +20 10077080 . A . . END=10077087 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:34:99:34:0,99,1050 +20 10077088 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:34:70:34:0,70,993 +20 10077089 . T . . END=10077099 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:99:34:0,99,1056 +20 10077100 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:38:96:38:0,96,1131 +20 10077101 . C . . END=10077105 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:99:36:0,105,1078 +20 10077106 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:83:37:0,83,1073 +20 10077107 . C . . END=10077112 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:99:34:0,99,1485 +20 10077113 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:94:36:0,94,1106 +20 10077114 . A . . END=10077174 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:38:99:35:0,99,1127 +20 10077175 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:36:97:36:0,97,1144 +20 10077176 . G . . END=10077197 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:39:99:37:0,102,1207 +20 10077198 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:97:41:0,97,1270 +20 10077199 . T . . END=10077244 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:36:0,103,1163 +20 10077245 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:91:37:0,91,1092 +20 10077246 . G . . END=10077258 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:36:0,108,1125 +20 10077259 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:93:41:0,93,1151 +20 10077260 . C . . END=10077266 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:99:41:0,111,1665 +20 10077267 . A T, . . DP=85;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:0,39,0:39:99:.:0|1:10077267_A_T:1716,117,0,1716,117,1716:0,0,22,17 +20 10077268 . G . . END=10077274 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:99:41:0,102,1530 +20 10077275 . A G, . . DP=84;ExcessHet=3.01;RAW_MQandDP=144000,40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:69:99:44:.:.:0,102,1654,102,1654,1654 ./.:0,38,0:38:99:.:0|1:10077267_A_T:1719,117,0,1719,117,1719:0,0,20,18 +20 10077276 . A . . END=10077279 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:40:99:38:0,102,1530 +20 10077280 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:37:94:37:0,94,1146 +20 10077281 . A . . END=10077296 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:39:99:36:0,104,1178 +20 10077297 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:44:84:44:0,84,1233 +20 10077298 . A . . END=10077306 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:99:40:0,111,1318 +20 10077307 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:41:93:41:0,93,1201 +20 10077308 . A . . END=10077614 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:48:99:39:0,99,1193 +20 10077615 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:42:61:42:0,61,1247 +20 10077616 . A . . END=10077620 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:43:92:42:0,92,1088 +20 10077621 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:45:84:45:0,84,1198 +20 10077622 . G . . END=10077751 GT:DP:GQ:MIN_DP:PL ./.:69:99:44:0,102,1654 ./.:53:99:44:0,99,1170 +20 10077752 . T C, . . BaseQRankSum=-6.503e+00;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=284400,79;ReadPosRankSum=-1.420e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:34,45,0:79:99:.:1374,0,1187,1477,1322,2799:16,18,16,29 ./.:.:53:99:44:0,99,1170,99,1170,1170 +20 10077753 . G . . END=10077767 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:53:99:44:0,99,1170 +20 10077768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:47:91:47:0,91,1379 +20 10077769 . G . . END=10077781 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:40:0,99,1211 +20 10077782 . T . . END=10077785 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:90:43:0,90,1350 +20 10077786 . C . . END=10077788 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:84:43:0,84,1260 +20 10077789 . A . . END=10077794 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:72:40:0,72,1080 +20 10077795 . G . . END=10077797 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:60:42:0,60,900 +20 10077798 . A . . END=10077799 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:57:41:0,57,855 +20 10077800 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:54:39:0,54,810 +20 10077801 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:45:40:0,45,675 +20 10077802 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:42:40:0,42,630 +20 10077803 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:39:39:0,39,585 +20 10077804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:33:40:0,33,495 +20 10077805 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:21:38:0,21,315 +20 10077806 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:18:37:0,18,270 +20 10077807 . T . . END=10077814 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:3:37:0,3,45 +20 10077815 . T . . END=10077819 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:0:38:0,0,0 +20 10077820 . TC T, . . DP=81;ExcessHet=3.01;RAW_MQandDP=126000,35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1276,105,0,1276,105,1276:0,0,18,17 +20 10077821 . C *, . . DP=81 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1276,105,0,1276,105,1276:0,0,18,17 +20 10077822 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:0:39:0,0,0 +20 10077823 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:78:39:0,78,1170 +20 10077824 . T . . END=10077826 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:81:38:0,81,1215 +20 10077827 . T . . END=10077828 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:78:37:0,78,1170 +20 10077829 . T . . END=10077838 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:84:29:0,84,1260 +20 10077839 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:76:29:0,76,834 +20 10077840 . G . . END=10077843 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:81:28:0,81,1215 +20 10077844 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:62:29:0,62,827 +20 10077845 . G . . END=10077848 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:84:30:0,84,1260 +20 10077849 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:32:0,90,1350 +20 10077850 . A . . END=10077851 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:30:78:30:0,78,840 +20 10077852 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:29:53:29:0,53,797 +20 10077853 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:32:0,90,1350 +20 10077854 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1305 +20 10077855 . G . . END=10077858 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:31:0,90,1350 +20 10077859 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:73:34:0,73,945 +20 10077860 . A . . END=10077862 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:32:0,90,1350 +20 10077863 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1017 +20 10077864 . G . . END=10077865 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:93:32:0,93,1395 +20 10077866 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:70:33:0,70,960 +20 10077867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:96:33:0,96,1440 +20 10077868 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:83:33:0,83,1030 +20 10077869 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:69:33:0,69,923 +20 10077870 . A . . END=10077871 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1485 +20 10077872 . G . . END=10077873 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:83:35:0,83,1006 +20 10077874 . A . . END=10077877 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1485 +20 10077878 . G . . END=10077879 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:91:34:0,91,1073 +20 10077880 . T . . END=10077989 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:99:35:0,102,1120 +20 10077990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:88:38:0,88,1155 +20 10077991 . C . . END=10077997 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1130 +20 10077998 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1026 +20 10077999 . C . . END=10078002 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,101,1183 +20 10078003 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:95:38:0,95,1164 +20 10078004 . T . . END=10078005 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:38:0,105,1575 +20 10078006 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:83:38:0,83,1168 +20 10078007 . T . . END=10078012 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:37:0,102,1530 +20 10078013 . A . . END=10078014 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1089 +20 10078015 . C . . END=10078017 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,99,1485 +20 10078018 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1078 +20 10078019 . C . . END=10078028 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1530 +20 10078029 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1149 +20 10078030 . G . . END=10078033 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,99,1485 +20 10078034 . A . . END=10078038 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:93:37:0,93,1395 +20 10078039 . T . . END=10078040 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:87:35:0,87,1305 +20 10078041 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:35:0,90,1350 +20 10078042 . G . . END=10078049 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:81:34:0,81,1215 +20 10078050 . T . . END=10078055 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:31:0,90,1350 +20 10078056 . T . . END=10078057 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:63:32:0,63,940 +20 10078058 . C . . END=10078064 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:90:31:0,90,1350 +20 10078065 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1485 +20 10078066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:91:34:0,91,963 +20 10078067 . C . . END=10078071 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:99:34:0,99,1059 +20 10078072 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:77:35:0,77,1010 +20 10078073 . T . . END=10078084 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:36:0,99,1073 +20 10078085 . G . . END=10078086 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:95:37:0,95,1098 +20 10078087 . T . . END=10078090 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,101,1082 +20 10078091 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:96:38:0,96,1091 +20 10078092 . C . . END=10078107 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:35:0,99,1076 +20 10078108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:96:38:0,96,1121 +20 10078109 . T . . END=10078115 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,102,1530 +20 10078116 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:96:37:0,96,1096 +20 10078117 . A . . END=10078119 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:99:37:0,102,1530 +20 10078120 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:97:39:0,97,1183 +20 10078121 . T . . END=10078128 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,100,1114 +20 10078129 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:97:36:0,97,1097 +20 10078130 . T . . END=10078137 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:36:0,99,1485 +20 10078138 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:94:37:0,94,1116 +20 10078139 . C . . END=10078145 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,104,1130 +20 10078146 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:84:39:0,84,1164 +20 10078147 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:40:0,111,1665 +20 10078148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:93:40:0,93,1202 +20 10078149 . T . . END=10078161 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:39:0,108,1218 +20 10078162 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:96:42:0,96,1251 +20 10078163 . T . . END=10078206 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:39:0,103,1236 +20 10078207 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:90:40:0,90,1177 +20 10078208 . G . . END=10078314 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:39:0,104,1208 +20 10078315 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:86:40:0,86,1128 +20 10078316 . C . . END=10078344 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:38:0,100,1217 +20 10078345 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:71:39:0,71,1101 +20 10078346 . G . . END=10078389 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:39:0,104,1168 +20 10078390 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:91:40:0,91,1266 +20 10078391 . G . . END=10078403 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:39:0,102,1226 +20 10078404 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:98:42:0,98,1294 +20 10078405 . T . . END=10078418 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:99:41:0,104,1300 +20 10078419 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:94:43:0,94,1280 +20 10078420 . C . . END=10078451 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,104,1198 +20 10078452 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:77:41:0,77,1201 +20 10078453 . T . . END=10078469 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:36:0,99,1113 +20 10078470 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:82:37:0,82,1111 +20 10078471 . T . . END=10078493 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:38:0,101,1134 +20 10078494 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:73:39:0,73,1094 +20 10078495 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:40:0,102,1530 +20 10078496 . A . . END=10078504 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:93:37:0,93,1182 +20 10078505 . G A, . . DP=83;ExcessHet=3.01;RAW_MQandDP=133200,37 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,35,0:35:99:.:1176,105,0,1176,105,1176:0,0,17,18 +20 10078506 . G . . END=10078512 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:33:0,93,1395 +20 10078513 . G . . END=10078514 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:77:33:0,77,1003 +20 10078515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:87:33:0,87,1013 +20 10078516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:93:32:0,93,1395 +20 10078517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:78:32:0,78,943 +20 10078518 . T . . END=10078519 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:93:32:0,93,1012 +20 10078520 . T . . END=10078527 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1142 +20 10078528 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:35:0,93,1395 +20 10078529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:89:35:0,89,1006 +20 10078530 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:75:35:0,75,964 +20 10078531 . A . . END=10078542 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:34:0,90,1049 +20 10078543 . T . . END=10078545 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:99:34:0,99,1485 +20 10078546 . C . . END=10078551 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:33:0,90,1350 +20 10078552 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:33:82:33:0,82,976 +20 10078553 . C . . END=10078554 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:90:33:0,90,1350 +20 10078555 . A . . END=10078556 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:34:87:33:0,87,1305 +20 10078557 . T . . END=10078562 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:90:32:0,90,960 +20 10078563 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:32:68:32:0,68,906 +20 10078564 . T . . END=10078565 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,102,1530 +20 10078566 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:92:36:0,92,1068 +20 10078567 . G . . END=10078570 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:36:0,103,1134 +20 10078571 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:98:38:0,98,1081 +20 10078572 . T . . END=10078601 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:99:38:0,104,1286 +20 10078602 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:98:48:0,98,1349 +20 10078603 . C . . END=10078615 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:99:42:0,108,1260 +20 10078616 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:96:42:0,96,1192 +20 10078617 . A . . END=10078855 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:47:99:41:0,99,1194 +20 10078856 . A . . END=10078857 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:90:43:0,90,1350 +20 10078858 . G . . END=10078859 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:81:43:0,81,1215 +20 10078860 . T . . END=10078863 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:72:44:0,72,1080 +20 10078864 . A . . END=10078869 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:69:44:0,69,1035 +20 10078870 . G . . END=10078871 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:57:42:0,57,855 +20 10078872 . C . . END=10078873 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:54:45:0,54,810 +20 10078874 . T . . END=10078879 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:48:45:0,48,720 +20 10078880 . C . . END=10078882 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:45:41:0,45,675 +20 10078883 . A . . END=10078885 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:42:40:0,42,630 +20 10078886 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:36:43:0,36,540 +20 10078887 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:33:43:0,33,495 +20 10078888 . G . . END=10078889 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:27:42:0,27,405 +20 10078890 . C . . END=10078891 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:18:42:0,18,270 +20 10078892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:15:42:0,15,225 +20 10078893 . A . . END=10078894 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:12:43:0,12,180 +20 10078895 . T . . END=10078896 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:6:45:0,6,90 +20 10078897 . T TA, . . DP=88;ExcessHet=3.01;RAW_MQandDP=151200,42 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,40,0:40:99:.:1219,129,0,1219,129,1219:0,0,19,21 +20 10078898 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:0:48:0,0,0 +20 10078899 . A . . END=10078907 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:48:99:46:0,111,1322 +20 10078908 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:46:88:46:0,88,1279 +20 10078909 . A . . END=10079064 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:51:99:43:0,101,1354 +20 10079065 . T C, . . DP=87;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,39,0:39:99:.:1122,116,0,1122,116,1122:0,0,18,21 +20 10079066 . G . . END=10079103 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,101,1171 +20 10079104 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:98:42:0,98,1160 +20 10079105 . A . . END=10079110 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:38:0,102,1150 +20 10079111 . G . . END=10079113 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:92:36:0,92,1028 +20 10079114 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:77:36:0,77,1044 +20 10079115 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:96:37:0,96,1440 +20 10079116 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:89:36:0,89,1040 +20 10079117 . T . . END=10079118 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:37:90:36:0,90,1350 +20 10079119 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:89:35:0,89,1037 +20 10079120 . T . . END=10079122 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:35:0,90,1350 +20 10079123 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:87:35:0,87,1009 +20 10079124 . T . . END=10079133 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:35:0,90,1350 +20 10079134 . A . . END=10079136 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:84:38:0,84,1260 +20 10079137 . A . . END=10079140 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:90:37:0,90,1350 +20 10079141 . A . . END=10079142 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:38:0,102,1530 +20 10079143 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:93:36:0,93,1119 +20 10079144 . A . . END=10079145 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:36:0,99,1485 +20 10079146 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:94:35:0,94,1083 +20 10079147 . T . . END=10079151 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:99:35:0,99,1485 +20 10079152 . T . . END=10079154 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:35:93:35:0,93,1395 +20 10079155 . T . . END=10079180 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:99:37:0,99,1159 +20 10079181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:94:41:0,94,1251 +20 10079182 . T . . END=10079187 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,117,1302 +20 10079188 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:96:43:0,96,1161 +20 10079189 . A . . END=10079216 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:42:0,106,1231 +20 10079217 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:98:45:0,98,1252 +20 10079218 . T . . END=10079237 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:99:42:0,113,1352 +20 10079238 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:45:89:45:0,89,1298 +20 10079239 . A . . END=10079246 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:99:44:0,113,1301 +20 10079247 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:43:97:43:0,97,1246 +20 10079248 . T . . END=10079253 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:42:99:41:0,111,1209 +20 10079254 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:44:98:44:0,98,1341 +20 10079255 . A . . END=10079395 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:49:99:42:0,101,1241 +20 10079396 . A G, . . DP=97;ExcessHet=3.01;RAW_MQandDP=183600,51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:46:0,108,1620,108,1620,1620 ./.:0,50,0:50:99:.:1433,150,0,1433,150,1433:0,0,26,24 +20 10079397 . C . . END=10079451 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:52:99:39:0,105,1172 +20 10079452 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:88:38:0,88,1105 +20 10079453 . A . . END=10079454 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:99:38:0,99,1485 +20 10079455 . A . . END=10079461 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:90:37:0,90,1350 +20 10079462 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:99:39:0,99,1485 +20 10079463 . T . . END=10079466 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:40:90:39:0,90,1350 +20 10079467 . A . . END=10079468 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:41:99:40:0,99,1485 +20 10079469 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:39:93:39:0,93,1395 +20 10079470 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:38:84:38:0,84,1124 +20 10079471 . G . . END=10079475 GT:DP:GQ:MIN_DP:PL ./.:70:99:46:0,108,1620 ./.:36:90:33:0,90,1350 +20 10079476 . T G, . . BaseQRankSum=-4.458e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.01;MQRankSum=-8.260e-01;RAW_MQandDP=153410,44;ReadPosRankSum=-4.313e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,11,0:44:39:.:39,0,1137,137,1166,1304:6,27,11,0 ./.:.:35:85:35:0,85,1012,85,1012,1012 +20 10079477 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:35:93:35:0,93,1395 +20 10079478 . A . . END=10079481 GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:37:99:36:0,99,1485 +20 10079482 . A . . . GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:36:97:36:0,97,1087 +20 10079483 . A . . END=10079488 GT:DP:GQ:MIN_DP:PL ./.:49:99:43:0,99,1485 ./.:36:99:35:0,102,1067 +20 10079489 . A . . . GT:DP:GQ:MIN_DP:PL ./.:47:84:47:0,84,1672 ./.:36:99:35:0,102,1067 +20 10079490 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,102,1067 +20 10079491 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:94:37:0,94,1102 +20 10079492 . G . . END=10079494 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,105,1575 +20 10079495 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:98:37:0,98,1127 +20 10079496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,99,1485 +20 10079497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1157 +20 10079498 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,99,1485 +20 10079499 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:63:36:0,63,1020 +20 10079500 . A . . END=10079503 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10079504 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1120 +20 10079505 . G . . END=10079508 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,102,1065 +20 10079509 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:98:39:0,98,1057 +20 10079510 . T . . END=10079519 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:39:0,100,1115 +20 10079520 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:98:43:0,98,1225 +20 10079521 . T . . END=10079566 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:41:0,110,1253 +20 10079567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:81:44:0,81,1289 +20 10079568 . C . . END=10079575 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:99:43:0,120,1800 +20 10079576 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:85:42:0,85,1240 +20 10079577 . G . . END=10079693 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:99:40:0,100,1193 +20 10079694 . T . . END=10079695 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:90:41:0,90,1275 +20 10079696 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:71:41:0,71,1166 +20 10079697 . A . . END=10079699 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:41:0,99,1485 +20 10079700 . A . . END=10079704 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:90:41:0,90,1350 +20 10079705 . A . . END=10079710 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:84:37:0,84,1260 +20 10079711 . T . . END=10079718 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:72:34:0,72,1080 +20 10079719 . T . . END=10079725 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:63:33:0,63,945 +20 10079726 . A . . END=10079729 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:54:35:0,54,810 +20 10079730 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:51:38:0,51,765 +20 10079731 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:42:38:0,42,630 +20 10079732 . T . . END=10079737 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:39:39:0,39,585 +20 10079738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:36:39:0,36,540 +20 10079739 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:33:38:0,33,495 +20 10079740 . T . . END=10079742 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:24:38:0,24,360 +20 10079743 . A . . END=10079744 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:18:38:0,18,270 +20 10079745 . A . . END=10079747 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:15:39:0,15,225 +20 10079748 . T . . END=10079751 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:12:38:0,12,180 +20 10079752 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:9:39:0,9,135 +20 10079753 . A . . END=10079758 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:3:39:0,3,45 +20 10079759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:6:43:0,6,90 +20 10079760 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:9:42:0,9,135 +20 10079761 . T TAA, . . DP=81;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:40:0,105,1571,105,1571,1571 ./.:0,41,0:41:99:.:1864,126,0,1864,126,1864:0,0,22,19 +20 10079762 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:0:43:0,0,0 +20 10079763 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:28:43:0,28,1126 +20 10079764 . G . . END=10079765 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:42:0,114,1710 +20 10079766 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:67:42:0,67,1172 +20 10079767 . A . . END=10079790 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:38:0,103,1194 +20 10079791 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:97:40:0,97,1176 +20 10079792 . T . . END=10079798 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:38:0,105,1575 +20 10079799 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:97:38:0,97,1091 +20 10079800 . T . . END=10079805 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:35:0,102,1530 +20 10079806 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:95:37:0,95,1135 +20 10079807 . A . . END=10079814 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,102,1530 +20 10079815 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:95:38:0,95,1032 +20 10079816 . T . . END=10079820 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,101,1220 +20 10079821 . C G, . . DP=76;ExcessHet=3.01;RAW_MQandDP=129600,36 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:73:99:40:0,105,1571,105,1571,1571 ./.:0,36,0:36:99:.:1159,108,0,1159,108,1159:0,0,19,17 +20 10079822 . A . . END=10079993 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:39:0,108,1281 +20 10079994 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:44:80:44:0,80,1196 +20 10079995 . A . . END=10080024 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:38:0,101,1133 +20 10080025 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:92:41:0,92,1155 +20 10080026 . A . . END=10080054 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:36:0,105,1069 +20 10080055 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:93:38:0,93,1125 +20 10080056 . G . . END=10080070 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:35:0,99,1083 +20 10080071 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:85:35:0,85,1033 +20 10080072 . G . . END=10080078 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10080079 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:81:32:0,81,877 +20 10080080 . A . . END=10080083 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10080084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:78:33:0,78,1001 +20 10080085 . A . . END=10080094 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:33:0,99,1009 +20 10080095 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:92:37:0,92,1117 +20 10080096 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:87:37:0,87,1122 +20 10080097 . C . . END=10080135 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:35:0,99,1101 +20 10080136 . T . . END=10080137 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:82:40:0,82,1106 +20 10080138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:41:0,120,1800 +20 10080139 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:76:42:0,76,1214 +20 10080140 . C . . END=10080168 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:40:0,101,1206 +20 10080169 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:89:41:0,89,1265 +20 10080170 . T . . END=10080175 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:99:41:0,112,1279 +20 10080176 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:92:40:0,92,1172 +20 10080177 . T . . END=10080180 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:40:0,119,1224 +20 10080181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:81:42:0,81,1259 +20 10080182 . C . . END=10080282 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:48:99:38:0,101,1253 +20 10080283 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:97:40:0,97,1193 +20 10080284 . T . . END=10080285 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:41:0,114,1710 +20 10080286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:98:41:0,98,1182 +20 10080287 . T . . END=10080291 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:41:0,111,1210 +20 10080292 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:97:42:0,97,1269 +20 10080293 . G . . END=10080549 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:53:99:38:0,105,1180 +20 10080550 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:60:25:60:0,25,1367 +20 10080551 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:62:50:62:0,50,1706 +20 10080552 . A . . END=10080561 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:64:99:61:0,120,1800 +20 10080562 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:59:83:59:0,83,1562 +20 10080563 . A . . END=10080566 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:60:99:53:0,120,1800 +20 10080567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:59:69:59:0,69,1401 +20 10080568 . A . . END=10080601 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:55:99:44:0,101,1258 +20 10080602 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:43:77:43:0,77,1116 +20 10080603 . T . . END=10080743 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:54:99:46:0,106,1259 +20 10080744 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:53:89:53:0,89,1446 +20 10080745 . A . . END=10080769 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:49:99:43:0,119,1435 +20 10080770 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:48:94:48:0,94,1393 +20 10080771 . A . . END=10080825 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:44:0,117,1447 +20 10080826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:90:50:0,90,1439 +20 10080827 . A . . END=10080857 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:51:99:46:0,109,1317 +20 10080858 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:97:47:0,97,1316 +20 10080859 . T . . END=10080862 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:45:99:45:0,105,1363 +20 10080863 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:45:94:45:0,94,1365 +20 10080864 . T . . END=10080882 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:49:99:46:0,120,1800 +20 10080883 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:47:94:47:0,94,1343 +20 10080884 . A . . END=10081241 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:50:99:41:0,102,1294 +20 10081242 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:89:41:0,89,1256 +20 10081243 . A . . END=10081245 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:38:0,102,1530 +20 10081246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:93:41:0,93,1230 +20 10081247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:39:0,108,1620 +20 10081248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:87:40:0,87,1183 +20 10081249 . A . . END=10081255 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,105,1575 +20 10081256 . G . . END=10081261 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:90:36:0,90,1350 +20 10081262 . G . . END=10081264 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:87:38:0,87,1305 +20 10081265 . G . . END=10081270 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:90:34:0,90,1350 +20 10081271 . T . . END=10081283 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:30:81:28:0,81,1215 +20 10081284 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:29:76:29:0,76,884 +20 10081285 . C . . END=10081292 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:30:81:28:0,81,1215 +20 10081293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:90:31:0,90,1350 +20 10081294 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:78:31:0,78,925 +20 10081295 . T . . END=10081296 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:32:0,93,1395 +20 10081297 . A . . END=10081299 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1076 +20 10081300 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:85:34:0,85,1005 +20 10081301 . A . . END=10081304 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:96:34:0,96,1440 +20 10081305 . G . . END=10081308 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081309 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:92:35:0,92,974 +20 10081310 . G . . END=10081313 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,102,1042 +20 10081314 . G . . END=10081316 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:93:35:0,93,1072 +20 10081317 . C . . END=10081318 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081319 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1119 +20 10081320 . G . . END=10081325 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,99,1096 +20 10081326 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:82:35:0,82,997 +20 10081327 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081328 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1090 +20 10081329 . A . . END=10081330 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:35:0,99,1485 +20 10081331 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1095 +20 10081332 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,99,1485 +20 10081333 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:94:36:0,94,1093 +20 10081334 . G . . END=10081347 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:34:0,99,1485 +20 10081348 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1090 +20 10081349 . C . . END=10081350 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1530 +20 10081351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:94:35:0,94,1055 +20 10081352 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,99,1485 +20 10081353 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:74:34:0,74,1016 +20 10081354 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1485 +20 10081355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:94:35:0,94,1059 +20 10081356 . C . . END=10081358 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:33:0,99,1009 +20 10081359 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:86:34:0,86,997 +20 10081360 . A . . END=10081361 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:99:34:0,99,1485 +20 10081362 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:84:32:0,84,941 +20 10081363 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:31:76:31:0,76,910 +20 10081364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:93:33:0,93,1395 +20 10081365 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:86:34:0,86,1086 +20 10081366 . G . . END=10081369 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,99,1485 +20 10081370 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:77:37:0,77,1114 +20 10081371 . G . . END=10081374 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:36:0,105,1575 +20 10081375 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1094 +20 10081376 . C . . END=10081378 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:34:0,102,1070 +20 10081379 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:36:0,96,1113 +20 10081380 . G . . END=10081381 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,105,1575 +20 10081382 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:87:38:0,87,1157 +20 10081383 . A . . END=10081384 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:38:0,102,1530 +20 10081385 . A . . END=10081391 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:96:34:0,96,1440 +20 10081392 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:87:35:0,87,1037 +20 10081393 . T . . END=10081394 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,102,1530 +20 10081395 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1395 +20 10081396 . A . . END=10081405 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:37:0,99,1485 +20 10081406 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:94:40:0,94,1209 +20 10081407 . A . . END=10081414 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:39:0,108,1620 +20 10081415 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:95:39:0,95,1186 +20 10081416 . C . . END=10081422 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:39:0,104,1189 +20 10081423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:97:39:0,97,1216 +20 10081424 . A . . END=10081437 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:99:39:0,106,1212 +20 10081438 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:97:38:0,97,1164 +20 10081439 . C . . END=10081448 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:37:0,105,1575 +20 10081449 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:97:37:0,97,1153 +20 10081450 . A . . END=10081576 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:42:99:37:0,102,1154 +20 10081577 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:87:40:0,87,1122 +20 10081578 . C . . END=10081589 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:99:37:0,100,1067 +20 10081590 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:85:39:0,85,1111 +20 10081591 . A . . END=10081618 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:41:99:37:0,99,1163 +20 10081619 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:96:37:0,96,1119 +20 10081620 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:81:36:0,81,1071 +20 10081621 . A . . END=10081623 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1530 +20 10081624 . G . . END=10081625 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:93:37:0,93,1067 +20 10081626 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:37:0,100,1101 +20 10081627 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:90:36:0,90,1028 +20 10081628 . T . . END=10081629 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:36:0,102,1530 +20 10081630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:97:36:0,97,1141 +20 10081631 . T . . END=10081640 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081641 . A . . END=10081643 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:93:35:0,93,1395 +20 10081644 . A . . END=10081650 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:87:34:0,87,1305 +20 10081651 . A . . END=10081654 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:90:32:0,90,1350 +20 10081655 . A . . END=10081659 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:32:81:30:0,81,923 +20 10081660 . C . . END=10081661 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:99:35:0,99,1485 +20 10081662 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:36:90:36:0,90,1071 +20 10081663 . G . . END=10081666 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,99,1485 +20 10081667 . T . . END=10081677 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:34:90:32:0,90,1350 +20 10081678 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:68:33:0,68,967 +20 10081679 . A . . END=10081680 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:90:33:0,90,1350 +20 10081681 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:87:33:0,87,1305 +20 10081682 . A . . END=10081692 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:91:32:0,91,1061 +20 10081693 . T . . END=10081695 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:34:0,99,1485 +20 10081696 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:96:35:0,96,1440 +20 10081697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:88:35:0,88,953 +20 10081698 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:33:96:33:0,96,1440 +20 10081699 . A . . END=10081710 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:99:34:0,99,1485 +20 10081711 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:35:89:35:0,89,972 +20 10081712 . A . . END=10081732 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:37:99:36:0,102,1145 +20 10081733 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:38:90:38:0,90,1136 +20 10081734 . T . . END=10081743 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:38:0,102,1530 +20 10081744 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:40:92:40:0,92,1169 +20 10081745 . A . . END=10081749 GT:DP:GQ:MIN_DP:PL ./.:73:99:40:0,105,1571 ./.:39:99:37:0,105,1116 +20 10081750 . C A, . . BaseQRankSum=2.67;ClippingRankSum=0.00;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=298800,83;ReadPosRankSum=-6.260e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:44,39,0:83:99:.:1382,0,1525,1514,1643,3157:23,21,19,20 ./.:.:38:95:38:0,95,1088,95,1088,1088 +20 10081751 . T . . END=10081774 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:40:99:34:0,99,1072 +20 10081775 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:36:79:36:0,79,1048 +20 10081776 . A . . END=10081787 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:38:99:36:0,105,1193 +20 10081788 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:40:88:40:0,88,1156 +20 10081789 . T . . END=10081799 GT:DP:GQ:MIN_DP:PL ./.:77:99:68:0,120,1800 ./.:41:99:37:0,99,1143 +20 10081800 . C T, . . BaseQRankSum=0.241;ClippingRankSum=0.00;DP=105;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=244800,68;ReadPosRankSum=-1.082e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,33,0:68:99:.:1138,0,1222,1244,1322,2565:26,9,17,16 ./.:.:41:99:37:0,99,1143,99,1143,1143 +20 10081801 . A . . END=10081852 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:99:37:0,99,1143 +20 10081853 . T . . END=10081854 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:94:38:0,94,1123 +20 10081855 . T . . END=10081967 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:40:0,111,1224 +20 10081968 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:97:46:0,97,1329 +20 10081969 . A . . END=10082042 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:45:99:39:0,102,1297 +20 10082043 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:81:38:0,81,1079 +20 10082044 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:96:38:0,96,1440 +20 10082045 . T . . END=10082047 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:39:0,99,1485 +20 10082048 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:98:39:0,98,1163 +20 10082049 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,99,1485 +20 10082050 . C . . END=10082056 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:92:34:0,92,1097 +20 10082057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:72:34:0,72,949 +20 10082058 . A . . END=10082061 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:90:33:0,90,1350 +20 10082062 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:87:33:0,87,1305 +20 10082063 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:56:33:0,56,904 +20 10082064 . A . . END=10082067 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:84:33:0,84,1260 +20 10082068 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:90:35:0,90,1350 +20 10082069 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:87:34:0,87,1305 +20 10082070 . G . . END=10082073 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:90:32:0,90,1350 +20 10082074 . G . . END=10082075 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:84:32:0,84,1260 +20 10082076 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:78:32:0,78,914 +20 10082077 . G . . END=10082078 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:31:87:31:0,87,1305 +20 10082079 . C . . END=10082080 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:90:32:0,90,1350 +20 10082081 . A . . END=10082082 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:80:32:0,80,945 +20 10082083 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:90:32:0,90,1350 +20 10082084 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:32:81:32:0,81,972 +20 10082085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:75:30:0,75,890 +20 10082086 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:90:30:0,90,927 +20 10082087 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:30:75:30:0,75,898 +20 10082088 . A . . END=10082090 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:31:93:31:0,93,972 +20 10082091 . T . . END=10082092 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:99:33:0,99,1024 +20 10082093 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:86:33:0,86,993 +20 10082094 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:33:99:33:0,99,1032 +20 10082095 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:91:35:0,91,988 +20 10082096 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:88:35:0,88,978 +20 10082097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:99:35:0,102,1530 +20 10082098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:94:35:0,94,1056 +20 10082099 . A . . END=10082105 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:34:99:34:0,99,1052 +20 10082106 . C . . END=10082107 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:35:96:33:0,96,1440 +20 10082108 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:69:36:0,69,1022 +20 10082109 . G . . END=10082110 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:93:36:0,93,1395 +20 10082111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,102,1530 +20 10082112 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:96:41:0,96,1106 +20 10082113 . T . . END=10082119 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:40:99:36:0,103,1068 +20 10082120 . A . . END=10082121 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:94:38:0,94,1067 +20 10082122 . G . . END=10082126 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:37:0,103,1098 +20 10082127 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:81:39:0,81,1069 +20 10082128 . T . . END=10082131 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:37:0,105,1575 +20 10082132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:97:38:0,97,1138 +20 10082133 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,105,1575 +20 10082134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:84:37:0,84,1033 +20 10082135 . A . . END=10082137 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:99:38:0,108,1620 +20 10082138 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:36:67:36:0,67,1014 +20 10082139 . T . . END=10082140 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:99:37:0,108,1620 +20 10082141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:98:37:0,98,1093 +20 10082142 . G . . END=10082148 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:38:0,108,1620 +20 10082149 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:84:38:0,84,1110 +20 10082150 . C . . END=10082156 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:37:99:37:0,102,1530 +20 10082157 . A . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:85:41:0,85,1197 +20 10082158 . G . . END=10082162 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:41:99:41:0,108,1620 +20 10082163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:43:98:43:0,98,1276 +20 10082164 . A . . END=10082318 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:49:99:38:0,99,1147 +20 10082319 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:47:96:47:0,96,1319 +20 10082320 . C . . END=10082372 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:42:0,101,1299 +20 10082373 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:96:46:0,96,1260 +20 10082374 . A . . END=10082447 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:39:0,108,1180 +20 10082448 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:94:42:0,94,1180 +20 10082449 . A . . END=10082475 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:44:99:39:0,112,1170 +20 10082476 . A G, . . BaseQRankSum=1.25;ClippingRankSum=0.00;DP=83;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-5.430e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:76:99:43:0,111,1665,111,1665,1665 ./.:19,21,0:40:99:.:552,0,487,609,549,1158:10,9,13,8 +20 10082477 . C . . END=10082540 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:45:99:41:0,104,1252 +20 10082541 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:47:92:47:0,92,1352 +20 10082542 . T . . END=10082636 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:52:99:45:0,104,1432 +20 10082637 . C . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:48:96:48:0,96,1317 +20 10082638 . T . . END=10082803 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:46:99:40:0,99,1211 +20 10082804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:43:96:43:0,96,1286 +20 10082805 . T . . END=10082807 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:42:0,120,1800 +20 10082808 . G . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:93:42:0,93,1217 +20 10082809 . A . . END=10082877 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:42:99:37:0,99,1146 +20 10082878 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:38:93:38:0,93,1395 +20 10082879 . A . . END=10082884 GT:DP:GQ:MIN_DP:PL ./.:76:99:43:0,111,1665 ./.:39:99:38:0,99,1192 +20 10082885 . A C, . . BaseQRankSum=-2.266e+00;ClippingRankSum=0.00;DP=81;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=154800,43;ReadPosRankSum=-2.350e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:41,2,0:43:93:.:0|1:10082885_A_C:0,93,1525,123,1531,1561:18,23,0,2 ./.:.:38:77:38:.:.:0,77,1130,77,1130,1130 +20 10082886 . C . . END=10082891 GT:DP:GQ:MIN_DP:PL ./.:43:99:42:0,99,1485 ./.:36:99:35:0,102,1530 +20 10082892 . C T, . . DP=75;ExcessHet=3.01;RAW_MQandDP=267241,75 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:0,44,0:44:99:0|1:10082885_A_C:1741,132,0,1741,132,1741:0,0,20,24 ./.:0,31,0:31:93:.:.:967,93,0,967,93,967:0,0,17,14 +20 10082893 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:35:99:35:0,105,1072 +20 10082894 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:97:36:0,97,1085 +20 10082895 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:35:99:35:0,105,1087 +20 10082896 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:97:36:0,97,1100 +20 10082897 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:99:36:0,108,1155 +20 10082898 . G . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:73:36:0,73,1054 +20 10082899 . C . . . GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:36:93:36:0,93,1086 +20 10082900 . C . . END=10082901 GT:DP:GQ:MIN_DP:PL ./.:41:99:38:0,99,1485 ./.:38:99:36:0,105,1102 +20 10082902 . C . . END=10082903 GT:DP:GQ:MIN_DP:PL ./.:38:96:38:0,96,1440 ./.:38:99:36:0,105,1102 +20 10082904 . C . . END=10082905 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,102,1530 ./.:38:99:36:0,105,1102 +20 10082906 . T . . END=10082909 GT:DP:GQ:MIN_DP:PL ./.:38:90:37:0,90,1350 ./.:38:99:36:0,105,1102 +20 10082910 . A . . . GT:DP:GQ:MIN_DP:PL ./.:35:83:35:0,83,1220 ./.:38:99:36:0,105,1102 +20 10082911 . C . . END=10082913 GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:38:99:36:0,105,1102 +20 10082914 . C . . . GT:DP:GQ:MIN_DP:PL ./.:35:90:35:0,90,1350 ./.:40:86:40:0,86,1121 +20 10082915 . C . . END=10082918 GT:DP:GQ:MIN_DP:PL ./.:37:99:35:0,99,1485 ./.:38:99:36:0,99,1017 +20 10082919 . A . . END=10082924 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:38:99:36:0,99,1017 +20 10082925 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:38:0,99,1485 ./.:38:99:36:0,99,1017 +20 10082926 . C . . END=10082930 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:38:99:36:0,99,1017 +20 10082931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:75:38:0,75,1443 ./.:38:99:36:0,99,1017 +20 10082932 . C . . END=10082938 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,99,1017 +20 10082939 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:94:37:0,94,1136 +20 10082940 . C . . END=10082942 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:35:0,99,1485 +20 10082943 . G . . END=10082953 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:32:0,90,980 +20 10082954 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,983 +20 10082955 . C . . END=10082958 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:93:32:0,93,1395 +20 10082959 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:84:34:0,84,1018 +20 10082960 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10082961 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:96:35:0,96,1440 +20 10082962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:37:0,102,1530 +20 10082963 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:92:37:0,92,1084 +20 10082964 . C . . END=10082967 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,102,1530 +20 10082968 . T . . END=10082971 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:95:37:0,95,1115 +20 10082972 . T . . END=10082973 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082974 . C . . END=10082975 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:38:0,96,1124 +20 10082976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082977 . A . . END=10082983 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:93:33:0,93,1084 +20 10082984 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:85:37:0,85,1052 +20 10082985 . C . . END=10082986 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,99,1485 +20 10082987 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:87:38:0,87,1133 +20 10082988 . A . . END=10082990 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:96:36:0,96,1440 +20 10082991 . G . . END=10082998 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:36:0,99,1130 +20 10082999 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:81:33:0,81,984 +20 10083000 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:91:36:0,91,1067 +20 10083001 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10083002 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:77:36:0,77,1024 +20 10083003 . A . . END=10083006 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:90:34:0,90,1350 +20 10083007 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:87:34:0,87,1032 +20 10083008 . C . . END=10083014 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:93:33:0,93,1061 +20 10083015 . A . . END=10083016 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:78:32:0,78,933 +20 10083017 . G . . END=10083018 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:95:32:0,95,893 +20 10083019 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:85:32:0,85,960 +20 10083020 . T . . END=10083022 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:92:31:0,92,936 +20 10083023 . C . . END=10083028 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,102,1041 +20 10083029 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:94:35:0,94,1065 +20 10083030 . A . . END=10083046 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:33:0,99,1026 +20 10083047 . T . . END=10083058 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:90:32:0,90,1350 +20 10083059 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:82:31:0,82,972 +20 10083060 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10083061 . C . . END=10083062 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:76:32:0,76,918 +20 10083063 . T . . END=10083065 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:31:0,90,1350 +20 10083066 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:87:29:0,87,895 +20 10083067 . C . . END=10083068 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:31:0,90,1350 +20 10083069 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:77:31:0,77,894 +20 10083070 . T . . END=10083072 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:92:31:0,92,926 +20 10083073 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:87:29:0,87,847 +20 10083074 . T . . END=10083076 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:96:32:0,96,977 +20 10083077 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:74:30:0,74,862 +20 10083078 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:96:32:0,96,1025 +20 10083079 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:63:34:0,63,991 +20 10083080 . T . . END=10083081 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,102,1085 +20 10083082 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:87:34:0,87,999 +20 10083083 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,105,1575 +20 10083084 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:89:35:0,89,1057 +20 10083085 . T . . END=10083096 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:36:0,99,1088 +20 10083097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:93:42:0,93,1273 +20 10083098 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:78:42:0,78,1162 +20 10083099 . A . . END=10083139 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,99,1340 +20 10083140 . T . . END=10083142 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:37:0,96,1440 +20 10083143 . T . . END=10083149 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:34:0,99,1485 +20 10083150 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:85:34:0,85,978 +20 10083151 . T . . END=10083167 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:33:0,99,1040 +20 10083168 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:92:40:0,92,1180 +20 10083169 . T . . END=10083175 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:37:0,102,1220 +20 10083176 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:90:38:0,90,1132 +20 10083177 . C . . END=10083190 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,108,1141 +20 10083191 . A T, . . BaseQRankSum=-1.131e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-6.800e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:18,20,0:38:99:.:512,0,452,566,512,1078:11,7,10,10 +20 10083192 . C . . END=10083211 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:99:41:0,109,1223 +20 10083212 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:83:43:0,83,1119 +20 10083213 . C . . END=10083230 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:99:42:0,108,1262 +20 10083231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:74:44:0,74,1206 +20 10083232 . T . . END=10083238 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,108,1620 +20 10083239 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:89:40:0,89,1148 +20 10083240 . C . . END=10083277 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,102,1101 +20 10083278 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:94:37:0,94,1074 +20 10083279 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,102,1530 +20 10083280 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:53:35:0,53,919 +20 10083281 . T . . END=10083282 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,99,1090 +20 10083283 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:92:37:0,92,1118 +20 10083284 . A . . END=10083291 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,102,1150 +20 10083292 . G . . END=10083293 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:94:38:0,94,1086 +20 10083294 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:78:37:0,78,1043 +20 10083295 . A . . END=10083309 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:37:0,99,1485 +20 10083310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:93:37:0,93,1097 +20 10083311 . T . . END=10083312 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,99,1120 +20 10083313 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:71:37:0,71,1016 +20 10083314 . C . . END=10083341 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:36:0,105,1075 +20 10083342 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:93:40:0,93,1205 +20 10083343 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:40:0,104,1211 +20 10083344 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:83:39:0,83,1140 +20 10083345 . C . . END=10083349 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:39:0,102,1530 +20 10083350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:89:40:0,89,1193 +20 10083351 . A . . END=10083384 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:37:0,105,1155 +20 10083385 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:82:38:0,82,1160 +20 10083386 . A . . END=10083387 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:38:0,108,1620 +20 10083388 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:84:39:0,84,1155 +20 10083389 . T . . END=10083395 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,102,1530 +20 10083396 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:67:41:0,67,1215 +20 10083397 . G . . END=10083454 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:47:99:42:0,106,1414 +20 10083455 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:47:94:47:0,94,1236 +20 10083456 . T . . END=10083566 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:48:99:40:0,105,1312 +20 10083567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:92:45:0,92,1279 +20 10083568 . T . . END=10083655 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:40:0,103,1143 +20 10083656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:92:41:0,92,1192 +20 10083657 . A . . END=10083663 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,112,1072 +20 10083664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:97:40:0,97,1165 +20 10083665 . A . . END=10083675 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,108,1197 +20 10083676 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:90:41:0,90,1207 +20 10083677 . G . . END=10083700 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:38:0,99,1135 +20 10083701 . A . . END=10083705 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:90:40:0,90,1150 +20 10083706 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:40:0,102,1530 +20 10083707 . A . . END=10083711 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:91:36:0,91,1073 +20 10083712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:89:35:0,89,991 +20 10083713 . T . . END=10083714 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:96:35:0,96,1440 +20 10083715 . C . . END=10083724 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:33:0,99,1013 +20 10083725 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:85:34:0,85,1014 +20 10083726 . G . . END=10083737 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:91:33:0,91,1009 +20 10083738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:85:32:0,85,989 +20 10083739 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:93:32:0,93,1395 +20 10083740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:87:33:0,87,949 +20 10083741 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:93:31:0,93,984 +20 10083742 . A . . END=10083753 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:70:29:0,70,849 +20 10083754 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:32:0,90,1350 +20 10083755 . G . . END=10083756 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:87:30:0,87,1305 +20 10083757 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:79:30:0,79,920 +20 10083758 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:81:30:0,81,1215 +20 10083759 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:79:30:0,79,913 +20 10083760 . C . . END=10083771 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:81:29:0,81,974 +20 10083772 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:76:29:0,76,862 +20 10083773 . C . . END=10083775 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:84:30:0,84,1260 +20 10083776 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:78:30:0,78,896 +20 10083777 . A . . END=10083783 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:84:29:0,84,1260 +20 10083784 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:71:29:0,71,813 +20 10083785 . T . . END=10083787 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:28:81:27:0,81,838 +20 10083788 . A . . END=10083789 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:93:32:0,93,1395 +20 10083790 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:55:33:0,55,948 +20 10083791 . A . . END=10083797 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10083798 . A . . END=10083801 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:84:31:0,84,1260 +20 10083802 . C . . END=10083807 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1025 +20 10083808 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,944 +20 10083809 . T . . END=10083812 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:90:31:0,90,1350 +20 10083813 . A . . END=10083823 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1056 +20 10083824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:96:36:0,96,1075 +20 10083825 . G . . END=10083849 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,102,1128 +20 10083850 . A . . END=10083851 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:96:37:0,96,1440 +20 10083852 . C . . END=10084120 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:51:99:36:0,99,1185 +20 10084121 . C T, . . BaseQRankSum=-1.401e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=169200,47;ReadPosRankSum=-4.290e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:1,46,0:47:99:.:1486,107,0,1489,138,1521:0,1,17,29 +20 10084122 . T . . END=10084188 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:50:99:40:0,108,1299 +20 10084189 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:96:40:0,96,1186 +20 10084190 . A . . END=10084209 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:34:0,99,1069 +20 10084210 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:89:38:0,89,1174 +20 10084211 . T . . END=10084238 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:99:36:0,102,1178 +20 10084239 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:77:37:0,77,1046 +20 10084240 . T . . END=10084255 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,100,1099 +20 10084256 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:87:40:0,87,1258 +20 10084257 . T . . END=10084268 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,111,1332 +20 10084269 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:97:43:0,97,1303 +20 10084270 . T . . END=10084457 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:49:99:41:0,102,1277 +20 10084458 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:53:97:53:0,97,1503 +20 10084459 . T . . END=10084574 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:50:99:38:0,99,1175 +20 10084575 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:88:40:0,88,1201 +20 10084576 . T . . END=10084599 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:40:99:38:0,103,1215 +20 10084600 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:93:42:0,93,1312 +20 10084601 . G . . END=10084625 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:38:0,99,1153 +20 10084626 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:98:37:0,98,1124 +20 10084627 . A . . END=10084631 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:34:0,102,1044 +20 10084632 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:91:35:0,91,1023 +20 10084633 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:35:99:35:0,105,1091 +20 10084634 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:96:37:0,96,1096 +20 10084635 . A . . END=10084637 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:99:36:0,107,1043 +20 10084638 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:37:89:37:0,89,1055 +20 10084639 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:90:39:0,90,1213 +20 10084640 . G . . END=10084651 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:41:99:39:0,109,1178 +20 10084652 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:86:39:0,86,1078 +20 10084653 . T . . END=10084672 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:42:99:39:0,104,1153 +20 10084673 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:97:38:0,97,1042 +20 10084674 . T . . END=10084760 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:37:0,105,1159 +20 10084761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:94:39:0,94,1170 +20 10084762 . G . . END=10084780 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:37:0,103,1193 +20 10084781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:91:38:0,91,1172 +20 10084782 . C . . END=10084818 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:38:99:36:0,99,1169 +20 10084819 . C . . END=10084827 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:90:34:0,90,1350 +20 10084828 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:36:0,99,1485 +20 10084829 . C . . END=10084833 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1350 +20 10084834 . C . . END=10084838 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:80:33:0,80,1011 +20 10084839 . T . . END=10084840 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:78:32:0,78,1170 +20 10084841 . T . . END=10084848 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:81:29:0,81,1215 +20 10084849 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:29:53:29:0,53,878 +20 10084850 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:30:87:30:0,87,1305 +20 10084851 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:31:0,90,1350 +20 10084852 . T . . END=10084853 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:81:31:0,81,984 +20 10084854 . T . . END=10084863 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:31:0,90,1350 +20 10084864 . A . . END=10084871 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:32:81:31:0,81,980 +20 10084872 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:78:33:0,78,1009 +20 10084873 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:87:33:0,87,1305 +20 10084874 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:90:33:0,90,1350 +20 10084875 . A . . END=10084883 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:82:30:0,82,1011 +20 10084884 . T . . END=10084896 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:31:90:30:0,90,874 +20 10084897 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:33:88:33:0,88,1003 +20 10084898 . C . . END=10084902 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:93:34:0,93,1395 +20 10084903 . C . . END=10084905 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1485 +20 10084906 . C . . END=10084915 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:34:90:33:0,90,1350 +20 10084916 . G . . END=10084921 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:36:99:35:0,99,1485 +20 10084922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:95:39:0,95,1146 +20 10084923 . G . . END=10085053 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:45:99:40:0,99,1192 +20 10085054 . A G, . . DP=79;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:38:0,102,1530,102,1530,1530 ./.:0,41,0:41:99:.:1236,123,0,1236,123,1236:0,0,22,19 +20 10085055 . A . . END=10085162 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:44:99:40:0,105,1230 +20 10085163 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:97:43:0,97,1221 +20 10085164 . A . . END=10085205 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:43:99:38:0,99,1207 +20 10085206 . C . . END=10085210 GT:DP:GQ:MIN_DP:PL ./.:77:99:38:0,102,1530 ./.:39:90:38:0,90,1350 +20 10085211 . A T, . . BaseQRankSum=-1.501e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.01;MQRankSum=-1.028e+00;RAW_MQandDP=272210,77;ReadPosRankSum=-2.800e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,36,0:76:99:.:1239,0,1443,1360,1551,2911:21,19,17,19 ./.:.:39:90:38:0,90,1350,90,1350,1350 +20 10085212 . G . . END=10085215 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:90:38:0,90,1350 +20 10085216 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:85:36:0,85,1149 +20 10085217 . T . . END=10085221 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:96:34:0,96,1440 +20 10085222 . G . . END=10085228 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:99:34:0,99,1485 +20 10085229 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:96:34:0,96,1440 +20 10085230 . T . . END=10085246 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:33:0,99,1041 +20 10085247 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:91:38:0,91,1164 +20 10085248 . T . . END=10085319 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:99:38:0,104,1188 +20 10085320 . C T, . . DP=95;ExcessHet=3.01;RAW_MQandDP=147600,41 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:77:99:54:0,120,1800,120,1800,1800 ./.:0,40,0:40:99:.:1269,120,0,1269,120,1269:0,0,22,18 +20 10085321 . A . . END=10085401 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:37:0,99,1185 +20 10085402 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:82:38:0,82,1103 +20 10085403 . G . . END=10085422 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:99:37:0,99,1158 +20 10085423 . T . . END=10085428 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:96:35:0,96,1440 +20 10085429 . A . . END=10085431 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10085432 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:93:36:0,93,1395 +20 10085433 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:85:35:0,85,1073 +20 10085434 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:96:35:0,96,1440 +20 10085435 . T . . END=10085494 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:37:0,102,1184 +20 10085495 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:97:43:0,97,1266 +20 10085496 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:43:99:43:0,100,1366 +20 10085497 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:97:42:0,97,1288 +20 10085498 . G . . END=10085499 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:84:41:0,84,1223 +20 10085500 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:97:42:0,97,1287 +20 10085501 . C . . END=10085502 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:39:0,116,1143 +20 10085503 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:89:40:0,89,1202 +20 10085504 . A . . END=10085506 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,107,1191 +20 10085507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:93:41:0,93,1251 +20 10085508 . A . . END=10085510 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:38:0,112,1230 +20 10085511 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:94:41:0,94,1211 +20 10085512 . G . . END=10085514 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,111,1665 +20 10085515 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:77:38:0,77,1122 +20 10085516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:93:40:0,93,1153 +20 10085517 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:41:0,111,1665 +20 10085518 . G . . END=10085519 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:90:40:0,90,1171 +20 10085520 . C . . END=10085859 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:49:99:37:0,99,1160 +20 10085860 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:92:37:0,92,1155 +20 10085861 . T . . END=10085871 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:37:0,102,1530 +20 10085872 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:95:37:0,95,1155 +20 10085873 . A . . END=10085879 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:36:0,99,1129 +20 10085880 . T . . END=10085884 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:93:37:0,93,1395 +20 10085885 . T . . END=10085895 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:33:0,99,1064 +20 10085896 . A . . END=10085905 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:92:34:0,92,1075 +20 10085906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,102,1530 +20 10085907 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:87:35:0,87,1053 +20 10085908 . C . . END=10085917 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:93:33:0,93,1075 +20 10085918 . A . . END=10085921 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:34:0,99,1485 +20 10085922 . T . . END=10085923 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:93:35:0,93,1395 +20 10085924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10085925 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:96:36:0,96,1104 +20 10085926 . A . . END=10085955 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:35:0,99,1485 +20 10085956 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:87:37:0,87,1094 +20 10085957 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:99:37:0,108,1620 +20 10085958 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:94:37:0,94,1066 +20 10085959 . G . . END=10085960 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:38:99:37:0,108,1620 +20 10085961 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:92:36:0,92,1095 +20 10085962 . G . . END=10086002 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:42:99:37:0,108,1119 +20 10086003 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:93:41:0,93,1167 +20 10086004 . C . . END=10086063 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:38:0,102,1155 +20 10086064 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:94:40:0,94,1152 +20 10086065 . C . . END=10086068 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:41:99:40:0,102,1183 +20 10086069 . A . . END=10086070 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:96:39:0,96,1440 +20 10086071 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:40:99:40:0,99,1485 +20 10086072 . A . . END=10086074 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:96:38:0,96,1440 +20 10086075 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:39:99:39:0,99,1485 +20 10086076 . A . . END=10086080 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:37:96:35:0,96,1440 +20 10086081 . T . . END=10086082 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:35:0,99,1485 +20 10086083 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:71:35:0,71,1007 +20 10086084 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:89:35:0,89,1076 +20 10086085 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:99:35:0,99,1485 +20 10086086 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:72:35:0,72,1049 +20 10086087 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:64:36:0,64,1029 +20 10086088 . A . . END=10086091 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:72:35:0,72,1005 +20 10086092 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:99:36:0,99,1485 +20 10086093 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:75:36:0,75,1008 +20 10086094 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:69:34:0,69,992 +20 10086095 . A . . END=10086101 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:36:72:35:0,72,971 +20 10086102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:53:35:0,53,923 +20 10086103 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:35:72:35:0,72,984 +20 10086104 . A . . END=10086105 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:81:34:0,81,1215 +20 10086106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:69:34:0,69,997 +20 10086107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:34:71:34:0,71,1016 +20 10086108 . A . . END=10086109 GT:DP:GQ:MIN_DP:PL ./.:77:99:54:0,120,1800 ./.:33:60:31:0,60,925 +20 10086110 . G A, . . BaseQRankSum=-3.430e-01;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=-6.800e-01;RAW_MQandDP=380523,108;ReadPosRankSum=0.875 GT:AD:DP:GQ:PL:SB ./.:43,38,0:81:99:1303,0,1506,1432,1621,3053:24,19,19,19 ./.:0,27,0:27:81:868,81,0,868,81,868:0,0,14,13 +20 10086111 . C . . END=10086114 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:63:32:0,63,899 +20 10086115 . A . . END=10086117 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:81:32:0,81,1215 +20 10086118 . A . . END=10086120 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:63:31:0,63,924 +20 10086121 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:31:27:31:0,27,784 +20 10086122 . A . . END=10086123 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:87:30:0,87,1305 +20 10086124 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:78:30:0,78,873 +20 10086125 . A . . END=10086132 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:81:28:0,81,1215 +20 10086133 . G . . END=10086141 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:29:76:28:0,76,879 +20 10086142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:81:28:0,81,1215 +20 10086143 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:73:28:0,73,837 +20 10086144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:50:28:0,50,791 +20 10086145 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:28:78:28:0,78,1170 +20 10086146 . C . . END=10086147 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:29:81:28:0,81,1215 +20 10086148 . A . . END=10086149 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:93:33:0,93,1395 +20 10086150 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:64:33:0,64,937 +20 10086151 . A . . END=10086154 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:90:33:0,90,1350 +20 10086155 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:86:34:0,86,991 +20 10086156 . A . . END=10086160 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:91:33:0,91,1054 +20 10086161 . A . . END=10086162 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:87:35:0,87,1305 +20 10086163 . A . . END=10086170 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:35:90:33:0,90,1350 +20 10086171 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:73:33:0,73,926 +20 10086172 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:68:32:0,68,901 +20 10086173 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:83:32:0,83,946 +20 10086174 . C . . END=10086177 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:30:0,90,899 +20 10086178 . A . . END=10086181 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:30:85:30:0,85,929 +20 10086182 . G . . END=10086190 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:30:0,90,884 +20 10086191 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:75:32:0,75,968 +20 10086192 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:82:32:0,82,974 +20 10086193 . G . . END=10086196 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10086197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:31:78:31:0,78,915 +20 10086198 . T . . END=10086201 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:90:31:0,90,1350 +20 10086202 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:84:33:0,84,991 +20 10086203 . T . . END=10086204 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:99:33:0,99,1027 +20 10086205 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:33:88:33:0,88,1001 +20 10086206 . C . . END=10086207 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:99:33:0,99,1010 +20 10086208 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:90:34:0,90,1036 +20 10086209 . T . . END=10086210 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086211 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:36:97:36:0,97,1048 +20 10086212 . T . . END=10086232 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:39:99:34:0,102,1043 +20 10086233 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:96:38:0,96,1083 +20 10086234 . C . . END=10086260 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:99:36:0,99,1084 +20 10086261 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:98:38:0,98,1105 +20 10086262 . T . . END=10086269 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:37:99:34:0,99,998 +20 10086270 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:32:96:32:0,96,893 +20 10086271 . A . . END=10086282 GT:DP:GQ:MIN_DP:PL ./.:75:99:55:0,120,1800 ./.:38:99:36:0,102,1102 +20 10086283 . G T, . . BaseQRankSum=2.30;ClippingRankSum=0.00;DP=124;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=446400,124;ReadPosRankSum=1.61 GT:AD:DP:GQ:PL:SB ./.:52,32,0:84:99:1054,0,1771,1210,1867,3077:30,22,17,15 ./.:1,37,0:38:99:1096,104,0,1098,111,1105:1,0,20,17 +20 10086284 . G . . END=10086293 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:38:99:37:0,99,1082 +20 10086294 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:90:39:0,90,1125 +20 10086295 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:99:39:0,99,1485 +20 10086296 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:90:39:0,90,1106 +20 10086297 . A . . END=10086303 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:99:35:0,99,1485 +20 10086304 . A . . END=10086306 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:93:34:0,93,1395 +20 10086307 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:87:35:0,87,1305 +20 10086308 . T . . END=10086309 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:90:36:0,90,1350 +20 10086310 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:74:35:0,74,954 +20 10086311 . A . . END=10086317 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:35:90:33:0,90,1350 +20 10086318 . T . . END=10086323 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:33:99:33:0,99,1026 +20 10086324 . A . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:36:95:36:0,95,1103 +20 10086325 . A . . END=10086337 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:39:99:37:0,102,1235 +20 10086338 . T . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:43:88:43:0,88,1225 +20 10086339 . T . . END=10086369 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:46:99:41:0,108,1268 +20 10086370 . G . . . GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:41:91:41:0,91,1176 +20 10086371 . G . . END=10086618 GT:DP:GQ:MIN_DP:PL ./.:80:99:51:0,120,1800 ./.:48:99:36:0,99,1127 +20 10086619 . T A, . . BaseQRankSum=0.256;ClippingRankSum=0.00;DP=107;ExcessHet=3.01;MQRankSum=-1.312e+00;RAW_MQandDP=250610,71;ReadPosRankSum=-5.100e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:45,25,0:70:99:.:825,0,1603,961,1679,2639:18,27,9,16 ./.:.:48:99:36:0,99,1127,99,1127,1127 +20 10086620 . T . . END=10086846 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:48:99:36:0,99,1127 +20 10086847 . G T, . . BaseQRankSum=-2.161e+00;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=129600,36;ReadPosRankSum=0.993 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:81:99:65:.:.:0,120,1800,120,1800,1800 ./.:33,2,0:35:84:.:0|1:10086847_G_T:0,84,922,98,927,941:16,17,2,0 +20 10086848 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:36:99:36:0,102,1530 +20 10086849 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:36:60:36:0,60,975 +20 10086850 . A . . END=10086852 GT:DP:GQ:MIN_DP:PL ./.:81:99:65:0,120,1800 ./.:35:96:33:0,96,1440 +20 10086853 . G A, . . BaseQRankSum=3.92;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=-1.770e-01;RAW_MQandDP=376610,106;ReadPosRankSum=-2.700e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:41,32,0:73:99:.:.:1031,0,1280,1154,1376,2530:21,20,17,15 ./.:0,33,0:33:99:0|1:10086847_G_T:1052,99,0,1052,99,1052:0,0,17,16 +20 10086854 . T . . END=10086857 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:90:33:0,90,1010 +20 10086858 . T . . END=10086864 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:36:99:35:0,102,1530 +20 10086865 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:75:35:0,75,988 +20 10086866 . A . . END=10086884 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:38:99:35:0,99,1032 +20 10086885 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:82:40:0,82,1109 +20 10086886 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:99:40:0,117,1755 +20 10086887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:40:86:40:0,86,1028 +20 10086888 . G . . END=10086925 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:39:99:36:0,104,1121 +20 10086926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:38:77:38:0,77,978 +20 10086927 . C . . END=10086931 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:39:99:37:0,102,1530 +20 10086932 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:37:98:37:0,98,1055 +20 10086933 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10086934 . T . . END=10086945 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:37:93:33:0,93,976 +20 10086946 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:35:88:35:0,88,1025 +20 10086947 . G . . END=10086950 GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:90:30:0,90,909 +20 10086951 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086952 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:32:96:32:0,96,991 +20 10086953 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10086954 . G A, . . BaseQRankSum=2.61;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=363600,101;ReadPosRankSum=-8.120e-01 GT:AD:DP:GQ:PL:SB ./.:34,34,0:68:99:1124,0,1051,1226,1153,2380:16,18,21,13 ./.:0,31,0:31:92:919,92,0,919,92,919:0,0,10,21 +20 10086955 . C . . END=10086956 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:99:34:0,99,1485 +20 10086957 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:91:37:0,91,1044 +20 10086958 . G . . END=10086989 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:41:99:36:0,102,1144 +20 10086990 . A . . END=10086991 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:85:37:0,85,1057 +20 10086992 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:99:38:0,108,1620 +20 10086993 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:38:97:38:0,97,1148 +20 10086994 . T . . END=10086999 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:99:35:0,99,1485 +20 10087000 . C . . END=10087011 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:90:31:0,90,1350 +20 10087012 . A . . END=10087016 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:87:30:0,87,1305 +20 10087017 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10087018 . G . . END=10087021 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:87:32:0,87,1305 +20 10087022 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:78:30:0,78,910 +20 10087023 . T . . END=10087039 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087040 . T . . END=10087053 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:30:0,90,932 +20 10087054 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:74:31:0,74,936 +20 10087055 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:81:31:0,81,944 +20 10087056 . A . . END=10087063 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:30:0,90,970 +20 10087064 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:89:35:0,89,1062 +20 10087065 . T . . END=10087066 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:96:34:0,96,1440 +20 10087067 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:73:33:0,73,978 +20 10087068 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:96:33:0,96,1440 +20 10087069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:64:32:0,64,945 +20 10087070 . A . . END=10087077 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:32:0,90,1014 +20 10087078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087079 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:91:34:0,91,1035 +20 10087080 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:84:33:0,84,967 +20 10087081 . A . . END=10087092 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10087093 . A . . END=10087094 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:87:32:0,87,1305 +20 10087095 . C . . END=10087106 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:75:30:0,75,895 +20 10087107 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:57:30:0,57,880 +20 10087108 . A . . END=10087110 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:72:27:0,72,1080 +20 10087111 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:69:27:0,69,1035 +20 10087112 . C . . END=10087119 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:72:26:0,72,838 +20 10087120 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:27:64:27:0,64,760 +20 10087121 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:75:26:0,75,1125 +20 10087122 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:66:26:0,66,748 +20 10087123 . T . . END=10087131 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:26:72:25:0,72,737 +20 10087132 . T . . END=10087135 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:28:81:28:0,81,848 +20 10087136 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:72:29:0,72,865 +20 10087137 . T . . END=10087138 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:84:29:0,84,1260 +20 10087139 . C . . END=10087140 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:62:28:0,62,852 +20 10087141 . T . . END=10087142 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:81:29:0,81,1215 +20 10087143 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:61:29:0,61,879 +20 10087144 . A . . END=10087155 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:29:81:27:0,81,846 +20 10087156 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:77:30:0,77,933 +20 10087157 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:93:31:0,93,964 +20 10087158 . T . . END=10087164 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:84:30:0,84,1260 +20 10087165 . G . . END=10087168 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:31:0,90,1350 +20 10087169 . A . . END=10087173 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:84:32:0,84,1260 +20 10087174 . A . . END=10087175 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:32:0,90,1350 +20 10087176 . C . . END=10087179 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:83:31:0,83,1014 +20 10087180 . C . . END=10087186 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:30:0,90,940 +20 10087187 . A . . END=10087194 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:30:87:29:0,87,921 +20 10087195 . G . . END=10087196 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:90:32:0,90,1350 +20 10087197 . A . . END=10087201 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:81:32:0,81,968 +20 10087202 . T . . END=10087210 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:33:90:33:0,90,1350 +20 10087211 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:32:70:32:0,70,999 +20 10087212 . T . . END=10087216 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:90:31:0,90,1350 +20 10087217 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:87:31:0,87,1305 +20 10087218 . C . . END=10087219 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:31:93:31:0,93,1002 +20 10087220 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:85:34:0,85,1057 +20 10087221 . C . . END=10087222 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:34:99:34:0,99,1128 +20 10087223 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:36:87:36:0,87,1080 +20 10087224 . T . . END=10087225 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:99:37:0,102,1530 +20 10087226 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:37:94:37:0,94,1133 +20 10087227 . T . . END=10087229 GT:DP:GQ:MIN_DP:PL ./.:70:99:55:0,120,1800 ./.:36:99:36:0,102,1530 +20 10087230 . A G, . . BaseQRankSum=-1.427e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.01;MQRankSum=1.71;RAW_MQandDP=455261,130;ReadPosRankSum=0.893 GT:AD:DP:GQ:PL:SB ./.:42,54,0:96:99:1871,0,1428,1998,1590,3588:22,20,23,31 ./.:1,33,0:34:66:957,66,0,960,97,992:1,0,17,16 +20 10087231 . C . . END=10087393 GT:DP:GQ:MIN_DP:PL ./.:101:99:84:0,120,1800 ./.:46:99:38:0,99,1150 +20 10087394 . T G, . . BaseQRankSum=-2.340e+00;ClippingRankSum=0.00;DP=122;ExcessHet=3.01;MQRankSum=1.21;RAW_MQandDP=299641,84;ReadPosRankSum=1.18 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,49,0:84:99:.:1717,0,1186,1823,1334,3156:21,14,24,25 ./.:.:46:99:38:0,99,1150,99,1150,1150 +20 10087395 . T . . END=10087438 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:38:0,99,1150 +20 10087439 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:44:93:44:0,93,1266 +20 10087440 . T . . END=10087450 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:47:99:44:0,106,1300 +20 10087451 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:45:89:45:0,89,1335 +20 10087452 . A . . END=10087572 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:40:0,101,1289 +20 10087573 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:47:91:47:0,91,1238 +20 10087574 . G . . END=10087627 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:46:99:40:0,111,1665 +20 10087628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:42:93:42:0,93,1220 +20 10087629 . C . . END=10087662 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:40:99:38:0,102,1187 +20 10087663 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:97:37:0,97,1129 +20 10087664 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:99:37:0,102,1530 +20 10087665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:37:93:37:0,93,1143 +20 10087666 . G . . END=10087673 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:99:34:0,102,968 +20 10087674 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:94:35:0,94,1049 +20 10087675 . C . . END=10087679 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087680 . A . . END=10087683 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:81:35:0,81,1215 +20 10087684 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:35:73:35:0,73,1032 +20 10087685 . A . . END=10087689 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:34:81:33:0,81,1215 +20 10087690 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:33:78:33:0,78,1007 +20 10087691 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:29:0,81,1215 +20 10087692 . T . . END=10087701 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:27:75:25:0,75,761 +20 10087702 . T . . END=10087709 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:28:0,81,1215 +20 10087710 . C . . END=10087712 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:78:29:0,78,1170 +20 10087713 . A . . END=10087714 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:33:84:32:0,84,1260 +20 10087715 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:31:68:31:0,68,964 +20 10087716 . T . . END=10087725 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087726 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:71:30:0,71,869 +20 10087727 . T . . END=10087731 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:81:29:0,81,1215 +20 10087732 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:75:29:0,75,1125 +20 10087733 . C . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:49:29:0,49,772 +20 10087734 . T . . END=10087742 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:27:72:27:0,72,1080 +20 10087743 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:26:60:26:0,60,763 +20 10087744 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:26:75:26:0,75,1125 +20 10087745 . G . . END=10087750 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:29:81:28:0,81,822 +20 10087751 . T . . . GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:90:30:0,90,872 +20 10087752 . G . . END=10087753 GT:DP:GQ:MIN_DP:PL ./.:83:99:61:0,120,1800 ./.:30:87:29:0,87,856 +20 10087754 . T G, . . BaseQRankSum=0.355;ClippingRankSum=0.00;DP=110;ExcessHet=3.01;MQRankSum=2.19;RAW_MQandDP=288141,79;ReadPosRankSum=-8.310e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,41,0:78:99:.:1376,0,1239,1488,1362,2849:23,14,24,17 ./.:.:31:90:31:0,90,1350,90,1350,1350 +20 10087755 . G . . END=10087757 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:31:90:31:0,90,1350 +20 10087758 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:34:99:34:0,99,1485 +20 10087759 . G . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:34:56:34:0,56,951 +20 10087760 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:34:93:34:0,93,1395 +20 10087761 . A . . END=10087762 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:76:36:0,76,988 +20 10087763 . A . . END=10087764 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:96:37:0,96,1440 +20 10087765 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:99:38:0,99,1485 +20 10087766 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:67:37:0,67,982 +20 10087767 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:93:38:0,93,1395 +20 10087768 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:40:99:40:0,99,1485 +20 10087769 . A . . END=10087776 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:90:37:0,90,1350 +20 10087777 . T . . END=10087781 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:81:36:0,81,1114 +20 10087782 . A . . END=10087783 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:39:72:39:0,72,1080 +20 10087784 . G . . END=10087791 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:39:60:36:0,60,900 +20 10087792 . G . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:57:38:0,57,855 +20 10087793 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:54:38:0,54,810 +20 10087794 . C . . END=10087797 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:38:51:37:0,51,765 +20 10087798 . A . . END=10087799 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:48:37:0,48,720 +20 10087800 . A . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:42:37:0,42,630 +20 10087801 . T . . . GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:37:39:37:0,39,585 +20 10087802 . G . . END=10087803 GT:DP:GQ:MIN_DP:PL ./.:102:99:83:0,120,1800 ./.:36:36:35:0,36,540 +20 10087804 . C T, . . BaseQRankSum=1.94;ClippingRankSum=0.00;DP=132;ExcessHet=3.01;MQRankSum=2.62;RAW_MQandDP=491010,132;ReadPosRankSum=1.02 GT:AD:DP:GQ:PL:SB ./.:50,50,0:100:99:1648,0,1511,1797,1661,3458:33,17,28,22 ./.:0,32,0:32:94:882,94,0,882,94,882:0,0,23,9 +20 10087805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:101:99:97:0,120,1800 ./.:36:33:36:0,33,495 +20 10087806 . G . . END=10087810 GT:DP:GQ:MIN_DP:PL ./.:101:99:97:0,120,1800 ./.:36:24:36:0,24,360 +20 10087811 . A . . END=10087814 GT:DP:GQ:MIN_DP:PL ./.:101:99:97:0,120,1800 ./.:36:12:36:0,12,180 +20 10087815 . A . . END=10087819 GT:DP:GQ:MIN_DP:PL ./.:101:99:97:0,120,1800 ./.:37:3:37:0,3,45 +20 10087820 . CAG CAGAGAG,C,CAGAG, . . BaseQRankSum=-1.974e+00;ClippingRankSum=0.00;DP=133;ExcessHet=3.01;MQRankSum=0.422;RAW_MQandDP=492900,133;ReadPosRankSum=-9.000e-03 GT:AD:DP:GQ:PL:SB ./.:35,0,0,18,0:53:99:466,661,2189,669,2237,2577,0,1238,1197,1168,661,2189,2237,1238,2189:17,18,8,10 ./.:0,32,0,0,0:32:96:1428,96,0,1428,96,1428,1428,96,1428,1428,1428,96,1428,1428,1428:0,0,21,11 +20 10087821 . A *, . . DP=134 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,0,0:53:99:.:466,669,2577,661,2237,2189:17,18,8,10 ./.:.:35:0:35:0,0,0,0,0,0 +20 10087822 . G *, . . DP=134 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,0,0:53:99:.:466,669,2577,661,2237,2189:17,18,8,10 ./.:.:35:72:35:0,72,995,72,995,995 +20 10087823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:35:72:35:0,72,995 +20 10087824 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:35:99:35:0,99,1485 +20 10087825 . A . . END=10087826 GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:35:72:35:0,72,1027 +20 10087827 . A . . END=10087832 GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:35:99:35:0,102,1530 +20 10087833 . A . . END=10087834 GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:36:90:35:0,90,1350 +20 10087835 . A . . END=10087836 GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:36:83:36:0,83,1046 +20 10087837 . A . . END=10087840 GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:36:93:35:0,93,1395 +20 10087841 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:83:0,120,1800 ./.:38:99:38:0,99,1485 +20 10087842 . A . . . GT:DP:GQ:MIN_DP:PL ./.:82:64:82:0,64,2763 ./.:36:95:36:0,95,1055 +20 10087843 . A . . END=10087846 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:37:87:36:0,87,1305 +20 10087847 . A . . END=10087860 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:90:34:0,90,1350 +20 10087861 . C . . END=10087865 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:33:83:32:0,83,871 +20 10087866 . C . . END=10087869 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:34:90:33:0,90,1350 +20 10087870 . A . . END=10087871 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:36:99:36:0,99,1485 +20 10087872 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:35:88:35:0,88,1036 +20 10087873 . A . . END=10087877 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:36:99:33:0,99,965 +20 10087878 . T . . END=10087879 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:35:84:34:0,84,860 +20 10087880 . C . . END=10087886 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:37:0,108,1620 +20 10087887 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:76:41:0,76,1114 +20 10087888 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:41:0,106,1200 +20 10087889 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:60:39:0,60,932 +20 10087890 . A . . END=10087899 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:37:0,101,1079 +20 10087900 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:84:38:0,84,1053 +20 10087901 . G . . END=10087909 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:37:0,103,1190 +20 10087910 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:98:39:0,98,1045 +20 10087911 . A . . END=10087913 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:99:37:0,100,1142 +20 10087914 . G . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:96:38:0,96,1096 +20 10087915 . C . . END=10087917 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:99:38:0,111,1665 +20 10087918 . C . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:40:59:40:0,59,1086 +20 10087919 . A . . END=10087922 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:99:39:0,99,1150 +20 10087923 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:39:63:39:0,63,1069 +20 10087924 . A . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:38:90:38:0,90,1133 +20 10087925 . A . . END=10087940 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:41:99:37:0,103,1118 +20 10087941 . T . . . GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:46:84:46:0,84,1209 +20 10087942 . T . . END=10088062 GT:DP:GQ:MIN_DP:PL ./.:95:99:71:0,120,1800 ./.:51:99:46:0,120,1800 +20 10088063 . C T, . . BaseQRankSum=3.41;ClippingRankSum=0.00;DP=140;ExcessHet=3.01;MQRankSum=0.515;RAW_MQandDP=496779,140;ReadPosRankSum=0.354 GT:AD:DP:GQ:PL:SB ./.:49,44,0:93:99:1446,0,1403,1592,1535,3128:24,25,18,26 ./.:0,42,0:42:99:1307,125,0,1307,125,1307:0,0,16,26 +20 10088064 . G . . END=10088077 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:46:99:44:0,111,1444 +20 10088078 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:44:98:44:0,98,1353 +20 10088079 . C . . END=10088116 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:38:99:34:0,99,1085 +20 10088117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:36:80:36:0,80,1094 +20 10088118 . A . . END=10088309 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:46:99:38:0,102,1194 +20 10088310 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:92:42:0,92,1224 +20 10088311 . A . . END=10088337 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:39:0,102,1056 +20 10088338 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:38:97:38:0,97,1102 +20 10088339 . A . . END=10088358 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:99:36:0,99,1019 +20 10088359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:37:98:37:0,98,1093 +20 10088360 . A . . END=10088381 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:41:99:35:0,99,1092 +20 10088382 . A . . END=10088396 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:33:0,90,1061 +20 10088397 . A . . END=10088402 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:82:33:0,82,1012 +20 10088403 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:65:33:0,65,1001 +20 10088404 . A . . END=10088406 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:81:31:0,81,1215 +20 10088407 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:77:32:0,77,950 +20 10088408 . C . . END=10088410 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:31:0,81,1215 +20 10088411 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:78:30:0,78,934 +20 10088412 . A . . END=10088417 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:84:28:0,84,862 +20 10088418 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:57:30:0,57,865 +20 10088419 . A . . END=10088423 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:81:29:0,81,909 +20 10088424 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:78:30:0,78,886 +20 10088425 . C . . END=10088427 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:31:0,81,1215 +20 10088428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:78:31:0,78,968 +20 10088429 . A . . END=10088431 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:30:0,81,1215 +20 10088432 . A . . END=10088434 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:78:29:0,78,1170 +20 10088435 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:28:67:28:0,67,772 +20 10088436 . T . . END=10088444 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:81:29:0,81,1215 +20 10088445 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:30:58:30:0,58,860 +20 10088446 . A . . END=10088450 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:29:81:29:0,81,942 +20 10088451 . A . . END=10088458 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:90:31:0,90,946 +20 10088459 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:80:32:0,80,962 +20 10088460 . A . . END=10088464 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:93:32:0,93,1395 +20 10088465 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:87:32:0,87,1305 +20 10088466 . A . . END=10088469 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:90:32:0,90,1350 +20 10088470 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:79:33:0,79,1007 +20 10088471 . C . . END=10088472 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:34:0,93,1395 +20 10088473 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:88:35:0,88,1036 +20 10088474 . G . . END=10088479 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:31:0,93,1008 +20 10088480 . T . . END=10088481 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088482 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:96:34:0,96,1440 +20 10088483 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:85:33:0,85,940 +20 10088484 . T . . END=10088485 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:96:32:0,96,1075 +20 10088486 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088487 . A . . END=10088491 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:93:34:0,93,1395 +20 10088492 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:84:34:0,84,952 +20 10088493 . A . . END=10088497 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:34:0,90,1350 +20 10088498 . T . . END=10088502 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:31:82:30:0,82,930 +20 10088503 . A . . END=10088504 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:90:32:0,90,992 +20 10088505 . T . . END=10088507 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:34:0,99,1485 +20 10088508 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:77:35:0,77,1052 +20 10088509 . T . . END=10088511 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:93:34:0,93,1395 +20 10088512 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:87:34:0,87,1054 +20 10088513 . A . . END=10088517 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:93:33:0,93,1395 +20 10088518 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:82:33:0,82,966 +20 10088519 . A . . END=10088533 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:90:31:0,90,955 +20 10088534 . G . . END=10088535 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:99:34:0,99,1485 +20 10088536 . C . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:87:34:0,87,980 +20 10088537 . C . . END=10088541 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:34:0,102,1061 +20 10088542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:32:96:32:0,96,1032 +20 10088543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:33:99:33:0,99,980 +20 10088544 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:34:86:34:0,86,938 +20 10088545 . T . . END=10088546 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:99:35:0,102,1530 +20 10088547 . G . . END=10088549 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:35:90:35:0,90,1350 +20 10088550 . A . . END=10088598 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:99:37:0,99,1157 +20 10088599 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:87:40:0,87,1113 +20 10088600 . C . . END=10088601 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:41:0,120,1800 +20 10088602 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:41:96:41:0,96,1135 +20 10088603 . A . . END=10088605 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:42:99:41:0,120,1800 +20 10088606 . T . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:40:92:40:0,92,1165 +20 10088607 . G . . END=10088647 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:43:99:42:0,99,1120 +20 10088648 . G . . . GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:44:82:44:0,82,1206 +20 10088649 . C . . END=10088698 GT:DP:GQ:MIN_DP:PL ./.:87:99:60:0,120,1800 ./.:51:99:45:0,117,1316 +20 10088699 . C T, . . BaseQRankSum=3.80;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=-3.140e+00;RAW_MQandDP=378442,113;ReadPosRankSum=-5.770e-01 GT:AD:DP:GQ:PL:SB ./.:36,26,0:62:99:805,0,1088,913,1166,2079:15,21,19,7 ./.:0,45,0:45:99:1405,135,0,1405,135,1405:0,0,24,21 +20 10088700 . G . . END=10088718 GT:DP:GQ:MIN_DP:PL ./.:54:99:52:0,120,1800 ./.:46:99:44:0,99,1303 +20 10088719 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:52:0,120,1800 ./.:44:78:44:0,78,1193 +20 10088720 . C . . END=10088729 GT:DP:GQ:MIN_DP:PL ./.:54:99:52:0,120,1800 ./.:44:99:43:0,100,1277 +20 10088730 . G A, . . BaseQRankSum=0.224;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=-4.839e+00;RAW_MQandDP=299103,95;ReadPosRankSum=0.433 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:29,23,0:52:99:0|1:10088730_G_A:1001,0,1152,1092,1231,2322:11,18,16,7 ./.:0,41,0:41:99:0|1:10088730_G_A:1825,123,0,1825,123,1825:0,0,23,18 +20 10088731 . G . . END=10088735 GT:DP:GQ:MIN_DP:PL ./.:56:99:56:0,120,1800 ./.:43:99:42:0,108,1292 +20 10088736 . A C, . . BaseQRankSum=0.282;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=-5.169e+00;RAW_MQandDP=307627,100;ReadPosRankSum=-4.200e-02 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:28,27,0:55:99:0|1:10088730_G_A:1110,0,1194,1203,1281,2484:10,18,16,11 ./.:0,43,0:43:99:0|1:10088730_G_A:1999,138,0,1999,138,1999:0,0,23,20 +20 10088737 . C . . END=10088746 GT:DP:GQ:MIN_DP:PL ./.:57:99:53:0,120,1800 ./.:46:99:45:0,120,1800 +20 10088747 . A G, . . BaseQRankSum=-3.877e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=-4.907e+00;RAW_MQandDP=318584,104;ReadPosRankSum=-3.390e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:25,29,0:54:99:0|1:10088730_G_A:1140,0,995,1219,1085,2304:10,15,18,11 ./.:0,47,0:47:99:0|1:10088730_G_A:2038,144,0,2038,144,2038:0,0,25,22 +20 10088748 . G . . END=10088780 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,109,1710 ./.:45:99:42:0,112,1329 +20 10088781 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,109,1710 ./.:41:92:41:0,92,1212 +20 10088782 . T . . END=10088797 GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,109,1710 ./.:41:99:39:0,99,1485 +20 10088798 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:46:0,109,1710 ./.:40:96:40:0,96,1440 +20 10088799 . G A, . . BaseQRankSum=5.50;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=-2.498e+00;RAW_MQandDP=297185,95;ReadPosRankSum=1.35 GT:AD:DP:GQ:PL:SB ./.:22,31,0:53:99:1047,0,617,1114,711,1824:14,8,12,19 ./.:0,40,0:40:99:1320,120,0,1320,120,1320:0,0,20,20 +20 10088800 . T . . END=10088802 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:39:93:39:0,93,1395 +20 10088803 . C . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:41:99:41:0,99,1485 +20 10088804 . T . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:39:96:39:0,96,1440 +20 10088805 . A . . END=10088807 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:39:99:39:0,99,1485 +20 10088808 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:38:96:38:0,96,1440 +20 10088809 . A . . END=10088812 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:38:99:37:0,99,1485 +20 10088813 . T . . END=10088815 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:37:96:37:0,96,1440 +20 10088816 . A . . END=10088819 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:38:99:35:0,99,1485 +20 10088820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:35:96:35:0,96,1440 +20 10088821 . A . . END=10088831 GT:DP:GQ:MIN_DP:PL ./.:54:99:50:0,108,1800 ./.:37:99:34:0,99,1043 +20 10088832 . G . . END=10088842 GT:DP:GQ:MIN_DP:PL ./.:53:63:36:0,63,945 ./.:37:99:34:0,99,1043 +20 10088843 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:16:25:0,16,759 ./.:37:99:34:0,99,1043 +20 10088844 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:37:25:0,37,718 ./.:37:99:34:0,99,1043 +20 10088845 . C . . . GT:DP:GQ:MIN_DP:PL ./.:26:38:26:0,38,870 ./.:37:99:34:0,99,1043 +20 10088846 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:60:25:0,60,900 ./.:37:99:34:0,99,1043 +20 10088847 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:51:25:0,51,870 ./.:37:99:34:0,99,1043 +20 10088848 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:63:25:0,63,945 ./.:37:99:34:0,99,1043 +20 10088849 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:54:25:0,54,810 ./.:37:99:34:0,99,1043 +20 10088850 . A . . END=10088851 GT:DP:GQ:MIN_DP:PL ./.:26:57:26:0,57,855 ./.:37:99:34:0,99,1043 +20 10088852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:48:25:0,48,720 ./.:37:99:34:0,99,1043 +20 10088853 . C . . END=10088854 GT:DP:GQ:MIN_DP:PL ./.:26:51:26:0,51,765 ./.:37:99:34:0,99,1043 +20 10088855 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:25:0,57,855 ./.:37:99:34:0,99,1043 +20 10088856 . A . . . GT:DP:GQ:MIN_DP:PL ./.:27:57:25:0,57,855 ./.:34:96:33:0,96,1440 +20 10088857 . G . . END=10088860 GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:96:33:0,96,1440 +20 10088861 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:35:87:35:0,87,991 +20 10088862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:74:34:0,74,991 +20 10088863 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:63:27:0,63,945 ./.:34:96:34:0,96,1440 +20 10088864 . G . . END=10088865 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:35:99:33:0,99,990 +20 10088866 . G . . . GT:DP:GQ:MIN_DP:PL ./.:32:87:32:0,87,1305 ./.:35:99:33:0,99,990 +20 10088867 . A . . END=10088870 GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:35:99:33:0,99,990 +20 10088871 . T . . END=10088875 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:35:99:33:0,99,990 +20 10088876 . C . . END=10088883 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:36:90:35:0,90,1053 +20 10088884 . T . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:35:78:35:0,78,983 +20 10088885 . G . . END=10088887 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:34:81:31:0,81,886 +20 10088888 . G . . END=10088889 GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:90:31:0,90,1350 +20 10088890 . G . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:31:87:31:0,87,1305 +20 10088891 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:90:32:0,90,1350 +20 10088892 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:32:87:32:0,87,1305 +20 10088893 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:33:90:33:0,90,1350 +20 10088894 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:99:33:0,99,1294 ./.:33:87:33:0,87,1305 +20 10088895 . C T, . . BaseQRankSum=2.46;ClippingRankSum=0.00;DP=75;ExcessHet=3.01;MQRankSum=0.577;RAW_MQandDP=252012,75;ReadPosRankSum=0.907 GT:AD:DP:GQ:PL:SB ./.:23,18,0:41:99:561,0,673,630,726,1356:10,13,8,10 ./.:0,31,0:31:92:932,92,0,932,92,932:0,0,18,13 +20 10088896 . G . . END=10088903 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:33:80:29:0,80,790 +20 10088904 . G . . END=10088905 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:31:90:31:0,90,1350 +20 10088906 . G . . END=10088910 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:30:84:28:0,84,866 +20 10088911 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:31:60:31:0,60,858 +20 10088912 . A . . END=10088916 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:32:84:30:0,84,1260 +20 10088917 . G . . END=10088928 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:34:72:32:0,72,1080 +20 10088929 . C . . END=10088937 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:39:66:35:0,66,990 +20 10088938 . T . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:39:57:39:0,57,1004 +20 10088939 . C . . END=10088940 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:40:60:40:0,60,900 +20 10088941 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:39:57:39:0,57,855 +20 10088942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:38:54:38:0,54,810 +20 10088943 . C . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:39:51:39:0,51,765 +20 10088944 . C . . END=10088947 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:40:48:38:0,48,720 +20 10088948 . A . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:42:39:42:0,39,585 +20 10088949 . T . . END=10088952 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:40:36:39:0,36,540 +20 10088953 . T . . END=10088956 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:43:39:42:0,39,585 +20 10088957 . C . . END=10088959 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:40:33:39:0,33,495 +20 10088960 . G . . . GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:39:30:39:0,30,450 +20 10088961 . A . . END=10088963 GT:DP:GQ:MIN_DP:PL ./.:50:99:42:0,99,1485 ./.:40:27:38:0,27,405 +20 10088964 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:61:68:0,61,1979 ./.:37:30:37:0,30,450 +20 10088965 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:55:68:0,55,2178 ./.:41:27:41:0,27,405 +20 10088966 . C . . END=10088967 GT:DP:GQ:MIN_DP:PL ./.:71:0:70:0,0,2081 ./.:42:0:41:0,0,683 +20 10088968 . C CAAA, . . BaseQRankSum=0.497;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=-4.750e+00;RAW_MQandDP=292450,95;ReadPosRankSum=1.02 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:30,23,0:53:99:0|1:10088968_C_CAAA:1213,0,1367,1310,1463,2773:16,14,14,9 ./.:0,30,0:30:99:0|1:10088968_C_CAAA:1781,128,0,1781,128,1781:0,0,18,12 +20 10088969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:72:0:72:0,0,1374 ./.:53:0:53:0,0,0 +20 10088970 . A . . END=10088978 GT:DP:GQ:MIN_DP:PL ./.:76:99:75:0,120,1800 ./.:54:99:53:0,120,1800 +20 10088979 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:57:78:0,57,2694 ./.:54:99:53:0,120,1800 +20 10088980 . T C, . . BaseQRankSum=-1.585e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=-5.232e+00;RAW_MQandDP=332195,113;ReadPosRankSum=0.999 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:37,31,0:68:99:0|1:10088968_C_CAAA:1276,0,1627,1394,1729,3123:19,18,15,16 ./.:0,44,0:44:99:0|1:10088968_C_CAAA:1859,135,0,1859,135,1859:0,0,18,26 +20 10088981 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:40:78:0,40,2558 ./.:54:99:54:0,120,1800 +20 10088982 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:54:99:54:0,120,1800 +20 10088983 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:51:43:51:0,43,1358 +20 10088984 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:77:0,120,1800 ./.:53:99:53:0,120,1800 +20 10088985 . T C, . . BaseQRankSum=-1.920e-01;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=-5.248e+00;RAW_MQandDP=346085,118;ReadPosRankSum=1.38 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:42,32,0:74:99:0|1:10088968_C_CAAA:1207,0,1729,1333,1826,3159:22,20,15,17 ./.:0,43,0:43:99:.:.:1926,132,0,1926,132,1926:0,0,18,25 +20 10088986 . A . . END=10088989 GT:DP:GQ:MIN_DP:PL ./.:82:99:81:0,120,1800 ./.:52:99:49:0,110,1473 +20 10088990 . A . . . GT:DP:GQ:MIN_DP:PL ./.:84:7:84:0,7,2771 ./.:52:99:49:0,110,1473 +20 10088991 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:95:81:0,95,2703 ./.:52:99:49:0,110,1473 +20 10088992 . C . . . GT:DP:GQ:MIN_DP:PL ./.:80:88:80:0,88,2845 ./.:52:99:49:0,110,1473 +20 10088993 . A . . END=10089025 GT:DP:GQ:MIN_DP:PL ./.:84:99:76:0,112,1800 ./.:52:99:49:0,110,1473 +20 10089026 . G . . . GT:DP:GQ:MIN_DP:PL ./.:74:0:74:0,0,2116 ./.:52:99:49:0,110,1473 +20 10089027 . A . . END=10089029 GT:DP:GQ:MIN_DP:PL ./.:80:99:77:0,120,1800 ./.:52:99:49:0,110,1473 +20 10089030 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:83:76:0,83,2254 ./.:51:89:51:0,89,1483 +20 10089031 . A . . END=10089036 GT:DP:GQ:MIN_DP:PL ./.:83:99:78:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089037 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:40:82:0,40,2255 ./.:50:99:46:0,103,1428 +20 10089038 . A . . END=10089042 GT:DP:GQ:MIN_DP:PL ./.:83:99:81:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:76:79:76:0,79,2231 ./.:50:99:46:0,103,1428 +20 10089044 . G . . END=10089074 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:50:99:46:0,103,1428 +20 10089075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:45:88:45:0,88,1279 +20 10089076 . C . . END=10089147 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:99:41:0,101,1310 +20 10089148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:41:91:41:0,91,1207 +20 10089149 . A G, . . BaseQRankSum=1.75;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=144000,40;ReadPosRankSum=-4.740e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:82:99:74:0,120,1800,120,1800,1800 ./.:1,39,0:40:99:.:1137,108,0,1140,115,1147:0,1,24,15 +20 10089150 . A . . END=10089162 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:39:99:36:0,108,1146 +20 10089163 . T . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:42:93:42:0,93,1173 +20 10089164 . A . . END=10089180 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:99:41:0,120,1800 +20 10089181 . G . . . GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:44:98:44:0,98,1273 +20 10089182 . A . . END=10089440 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:48:99:38:0,102,1104 +20 10089441 . A G, . . BaseQRankSum=-4.885e+00;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=-9.480e-01;RAW_MQandDP=270841,76;ReadPosRankSum=0.161 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,39,0:76:99:.:1208,0,1313,1319,1430,2749:19,18,14,25 ./.:.:48:99:38:0,102,1104,102,1104,1104 +20 10089442 . G . . END=10089524 GT:DP:GQ:MIN_DP:PL ./.:82:99:74:0,120,1800 ./.:48:99:38:0,102,1104 +20 10089525 . C T, . . BaseQRankSum=5.86;ClippingRankSum=0.00;DP=125;ExcessHet=3.01;MQRankSum=1.53;RAW_MQandDP=445010,125;ReadPosRankSum=0.428 GT:AD:DP:GQ:PL:SB ./.:38,43,0:81:99:1577,0,1088,1691,1217,2908:22,16,20,23 ./.:0,43,0:43:99:1352,128,0,1352,128,1352:0,0,18,25 +20 10089526 . G . . END=10089650 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:49:99:46:0,103,1431 +20 10089651 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:46:94:46:0,94,1299 +20 10089652 . A . . END=10089694 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:99:40:0,99,1155 +20 10089695 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:42:97:42:0,97,1247 +20 10089696 . G . . END=10089703 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:99:42:0,110,1230 +20 10089704 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:91:43:0,91,1197 +20 10089705 . T . . END=10089752 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:99:37:0,99,1077 +20 10089753 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:42:97:42:0,97,1168 +20 10089754 . C . . END=10089820 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:47:99:41:0,99,1068 +20 10089821 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:45:87:45:0,87,1261 +20 10089822 . C . . END=10089861 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:44:99:42:0,111,1258 +20 10089862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:95:41:0,95,1201 +20 10089863 . A . . END=10089881 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:40:99:35:0,105,1111 +20 10089882 . G . . END=10089883 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:38:97:38:0,97,1100 +20 10089884 . T . . END=10089928 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:39:99:37:0,99,1147 +20 10089929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:37:95:37:0,95,1123 +20 10089930 . T . . END=10089932 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:38:99:37:0,108,1173 +20 10089933 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:36:96:36:0,96,1104 +20 10089934 . G . . END=10089940 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:37:99:36:0,108,1099 +20 10089941 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:38:95:38:0,95,1057 +20 10089942 . A . . END=10089952 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:38:99:37:0,99,1485 +20 10089953 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:37:94:37:0,94,1095 +20 10089954 . A . . END=10089960 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:36:99:35:0,102,1530 +20 10089961 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:35:94:35:0,94,1045 +20 10089962 . A . . END=10089975 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:35:99:35:0,99,1485 +20 10089976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:35:94:35:0,94,1033 +20 10089977 . C . . END=10089980 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:36:99:36:0,105,1124 +20 10089981 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:36:95:36:0,95,1107 +20 10089982 . G . . END=10089984 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:39:99:37:0,108,1620 +20 10089985 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:91:41:0,91,1281 +20 10089986 . G . . END=10089994 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:99:41:0,100,1213 +20 10089995 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:78:41:0,78,1122 +20 10089996 . G . . END=10090025 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:99:39:0,105,1276 +20 10090026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:39:88:39:0,88,1146 +20 10090027 . A . . END=10090044 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:39:99:35:0,105,1095 +20 10090045 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:36:96:36:0,96,1105 +20 10090046 . A . . END=10090060 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:41:99:38:0,105,1145 +20 10090061 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:40:86:40:0,86,1180 +20 10090062 . A . . END=10090243 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:54:99:38:0,101,1290 +20 10090244 . A . . END=10090246 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:48:93:47:0,93,1395 +20 10090247 . T . . END=10090256 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:46:81:40:0,81,1215 +20 10090257 . T . . END=10090259 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:44:72:44:0,72,1080 +20 10090260 . A . . END=10090266 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:45:60:43:0,60,900 +20 10090267 . A . . END=10090268 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:57:42:0,57,855 +20 10090269 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:54:43:0,54,810 +20 10090270 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:51:43:0,51,765 +20 10090271 . G . . END=10090272 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:42:48:42:0,48,720 +20 10090273 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:42:45:42:0,45,675 +20 10090274 . A . . END=10090275 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:33:42:0,33,495 +20 10090276 . A . . END=10090279 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:30:41:0,30,450 +20 10090280 . T . . END=10090281 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:42:27:40:0,27,405 +20 10090282 . A . . END=10090283 GT:DP:GQ:MIN_DP:PL ./.:73:99:55:0,108,1620 ./.:43:24:42:0,24,360 +20 10090284 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:87:69:0,87,1305 ./.:43:15:42:0,15,225 +20 10090285 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:90:70:0,90,1350 ./.:43:15:42:0,15,225 +20 10090286 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:90:70:0,90,1350 ./.:39:12:39:0,12,180 +20 10090287 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:90:70:0,90,1350 ./.:39:9:38:0,9,135 +20 10090288 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:78:70:0,78,1170 ./.:39:9:38:0,9,135 +20 10090289 . CAA C,CA, . . BaseQRankSum=0.441;ClippingRankSum=0.00;DP=118;ExcessHet=3.01;MQRankSum=1.39;RAW_MQandDP=424482,118;ReadPosRankSum=-2.230e-01 GT:AD:DP:GQ:PL:SB ./.:14,4,20,0:38:99:422,360,986,0,261,230,477,867,348,928:7,7,11,13 ./.:1,29,0,0:30:66:1009,66,0,1012,88,1033,1012,88,1033,1033:0,1,12,17 +20 10090290 . A *, . . DP=118 GT:AD:DP:GQ:PL:SB ./.:14,20,0:38:99:422,0,230,477,348,928:7,7,11,13 ./.:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090291 . A *, . . DP=118 GT:AD:DP:GQ:PL:SB ./.:14,20,0:38:99:422,0,230,477,348,928:7,7,11,13 ./.:1,29,0:30:66:1009,66,0,1012,88,1033:0,1,12,17 +20 10090292 . A . . . GT:DP:GQ:MIN_DP:PL ./.:79:38:79:0,38,2756 ./.:41:0:41:0,0,0 +20 10090293 . A . . END=10090297 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:41:0,102,1530 +20 10090298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:86:42:0,86,1250 +20 10090299 . A . . END=10090303 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:99:42:0,105,1250 +20 10090304 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:86:43:0,86,1261 +20 10090305 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:96:43:0,96,1291 +20 10090306 . G . . END=10090307 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:81:41:0,81,1190 +20 10090308 . A . . END=10090465 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:51:99:41:0,99,1273 +20 10090466 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:95:42:0,95,1329 +20 10090467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:86:43:0,86,1291 +20 10090468 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:97:43:0,97,1349 +20 10090469 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:45:99:45:0,101,1379 +20 10090470 . G . . END=10090471 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:92:42:0,92,1230 +20 10090472 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:41:0,117,1755 +20 10090473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:93:42:0,93,1309 +20 10090474 . G . . END=10090475 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:86:40:0,86,1194 +20 10090476 . C . . END=10090477 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:99:38:0,100,1148 +20 10090478 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:86:40:0,86,1182 +20 10090479 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:75:40:0,75,1155 +20 10090480 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,102,1530 +20 10090481 . T . . END=10090482 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:91:41:0,91,1237 +20 10090483 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:88:41:0,88,1228 +20 10090484 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,102,1530 +20 10090485 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:88:40:0,88,1247 +20 10090486 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:73:36:0,73,1070 +20 10090487 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:82:39:0,82,1145 +20 10090488 . C . . END=10090490 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:99:36:0,99,1485 +20 10090491 . G . . END=10090492 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:70:35:0,70,965 +20 10090493 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:34:67:34:0,67,1006 +20 10090494 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:99:35:0,99,1485 +20 10090495 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:71:35:0,71,1080 +20 10090496 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:35:56:35:0,56,1025 +20 10090497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:34:67:34:0,67,1022 +20 10090498 . C . . END=10090500 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:37:99:36:0,105,1575 +20 10090501 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:79:38:0,79,1173 +20 10090502 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:99:38:0,108,1620 +20 10090503 . T . . END=10090505 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:76:37:0,76,1119 +20 10090506 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:37:80:37:0,80,1107 +20 10090507 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:36:74:36:0,74,1071 +20 10090508 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:82:39:0,82,1160 +20 10090509 . C . . END=10090510 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:99:38:0,105,1575 +20 10090511 . A . . END=10090513 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:81:39:0,81,1156 +20 10090514 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:38:79:38:0,79,1175 +20 10090515 . C . . END=10090516 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:39:0,111,1665 +20 10090517 . A . . END=10090524 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:80:38:0,80,1130 +20 10090525 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:55:42:0,55,1127 +20 10090526 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:89:43:0,89,1263 +20 10090527 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:43:95:43:0,95,1298 +20 10090528 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:77:42:0,77,1199 +20 10090529 . G . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:92:42:0,92,1248 +20 10090530 . C . . END=10090532 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:99:42:0,114,1710 +20 10090533 . A . . END=10090535 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:94:43:0,94,1291 +20 10090536 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:89:41:0,89,1245 +20 10090537 . C . . END=10090539 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:39:0,100,1317 +20 10090540 . A . . END=10090541 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:42:91:41:0,91,1185 +20 10090542 . T . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:44:86:44:0,86,1243 +20 10090543 . C . . END=10090547 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:40:0,105,1575 +20 10090548 . G . . END=10090549 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:93:39:0,93,1135 +20 10090550 . A . . END=10090557 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:99:37:0,100,1131 +20 10090558 . C . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:39:86:39:0,86,1099 +20 10090559 . C . . END=10090592 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:41:99:38:0,106,1142 +20 10090593 . A . . . GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:40:97:40:0,97,1225 +20 10090594 . C . . END=10090763 GT:DP:GQ:MIN_DP:PL ./.:75:99:61:0,120,1800 ./.:51:99:38:0,100,1169 +20 10090764 . A G, . . BaseQRankSum=-2.659e+00;ClippingRankSum=0.00;DP=109;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=392400,109;ReadPosRankSum=0.695 GT:AD:DP:GQ:PL:SB ./.:34,29,0:63:99:869,0,1207,972,1294,2265:12,22,14,15 ./.:0,45,0:45:99:1187,133,0,1187,133,1187:0,0,25,20 +20 10090765 . A . . END=10090885 GT:DP:GQ:MIN_DP:PL ./.:75:99:65:0,120,1800 ./.:52:99:45:0,116,1415 +20 10090886 . G A, . . BaseQRankSum=1.03;ClippingRankSum=0.00;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=201600,56;ReadPosRankSum=1.80 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:75:99:65:0,120,1800,120,1800,1800 ./.:5,51,0:56:48:.:1467,48,0,1481,152,1585:2,3,27,24 +20 10090887 . A . . END=10090969 GT:DP:GQ:MIN_DP:PL ./.:75:99:65:0,120,1800 ./.:53:99:44:0,113,1448 +20 10090970 . T C, . . BaseQRankSum=-4.840e-01;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=1.51;RAW_MQandDP=247538,70;ReadPosRankSum=0.429 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,36,0:69:99:.:1286,0,1092,1384,1201,2585:20,13,20,16 ./.:.:53:99:44:0,113,1448,113,1448,1448 +20 10090971 . C . . END=10091213 GT:DP:GQ:MIN_DP:PL ./.:61:99:49:0,120,1800 ./.:53:99:44:0,113,1448 +20 10091214 . C T, . . BaseQRankSum=0.361;ClippingRankSum=0.00;DP=114;ExcessHet=3.01;MQRankSum=-9.160e-01;RAW_MQandDP=249769,70;ReadPosRankSum=0.392 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:33,37,0:70:99:.:1278,0,1110,1377,1222,2599:11,22,13,24 ./.:.:53:99:44:0,113,1448,113,1448,1448 +20 10091215 . C . . END=10091219 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:53:99:44:0,113,1448 +20 10091220 . A G, . . DP=91;ExcessHet=3.01;RAW_MQandDP=162000,45 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:69:99:46:0,120,1800,120,1800,1800 ./.:0,44,0:44:99:.:1235,130,0,1235,130,1235:0,0,20,24 +20 10091221 . T . . END=10091324 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:99:43:0,101,1302 +20 10091325 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:89:43:0,89,1252 +20 10091326 . G . . END=10091363 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1114 +20 10091364 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:87:40:0,87,1215 +20 10091365 . G . . END=10091537 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:99:38:0,105,1111 +20 10091538 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:92:40:0,92,1048 +20 10091539 . C . . END=10091564 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,99,1173 +20 10091565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:78:39:0,78,1132 +20 10091566 . G . . END=10091585 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,108,1620 +20 10091586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:97:39:0,97,1147 +20 10091587 . A . . END=10091617 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1141 +20 10091618 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:94:37:0,94,1159 +20 10091619 . C . . END=10091624 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,105,1163 +20 10091625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:98:38:0,98,1183 +20 10091626 . T . . END=10091662 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:36:0,99,1188 +20 10091663 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:80:38:0,80,1111 +20 10091664 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:41:0,117,1755 +20 10091665 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:90:41:0,90,1210 +20 10091666 . A . . END=10091744 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:35:0,105,1152 +20 10091745 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:79:35:0,79,1053 +20 10091746 . G . . END=10091797 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:42:99:33:0,99,1031 +20 10091798 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:85:40:0,85,1196 +20 10091799 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:40:0,114,1710 +20 10091800 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:97:40:0,97,1237 +20 10091801 . A . . END=10091820 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:39:0,105,1180 +20 10091821 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1242 +20 10091822 . A . . END=10091835 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,99,1485 +20 10091836 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1175 +20 10091837 . T . . END=10091838 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:38:0,99,1485 +20 10091839 . A . . END=10091843 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:93:37:0,93,1111 +20 10091844 . A . . END=10091861 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:36:99:34:0,99,1028 +20 10091862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:36:94:36:0,94,1028 +20 10091863 . C . . END=10091868 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,105,1138 +20 10091869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:97:38:0,97,1074 +20 10091870 . C . . END=10091907 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:99:40:0,99,1221 +20 10091908 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:98:47:0,98,1355 +20 10091909 . T . . END=10091931 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:41:0,103,1263 +20 10091932 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:42:81:42:0,81,1185 +20 10091933 . T . . END=10092027 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:40:0,114,1239 +20 10092028 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:97:41:0,97,1239 +20 10092029 . C . . END=10092101 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:41:0,102,1213 +20 10092102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:47:83:47:0,83,1345 +20 10092103 . G . . END=10092130 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:44:99:40:0,108,1288 +20 10092131 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:93:40:0,93,1128 +20 10092132 . C . . END=10092160 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:37:0,100,1126 +20 10092161 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:89:41:0,89,1165 +20 10092162 . G . . END=10092165 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:39:0,108,1195 +20 10092166 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:91:40:0,91,1151 +20 10092167 . T . . END=10092179 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:99:38:0,101,1084 +20 10092180 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:40:89:40:0,89,1148 +20 10092181 . T . . END=10092194 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:34:0,99,1485 +20 10092195 . T . . END=10092196 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:96:36:0,96,1440 +20 10092197 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:38:0,99,1485 +20 10092198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:90:37:0,90,1072 +20 10092199 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:37:0,99,1485 +20 10092200 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:90:37:0,90,1063 +20 10092201 . C . . END=10092202 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:37:99:36:0,99,1485 +20 10092203 . C . . END=10092209 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:34:96:32:0,96,983 +20 10092210 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:99:35:0,99,1485 +20 10092211 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:35:96:35:0,96,1440 +20 10092212 . A . . END=10092216 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:37:0,103,1087 +20 10092217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:88:38:0,88,1143 +20 10092218 . T . . END=10092238 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:99:37:0,99,1113 +20 10092239 . A . . END=10092241 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:96:38:0,96,1440 +20 10092242 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:77:39:0,77,1093 +20 10092243 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:96:39:0,96,1440 +20 10092244 . C . . END=10092247 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:39:0,105,1157 +20 10092248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:98:39:0,98,1127 +20 10092249 . A . . END=10092260 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:38:99:36:0,103,1121 +20 10092261 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:39:94:39:0,94,1166 +20 10092262 . A . . END=10092288 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:41:99:38:0,102,1110 +20 10092289 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:43:97:43:0,97,1263 +20 10092290 . T . . END=10092414 GT:DP:GQ:MIN_DP:PL ./.:69:99:46:0,120,1800 ./.:54:99:39:0,108,1239 +20 10092415 . A G, . . BaseQRankSum=-6.731e+00;ClippingRankSum=0.00;DP=141;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=367200,102;ReadPosRankSum=-7.000e-02 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:52,49,0:101:99:.:1664,0,1902,1820,2049,3870:27,25,24,25 ./.:.:54:99:39:0,108,1239,108,1239,1239 +20 10092416 . G . . END=10092641 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:54:99:39:0,108,1239 +20 10092642 . T C, . . DP=111;ExcessHet=3.01;RAW_MQandDP=183600,51 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:80:99:60:0,120,1800,120,1800,1800 ./.:0,51,0:51:99:.:1428,151,0,1428,151,1428:0,0,26,25 +20 10092643 . G . . END=10092926 GT:DP:GQ:MIN_DP:PL ./.:80:99:60:0,120,1800 ./.:57:99:40:0,108,1608 +20 10092927 . G T, . . BaseQRankSum=-2.507e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=-3.009e+00;RAW_MQandDP=257282,73;ReadPosRankSum=-4.416e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:59,13,0:72:99:.:135,0,1864,310,1901,2211:43,16,0,13 ./.:.:57:99:40:0,108,1608,108,1608,1608 +20 10092928 . T . . END=10093049 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:57:99:40:0,108,1608 +20 10093050 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:40:91:40:0,91,1217 +20 10093051 . C . . END=10093108 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:40:99:35:0,99,1143 +20 10093109 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:35:79:35:0,79,1099 +20 10093110 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:35:99:35:0,102,1530 +20 10093111 . T . . END=10093123 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:35:90:32:0,90,1075 +20 10093124 . C . . END=10093125 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:32:87:32:0,87,1305 +20 10093126 . C . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:33:90:33:0,90,1350 +20 10093127 . A . . END=10093128 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:33:84:33:0,84,1260 +20 10093129 . T . . END=10093132 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:35:90:34:0,90,1079 +20 10093133 . T . . END=10093138 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:36:99:34:0,99,1485 +20 10093139 . A . . END=10093144 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:35:93:34:0,93,1395 +20 10093145 . A . . END=10093229 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:43:99:37:0,99,1099 +20 10093230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:45:86:45:0,86,1332 +20 10093231 . C . . END=10093530 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:49:99:41:0,102,1306 +20 10093531 . C . . END=10093535 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:42:90:40:0,90,1350 +20 10093536 . C . . END=10093538 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:41:81:41:0,81,1215 +20 10093539 . A . . END=10093542 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:40:72:39:0,72,1080 +20 10093543 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:41:66:41:0,66,990 +20 10093544 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:38:57:38:0,57,855 +20 10093545 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:40:48:40:0,48,720 +20 10093546 . A . . END=10093547 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:39:45:38:0,45,675 +20 10093548 . G . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:39:48:39:0,48,720 +20 10093549 . A . . END=10093550 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:38:45:37:0,45,675 +20 10093551 . G . . END=10093552 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:39:39:38:0,39,585 +20 10093553 . G . . END=10093557 GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:37:24:37:0,24,360 +20 10093558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:79:99:57:0,111,1665 ./.:37:21:37:0,21,315 +20 10093559 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:90:60:0,90,1350 ./.:37:18:37:0,18,270 +20 10093560 . T . . END=10093562 GT:DP:GQ:MIN_DP:PL ./.:62:90:60:0,90,1350 ./.:37:15:36:0,15,225 +20 10093563 . G . . END=10093565 GT:DP:GQ:MIN_DP:PL ./.:61:84:60:0,84,1260 ./.:37:18:37:0,18,270 +20 10093566 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:84:60:0,84,1260 ./.:38:12:38:0,12,180 +20 10093567 . G . . . GT:DP:GQ:MIN_DP:PL ./.:59:75:59:0,75,1125 ./.:37:9:37:0,9,135 +20 10093568 . GTT GTTTT,G,GT,GTTT, . . BaseQRankSum=0.426;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.410;RAW_MQandDP=305661,87;ReadPosRankSum=0.987 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:17,0,4,17,4,0:42:99:.:.:364,431,885,329,838,1122,0,449,430,386,377,780,710,293,909,431,885,838,449,780,885:7,10,10,15 ./.:0,24,0,0,0,0:24:75:0|1:10093568_G_GTT:894,75,0,894,75,894,894,75,894,894,894,75,894,894,894,894,75,894,894,894,894:0,0,14,10 +20 10093569 . T *, . . DP=96 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:17,17,0:42:99:.:364,0,386,431,449,885:7,10,10,15 ./.:.:37:0:37:0,0,0,0,0,0 +20 10093570 . T *, . . DP=96 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:17,17,0:42:99:.:364,0,386,431,449,885:7,10,10,15 ./.:.:37:87:37:0,87,1305,87,1305,1305 +20 10093571 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:59:57:0,59,2043 ./.:37:87:37:0,87,1305 +20 10093572 . T . . END=10093573 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:87:37:0,87,1305 +20 10093574 . T . . END=10093579 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:72:34:0,72,1080 +20 10093580 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:54:34:0,54,993 +20 10093581 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:33:14:33:0,14,864 +20 10093582 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:33:47:33:0,47,848 +20 10093583 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:40:34:0,40,920 +20 10093584 . T G, . . BaseQRankSum=-2.073e+00;ClippingRankSum=0.00;DP=75;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=86400,24;ReadPosRankSum=1.05 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:62:99:51:.:.:0,99,1485,99,1485,1485 ./.:20,4,0:24:2:.:0|1:10093568_G_GTT:2,0,468,60,479,540:8,12,4,0 +20 10093585 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:72:35:0,72,1042 +20 10093586 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:84:32:0,84,1260 +20 10093587 . G . . END=10093589 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:75:30:0,75,904 +20 10093590 . T . . END=10093591 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:83:33:0,83,818 +20 10093592 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:57:31:0,57,762 +20 10093593 . T . . END=10093595 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:87:32:0,87,1305 +20 10093596 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:30:56:30:0,56,745 +20 10093597 . T . . END=10093599 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:84:32:0,84,1260 +20 10093600 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:90:34:0,90,1350 +20 10093601 . G . . END=10093602 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:35:82:33:0,82,927 +20 10093603 . T . . END=10093605 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:93:37:0,93,1395 +20 10093606 . G . . END=10093610 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:84:34:0,84,884 +20 10093611 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:51:37:0,51,947 +20 10093612 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:39:84:39:0,84,1260 +20 10093613 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:31:50:31:0,50,780 +20 10093614 . T . . END=10093623 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:81:30:0,81,1215 +20 10093624 . G . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:90:32:0,90,1350 +20 10093625 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:32:79:32:0,79,941 +20 10093626 . G . . END=10093627 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:96:34:0,96,1440 +20 10093628 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:99:34:0,99,1485 +20 10093629 . T . . END=10093631 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:34:96:34:0,96,1071 +20 10093632 . C . . END=10093655 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:99:36:0,102,1110 +20 10093656 . T . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:95:37:0,95,1117 +20 10093657 . G . . END=10093744 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:45:99:35:0,103,1102 +20 10093745 . C . . END=10093746 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:42:96:42:0,96,1440 +20 10093747 . C . . END=10093748 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:41:99:39:0,99,1485 +20 10093749 . C . . END=10093751 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:41:96:39:0,96,1440 +20 10093752 . C . . END=10093753 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:40:99:39:0,102,1530 +20 10093754 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:96:38:0,96,1440 +20 10093755 . C . . END=10093829 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:47:99:38:0,102,1359 +20 10093830 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:42:93:42:0,93,1160 +20 10093831 . T . . END=10093839 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:44:99:42:0,115,1238 +20 10093840 . A . . END=10093841 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:45:95:45:0,95,1260 +20 10093842 . T . . END=10093915 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:47:99:38:0,101,1151 +20 10093916 . A . . END=10093917 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:90:36:0,90,1050 +20 10093918 . A . . END=10093919 GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:38:99:38:0,102,1530 +20 10093920 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:83:37:0,83,1060 +20 10093921 . A . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:37:99:37:0,102,1530 +20 10093922 . C . . . GT:DP:GQ:MIN_DP:PL ./.:62:99:51:0,99,1485 ./.:39:91:37:0,91,1230 +20 10093923 . T A, . . BaseQRankSum=-6.670e-01;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=0.358;RAW_MQandDP=234704,67;ReadPosRankSum=-2.256e+00 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:35,32,0:67:99:.:1104,0,1257,1209,1353,2563:18,17,15,17 ./.:.:39:91:37:0,91,1230,91,1230,1230 +20 10093924 . G . . END=10093925 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:40:0,99,1485 +20 10093926 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:39:96:39:0,96,1440 +20 10093927 . C . . END=10093930 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10093931 . C . . END=10093932 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:96:36:0,96,1440 +20 10093933 . T . . END=10093934 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:36:0,99,1485 +20 10093935 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:56:35:0,56,936 +20 10093936 . A . . END=10093938 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:93:34:0,93,1395 +20 10093939 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:87:34:0,87,1019 +20 10093940 . T . . END=10093947 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:93:32:0,93,1395 +20 10093948 . C . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:31:62:31:0,62,944 +20 10093949 . T . . END=10093953 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:32:93:31:0,93,1005 +20 10093954 . G . . END=10093970 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:33:0,99,1012 +20 10093971 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:84:40:0,84,1122 +20 10093972 . C . . END=10093975 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:41:99:40:0,111,1665 +20 10093976 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:91:40:0,91,1212 +20 10093977 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:82:42:0,82,1199 +20 10093978 . G . . END=10093982 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,108,1620 +20 10093983 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:90:40:0,90,1277 +20 10093984 . G . . END=10093996 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,105,1195 +20 10093997 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:98:40:0,98,1225 +20 10093998 . A . . END=10094041 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:41:99:38:0,104,1218 +20 10094042 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:97:38:0,97,1203 +20 10094043 . T . . END=10094054 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:99:36:0,105,1185 +20 10094055 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:92:36:0,92,1108 +20 10094056 . T . . END=10094059 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:99:37:0,99,1485 +20 10094060 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:37:96:37:0,96,1440 +20 10094061 . A . . END=10094066 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:38:99:38:0,99,1485 +20 10094067 . T . . END=10094072 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:35:96:34:0,96,1440 +20 10094073 . A . . END=10094079 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:99:34:0,99,1075 +20 10094080 . T . . END=10094082 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:34:96:34:0,96,1440 +20 10094083 . T . . END=10094084 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:99:35:0,99,1485 +20 10094085 . G . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:36:91:36:0,91,1076 +20 10094086 . T . . END=10094101 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:40:99:38:0,99,1153 +20 10094102 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:76:42:0,76,1168 +20 10094103 . C . . END=10094137 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:44:99:40:0,101,1217 +20 10094138 . A . . . GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:42:92:42:0,92,1249 +20 10094139 . C . . END=10094250 GT:DP:GQ:MIN_DP:PL ./.:66:99:53:0,120,1800 ./.:49:99:37:0,100,1165 +20 10094251 . T A, . . BaseQRankSum=0.251;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=226800,63;ReadPosRankSum=1.73 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:26,36,0:62:99:.:1299,0,781,1376,889,2265:10,16,23,13 ./.:.:49:99:37:0,100,1165,100,1165,1165 +20 10094252 . C . . END=10094403 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:49:99:37:0,100,1165 +20 10094404 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:98:38:0,98,1181 +20 10094405 . A . . END=10094408 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:36:0,100,1117 +20 10094409 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:93:36:0,93,1121 +20 10094410 . A . . END=10094413 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,99,1485 +20 10094414 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:78:36:0,78,1064 +20 10094415 . A . . END=10094419 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,99,1485 +20 10094420 . G . . END=10094422 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:94:35:0,94,1077 +20 10094423 . A . . END=10094429 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:36:0,99,1485 +20 10094430 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:82:37:0,82,1102 +20 10094431 . G . . END=10094442 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1485 +20 10094443 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:96:35:0,96,1440 +20 10094444 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:88:36:0,88,1099 +20 10094445 . A . . END=10094449 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:93:35:0,93,1083 +20 10094450 . A . . END=10094452 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:99:34:0,99,1485 +20 10094453 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:74:35:0,74,965 +20 10094454 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:99:35:0,99,1485 +20 10094455 . C . . END=10094462 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:35:90:34:0,90,1088 +20 10094463 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:34:79:34:0,79,1036 +20 10094464 . C . . END=10094466 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:90:35:0,90,1068 +20 10094467 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:88:37:0,88,1097 +20 10094468 . A . . END=10094472 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:34:0,99,1485 +20 10094473 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:34:91:34:0,91,1013 +20 10094474 . C . . END=10094486 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1485 +20 10094487 . C . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:92:36:0,92,1082 +20 10094488 . T . . END=10094493 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:99:37:0,99,1485 +20 10094494 . C . . END=10094498 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:95:36:0,95,1093 +20 10094499 . C . . END=10094501 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:37:99:35:0,99,1152 +20 10094502 . T . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:93:36:0,93,1099 +20 10094503 . G . . END=10094505 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:36:99:36:0,105,1138 +20 10094506 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:87:38:0,87,1147 +20 10094507 . G . . END=10094512 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:39:99:38:0,111,1665 +20 10094513 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:38:93:38:0,93,1141 +20 10094514 . C . . END=10094581 GT:DP:GQ:MIN_DP:PL ./.:68:99:46:0,117,1755 ./.:44:99:37:0,99,1130 +20 10094582 . A G, . . BaseQRankSum=-1.388e+00;ClippingRankSum=0.00;DP=109;ExcessHet=3.01;MQRankSum=1.27;RAW_MQandDP=254210,72;ReadPosRankSum=-5.270e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:39,30,0:69:99:.:952,0,1350,1070,1440,2510:20,19,16,14 ./.:.:44:99:37:0,99,1130,99,1130,1130 +20 10094583 . T . . END=10094760 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:44:99:37:0,99,1130 +20 10094761 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:52:93:52:0,93,1450 +20 10094762 . G . . END=10094769 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:53:99:51:0,120,1800 +20 10094770 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:53:87:53:0,87,1503 +20 10094771 . A . . END=10094773 GT:DP:GQ:MIN_DP:PL ./.:78:99:67:0,120,1800 ./.:51:99:49:0,120,1800 +20 10094774 . C T, . . BaseQRankSum=-7.840e-01;ClippingRankSum=0.00;DP=126;ExcessHet=3.01;MQRankSum=0.962;RAW_MQandDP=274441,77;ReadPosRankSum=0.494 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,35,0:75:99:.:1065,0,1282,1185,1385,2570:24,16,21,14 ./.:.:49:97:49:0,97,1393,97,1393,1393 +20 10094775 . A . . END=10094792 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:49:99:45:0,120,1800 +20 10094793 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:43:95:43:0,95,1249 +20 10094794 . T . . END=10094898 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:47:99:43:0,114,1358 +20 10094899 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:49:97:49:0,97,1388 +20 10094900 . G . . END=10094973 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:48:99:44:0,104,1371 +20 10094974 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:96:45:0,96,1282 +20 10094975 . A . . END=10094986 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:99:42:0,117,1755 +20 10094987 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:45:97:45:0,97,1265 +20 10094988 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:99:44:0,114,1710 +20 10094989 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:91:44:0,91,1236 +20 10094990 . T . . END=10094994 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:44:99:42:0,108,1620 +20 10094995 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:42:87:42:0,87,1169 +20 10094996 . C . . END=10095004 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:99:38:0,99,1108 +20 10095005 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:92:41:0,92,1160 +20 10095006 . A . . END=10095069 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:99:35:0,99,1096 +20 10095070 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:93:35:0,93,1066 +20 10095071 . A . . END=10095080 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:35:0,100,1081 +20 10095081 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:77:36:0,77,1108 +20 10095082 . A . . END=10095098 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:34:0,99,1089 +20 10095099 . C . . END=10095101 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:91:35:0,91,1033 +20 10095102 . A . . END=10095117 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:35:0,99,1074 +20 10095118 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:96:37:0,96,1067 +20 10095119 . A . . END=10095121 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:35:0,99,1485 +20 10095122 . T . . END=10095127 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:93:34:0,93,1395 +20 10095128 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:87:33:0,87,986 +20 10095129 . A . . END=10095132 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:93:33:0,93,1395 +20 10095133 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:81:33:0,81,937 +20 10095134 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095135 . T . . END=10095161 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:34:0,99,1485 +20 10095162 . A . . END=10095172 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:90:32:0,90,989 +20 10095173 . C . . END=10095182 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:33:0,99,1023 +20 10095183 . T . . END=10095184 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:96:37:0,96,1440 +20 10095185 . T . . END=10095186 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:38:99:38:0,99,1485 +20 10095187 . G . . END=10095196 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:90:32:0,90,1124 +20 10095197 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:87:33:0,87,1305 +20 10095198 . T . . END=10095200 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:90:33:0,90,1350 +20 10095201 . C . . END=10095203 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095204 . A . . END=10095205 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:93:36:0,93,1395 +20 10095206 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:75:36:0,75,1081 +20 10095207 . T . . END=10095209 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:96:35:0,96,1093 +20 10095210 . T . . END=10095213 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:34:0,99,1485 +20 10095214 . T . . END=10095236 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:93:32:0,93,1002 +20 10095237 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095238 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:94:35:0,94,1083 +20 10095239 . T . . END=10095240 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095241 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:88:34:0,88,1071 +20 10095242 . A . . END=10095245 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095246 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:77:34:0,77,1045 +20 10095247 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:96:32:0,96,992 +20 10095248 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:99:34:0,102,1066 +20 10095249 . A . . END=10095250 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095251 . G . . END=10095260 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:99:34:0,99,1112 +20 10095261 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:35:93:35:0,93,1106 +20 10095262 . T . . END=10095278 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:36:99:34:0,99,1051 +20 10095279 . A . . END=10095285 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:90:35:0,90,1350 +20 10095286 . G . . END=10095288 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:84:33:0,84,1260 +20 10095289 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:75:31:0,75,925 +20 10095290 . T . . END=10095299 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:81:29:0,81,1215 +20 10095300 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:64:29:0,64,867 +20 10095301 . G . . END=10095302 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:29:0,81,1215 +20 10095303 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:75:30:0,75,910 +20 10095304 . A . . END=10095305 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:87:30:0,87,1305 +20 10095306 . T . . END=10095307 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:78:29:0,78,1170 +20 10095308 . A . . END=10095310 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:31:80:31:0,80,923 +20 10095311 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:78:30:0,78,864 +20 10095312 . C . . END=10095318 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:28:0,81,871 +20 10095319 . T . . END=10095327 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:75:29:0,75,1125 +20 10095328 . G . . END=10095329 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:81:28:0,81,1215 +20 10095330 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:78:29:0,78,1170 +20 10095331 . T . . END=10095335 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:81:29:0,81,1215 +20 10095336 . A . . END=10095341 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:72:26:0,72,820 +20 10095342 . G . . END=10095344 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:69:27:0,69,1035 +20 10095345 . C . . END=10095350 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:72:28:0,72,1080 +20 10095351 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:81:30:0,81,1215 +20 10095352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:70:28:0,70,822 +20 10095353 . A . . END=10095362 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:28:81:27:0,81,840 +20 10095363 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:68:29:0,68,841 +20 10095364 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:29:87:29:0,87,892 +20 10095365 . C . . END=10095366 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:90:30:0,90,920 +20 10095367 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:30:65:30:0,65,908 +20 10095368 . T . . END=10095372 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:93:31:0,93,941 +20 10095373 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:85:32:0,85,979 +20 10095374 . G . . END=10095376 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:90:32:0,90,971 +20 10095377 . C . . END=10095381 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:80:32:0,80,947 +20 10095382 . G . . END=10095385 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:90:32:0,90,1350 +20 10095386 . G . . END=10095387 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:32:84:31:0,84,1260 +20 10095388 . G . . END=10095395 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:33:72:30:0,72,1080 +20 10095396 . C . . END=10095412 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:34:63:32:0,63,945 +20 10095413 . T . . END=10095415 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:54:37:0,54,810 +20 10095416 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:37:51:37:0,51,765 +20 10095417 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:48:40:0,48,720 +20 10095418 . T . . END=10095419 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:45:39:0,45,675 +20 10095420 . A . . END=10095421 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:39:40:0,39,585 +20 10095422 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:42:36:42:0,36,540 +20 10095423 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:43:33:43:0,33,495 +20 10095424 . A . . END=10095426 GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:30:40:0,30,450 +20 10095427 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:27:41:0,27,405 +20 10095428 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:24:41:0,24,360 +20 10095429 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:41:21:41:0,21,315 +20 10095430 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:40:18:40:0,18,270 +20 10095431 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:63:0,120,1800 ./.:39:15:39:0,15,225 +20 10095432 . GTGATGATGA GTGA,G, . . BaseQRankSum=1.27;ClippingRankSum=0.00;DP=112;ExcessHet=3.01;MQRankSum=-4.431e+00;RAW_MQandDP=353748,112;ReadPosRankSum=0.660 GT:AD:DP:GQ:PL:SB ./.:27,0,23,0:50:99:877,959,3140,0,2181,2108,959,3140,2181,3140:16,11,12,11 ./.:0,27,0,0:27:82:1217,82,0,1217,82,1217,1217,82,1217,1217:0,0,13,14 +20 10095433 . T *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095434 . G *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095435 . A *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095436 . T *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095437 . G *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095438 . A *, . . DP=112 GT:AD:DP:GQ:PL:SB ./.:27,23,0:50:99:877,0,2108,959,2181,3140:16,11,12,11 ./.:0,27,0:27:82:1217,82,0,1217,82,1217:0,0,13,14 +20 10095439 . T *, . . DP=113 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:36:0:36:0,0,0,0,0,0 +20 10095440 . G *, . . DP=109 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:35:90:32:0,90,1021,90,1021,1021 +20 10095441 . A *, . . DP=109 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,23,0:50:99:.:877,0,2108,959,2181,3140:16,11,12,11 ./.:.:35:90:32:0,90,1021,90,1021,1021 +20 10095442 . T . . . GT:DP:GQ:MIN_DP:PL ./.:71:0:71:0,0,1080 ./.:35:90:32:0,90,1021 +20 10095443 . G . . END=10095468 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:90:32:0,90,1021 +20 10095469 . T . . END=10095472 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:33:99:33:0,99,1037 +20 10095473 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:33:54:33:0,54,948 +20 10095474 . A . . END=10095475 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:33:67:33:0,67,1016 +20 10095476 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:33:71:33:0,71,939 +20 10095477 . A . . END=10095478 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:96:32:0,96,1056 +20 10095479 . A . . END=10095499 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:99:37:0,100,1117 +20 10095500 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:98:39:0,98,1096 +20 10095501 . T . . END=10095502 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:99:39:0,101,1151 +20 10095503 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:38:98:38:0,98,1135 +20 10095504 . G . . END=10095508 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:99:36:0,102,1530 +20 10095509 . A . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:95:37:0,95,1111 +20 10095510 . C . . END=10095512 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:99:37:0,108,1620 +20 10095513 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:95:37:0,95,1123 +20 10095514 . G . . END=10095521 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:38:99:37:0,105,1575 +20 10095522 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:94:39:0,94,1135 +20 10095523 . G . . END=10095532 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:99:37:0,108,1620 +20 10095533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:88:39:0,88,1137 +20 10095534 . A . . END=10095535 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:99:39:0,108,1620 +20 10095536 . T . . END=10095537 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:84:39:0,84,1113 +20 10095538 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:38:96:38:0,96,1120 +20 10095539 . C . . END=10095541 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:38:99:38:0,99,1485 +20 10095542 . A . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:36:89:36:0,89,1072 +20 10095543 . T . . END=10095560 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:40:99:36:0,102,1107 +20 10095561 . A . . END=10095564 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:40:96:40:0,96,1440 +20 10095565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:40:99:40:0,99,1485 +20 10095566 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:40:92:40:0,92,1140 +20 10095567 . A . . END=10095568 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:99:38:0,102,1530 +20 10095569 . A . . END=10095573 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:96:37:0,96,1440 +20 10095574 . C . . END=10095575 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:36:99:36:0,99,1485 +20 10095576 . G . . END=10095580 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:36:93:33:0,93,1395 +20 10095581 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:34:66:34:0,66,998 +20 10095582 . A . . END=10095587 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:34:90:30:0,90,966 +20 10095588 . A . . END=10095591 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:84:35:0,84,1095 +20 10095593 . C . . END=10095597 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:36:99:36:0,105,1575 +20 10095598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:94:37:0,94,1128 +20 10095599 . A . . END=10095636 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:40:99:36:0,100,1121 +20 10095637 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:79:35:0,79,1059 +20 10095638 . A . . END=10095639 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:99:35:0,102,1530 +20 10095640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:88:35:0,88,1069 +20 10095641 . A . . END=10095647 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:99:34:0,99,1485 +20 10095648 . T . . END=10095653 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:90:34:0,90,1072 +20 10095654 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:34:99:34:0,99,1485 +20 10095655 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:96:35:0,96,1440 +20 10095656 . T . . END=10095658 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:99:34:0,100,1111 +20 10095659 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:35:96:35:0,96,1440 +20 10095660 . A . . END=10095661 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095662 . G . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:36:81:36:0,81,1111 +20 10095663 . C . . END=10095668 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:38:99:37:0,99,1485 +20 10095669 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:40:96:40:0,96,1241 +20 10095670 . T . . END=10095692 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:99:37:0,101,1144 +20 10095693 . A . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:39:84:39:0,84,1170 +20 10095694 . T . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:38:99:38:0,102,1530 +20 10095695 . A . . END=10095696 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:92:36:0,92,1167 +20 10095697 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:37:86:37:0,86,1043 +20 10095698 . C . . END=10095701 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:36:90:35:0,90,1350 +20 10095702 . A . . END=10095711 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:33:84:30:0,84,1260 +20 10095712 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:30:58:30:0,58,881 +20 10095713 . A . . END=10095727 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:31:81:29:0,81,1215 +20 10095728 . C . . . GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:31:78:31:0,78,1170 +20 10095729 . T . . END=10095735 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:32:81:31:0,81,1215 +20 10095736 . C . . END=10095740 GT:DP:GQ:MIN_DP:PL ./.:81:99:64:0,120,1800 ./.:33:90:32:0,90,1350 +20 10095741 . A G, . . BaseQRankSum=-5.340e-01;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=-2.313e+00;RAW_MQandDP=237128,72;ReadPosRankSum=-3.260e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:36,34,0:70:99:.:1104,0,1233,1213,1335,2547:14,22,18,16 ./.:.:34:67:34:0,67,972,67,972,972 +20 10095742 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:33:96:33:0,96,1440 +20 10095743 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095744 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:34:96:34:0,96,1440 +20 10095745 . T . . END=10095746 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:99:35:0,99,1485 +20 10095747 . T . . END=10095749 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:91:35:0,91,1059 +20 10095750 . G . . END=10095761 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:37:99:36:0,99,1485 +20 10095762 . C . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:37:92:37:0,92,1021 +20 10095763 . G . . END=10095770 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:38:99:36:0,100,1099 +20 10095771 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:35:66:35:0,66,1071 +20 10095772 . A . . END=10096152 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:48:99:36:0,101,1104 +20 10096153 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:96:39:0,96,1440 +20 10096154 . T . . END=10096163 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:40:99:37:0,99,1485 +20 10096164 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:36:92:36:0,92,1081 +20 10096165 . G . . END=10096189 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:99:36:0,99,1122 +20 10096190 . T . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:98:42:0,98,1267 +20 10096191 . C . . END=10096212 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:37:0,102,1255 +20 10096213 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:39:80:39:0,80,1140 +20 10096214 . T . . END=10096236 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:37:0,99,1223 +20 10096237 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:40:86:40:0,86,1175 +20 10096238 . T . . END=10096242 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:41:99:40:0,120,1221 +20 10096243 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:93:42:0,93,1181 +20 10096244 . G . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:99:42:0,111,1228 +20 10096245 . A . . . GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:42:95:42:0,95,1235 +20 10096246 . A . . END=10096292 GT:DP:GQ:MIN_DP:PL ./.:73:99:63:0,120,1800 ./.:47:99:40:0,108,1181 +20 10096293 . C T, . . BaseQRankSum=4.66;ClippingRankSum=0.00;DP=116;ExcessHet=3.01;MQRankSum=1.40;RAW_MQandDP=260861,76;ReadPosRankSum=0.012 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:37,38,0:75:99:.:1384,0,1258,1495,1372,2867:21,16,21,17 ./.:.:47:99:40:0,108,1181,108,1181,1181 +20 10096294 . T . . END=10096317 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:47:99:40:0,108,1181 +20 10096318 . G . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:48:94:48:0,94,1351 +20 10096319 . C . . END=10096356 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:49:99:44:0,120,1800 +20 10096357 . A G, . . BaseQRankSum=0.964;ClippingRankSum=0.00;DP=101;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=158400,44;ReadPosRankSum=1.55 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:68:99:57:0,120,1800,120,1800,1800 ./.:1,41,0:42:94:.:1166,94,0,1169,121,1196:1,0,25,16 +20 10096358 . T . . END=10096455 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:48:99:43:0,104,1361 +20 10096456 . A . . . GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:52:98:52:0,98,1401 +20 10096457 . T . . END=10096595 GT:DP:GQ:MIN_DP:PL ./.:68:99:57:0,120,1800 ./.:60:99:43:0,99,1273 +20 10096596 . C T, . . BaseQRankSum=2.73;ClippingRankSum=0.00;DP=130;ExcessHet=3.01;MQRankSum=0.612;RAW_MQandDP=300461,87;ReadPosRankSum=0.166 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:40,47,0:87:99:.:1591,0,1273,1711,1414,3125:19,21,23,24 ./.:.:60:99:43:0,99,1273,99,1273,1273 +20 10096597 . T . . END=10096717 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:60:99:43:0,99,1273 +20 10096718 . C T, . . BaseQRankSum=-2.220e-01;ClippingRankSum=0.00;DP=128;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=190800,53;ReadPosRankSum=0.856 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:90:99:75:0,120,1800,120,1800,1800 ./.:49,2,0:51:99:.:0,107,1451,146,1456,1495:25,24,1,1 +20 10096719 . T . . END=10096732 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:61:99:55:0,120,1800 +20 10096733 . C T, . . BaseQRankSum=1.16;ClippingRankSum=0.00;DP=134;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=212400,59;ReadPosRankSum=-9.330e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:90:99:75:0,120,1800,120,1800,1800 ./.:1,56,0:57:99:.:1747,143,0,1750,168,1775:0,1,27,29 +20 10096734 . G . . END=10096767 GT:DP:GQ:MIN_DP:PL ./.:90:99:75:0,120,1800 ./.:60:99:57:0,120,1800 +20 10096768 . A C, . . BaseQRankSum=-2.764e+00;ClippingRankSum=0.00;DP=148;ExcessHet=3.01;MQRankSum=-1.609e+00;RAW_MQandDP=525823,148;ReadPosRankSum=0.541 GT:AD:DP:GQ:PL:SB ./.:42,49,0:91:99:1711,0,1452,1838,1600,3437:25,17,24,25 ./.:0,56,0:56:99:1785,168,0,1785,168,1785:0,0,26,30 +20 10096769 . A . . END=10096857 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:55:99:50:0,102,1530 +20 10096858 . C . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:54:96:54:0,96,1440 +20 10096859 . T . . END=10096861 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:54:87:53:0,87,1305 +20 10096862 . A . . END=10096874 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:55:63:47:0,63,945 +20 10096875 . A . . END=10096876 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:51:57:50:0,57,855 +20 10096877 . G . . END=10096878 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:51:48:50:0,48,720 +20 10096879 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:51:42:51:0,42,630 +20 10096880 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:50:39:50:0,39,585 +20 10096881 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:52:36:52:0,36,540 +20 10096882 . G . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:52:33:52:0,33,495 +20 10096883 . A . . END=10096885 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:53:27:48:0,27,405 +20 10096886 . T . . END=10096888 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:53:21:52:0,21,315 +20 10096889 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:52:18:52:0,18,270 +20 10096890 . C . . END=10096893 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:52:15:50:0,15,225 +20 10096894 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:50:12:50:0,12,180 +20 10096895 . A . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:50:9:50:0,9,135 +20 10096896 . T . . . GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:48:6:48:0,6,90 +20 10096897 . T . . END=10096898 GT:DP:GQ:MIN_DP:PL ./.:78:99:65:0,99,1485 ./.:47:0:47:0,0,0 +20 10096899 . G T, . . BaseQRankSum=2.76;ClippingRankSum=0.00;DP=120;ExcessHet=3.01;MQRankSum=-1.387e+00;RAW_MQandDP=428838,120;ReadPosRankSum=0.378 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:39,40,0:79:99:0|1:10096899_G_T:1643,0,1520,1764,1649,3413:19,20,12,28 ./.:0,41,0:41:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,14,27 +20 10096900 . G . . END=10096904 GT:DP:GQ:MIN_DP:PL ./.:83:99:79:0,108,1620 ./.:47:0:46:0,0,0 +20 10096905 . TA T, . . BaseQRankSum=-7.550e-01;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=-1.677e+00;RAW_MQandDP=436879,123;ReadPosRankSum=0.397 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 ./.:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096906 . A *, . . DP=123 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:40,43,0:83:99:0|1:10096899_G_T:1638,0,1623,1768,1752,3520:20,20,13,30 ./.:0,40,0:40:99:0|1:10096899_G_T:1835,123,0,1835,123,1835:0,0,13,27 +20 10096907 . A . . . GT:DP:GQ:MIN_DP:PL ./.:83:0:83:0,0,0 ./.:48:0:48:0,0,0 +20 10096908 . T . . END=10096924 GT:DP:GQ:MIN_DP:PL ./.:85:99:83:0,120,1800 ./.:47:99:45:0,112,1358 +20 10096925 . T C, . . BaseQRankSum=-4.687e+00;ClippingRankSum=0.00;DP=121;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=-6.140e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:85:99:83:0,120,1800,120,1800,1800 ./.:20,18,0:38:99:.:364,0,556,424,609,1033:6,14,7,11 +20 10096926 . G . . END=10096932 GT:DP:GQ:MIN_DP:PL ./.:85:99:83:0,120,1800 ./.:46:99:43:0,118,1289 +20 10096933 . G C, . . BaseQRankSum=-1.914e+00;ClippingRankSum=0.00;DP=123;ExcessHet=3.01;MQRankSum=-1.802e+00;RAW_MQandDP=435579,123;ReadPosRankSum=0.238 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:44,41,0:85:99:0|1:10096933_G_C:1540,0,1770,1684,1896,3580:28,16,13,28 ./.:0,38,0:38:99:0|1:10096933_G_C:1730,117,0,1730,117,1730:0,0,13,25 +20 10096934 . T . . END=10096957 GT:DP:GQ:MIN_DP:PL ./.:91:99:87:0,120,1800 ./.:48:99:43:0,116,1435 +20 10096958 . G A, . . BaseQRankSum=2.84;ClippingRankSum=0.00;DP=139;ExcessHet=3.01;MQRankSum=-1.701e+00;RAW_MQandDP=493179,139;ReadPosRankSum=-1.860e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:45,47,0:92:99:0|1:10096933_G_C:1795,0,1629,1929,1773,3702:27,18,16,31 ./.:0,47,0:47:99:0|1:10096933_G_C:1897,141,0,1897,141,1897:0,0,16,31 +20 10096959 . G . . END=10097023 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:54:99:40:0,99,1197 +20 10097024 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:41:96:41:0,96,1215 +20 10097025 . G . . END=10097039 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:42:99:40:0,104,1197 +20 10097040 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:90:40:0,90,1144 +20 10097041 . A . . END=10097042 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:99:40:0,108,1620 +20 10097043 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:38:80:38:0,80,1137 +20 10097044 . T . . END=10097061 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:39:99:38:0,99,1134 +20 10097062 . T . . END=10097066 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:40:93:40:0,93,1395 +20 10097067 . A . . END=10097068 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:41:87:41:0,87,1305 +20 10097069 . A . . END=10097074 GT:DP:GQ:MIN_DP:PL ./.:92:99:84:0,120,1800 ./.:43:90:42:0,90,1350 +20 10097075 . T G, . . BaseQRankSum=1.82;ClippingRankSum=0.00;DP=126;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=438028,126;ReadPosRankSum=1.53 GT:AD:DP:GQ:PL:SB ./.:44,48,0:92:99:1474,0,1482,1606,1626,3232:18,26,26,22 ./.:1,33,0:34:92:1056,92,0,1058,99,1065:0,1,16,17 +20 10097076 . A . . END=10097079 GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:41:81:40:0,81,1215 +20 10097080 . A . . END=10097085 GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:43:72:42:0,72,1080 +20 10097086 . A . . END=10097089 GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:42:60:41:0,60,900 +20 10097090 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:41:54:41:0,54,810 +20 10097091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:40:51:40:0,51,765 +20 10097092 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:39:42:39:0,42,630 +20 10097093 . G . . END=10097094 GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:39:39:38:0,39,585 +20 10097095 . T . . END=10097096 GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:40:33:40:0,33,495 +20 10097097 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:38:30:38:0,30,450 +20 10097098 . A . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:36:24:36:0,24,360 +20 10097099 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:39:18:39:0,18,270 +20 10097100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:92:99:79:0,99,1485 ./.:39:21:39:0,21,315 +20 10097101 . C CTTTT,CTTT, . . BaseQRankSum=-1.134e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=-2.428e+00;RAW_MQandDP=353094,104;ReadPosRankSum=1.11 GT:AD:DP:GQ:PL:SB ./.:34,4,26,0:64:99:1129,558,2012,0,1324,1306,982,2052,1430,2377:22,12,15,15 ./.:0,22,0,0:22:71:1008,71,0,1008,71,1009,1008,71,1009,1009:0,0,13,9 +20 10097102 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:0:77:0,0,200 ./.:36:0:36:0,0,0 +20 10097103 . T . . END=10097107 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:36:60:35:0,60,900 +20 10097108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:36:72:36:0,72,1080 +20 10097109 . T . . END=10097111 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:36:66:34:0,66,990 +20 10097112 . C T, . . BaseQRankSum=-1.189e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=108000,30;ReadPosRankSum=-8.330e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:70:99:60:0,99,1485,99,1485,1485 ./.:27,3,0:30:36:.:0,36,662,79,670,713:14,13,3,0 +20 10097113 . T . . END=10097115 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:35:72:35:0,72,1080 +20 10097116 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:34:0:34:0,0,794 +20 10097117 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:35:75:35:0,75,1125 +20 10097118 . G . . END=10097120 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:29:0:29:0,0,602 +20 10097121 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:27:46:27:0,46,767 +20 10097122 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:30:78:30:0,78,920 +20 10097123 . G . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:30:55:30:0,55,879 +20 10097124 . G . . END=10097133 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:29:81:27:0,81,816 +20 10097134 . C . . END=10097140 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:32:90:31:0,90,1350 +20 10097141 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:33:71:33:0,71,988 +20 10097142 . A . . END=10097144 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:32:93:31:0,93,960 +20 10097145 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:29:87:29:0,87,919 +20 10097146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:32:96:32:0,96,1009 +20 10097147 . G . . END=10097148 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:34:99:34:0,101,955 +20 10097149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:35:76:35:0,76,1005 +20 10097150 . G . . END=10097152 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:35:99:35:0,104,1001 +20 10097153 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:32:96:32:0,96,971 +20 10097154 . A . . END=10097177 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:40:99:34:0,102,1033 +20 10097178 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:39:96:39:0,96,1133 +20 10097179 . A . . END=10097356 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:45:99:39:0,100,1124 +20 10097357 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:41:92:41:0,92,1242 +20 10097358 . A . . END=10097416 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:41:99:38:0,99,1162 +20 10097417 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:38:96:38:0,96,1151 +20 10097418 . G . . END=10097421 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:37:99:34:0,99,1485 +20 10097422 . T . . END=10097428 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:35:90:33:0,90,1350 +20 10097429 . G . . END=10097432 GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:33:84:32:0,84,1260 +20 10097433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:30:64:30:0,64,876 +20 10097434 . C . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:30:78:30:0,78,1170 +20 10097435 . T . . . GT:DP:GQ:MIN_DP:PL ./.:70:99:60:0,99,1485 ./.:30:66:30:0,66,990 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C, . . BaseQRankSum=1.82;ClippingRankSum=0.00;DP=119;ExcessHet=3.01;MQRankSum=-6.464e+00;RAW_MQandDP=262143,89;ReadPosRankSum=-3.231e+00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:57,32,0:89:99:.:0|1:10097436_CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT_C:1092,0,2241,1263,2338,3601:23,34,11,21 ./.:.:30:66:30:.:.:0,66,990,66,990,990 +20 10097437 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTTCTTTCTTTCTTTCTTTCTTTCTTTC,T, . . BaseQRankSum=0.791;ClippingRankSum=0.00;DP=106;ExcessHet=3.01;MQRankSum=4.88;RAW_MQandDP=325330,106;ReadPosRankSum=2.93 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:32,23,0,0:55:99:1|0:10097436_CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT_C:834,0,1193,931,1263,2194,931,1263,2194,2194:11,21,5,18 ./.:0,0,21,0:21:67:.:.:928,928,928,67,67,0,928,928,67,928:0,0,6,15 +20 10097438 . T *, . . DP=106 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:32,23,0:55:99:1|0:10097436_CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT_C:834,0,1193,931,1263,2194:11,21,5,18 ./.:0,21,0:21:67:.:.:928,67,0,928,67,928:0,0,6,15 +20 10097439 . T *, . . DP=106 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:32,23,0:55:99:1|0:10097436_CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT_C:834,0,1193,931,1263,2194:11,21,5,18 ./.:0,21,0:21:67:.:.:928,67,0,928,67,928:0,0,6,15 +20 10097440 . T *, . . DP=106 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:32,23,0:55:99:1|0:10097436_CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT_C:834,0,1193,931,1263,2194:11,21,5,18 ./.:0,21,0:21:67:.:.:928,67,0,928,67,928:0,0,6,15 +20 10097441 . C *, . . DP=106 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:32,23,0:55:99:1|0:10097436_CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT_C:834,0,1193,931,1263,2194:11,21,5,18 ./.:0,21,0:21:67:.:.:928,67,0,928,67,928:0,0,6,15 +20 10097442 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:0:63:0,0,698,0,698,698 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097443 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:75:63:0,75,1125,75,1125,1125 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097444 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:75:63:0,75,1125,75,1125,1125 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097445 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:75:63:0,75,1125,75,1125,1125 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097446 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:81:63:0,81,1215,81,1215,1215 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097447 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:81:63:0,81,1215,81,1215,1215 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097448 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:81:63:0,81,1215,81,1215,1215 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097449 . C *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:81:63:0,81,1215,81,1215,1215 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097450 . T *, . . DP=93 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:81:63:0,81,1215,81,1215,1215 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097451 . T *, . . DP=91 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:90:61:0,90,1350,90,1350,1350 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097452 . T *, . . DP=91 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:90:61:0,90,1350,90,1350,1350 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097453 . C *, . . DP=92 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:71:62:0,71,2168,71,2168,2168 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097454 . T *, . . DP=92 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:71:62:0,71,2168,71,2168,2168 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097455 . T *, . . DP=92 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:63:71:62:0,71,2168,71,2168,2168 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097456 . T *, . . DP=91 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:0:61:0,0,1556,0,1556,1556 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097457 . C *, . . DP=91 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:0:61:0,0,1556,0,1556,1556 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097458 . T *, . . DP=91 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:64:0:61:0,0,1556,0,1556,1556 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097459 . T *, . . DP=90 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:60:21:60:0,21,2116,21,2116,2116 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097460 . T *, . . DP=91 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:24:61:0,24,2071,24,2071,2071 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097461 . C *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097462 . T *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097463 . T *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097464 . T *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097465 . C *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097466 . T *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097467 . T *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097468 . T *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097469 . C *, . . DP=88 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:61:0:58:0,0,1102,0,1102,1102 ./.:0,21,0:21:67:.:928,67,0,928,67,928:0,0,6,15 +20 10097470 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:0:58:0,0,1102 ./.:19:0:19:0,0,0 +20 10097471 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:0:58:0,0,1102 ./.:18:33:18:0,33,495 +20 10097472 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:0:58:0,0,1102 ./.:19:36:19:0,36,540 +20 10097473 . C . . . GT:DP:GQ:MIN_DP:PL ./.:61:0:58:0,0,1102 ./.:16:0:16:0,0,95 +20 10097474 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:0:58:0,0,1102 ./.:18:39:18:0,39,585 +20 10097475 . T . . . GT:DP:GQ:MIN_DP:PL ./.:61:0:58:0,0,1102 ./.:18:0:17:0,0,261 +20 10097476 . T . . . GT:DP:GQ:MIN_DP:PL ./.:66:11:66:0,11,2255 ./.:18:0:17:0,0,261 +20 10097477 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:16:42:16:0,42,630 +20 10097478 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:0:18:0,0,311 +20 10097479 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:42:20:0,42,630 +20 10097480 . T . . END=10097482 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:17:0:15:0,0,280 +20 10097483 . T . . END=10097484 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:45:19:0,45,531 +20 10097485 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:0:18:0,0,435 +20 10097486 . T . . END=10097487 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:54:20:0,54,625 +20 10097488 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:19:24:19:0,24,531 +20 10097489 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:22:18:0,22,509 +20 10097490 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:32:21:0,32,562 +20 10097491 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:21:29:21:0,29,589 +20 10097492 . T . . END=10097493 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:57:20:0,57,855 +20 10097494 . T . . END=10097495 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:20:60:20:0,60,609 +20 10097496 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:18:54:18:0,54,557 +20 10097497 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:19:28:19:0,28,490 +20 10097498 . C . . END=10097501 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:22:60:20:0,60,598 +20 10097502 . T . . END=10097503 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:72:25:0,72,1080 +20 10097504 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:66:26:0,66,762 +20 10097505 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:75:26:0,75,1125 +20 10097506 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:27:81:27:0,81,846 +20 10097507 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:26:78:26:0,78,831 +20 10097508 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:27:81:27:0,81,822 +20 10097509 . C . . END=10097512 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:25:72:24:0,72,687 +20 10097513 . G . . END=10097514 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:28:81:27:0,81,759 +20 10097515 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:78:30:0,78,854 +20 10097516 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,886 +20 10097517 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,863 +20 10097518 . T . . END=10097521 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:92:31:0,92,941 +20 10097522 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:77:32:0,77,955 +20 10097523 . G . . END=10097525 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,931 +20 10097526 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,881 +20 10097527 . A . . END=10097529 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:90:30:0,90,940 +20 10097530 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:75:33:0,75,982 +20 10097531 . G . . END=10097532 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:93:33:0,93,1395 +20 10097533 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,960 +20 10097534 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,967 +20 10097535 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:88:33:0,88,1011 +20 10097536 . T . . END=10097537 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:96:34:0,96,1440 +20 10097538 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:70:33:0,70,995 +20 10097539 . G . . END=10097542 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:30:0,90,931 +20 10097543 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:29:87:29:0,87,914 +20 10097544 . A . . END=10097546 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:30:0,90,957 +20 10097547 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,948 +20 10097548 . G . . END=10097549 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:31:0,90,875 +20 10097550 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:87:33:0,87,911 +20 10097551 . A . . END=10097554 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:90:30:0,90,933 +20 10097555 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:61:31:0,61,872 +20 10097556 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,984 +20 10097557 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:75:32:0,75,900 +20 10097558 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:82:31:0,82,940 +20 10097559 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:60:31:0,60,835 +20 10097560 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:90:31:0,90,1350 +20 10097561 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,948 +20 10097562 . G . . END=10097564 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:90:30:0,90,939 +20 10097565 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:82:31:0,82,951 +20 10097566 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:79:31:0,79,934 +20 10097567 . T . . END=10097569 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:93:32:0,93,1395 +20 10097570 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:65:31:0,65,891 +20 10097571 . T . . END=10097572 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:31:93:31:0,93,936 +20 10097573 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:85:32:0,85,936 +20 10097574 . G . . END=10097583 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:93:31:0,93,971 +20 10097584 . C . . END=10097585 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:99:33:0,99,1001 +20 10097586 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:30:90:30:0,90,911 +20 10097587 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:78:32:0,78,938 +20 10097588 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:32:84:32:0,84,940 +20 10097589 . A . . END=10097591 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:99:34:0,102,1030 +20 10097592 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:90:34:0,90,1016 +20 10097593 . C . . END=10097595 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:99:33:0,99,1012 +20 10097596 . G . . END=10097598 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:91:32:0,91,954 +20 10097599 . C . . END=10097601 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:34:99:34:0,102,1063 +20 10097602 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:88:35:0,88,1102 +20 10097603 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:76:35:0,76,1041 +20 10097604 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:99:35:0,99,1485 +20 10097605 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:82:35:0,82,1062 +20 10097606 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:99:35:0,99,1485 +20 10097607 . A . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:89:35:0,89,1065 +20 10097608 . C . . END=10097609 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:93:34:0,93,1395 +20 10097610 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:88:35:0,88,1036 +20 10097611 . A . . END=10097613 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:35:93:35:0,93,1395 +20 10097614 . C . . END=10097625 GT:DP:GQ:MIN_DP:PL ./.:69:99:45:0,109,1710 ./.:33:81:29:0,81,1014 +20 10097626 . C A, . . BaseQRankSum=1.09;ClippingRankSum=0.00;DP=77;ExcessHet=3.01;MQRankSum=-1.331e+00;RAW_MQandDP=162820,48;ReadPosRankSum=1.15 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:28,20,0:48:99:.:655,0,957,739,1017,1757:8,20,8,12 ./.:.:33:81:29:0,81,1014,81,1014,1014 +20 10097627 . T . . END=10097628 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:81:29:0,81,1014 +20 10097629 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:30:78:30:0,78,1170 +20 10097630 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:81:31:0,81,1215 +20 10097631 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:64:31:0,64,916 +20 10097632 . T . . END=10097633 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:72:31:0,72,1080 +20 10097634 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:68:29:0,68,806 +20 10097635 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:72:28:0,72,1080 +20 10097636 . T . . END=10097639 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:66:27:0,66,792 +20 10097640 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:26:56:26:0,56,715 +20 10097641 . C . . END=10097648 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:25:63:24:0,63,945 +20 10097649 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:57:23:0,57,649 +20 10097650 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:60:24:0,60,900 +20 10097651 . C . . END=10097653 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:57:21:0,57,855 +20 10097654 . T . . END=10097657 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:54:21:0,54,810 +20 10097658 . C . . END=10097665 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:51:19:0,51,765 +20 10097666 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:18:54:18:0,54,556 +20 10097667 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:57:19:0,57,568 +20 10097668 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:18:22:18:0,22,461 +20 10097669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:54:19:0,54,810 +20 10097670 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:41:19:0,41,505 +20 10097671 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:19:20:19:0,20,481 +20 10097672 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:21:47:21:0,47,612 +20 10097673 . T . . END=10097675 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:60:22:0,60,900 +20 10097676 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:58:23:0,58,642 +20 10097677 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:60:23:0,60,900 +20 10097678 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:46:23:0,46,645 +20 10097679 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:20:48:20:0,48,570 +20 10097680 . T . . END=10097681 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:22:63:22:0,63,945 +20 10097682 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:23:45:23:0,45,601 +20 10097683 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:69:24:0,69,1035 +20 10097684 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:53:24:0,53,706 +20 10097685 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:24:69:24:0,69,1035 +20 10097686 . T . . END=10097692 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:26:72:24:0,72,764 +20 10097693 . T . . END=10097694 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:69:27:0,69,792 +20 10097695 . C . . END=10097697 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:75:26:0,75,1125 +20 10097698 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:65:27:0,65,805 +20 10097699 . T . . END=10097700 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:27:78:26:0,78,823 +20 10097701 . T . . END=10097704 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:81:28:0,81,887 +20 10097705 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:57:28:0,57,847 +20 10097706 . T . . END=10097710 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:28:78:27:0,78,1170 +20 10097711 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:81:29:0,81,1215 +20 10097712 . G . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:75:29:0,75,872 +20 10097713 . C . . END=10097720 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:31:81:30:0,81,1215 +20 10097721 . C . . END=10097723 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:32:90:32:0,90,1350 +20 10097724 . A . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:29:87:29:0,87,905 +20 10097725 . G . . END=10097728 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:32:90:30:0,90,905 +20 10097729 . C . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:99:33:0,99,971 +20 10097730 . A . . END=10097737 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:33:93:32:0,93,981 +20 10097738 . G . . END=10097750 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:37:99:35:0,105,1005 +20 10097751 . T C, . . BaseQRankSum=-3.680e-01;ClippingRankSum=0.00;DP=87;ExcessHet=3.01;MQRankSum=0.00;RAW_MQandDP=136800,38;ReadPosRankSum=1.08 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:60:99:49:0,120,1800,120,1800,1800 ./.:1,37,0:38:82:.:994,82,0,997,110,1024:0,1,16,21 +20 10097752 . G . . END=10097763 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:38:99:36:0,105,1575 +20 10097764 . T . . . GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:39:84:39:0,84,1141 +20 10097765 . C . . END=10097788 GT:DP:GQ:MIN_DP:PL ./.:60:99:49:0,120,1800 ./.:42:99:39:0,111,1193 +20 10097789 . T C, . . BaseQRankSum=-1.157e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=-2.805e+00;RAW_MQandDP=356728,104;ReadPosRankSum=-9.200e-02 GT:AD:DP:GQ:PL:SB ./.:34,23,0:57:99:717,0,1190,820,1260,2079:14,20,13,10 ./.:0,43,0:43:99:1330,129,0,1330,129,1330:0,0,22,21 +20 10097790 . C . . END=10097868 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:42:99:36:0,100,1119 +20 10097869 . T . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:90:37:0,90,1136 +20 10097870 . T . . END=10097879 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:99:37:0,99,1120 +20 10097880 . G . . END=10097882 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:37:96:37:0,96,1440 +20 10097883 . G . . END=10097897 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:33:84:30:0,84,1260 +20 10097898 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:30:79:30:0,79,922 +20 10097899 . C . . END=10097900 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:33:90:32:0,90,1350 +20 10097901 . C . . END=10097905 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:99:35:0,99,1485 +20 10097906 . G . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:35:88:35:0,88,1026 +20 10097907 . C . . . GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:92:36:0,92,1084 +20 10097908 . C . . END=10097915 GT:DP:GQ:MIN_DP:PL ./.:69:99:42:0,108,1620 ./.:36:99:35:0,99,1485 +20 10097916 . T . . . GT:DP:GQ:MIN_DP:PL ./.:40:88:40:0,88,1449 ./.:36:99:35:0,99,1485 +20 10097917 . C . . END=10097919 GT:DP:GQ:MIN_DP:PL ./.:40:96:39:0,96,1440 ./.:36:99:35:0,99,1485 +20 10097920 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:99:40:0,99,1485 ./.:36:99:35:0,99,1485 +20 10097921 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:35:92:35:0,92,1058 +20 10097922 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:33:76:33:0,76,991 +20 10097923 . C . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:35:99:35:0,99,1485 +20 10097924 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:34:82:34:0,82,1038 +20 10097925 . C . . END=10097926 GT:DP:GQ:MIN_DP:PL ./.:38:93:37:0,93,1395 ./.:34:99:34:0,99,1485 +20 10097927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:38:99:38:0,99,1485 ./.:34:99:34:0,99,1485 +20 10097928 . G A, . . BaseQRankSum=-1.203e+00;ClippingRankSum=0.00;DP=70;ExcessHet=3.01;MQRankSum=-1.654e+00;RAW_MQandDP=243723,70;ReadPosRankSum=0.057 GT:AD:DP:GQ:PL:SB ./.:17,19,0:36:99:599,0,586,650,643,1293:9,8,8,11 ./.:0,29,0:29:87:939,87,0,939,87,939:0,0,21,8 +20 10097929 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:34:81:34:0,81,972 +20 10097930 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:99:36:0,99,1485 ./.:34:99:33:0,99,1013 +20 10097931 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:99:33:0,99,1013 +20 10097932 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:90:34:0,90,1011 +20 10097933 . C . . END=10097935 GT:DP:GQ:MIN_DP:PL ./.:35:99:35:0,99,1485 ./.:34:99:33:0,99,1031 +20 10097936 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:99:33:0,99,1031 +20 10097937 . T . . . GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:34:90:34:0,90,1057 +20 10097938 . G . . END=10097939 GT:DP:GQ:MIN_DP:PL ./.:36:96:35:0,96,1440 ./.:35:99:35:0,102,1530 +20 10097940 . T . . END=10097941 GT:DP:GQ:MIN_DP:PL ./.:35:84:35:0,84,1260 ./.:35:96:35:0,96,1440 +20 10097942 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:35:96:35:0,96,1440 +20 10097943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:35:80:35:0,80,993 +20 10097944 . C . . END=10097946 GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:36:93:35:0,93,1395 +20 10097947 . G . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:33:0,90,1350 ./.:32:81:27:0,81,866 +20 10097948 . C . . END=10097949 GT:DP:GQ:MIN_DP:PL ./.:38:87:38:0,87,1305 ./.:32:81:27:0,81,866 +20 10097950 . T . . END=10097951 GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:32:81:27:0,81,866 +20 10097952 . A . . END=10097953 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:32:81:27:0,81,866 +20 10097954 . C . . END=10097957 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:32:81:27:0,81,866 +20 10097958 . C . . END=10097960 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:32:81:27:0,81,866 +20 10097961 . A . . END=10097965 GT:DP:GQ:MIN_DP:PL ./.:34:93:34:0,93,1395 ./.:32:81:27:0,81,866 +20 10097966 . C . . END=10097969 GT:DP:GQ:MIN_DP:PL ./.:35:87:34:0,87,1305 ./.:32:81:27:0,81,866 +20 10097970 . G . . . GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:32:81:27:0,81,866 +20 10097971 . A . . END=10097978 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:29:75:28:0,75,1125 +20 10097979 . C . . END=10097980 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:31:81:30:0,81,1215 +20 10097981 . T . . END=10097985 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:31:90:31:0,90,947 +20 10097986 . C . . END=10097988 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:30:87:30:0,87,1305 +20 10097989 . T . . END=10097996 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:90:32:0,90,1350 +20 10097997 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:34:86:34:0,86,958 +20 10097998 . C . . END=10098002 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:33:90:33:0,90,1350 +20 10098003 . T . . END=10098006 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:32:84:30:0,84,896 +20 10098007 . T . . . GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:30:79:30:0,79,871 +20 10098008 . C . . END=10098009 GT:DP:GQ:MIN_DP:PL ./.:37:99:36:0,99,1485 ./.:30:84:30:0,84,1260 +20 10098010 . T . . END=10098011 GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:30:84:30:0,84,1260 +20 10098012 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:93:38:0,93,1395 ./.:32:90:32:0,90,1350 +20 10098013 . T . . END=10098014 GT:DP:GQ:MIN_DP:PL ./.:40:99:39:0,99,1485 ./.:32:90:32:0,90,1350 +20 10098015 . A . . . GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:33:54:33:0,54,926 +20 10098016 . T . . END=10098022 GT:DP:GQ:MIN_DP:PL ./.:38:93:36:0,93,1395 ./.:32:90:31:0,90,913 +20 10098023 . G . . END=10098027 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:35:99:34:0,99,1485 +20 10098028 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:34:81:34:0,81,1002 +20 10098029 . T . . END=10098031 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:34:96:34:0,96,1440 +20 10098032 . T . . END=10098037 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:37:99:35:0,99,1485 +20 10098038 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:38:97:38:0,97,1122 +20 10098039 . G . . END=10098056 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:39:99:36:0,99,1151 +20 10098057 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:37:96:37:0,96,1085 +20 10098058 . A . . END=10098059 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:40:99:39:0,106,1184 +20 10098060 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:38:87:38:0,87,1139 +20 10098061 . A . . END=10098065 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:39:99:38:0,114,1222 +20 10098066 . A . . . GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:40:88:40:0,88,1176 +20 10098067 . A . . END=10098074 GT:DP:GQ:MIN_DP:PL ./.:42:99:35:0,99,1418 ./.:42:99:40:0,100,1191 +20 10098075 . T . . . GT:DP:GQ:MIN_DP:PL ./.:40:92:40:0,92,1602 ./.:42:99:40:0,100,1191 +20 10098076 . T . . END=10098089 GT:DP:GQ:MIN_DP:PL ./.:38:99:37:0,99,1485 ./.:42:99:40:0,100,1191 +20 10098090 . T . . END=10098093 GT:DP:GQ:MIN_DP:PL ./.:37:96:36:0,96,1440 ./.:42:99:40:0,100,1191 +20 10098094 . T . . END=10098096 GT:DP:GQ:MIN_DP:PL ./.:37:99:37:0,99,1485 ./.:42:99:40:0,100,1191 +20 10098097 . A . . END=10098099 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:42:99:40:0,100,1191 +20 10098100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:40:86:40:0,86,1236 +20 10098101 . A . . END=10098102 GT:DP:GQ:MIN_DP:PL ./.:35:93:34:0,93,1395 ./.:44:99:39:0,111,1294 +20 10098103 . A . . END=10098108 GT:DP:GQ:MIN_DP:PL ./.:34:84:33:0,84,1260 ./.:44:99:39:0,111,1294 +20 10098109 . A . . . GT:DP:GQ:MIN_DP:PL ./.:36:93:36:0,93,1395 ./.:44:99:39:0,111,1294 +20 10098110 . G C, . . BaseQRankSum=2.51;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=-1.477e+00;RAW_MQandDP=282482,80;ReadPosRankSum=-7.140e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:19,17,0:36:99:0|1:10098110_G_C:615,0,727,672,779,1451:0,19,2,15 ./.:0,44,0:44:99:0|1:10098110_G_C:1893,135,0,1893,135,1893:0,0,18,26 +20 10098111 . T . . END=10098112 GT:DP:GQ:MIN_DP:PL ./.:36:93:35:0,93,1395 ./.:45:99:44:0,114,1710 +20 10098113 . T . . . GT:DP:GQ:MIN_DP:PL ./.:35:87:35:0,87,1305 ./.:45:99:44:0,114,1710 +20 10098114 . C . . END=10098119 GT:DP:GQ:MIN_DP:PL ./.:36:93:35:0,93,1395 ./.:45:99:44:0,114,1710 +20 10098120 . T . . END=10098125 GT:DP:GQ:MIN_DP:PL ./.:34:84:34:0,84,1260 ./.:45:99:44:0,114,1710 +20 10098126 . A . . END=10098127 GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:45:99:44:0,114,1710 +20 10098128 . G . . . GT:DP:GQ:MIN_DP:PL ./.:37:90:36:0,90,1350 ./.:42:89:42:0,89,1200 +20 10098129 . T . . END=10098132 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:44:99:43:0,118,1352 +20 10098133 . T . . END=10098134 GT:DP:GQ:MIN_DP:PL ./.:38:91:37:0,91,1395 ./.:44:99:43:0,118,1352 +20 10098135 . C A, . . BaseQRankSum=-1.155e+00;ClippingRankSum=0.00;DP=80;ExcessHet=3.01;MQRankSum=1.55;RAW_MQandDP=286382,80;ReadPosRankSum=-7.690e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:24,14,0:38:99:0|1:10098110_G_C:500,0,964,575,1006,1581:0,24,1,13 ./.:0,41,0:41:99:0|1:10098110_G_C:1780,126,0,1780,126,1780:0,0,21,20 +20 10098136 . A . . END=10098147 GT:DP:GQ:MIN_DP:PL ./.:36:90:33:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098148 . T . . . GT:DP:GQ:MIN_DP:PL ./.:33:87:33:0,87,1305 ./.:42:99:40:0,106,1249 +20 10098149 . T . . END=10098150 GT:DP:GQ:MIN_DP:PL ./.:34:90:33:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098151 . A . . END=10098160 GT:DP:GQ:MIN_DP:PL ./.:33:83:31:0,83,1260 ./.:42:99:40:0,106,1249 +20 10098161 . A . . END=10098163 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:42:99:40:0,106,1249 +20 10098164 . G . . . GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:41:89:41:0,89,1218 +20 10098165 . C . . END=10098172 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:39:99:37:0,99,1139 +20 10098173 . T . . END=10098176 GT:DP:GQ:MIN_DP:PL ./.:33:90:31:0,90,1350 ./.:36:87:36:0,87,1305 +20 10098177 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:36:90:36:0,90,1350 +20 10098178 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:36:81:36:0,81,1215 +20 10098179 . A . . END=10098180 GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:37:72:37:0,72,1080 +20 10098181 . T . . END=10098185 GT:DP:GQ:MIN_DP:PL ./.:31:81:31:0,81,1215 ./.:34:63:33:0,63,945 +20 10098186 . A . . END=10098195 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:34:63:33:0,63,945 +20 10098196 . A . . END=10098197 GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:33:57:33:0,57,855 +20 10098198 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:33:54:33:0,54,810 +20 10098199 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:27:0,72,1080 ./.:33:45:33:0,45,675 +20 10098200 . C . . . GT:DP:GQ:MIN_DP:PL ./.:28:60:28:0,60,900 ./.:33:39:33:0,39,585 +20 10098201 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:60:28:0,60,900 ./.:34:27:34:0,27,405 +20 10098202 . G . . END=10098203 GT:DP:GQ:MIN_DP:PL ./.:28:60:28:0,60,900 ./.:33:21:33:0,21,315 +20 10098204 . G . . . GT:DP:GQ:MIN_DP:PL ./.:28:48:28:0,48,720 ./.:31:15:30:0,15,225 +20 10098205 . T . . END=10098206 GT:DP:GQ:MIN_DP:PL ./.:28:45:28:0,45,675 ./.:31:15:30:0,15,225 +20 10098207 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:42:27:0,42,630 ./.:31:15:30:0,15,225 +20 10098208 . T . . . GT:DP:GQ:MIN_DP:PL ./.:28:42:27:0,42,630 ./.:31:12:31:0,12,180 +20 10098209 . T . . END=10098214 GT:DP:GQ:MIN_DP:PL ./.:24:36:24:0,36,540 ./.:29:0:26:0,0,0 +20 10098215 . T . . END=10098216 GT:DP:GQ:MIN_DP:PL ./.:22:33:21:0,33,495 ./.:29:0:26:0,0,0 +20 10098217 . T . . . GT:DP:GQ:MIN_DP:PL ./.:21:27:21:0,27,405 ./.:29:0:26:0,0,0 +20 10098218 . G . . . GT:DP:GQ:MIN_DP:PL ./.:21:22:21:0,22,768 ./.:29:0:26:0,0,0 +20 10098219 . TATATATA T, . . BaseQRankSum=3.15;ClippingRankSum=0.00;DP=54;ExcessHet=3.01;MQRankSum=-2.050e-01;RAW_MQandDP=184505,54;ReadPosRankSum=0.498 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098220 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098221 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098222 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098223 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098224 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098225 . T *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098226 . A *, . . DP=54 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:12,9,0:21:99:0|1:10098219_TATATATA_T:333,0,461,369,488,858:0,12,0,9 ./.:0,31,0:31:96:0|1:10098219_TATATATA_T:1369,96,0,1369,96,1369:0,0,16,15 +20 10098227 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:0:18:0,0,86 ./.:31:0:30:0,0,0 +20 10098228 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:14:18:0,14,662 ./.:31:0:30:0,0,0 +20 10098229 . A . . . GT:DP:GQ:MIN_DP:PL ./.:18:21:18:0,21,315 ./.:34:32:34:0,32,910 +20 10098230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:16:18:0,16,657 ./.:34:78:34:0,78,1170 +20 10098231 . A . . . GT:DP:GQ:MIN_DP:PL ./.:18:19:18:0,19,656 ./.:37:84:36:0,84,1260 +20 10098232 . T . . . GT:DP:GQ:MIN_DP:PL ./.:17:11:17:0,11,615 ./.:37:84:36:0,84,1260 +20 10098233 . A . . . GT:DP:GQ:MIN_DP:PL ./.:15:21:12:0,21,315 ./.:37:84:36:0,84,1260 +20 10098234 . T . . END=10098236 GT:DP:GQ:MIN_DP:PL ./.:15:21:12:0,21,315 ./.:41:93:40:0,93,1395 +20 10098237 . A T, . . BaseQRankSum=6.000e-03;ClippingRankSum=0.00;DP=47;ExcessHet=3.01;MQRankSum=-1.742e+00;RAW_MQandDP=159000,47;ReadPosRankSum=0.277 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:6,7,0:13:99:0|1:10098219_TATATATA_T:273,0,273,294,294,588:0,6,0,7 ./.:0,33,0:33:98:0|1:10098219_TATATATA_T:1345,98,0,1345,98,1345:0,0,16,17 +20 10098238 . A . . END=10098241 GT:DP:GQ:MIN_DP:PL ./.:10:21:8:0,21,315 ./.:42:84:41:0,84,1260 +20 10098242 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:21:8:0,21,315 ./.:35:44:35:0,44,916 +20 10098243 . T . . END=10098244 GT:DP:GQ:MIN_DP:PL ./.:10:21:8:0,21,315 ./.:42:81:39:0,81,1215 +20 10098245 . T . . END=10098248 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:42:81:39:0,81,1215 +20 10098249 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:36:0:36:0,0,662 +20 10098250 . T . . END=10098254 GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:44:72:44:0,72,1080 +20 10098255 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:36:52:36:0,52,897 +20 10098256 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:45:57:45:0,57,855 +20 10098257 . A . . END=10098260 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:48:0:47:0,0,405 +20 10098261 . T . . END=10098262 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:48:87:48:0,87,1305 +20 10098263 . T . . END=10098264 GT:DP:GQ:MIN_DP:PL ./.:8:9:6:0,9,135 ./.:49:90:44:0,90,1350 +20 10098265 . T C, . . BaseQRankSum=1.83;ClippingRankSum=0.00;DP=50;ExcessHet=3.01;MQRankSum=-1.834e+00;RAW_MQandDP=10564,6;ReadPosRankSum=0.00 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:2,4,0:6:59:.:0|1:10098219_TATATATA_T:162,0,59,168,71,239:0,2,0,4 ./.:.:49:90:44:.:.:0,90,1350,90,1350,1350 +20 10098266 . A . . END=10098270 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,121 ./.:44:81:43:0,81,1215 +20 10098271 . A . . END=10098275 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,121 ./.:49:72:43:0,72,1080 +20 10098276 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,121 ./.:42:60:37:0,60,900 +20 10098277 . T . . END=10098278 GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:42:60:37:0,60,900 +20 10098279 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:37:54:37:0,54,810 +20 10098280 . A . . END=10098284 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,114 ./.:48:51:42:0,51,765 +20 10098285 . T . . END=10098288 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,114 ./.:43:45:41:0,45,675 +20 10098289 . A . . END=10098290 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,114 ./.:41:33:40:0,33,495 +20 10098291 . A . . END=10098292 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,114 ./.:42:27:41:0,27,405 +20 10098293 . G . . . GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,114 ./.:29:24:29:0,24,360 +20 10098294 . T . . END=10098296 GT:DP:GQ:MIN_DP:PL ./.:4:9:3:0,9,114 ./.:40:15:40:0,15,225 +20 10098297 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:40:15:40:0,15,225 +20 10098298 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:36:12:36:0,12,180 +20 10098299 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:39:9:39:0,9,135 +20 10098300 . T . . END=10098305 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:41:6:35:0,6,90 +20 10098306 . G . . END=10098307 GT:DP:GQ:MIN_DP:PL ./.:3:6:2:0,6,86 ./.:32:3:27:0,3,45 +20 10098308 . AAT A, . . DP=35;ExcessHet=3.01;RAW_MQandDP=7200,2 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098309 . A *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098310 . T *, . . DP=35 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:2,0,0:2:6:.:0,6,81,6,81,81:0,2,0,0 ./.:.:39:0:33:0,0,0,0,0,0 +20 10098311 . A . . . GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,80 ./.:39:0:33:0,0,0 +20 10098312 . T . . END=10098321 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,80 ./.:40:72:37:0,72,1080 +20 10098322 . A . . END=10098327 GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,121 ./.:38:60:32:0,60,900 +20 10098328 . T . . END=10098329 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,169 ./.:38:60:32:0,60,900 +20 10098330 . A . . END=10098338 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:38:45:31:0,45,675 +20 10098339 . A . . END=10098342 GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:35:0:33:0,0,217 +20 10098343 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:9:4:0,9,135 ./.:34:51:34:0,51,765 +20 10098344 . A . . . GT:DP:GQ:MIN_DP:PL ./.:4:0:4:0,0,1 ./.:32:0:32:0,0,0 +20 10098345 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:33:39:33:0,39,585 +20 10098346 . A . . END=10098348 GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:31:36:28:0,36,540 +20 10098349 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:29:27:29:0,27,405 +20 10098350 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,125 ./.:29:24:29:0,24,360 +20 10098351 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:28:15:28:0,15,225 +20 10098352 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:29:12:29:0,12,180 +20 10098353 . A . . END=10098356 GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:28:9:24:0,9,135 +20 10098357 . G . . . GT:DP:GQ:MIN_DP:PL ./.:3:6:3:0,6,90 ./.:23:6:23:0,6,90 +20 10098358 . T . . END=10098359 GT:DP:GQ:MIN_DP:PL ./.:3:3:3:0,3,45 ./.:9:0:2:0,0,0 +20 10098360 . A . . END=10098380 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:9:0:2:0,0,0 +20 10098381 . T . . END=10098431 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:9:0:2:0,0,0 +20 10098432 . A . . END=10098435 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:2:3:2:0,3,45 +20 10098436 . A . . END=10098454 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,37 ./.:0:0:0:0,0,0 +20 10098455 . A . . END=10098551 GT:DP:GQ:MIN_DP:PL ./.:0:0:0:0,0,0 ./.:0:0:0:0,0,0 +20 10098552 . T . . END=10098572 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:0:0:0:0,0,0 +20 10098573 . A . . END=10098574 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:9:21:9:0,21,315 +20 10098575 . A . . END=10098580 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:10:0:9:0,0,0 +20 10098581 . T . . END=10098586 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:12:27:11:0,27,405 +20 10098587 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:30:13:0,30,450 +20 10098588 . T . . END=10098594 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:27:13:0,27,405 +20 10098595 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:14:13:0,14,365 +20 10098596 . A . . END=10098597 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:14:0,0,0 +20 10098598 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,346 +20 10098599 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,374 +20 10098600 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,353 +20 10098601 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,399 +20 10098602 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:17:14:0,17,415 +20 10098603 . T . . END=10098608 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:21:13:0,21,315 +20 10098609 . A . . END=10098612 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:18:14:0,18,270 +20 10098613 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:12:0:12:0,0,74 +20 10098614 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:18:13:0,18,270 +20 10098615 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:9:14:0,9,363 +20 10098616 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:7:14:0,7,363 +20 10098617 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:14:0,0,6 +20 10098618 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:9:14:0,9,356 +20 10098619 . T . . END=10098624 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:15:14:0,15,225 +20 10098625 . A . . END=10098626 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:10:15:0,10,384 +20 10098627 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:13:4:13:0,4,322 +20 10098628 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:10:15:0,10,380 +20 10098629 . G . . END=10098632 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:14:0:12:0,0,44 +20 10098633 . A . . END=10098636 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:27:14:0,27,405 +20 10098637 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,40 ./.:15:12:15:0,12,379 +20 10098638 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:14:9:14:0,9,359 +20 10098639 . T . . END=10098643 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:15:21:14:0,21,315 +20 10098644 . ATT A, . . DP=8;ExcessHet=3.01;RAW_MQandDP=8736,7 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098645 . T *, . . DP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098646 . T *, . . DP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:0:1:.:.:0,0,0,0,0,0 ./.:0,4,0:4:15:.:0|1:10098644_ATT_A:225,15,0,225,15,225:0,0,2,2 +20 10098647 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:16:0:16:0,0,228 +20 10098648 . T . . END=10098650 GT:DP:GQ:MIN_DP:PL ./.:1:0:1:0,0,0 ./.:18:33:17:0,33,495 +20 10098651 . A . . END=10098653 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:18:33:17:0,33,495 +20 10098654 . A . . END=10098657 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:17:0:17:0,0,155 +20 10098658 . G . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:16:29:16:0,29,391 +20 10098659 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:18:30:18:0,30,450 +20 10098660 . G A, . . DP=11;ExcessHet=3.01;RAW_MQandDP=16843,10 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:3:1:.:.:0,3,33,3,33,33 ./.:0,7,0:7:21:.:0|1:10098644_ATT_A:315,21,0,315,21,315:0,0,5,2 +20 10098661 . T . . END=10098666 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:20:24:19:0,24,360 +20 10098667 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:20:0:20:0,0,433 +20 10098668 . A AAT, . . DP=12;ExcessHet=3.01;RAW_MQandDP=20443,11 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:1:3:1:.:.:0,3,33,3,33,33 ./.:0,8,0:8:27:.:0|1:10098644_ATT_A:405,27,0,405,27,405:0,0,6,2 +20 10098669 . A . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:0:21:0,0,63 +20 10098670 . T . . END=10098671 GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:9:21:0,9,135 +20 10098672 . T . . . GT:DP:GQ:MIN_DP:PL ./.:1:3:1:0,3,33 ./.:21:12:21:0,12,180 +20 10098673 . A . . END=10098674 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:21:12:21:0,12,180 +20 10098675 . A . . END=10098678 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:21:0:20:0,0,339 +20 10098679 . T . . END=10098682 GT:DP:GQ:MIN_DP:PL ./.:2:6:2:0,6,72 ./.:22:18:21:0,18,270 +20 10098683 . T . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:22:18:21:0,18,270 +20 10098684 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:20:15:20:0,15,225 +20 10098685 . A . . . GT:DP:GQ:MIN_DP:PL ./.:3:9:3:0,9,116 ./.:19:12:19:0,12,180 +20 10098686 . T . . END=10098688 GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,150 ./.:19:9:19:0,9,135 +20 10098689 . GTA G, . . DP=21;ExcessHet=3.01;RAW_MQandDP=37368,17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098690 . T *, . . DP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098691 . A *, . . DP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:4:12:4:.:.:0,12,150,12,150,150 ./.:0,13,0:13:42:.:0|1:10098644_ATT_A:630,42,0,630,42,630:0,0,9,4 +20 10098692 . T . . . GT:DP:GQ:MIN_DP:PL ./.:4:12:4:0,12,150 ./.:21:0:21:0,0,0 +20 10098693 . A . . END=10098696 GT:DP:GQ:MIN_DP:PL ./.:5:15:5:0,15,201 ./.:21:21:20:0,21,315 +20 10098697 . A . . END=10098700 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:21:20:0,21,315 +20 10098701 . T . . END=10098703 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:15:20:0,15,225 +20 10098704 . A G, . . DP=26;ExcessHet=3.01;RAW_MQandDP=48168,20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:6:18:6:.:.:0,18,231,18,231,231 ./.:0,16,0:16:54:.:0|1:10098644_ATT_A:810,54,0,810,54,810:0,0,11,5 +20 10098705 . T . . END=10098707 GT:DP:GQ:MIN_DP:PL ./.:6:18:6:0,18,231 ./.:21:15:20:0,15,225 +20 10098708 . A . . END=10098712 GT:DP:GQ:MIN_DP:PL ./.:7:21:7:0,21,277 ./.:21:15:20:0,15,225 +20 10098713 . A . . . GT:DP:GQ:MIN_DP:PL ./.:8:0:8:0,0,262 ./.:21:15:20:0,15,225 +20 10098714 . T . . END=10098717 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:21:15:20:0,15,225 +20 10098718 . T . . END=10098719 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:6:20:0,6,90 +20 10098720 . A . . END=10098722 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:3:19:0,3,45 +20 10098723 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:10:8:0,10,265 ./.:20:3:19:0,3,45 +20 10098724 . G . . . GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,297 ./.:20:3:19:0,3,45 +20 10098725 . T . . END=10098728 GT:DP:GQ:MIN_DP:PL ./.:8:21:7:0,21,289 ./.:20:0:20:0,0,0 +20 10098729 . T TATATA, . . DP=32;ExcessHet=3.01;RAW_MQandDP=61892,23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB ./.:.:9:24:9:.:.:0,24,360,24,360,360 ./.:0,19,0:19:57:.:0|1:10098644_ATT_A:855,57,0,855,57,855:0,0,12,7 +20 10098730 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:0:20:0,0,0 +20 10098731 . T . . END=10098732 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:27:20:0,27,405 +20 10098733 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:9:9:0,9,309 ./.:20:0:20:0,0,493 +20 10098734 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:0:20:0,0,493 +20 10098735 . T . . END=10098737 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:27:20:0,27,405 +20 10098738 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,310 ./.:20:23:20:0,23,595 +20 10098739 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,353 ./.:17:27:17:0,27,405 +20 10098740 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,353 ./.:15:18:15:0,18,270 +20 10098741 . A . . END=10098748 GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:15:18:15:0,18,270 +20 10098749 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:16:12:15:0,12,180 +20 10098750 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:0:9:0,0,289 ./.:16:12:15:0,12,180 +20 10098751 . T . . END=10098754 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:16:12:15:0,12,180 +20 10098755 . T . . END=10098756 GT:DP:GQ:MIN_DP:PL ./.:8:24:8:0,24,298 ./.:18:9:16:0,9,135 +20 10098757 . T . . END=10098761 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,343 ./.:18:9:16:0,9,135 +20 10098762 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:9:0,24,360 ./.:20:3:18:0,3,45 +20 10098763 . T . . END=10098770 GT:DP:GQ:MIN_DP:PL ./.:10:27:10:0,27,405 ./.:20:3:18:0,3,45 +20 10098771 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:21:0:20:0,0,0 +20 10098772 . T . . END=10098775 GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:21:0:20:0,0,0 +20 10098776 . T . . . GT:DP:GQ:MIN_DP:PL ./.:10:24:10:0,24,360 ./.:21:3:20:0,3,45 +20 10098777 . A . . END=10098778 GT:DP:GQ:MIN_DP:PL ./.:10:21:10:0,21,315 ./.:21:3:20:0,3,45 +20 10098779 . A . . . GT:DP:GQ:MIN_DP:PL ./.:10:18:10:0,18,270 ./.:21:3:20:0,3,45 +20 10098780 . T . . END=10098782 GT:DP:GQ:MIN_DP:PL ./.:10:18:10:0,18,270 ./.:21:6:21:0,6,90 +20 10098783 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:15:9:0,15,225 ./.:22:9:22:0,9,135 +20 10098784 . TAC T, . . DP=19;ExcessHet=3.01;RAW_MQandDP=33076,10 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:18:9:0,18,270,18,270,270 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098785 . A *, . . DP=19 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:18:9:0,18,270,18,270,270 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098786 . C *, . . DP=19 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:.:9:0:9:0,0,168,0,168,168 ./.:0,8,0:8:24:.:324,24,0,324,24,324:0,0,4,4 +20 10098787 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:18:9:0,18,270 ./.:21:0:21:0,0,0 +20 10098788 . C . . . GT:DP:GQ:MIN_DP:PL ./.:8:15:8:0,15,225 ./.:18:22:18:0,22,489 +20 10098789 . T . . . GT:DP:GQ:MIN_DP:PL ./.:8:18:8:0,18,270 ./.:20:60:20:0,60,635 +20 10098790 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:41:22:0,41,590 +20 10098791 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:63:22:0,63,945 +20 10098792 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:21:9:0,21,315 ./.:22:48:22:0,48,586 +20 10098793 . A . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:23:35:23:0,35,612 +20 10098794 . T . . END=10098797 GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:63:24:0,63,945 +20 10098798 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:43:24:0,43,722 +20 10098799 . T . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:24:63:24:0,63,945 +20 10098800 . G . . . GT:DP:GQ:MIN_DP:PL ./.:9:24:8:0,24,288 ./.:23:42:23:0,42,612 +20 10098801 . T . . END=10098802 GT:DP:GQ:MIN_DP:PL ./.:9:27:9:0,27,326 ./.:22:60:22:0,60,900 +20 10098803 . T . . END=10098804 GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:22:60:22:0,60,900 +20 10098805 . G . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:22:33:22:0,33,541 +20 10098806 . T . . . GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:24:57:24:0,57,855 +20 10098807 . T . . END=10098808 GT:DP:GQ:MIN_DP:PL ./.:11:30:10:0,30,371 ./.:25:60:24:0,60,900 +20 10098809 . T . . . GT:DP:GQ:MIN_DP:PL ./.:13:33:13:0,33,495 ./.:25:57:25:0,57,855 +20 10098810 . G . . . GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:24:56:24:0,56,711 +20 10098811 . T . . END=10098815 GT:DP:GQ:MIN_DP:PL ./.:14:36:14:0,36,540 ./.:27:61:24:0,61,699 +20 10098816 . T . . END=10098818 GT:DP:GQ:MIN_DP:PL ./.:15:42:15:0,42,630 ./.:27:61:24:0,61,699 +20 10098819 . G . . . GT:DP:GQ:MIN_DP:PL ./.:15:45:15:0,45,597 ./.:23:51:23:0,51,685 +20 10098820 . A . . . GT:DP:GQ:MIN_DP:PL ./.:16:48:16:0,48,624 ./.:25:72:25:0,72,1080 +20 10098821 . T . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:72:25:0,72,1080 +20 10098822 . G . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:50:25:0,50,702 +20 10098823 . A . . . GT:DP:GQ:MIN_DP:PL ./.:17:51:17:0,51,677 ./.:25:72:25:0,72,1080 +20 10098824 . A . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:25:72:25:0,72,1080 +20 10098825 . G . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:23:69:23:0,69,710 +20 10098826 . T . . . GT:DP:GQ:MIN_DP:PL ./.:18:54:18:0,54,705 ./.:25:72:25:0,72,1080 +20 10098827 . T . . . GT:DP:GQ:MIN_DP:PL ./.:19:57:19:0,57,752 ./.:26:60:25:0,60,900 +20 10098828 . T . . END=10098833 GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:26:60:25:0,60,900 +20 10098834 . T . . END=10098835 GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:26:51:26:0,51,765 +20 10098836 . G . . . GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:27:45:27:0,45,675 +20 10098837 . T . . END=10098838 GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:27:42:26:0,42,630 +20 10098839 . C . . END=10098842 GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:26:36:25:0,36,540 +20 10098843 . A . . END=10098851 GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:26:33:23:0,33,495 +20 10098852 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:27:30:27:0,30,450 +20 10098853 . G . . END=10098857 GT:DP:GQ:MIN_DP:PL ./.:25:60:20:0,60,799 ./.:27:27:27:0,27,405 +20 10098858 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:24:0,57,855 ./.:26:24:25:0,24,360 +20 10098859 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:29:24:0,29,851 ./.:26:24:25:0,24,360 +20 10098860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:27:21:27:0,21,315 +20 10098861 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:57:23:0,57,855 ./.:27:18:27:0,18,270 +20 10098862 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:60:25:0,60,900 ./.:30:15:28:0,15,225 +20 10098863 . G . . END=10098866 GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,855 ./.:30:15:28:0,15,225 +20 10098867 . T . . . GT:DP:GQ:MIN_DP:PL ./.:25:57:25:0,57,855 ./.:32:9:30:0,9,135 +20 10098868 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:54:25:0,54,810 ./.:32:9:30:0,9,135 +20 10098869 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:60:27:0,60,900 ./.:32:9:30:0,9,135 +20 10098870 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:60:27:0,60,900 ./.:32:6:32:0,6,90 +20 10098871 . C . . END=10098873 GT:DP:GQ:MIN_DP:PL ./.:29:57:28:0,57,855 ./.:32:6:32:0,6,90 +20 10098874 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:54:30:0,54,810 ./.:33:3:32:0,3,45 +20 10098875 . C . . END=10098876 GT:DP:GQ:MIN_DP:PL ./.:30:48:30:0,48,720 ./.:33:3:32:0,3,45 +20 10098877 . G . . END=10098880 GT:DP:GQ:MIN_DP:PL ./.:31:45:30:0,45,675 ./.:33:3:32:0,3,45 +20 10098881 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:48:31:0,48,720 ./.:33:6:32:0,6,90 +20 10098882 . C . . END=10098883 GT:DP:GQ:MIN_DP:PL ./.:32:51:32:0,51,765 ./.:33:6:32:0,6,90 +20 10098884 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:48:32:0,48,720 ./.:33:6:32:0,6,90 +20 10098885 . C CA, . . BaseQRankSum=0.165;ClippingRankSum=0.00;DP=61;ExcessHet=3.01;MQRankSum=-4.449e+00;RAW_MQandDP=183016,61;ReadPosRankSum=-1.590e-01 GT:AD:DP:GQ:PL:SB ./.:17,14,0:31:99:471,0,572,523,614,1137:16,1,13,1 ./.:0,29,0:29:87:1163,87,0,1163,87,1163:0,0,16,13 +20 10098886 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:0:31:0,0,240 ./.:33:0:33:0,0,0 +20 10098887 . C . . END=10098888 GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:35:99:34:0,102,1027 +20 10098889 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:32:96:32:0,96,972 +20 10098890 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:29:0,84,1260 ./.:34:99:33:0,99,918 +20 10098891 . C . . . GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:34:99:33:0,99,918 +20 10098892 . G . . END=10098893 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:99:33:0,99,918 +20 10098894 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:31:76:31:0,76,929 +20 10098895 . T . . END=10098896 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:99:33:0,99,1041 +20 10098897 . C . . END=10098898 GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:33:96:32:0,96,995 +20 10098899 . A . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:35:99:35:0,99,1485 +20 10098900 . G . . . GT:DP:GQ:MIN_DP:PL ./.:31:81:30:0,81,1215 ./.:34:96:34:0,96,1440 +20 10098901 . T . . END=10098902 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:96:34:0,96,1440 +20 10098903 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:33:87:33:0,87,955 +20 10098904 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:96:34:0,96,1440 +20 10098905 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:34:89:34:0,89,1030 +20 10098906 . C . . END=10098907 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:33:90:32:0,90,1350 +20 10098908 . C . . END=10098915 GT:DP:GQ:MIN_DP:PL ./.:27:60:25:0,60,900 ./.:33:90:32:0,90,1350 +20 10098916 . A . . END=10098918 GT:DP:GQ:MIN_DP:PL ./.:27:60:25:0,60,900 ./.:31:81:27:0,81,858 +20 10098919 . C . . END=10098923 GT:DP:GQ:MIN_DP:PL ./.:23:54:21:0,54,810 ./.:31:81:27:0,81,858 +20 10098924 . G . . END=10098926 GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:31:81:27:0,81,858 +20 10098927 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:45:20:0,45,675 ./.:31:81:27:0,81,858 +20 10098928 . A . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:31:81:27:0,81,858 +20 10098929 . G . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:26:78:26:0,78,826 +20 10098930 . C . . . GT:DP:GQ:MIN_DP:PL ./.:19:48:19:0,48,720 ./.:28:81:27:0,81,814 +20 10098931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:20:51:20:0,51,765 ./.:28:81:27:0,81,814 +20 10098932 . G . . END=10098937 GT:DP:GQ:MIN_DP:PL ./.:21:45:19:0,45,675 ./.:28:81:27:0,81,814 +20 10098938 . A . . END=10098940 GT:DP:GQ:MIN_DP:PL ./.:21:54:21:0,54,810 ./.:28:81:27:0,81,814 +20 10098941 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:57:22:0,57,855 ./.:28:81:27:0,81,814 +20 10098942 . G . . . GT:DP:GQ:MIN_DP:PL ./.:23:63:23:0,63,945 ./.:28:81:27:0,81,814 +20 10098943 . T . . . GT:DP:GQ:MIN_DP:PL ./.:21:52:21:0,52,766 ./.:27:70:27:0,70,840 +20 10098944 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,867 ./.:27:81:27:0,81,869 +20 10098945 . T C, . . BaseQRankSum=1.48;ClippingRankSum=0.00;DP=48;ExcessHet=3.01;MQRankSum=-2.504e+00;RAW_MQandDP=148542,48;ReadPosRankSum=0.837 GT:AD:DP:GQ:PL:SB ./.:9,13,0:22:99:481,0,248,508,288,795:8,1,13,0 ./.:0,25,0:25:75:793,75,0,793,75,793:0,0,13,12 +20 10098946 . C . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,872 ./.:28:81:28:0,81,1215 +20 10098947 . T . . . GT:DP:GQ:MIN_DP:PL ./.:22:55:22:0,55,842 ./.:27:75:27:0,75,1125 +20 10098948 . G . . . GT:DP:GQ:MIN_DP:PL ./.:22:66:22:0,66,897 ./.:27:75:27:0,75,1125 +20 10098949 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,937 ./.:28:69:28:0,69,1035 +20 10098950 . C . . END=10098951 GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,937 ./.:29:72:28:0,72,1080 +20 10098952 . C . . END=10098953 GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:29:72:28:0,72,1080 +20 10098954 . A . . END=10098955 GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:30:66:29:0,66,990 +20 10098956 . A . . . GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:30:66:29:0,66,990 +20 10098957 . C . . END=10098959 GT:DP:GQ:MIN_DP:PL ./.:26:72:25:0,72,1080 ./.:30:72:29:0,72,1080 +20 10098960 . G . . END=10098961 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:69:28:0,69,1035 +20 10098962 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:72:29:0,72,1080 +20 10098963 . T . . END=10098966 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:28:69:27:0,69,1035 +20 10098967 . T . . END=10098971 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:28:72:28:0,72,1080 +20 10098972 . T . . END=10098983 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:29:81:28:0,81,866 +20 10098984 . A . . END=10098986 GT:DP:GQ:MIN_DP:PL ./.:24:60:22:0,60,900 ./.:33:90:31:0,90,977 +20 10098987 . C T, . . BaseQRankSum=3.13;ClippingRankSum=0.00;DP=55;ExcessHet=3.01;MQRankSum=-2.734e+00;RAW_MQandDP=64586,24;ReadPosRankSum=0.348 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:11,13,0:24:99:.:408,0,350,441,389,830:9,2,13,0 ./.:.:33:90:31:0,90,977,90,977,977 +20 10098988 . G . . END=10099008 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:33:90:31:0,90,977 +20 10099009 . G . . END=10099010 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:31:87:30:0,87,1305 +20 10099011 . C . . . GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:31:77:31:0,77,941 +20 10099012 . T . . END=10099016 GT:DP:GQ:MIN_DP:PL ./.:23:60:22:0,60,890 ./.:30:87:30:0,87,1305 +20 10099017 . T . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,950 ./.:30:87:30:0,87,1305 +20 10099018 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:72:24:0,72,950 ./.:31:90:31:0,90,1350 +20 10099019 . G . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:31:87:31:0,87,1305 +20 10099020 . A . . . GT:DP:GQ:MIN_DP:PL ./.:24:69:24:0,69,1035 ./.:32:90:32:0,90,1350 +20 10099021 . A . . . GT:DP:GQ:MIN_DP:PL ./.:25:72:25:0,72,1080 ./.:32:90:32:0,90,1350 +20 10099022 . C . . . GT:DP:GQ:MIN_DP:PL ./.:25:69:25:0,69,1035 ./.:32:90:32:0,90,1350 +20 10099023 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:32:87:32:0,87,1305 +20 10099024 . C . . END=10099025 GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:33:90:33:0,90,1350 +20 10099026 . T . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:33:83:33:0,83,1048 +20 10099027 . G . . . GT:DP:GQ:MIN_DP:PL ./.:27:72:26:0,72,1080 ./.:32:90:32:0,90,1350 +20 10099028 . A . . . GT:DP:GQ:MIN_DP:PL ./.:28:69:28:0,69,1035 ./.:33:88:33:0,88,999 +20 10099029 . T C, . . BaseQRankSum=-1.809e+00;ClippingRankSum=0.00;DP=57;ExcessHet=3.01;MQRankSum=-3.641e+00;RAW_MQandDP=181311,57;ReadPosRankSum=-7.930e-01 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:14,4,9,1 ./.:0,29,0:29:87:0|1:10099029_T_C:1277,87,0,1277,87,1277:0,0,17,12 +20 10099030 . C . . END=10099031 GT:DP:GQ:MIN_DP:PL ./.:29:72:28:0,72,1080 ./.:32:90:31:0,90,1350 +20 10099032 . T . . END=10099033 GT:DP:GQ:MIN_DP:PL ./.:28:63:28:0,63,945 ./.:31:87:31:0,87,1305 +20 10099034 . C A, . . BaseQRankSum=2.76;ClippingRankSum=0.00;DP=55;ExcessHet=3.01;MQRankSum=-3.641e+00;RAW_MQandDP=174111,55;ReadPosRankSum=-1.540e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:18,10,0:28:99:0|1:10099029_T_C:363,0,768,420,798,1218:13,5,9,1 ./.:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,17,10 +20 10099035 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:87:31:0,87,1305 +20 10099036 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:32:90:32:0,90,1350 +20 10099037 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:82:31:0,82,961 +20 10099038 . G . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:30:90:30:0,90,972 +20 10099039 . A . . . GT:DP:GQ:MIN_DP:PL ./.:29:60:26:0,60,900 ./.:31:81:31:0,81,924 +20 10099040 . T . . . GT:DP:GQ:MIN_DP:PL ./.:26:51:26:0,51,765 ./.:31:81:31:0,81,924 +20 10099041 . C . . . GT:DP:GQ:MIN_DP:PL ./.:27:54:27:0,54,810 ./.:31:81:31:0,81,924 +20 10099042 . T . . END=10099043 GT:DP:GQ:MIN_DP:PL ./.:26:57:24:0,57,855 ./.:31:81:31:0,81,924 +20 10099044 . A C, . . BaseQRankSum=-1.148e+00;ClippingRankSum=0.00;DP=51;ExcessHet=3.01;MQRankSum=-4.418e+00;RAW_MQandDP=151645,51;ReadPosRankSum=-2.625e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,9,0:24:99:0|1:10099029_T_C:363,0,768,420,798,1218:12,3,7,2 ./.:0,27,0:27:81:0|1:10099029_T_C:1215,81,0,1215,81,1215:0,0,18,9 +20 10099045 . C . . . GT:DP:GQ:MIN_DP:PL ./.:24:60:24:0,60,900 ./.:32:84:32:0,84,1260 +20 10099046 . T C, . . BaseQRankSum=-2.165e+00;ClippingRankSum=0.00;DP=51;ExcessHet=3.01;MQRankSum=-4.418e+00;RAW_MQandDP=151645,51;ReadPosRankSum=-2.686e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,9,0:24:99:0|1:10099029_T_C:333,0,603,378,630,1008:12,3,7,2 ./.:0,27,0:27:84:0|1:10099029_T_C:1260,84,0,1260,84,1260:0,0,18,9 +20 10099047 . G . . END=10099050 GT:DP:GQ:MIN_DP:PL ./.:26:63:25:0,63,945 ./.:32:84:31:0,84,1260 +20 10099051 . C . . . GT:DP:GQ:MIN_DP:PL ./.:26:63:25:0,63,945 ./.:31:67:31:0,67,886 +20 10099052 . G . . END=10099054 GT:DP:GQ:MIN_DP:PL ./.:26:63:25:0,63,945 ./.:32:84:31:0,84,1260 +20 10099055 . T C, . . BaseQRankSum=-1.554e+00;ClippingRankSum=0.00;DP=54;ExcessHet=3.01;MQRankSum=-4.316e+00;RAW_MQandDP=164749,54;ReadPosRankSum=-2.131e+00 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:15,8,0:23:99:0|1:10099029_T_C:285,0,673,336,697,1033:11,4,6,2 ./.:0,30,0:30:90:0|1:10099029_T_C:1350,90,0,1350,90,1350:0,0,20,10 +20 10099056 . T . . . GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:35:87:35:0,87,1305 +20 10099057 . C . . . GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:34:76:34:0,76,995 +20 10099058 . C . . END=10099059 GT:DP:GQ:MIN_DP:PL ./.:29:75:28:0,75,1125 ./.:34:87:32:0,87,1305 +20 10099060 . A . . END=10099061 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1118 ./.:34:87:32:0,87,1305 +20 10099062 . A . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1118 ./.:34:73:34:0,73,1018 +20 10099063 . G . . END=10099065 GT:DP:GQ:MIN_DP:PL ./.:30:81:29:0,81,1118 ./.:34:84:33:0,84,1260 +20 10099066 . C . . END=10099068 GT:DP:GQ:MIN_DP:PL ./.:31:90:30:0,90,1172 ./.:34:84:33:0,84,1260 +20 10099069 . A . . . GT:DP:GQ:MIN_DP:PL ./.:32:82:32:0,82,1208 ./.:36:45:36:0,45,935 +20 10099070 . G . . END=10099073 GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:37:81:36:0,81,1215 +20 10099074 . A . . END=10099078 GT:DP:GQ:MIN_DP:PL ./.:32:90:32:0,90,1350 ./.:39:72:38:0,72,1080 +20 10099079 . C T, . . BaseQRankSum=1.43;ClippingRankSum=0.00;DP=61;ExcessHet=3.01;MQRankSum=-2.821e+00;RAW_MQandDP=188962,61;ReadPosRankSum=1.97 GT:AD:DP:GQ:PGT:PID:PL:SB ./.:23,6,0:29:99:0|1:10099029_T_C:145,0,886,217,904,1120:11,12,4,2 ./.:0,31,0:31:96:0|1:10099029_T_C:1386,96,0,1386,96,1386:0,0,20,11 +20 10099080 . G . . . GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:36:72:36:0,72,1080 +20 10099081 . T . . END=10099087 GT:DP:GQ:MIN_DP:PL ./.:36:90:35:0,90,1350 ./.:39:66:37:0,66,990 +20 10099088 . C . . END=10099090 GT:DP:GQ:MIN_DP:PL ./.:37:87:37:0,87,1305 ./.:36:54:35:0,54,810 +20 10099091 . C . . . GT:DP:GQ:MIN_DP:PL ./.:39:90:39:0,90,1350 ./.:37:45:37:0,45,675 +20 10099092 . A . . END=10099094 GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:37:39:36:0,39,585 +20 10099095 . C . . END=10099096 GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:39:36:37:0,36,540 +20 10099097 . G . . . GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:41:25:41:0,25,1062 +20 10099098 . C . . . GT:DP:GQ:MIN_DP:PL ./.:40:81:39:0,81,1215 ./.:40:30:40:0,30,1027 +20 10099099 . C . . . GT:DP:GQ:MIN_DP:PL ./.:42:72:41:0,72,1080 ./.:40:6:40:0,6,1033 +20 10099100 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:72:41:0,72,1080 ./.:38:30:38:0,30,450 +20 10099101 . G . . . GT:DP:GQ:MIN_DP:PL ./.:42:72:41:0,72,1080 ./.:34:3:34:0,3,826 +20 10099102 . G . . END=10099104 GT:DP:GQ:MIN_DP:PL ./.:42:72:41:0,72,1080 ./.:38:30:36:0,30,450 +20 10099105 . T . . . GT:DP:GQ:MIN_DP:PL ./.:42:72:41:0,72,1080 ./.:39:33:38:0,33,495 +20 10099106 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:66:42:0,66,990 ./.:39:33:38:0,33,495 +20 10099107 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:66:42:0,66,990 ./.:36:0:36:0,0,787 +20 10099108 . T . . . GT:DP:GQ:MIN_DP:PL ./.:45:66:42:0,66,990 ./.:38:30:38:0,30,450 +20 10099109 . T . . . GT:DP:GQ:MIN_DP:PL ./.:48:72:47:0,72,1080 ./.:38:30:38:0,30,450 +20 10099110 . G . . . GT:DP:GQ:MIN_DP:PL ./.:48:72:47:0,72,1080 ./.:36:0:36:0,0,675 +20 10099111 . T TTTTGTTTG, . . BaseQRankSum=-1.207e+00;ClippingRankSum=0.00;DP=70;ExcessHet=3.01;MQRankSum=-4.071e+00;RAW_MQandDP=209146,70;ReadPosRankSum=-1.200e-01 GT:AD:DP:GQ:PL:SB ./.:22,13,0:35:99:694,0,802,763,859,1622:13,9,7,6 ./.:0,23,0:23:72:1041,72,0,1042,72,1042:0,0,12,11 +20 10099112 . T . . . GT:DP:GQ:MIN_DP:PL ./.:55:0:55:0,0,194 ./.:38:0:38:0,0,97 +20 10099113 . T . . END=10099114 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:39:75:38:0,75,1125 +20 10099115 . G . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:36:60:36:0,60,948 +20 10099116 . T . . END=10099117 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:39:78:38:0,78,1170 +20 10099118 . T . . END=10099124 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:40:81:36:0,81,1215 +20 10099125 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:40:47:40:0,47,1084 +20 10099126 . T . . END=10099129 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:39:90:37:0,90,1350 +20 10099130 . T . . END=10099131 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:41:0:40:0,0,709 +20 10099132 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:40:99:40:0,105,1575 +20 10099133 . T . . END=10099134 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:39:93:37:0,93,1099 +20 10099135 . T . . . GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:42:87:42:0,87,1228 +20 10099136 . T . . END=10099139 GT:DP:GQ:MIN_DP:PL ./.:63:99:57:0,120,1800 ./.:41:99:40:0,117,1755 +20 10099140 . G T, . . BaseQRankSum=-1.140e-01;ClippingRankSum=0.00;DP=95;ExcessHet=3.01;MQRankSum=-2.469e+00;RAW_MQandDP=307130,95;ReadPosRankSum=0.169 GT:AD:DP:GQ:PL:SB ./.:30,32,0:62:99:1034,0,931,1122,1028,2150:18,12,22,10 ./.:0,31,0:31:93:1030,93,0,1030,93,1030:0,0,15,16 +20 10099141 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:90:40:0,90,1214 +20 10099142 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:22:41:0,22,1104 +20 10099143 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:18:39:0,18,1000 +20 10099144 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:41:39:0,41,1059 +20 10099145 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:57:40:0,57,1094 +20 10099146 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:99:40:0,117,1755 +20 10099147 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:40:52:40:0,52,1104 +20 10099148 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:84:39:0,84,1147 +20 10099149 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:50:39:0,50,1017 +20 10099150 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:37:42:37:0,42,929 +20 10099151 . T . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:78:41:0,78,1156 +20 10099152 . T . . END=10099163 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:99:39:0,105,1171 +20 10099164 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:39:86:39:0,86,1098 +20 10099165 . C . . END=10099180 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:42:99:38:0,103,1092 +20 10099181 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:41:90:41:0,90,1188 +20 10099182 . T . . END=10099189 GT:DP:GQ:MIN_DP:PL ./.:67:99:64:0,120,1800 ./.:43:99:43:0,104,1261 +20 10099190 . G T, . . BaseQRankSum=-3.400e-02;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=-1.711e+00;RAW_MQandDP=354260,104;ReadPosRankSum=-1.418e+00 GT:AD:DP:GQ:PL:SB ./.:33,32,0:65:99:1063,0,1154,1162,1251,2413:21,12,21,11 ./.:0,36,0:36:99:1147,108,0,1147,108,1147:0,0,19,17 +20 10099191 . C . . END=10099193 GT:DP:GQ:MIN_DP:PL ./.:59:99:46:0,111,1665 ./.:43:99:43:0,111,1665 +20 10099194 . A . . . GT:DP:GQ:MIN_DP:PL ./.:59:99:46:0,111,1665 ./.:44:98:44:0,98,1300 +20 10099195 . G . . END=10099215 GT:DP:GQ:MIN_DP:PL ./.:59:99:46:0,111,1665 ./.:38:99:33:0,99,947 +20 10099216 . C . . END=10099219 GT:DP:GQ:MIN_DP:PL ./.:59:99:46:0,111,1665 ./.:34:96:33:0,96,1440 +20 10099220 . A G, . . BaseQRankSum=-1.664e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.01;MQRankSum=-2.596e+00;RAW_MQandDP=261077,76;ReadPosRankSum=0.331 GT:AD:DP:GQ:PL:SB ./.:25,20,0:45:99:606,0,873,681,933,1614:15,10,11,9 ./.:0,30,0:30:89:924,89,0,924,89,924:0,0,15,15 +20 10099221 . T . . END=10099223 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:34:96:33:0,96,1440 +20 10099224 . A . . END=10099225 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:99:35:0,99,1485 +20 10099226 . G . . . GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:77:35:0,77,1066 +20 10099227 . C . . END=10099229 GT:DP:GQ:MIN_DP:PL ./.:44:99:42:0,102,1530 ./.:35:99:33:0,99,1017 +20 10099230 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:35:99:33:0,99,1017 +20 10099231 . T . . . GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:36:95:36:0,95,1108 +20 10099232 . C . . END=10099233 GT:DP:GQ:MIN_DP:PL ./.:41:90:41:0,90,1350 ./.:37:99:35:0,99,1080 +20 10099234 . T . . END=10099235 GT:DP:GQ:MIN_DP:PL ./.:44:87:44:0,87,1305 ./.:37:99:35:0,99,1080 +20 10099236 . T . . END=10099238 GT:DP:GQ:MIN_DP:PL ./.:41:90:39:0,90,1350 ./.:37:99:35:0,99,1080 +20 10099239 . C . . END=10099241 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:37:99:35:0,99,1080 +20 10099242 . A . . END=10099246 GT:DP:GQ:MIN_DP:PL ./.:36:84:35:0,84,1260 ./.:35:90:32:0,90,1350 +20 10099247 . C . . END=10099248 GT:DP:GQ:MIN_DP:PL ./.:37:93:36:0,93,1395 ./.:35:90:32:0,90,1350 +20 10099249 . C . . . GT:DP:GQ:MIN_DP:PL ./.:36:87:36:0,87,1305 ./.:35:90:32:0,90,1350 +20 10099250 . G A, . . BaseQRankSum=3.17;ClippingRankSum=0.00;DP=69;ExcessHet=3.01;MQRankSum=-2.272e+00;RAW_MQandDP=119006,37;ReadPosRankSum=0.169 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:16,21,0:37:99:.:728,0,424,776,487,1263:12,4,11,10 ./.:.:35:90:32:0,90,1350,90,1350,1350 +20 10099251 . A . . END=10099252 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:35:90:32:0,90,1350 +20 10099253 . T . . END=10099256 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:87:31:0,87,1305 +20 10099257 . T . . . GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:90:32:0,90,1350 +20 10099258 . G . . END=10099260 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:32:87:32:0,87,1305 +20 10099261 . A . . END=10099264 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:34:90:33:0,90,1350 +20 10099265 . C . . END=10099269 GT:DP:GQ:MIN_DP:PL ./.:30:81:28:0,81,1132 ./.:35:99:34:0,99,1485 +20 10099270 . A C, . . BaseQRankSum=-2.866e+00;ClippingRankSum=0.00;DP=62;ExcessHet=3.01;MQRankSum=-2.691e+00;RAW_MQandDP=98268,30;ReadPosRankSum=-1.780e-01 GT:AD:DP:GQ:MIN_DP:PL:SB ./.:27,3,0:30:60:.:0,60,1084,81,1092,1113:19,8,0,3 ./.:.:34:90:32:0,90,1033,90,1033,1033 +20 10099271 . C . . . GT:DP:GQ:MIN_DP:PL ./.:31:84:31:0,84,1260 ./.:34:90:32:0,90,1033 +20 10099272 . C . . END=10099296 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:90:32:0,90,1033 +20 10099297 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10099298 . A . . END=10099303 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:93:34:0,93,1395 +20 10099304 . T . . END=10099312 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:99:33:0,99,1074 +20 10099313 . A . . END=10099314 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:83:35:0,83,1066 +20 10099315 . G . . END=10099319 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:92:35:0,92,1093 +20 10099320 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,99,1485 +20 10099321 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:77:37:0,77,1046 +20 10099322 . C . . END=10099323 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:38:99:37:0,99,1485 +20 10099324 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:88:37:0,88,1130 +20 10099325 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:99:35:0,99,1485 +20 10099326 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:71:35:0,71,1075 +20 10099327 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:94:35:0,94,1117 +20 10099328 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:99:34:0,99,1485 +20 10099329 . T . . END=10099334 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:90:34:0,90,1092 +20 10099335 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:88:35:0,88,1093 +20 10099336 . G . . END=10099343 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:90:33:0,90,1350 +20 10099344 . T . . END=10099345 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:80:32:0,80,988 +20 10099346 . G . . END=10099347 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:93:32:0,93,1395 +20 10099348 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:30:76:30:0,76,856 +20 10099349 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:31:82:31:0,82,967 +20 10099350 . T . . END=10099351 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:93:31:0,93,979 +20 10099352 . C . . END=10099354 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:99:33:0,99,1049 +20 10099355 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:86:34:0,86,1034 +20 10099356 . C . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:32:96:32:0,96,1035 +20 10099357 . C . . END=10099358 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:99:33:0,99,1047 +20 10099359 . T . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:34:91:34:0,91,1061 +20 10099360 . C . . END=10099366 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:99:33:0,99,1046 +20 10099367 . T . . END=10099375 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:35:92:31:0,92,979 +20 10099376 . C . . END=10099379 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:35:0,99,1485 +20 10099380 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:85:36:0,85,1107 +20 10099381 . C . . END=10099382 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:95:37:0,95,1138 +20 10099383 . T . . END=10099411 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:99:35:0,99,1159 +20 10099412 . C . . END=10099415 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:96:36:0,96,1440 +20 10099416 . G . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:76:36:0,76,1088 +20 10099417 . G . . END=10099429 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:33:90:32:0,90,1350 +20 10099430 . A . . END=10099432 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:36:99:36:0,102,1530 +20 10099433 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:37:92:37:0,92,1144 +20 10099434 . G . . END=10099531 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:44:99:37:0,100,1153 +20 10099532 . A . . . GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:41:84:41:0,84,1217 +20 10099533 . A . . END=10099534 GT:DP:GQ:MIN_DP:PL ./.:57:99:36:0,99,1485 ./.:41:99:40:0,111,1665 +20 10099535 . G A, . . BaseQRankSum=5.03;ClippingRankSum=0.00;DP=104;ExcessHet=3.01;MQRankSum=-1.418e+00;RAW_MQandDP=366651,104;ReadPosRankSum=-5.080e-01 GT:AD:DP:GQ:PL:SB ./.:26,39,0:65:99:1364,0,686,1442,803,2245:17,9,22,17 ./.:0,38,0:38:99:1255,114,0,1255,114,1255:0,0,18,20 +20 10099536 . T . . END=10099556 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:39:99:38:0,103,1189 +20 10099557 . G . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:38:81:38:0,81,1104 +20 10099558 . A . . END=10099562 GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:40:99:40:0,117,1755 +20 10099563 . C . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:38:88:38:0,88,1182 +20 10099564 . A . . . GT:DP:GQ:MIN_DP:PL ./.:67:99:63:0,120,1800 ./.:42:99:42:0,120,1800 +20 10099565 . C T, . . BaseQRankSum=4.60;ClippingRankSum=0.00;DP=113;ExcessHet=3.01;MQRankSum=-1.266e+00;RAW_MQandDP=401810,113;ReadPosRankSum=0.740 GT:AD:DP:GQ:PL:SB ./.:31,38,0:69:99:1375,0,994,1468,1108,2576:23,8,21,17 ./.:0,43,0:43:99:1344,128,0,1344,128,1344:0,0,19,24 +20 10099566 . T . . END=10099599 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:45:99:42:0,113,1225 +20 10099600 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:44:90:44:0,90,1228 +20 10099601 . A . . END=10099606 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:45:99:41:0,117,1755 +20 10099607 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:42:73:42:0,73,1169 +20 10099608 . A . . END=10099623 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:41:99:40:0,104,1124 +20 10099624 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:40:86:40:0,86,1120 +20 10099625 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:40:99:40:0,103,1186 +20 10099626 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:96:39:0,96,1440 +20 10099627 . A . . END=10099637 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:99:38:0,99,1222 +20 10099638 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:36:97:36:0,97,1095 +20 10099639 . A . . END=10099640 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:36:99:36:0,105,1575 +20 10099641 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:37:88:37:0,88,1087 +20 10099642 . C . . END=10099704 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:39:99:36:0,99,1087 +20 10099705 . A . . END=10099714 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:35:93:34:0,93,1395 +20 10099715 . G . . END=10099716 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:73:31:0,73,878 +20 10099717 . C . . END=10099724 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:81:31:0,81,1215 +20 10099725 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:90:33:0,90,1350 +20 10099726 . C . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:66:33:0,66,958 +20 10099727 . C . . END=10099728 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:31:81:31:0,81,1215 +20 10099729 . T . . END=10099734 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:74:30:0,74,905 +20 10099735 . T . . END=10099737 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:81:31:0,81,1215 +20 10099738 . A . . END=10099739 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:78:30:0,78,1170 +20 10099740 . C . . END=10099741 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:81:30:0,81,1215 +20 10099742 . T . . END=10099743 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:72:29:0,72,873 +20 10099744 . A . . END=10099747 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:30:81:29:0,81,1215 +20 10099748 . T . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:29:75:29:0,75,859 +20 10099749 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:31:90:31:0,90,1350 +20 10099750 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:33:81:33:0,81,985 +20 10099751 . A . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099752 . G . . . GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:32:96:32:0,96,953 +20 10099753 . C . . END=10099754 GT:DP:GQ:MIN_DP:PL ./.:77:99:66:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099755 . C T, . . BaseQRankSum=1.55;ClippingRankSum=0.00;DP=100;ExcessHet=3.01;MQRankSum=-2.200e-02;RAW_MQandDP=355010,100;ReadPosRankSum=-6.840e-01 GT:AD:DP:GQ:PL:SB ./.:33,32,0:65:99:1127,0,1148,1226,1245,2470:20,13,17,15 ./.:0,32,0:32:95:979,95,0,979,95,979:0,0,13,19 +20 10099756 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:89:34:0,89,1001 +20 10099757 . T . . END=10099760 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:90:32:0,90,1025 +20 10099761 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:33:82:33:0,82,991 +20 10099762 . G . . END=10099763 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:33:93:32:0,93,1395 +20 10099764 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:33:60:33:0,60,897 +20 10099765 . G . . END=10099768 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:93:32:0,93,1395 +20 10099769 . T . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:33:82:33:0,82,943 +20 10099770 . A . . END=10099772 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:90:33:0,90,1350 +20 10099773 . C . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:87:34:0,87,931 +20 10099774 . A . . END=10099776 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:93:35:0,93,1395 +20 10099777 . A . . END=10099780 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:37:99:36:0,99,1485 +20 10099781 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:36:96:36:0,96,1058 +20 10099782 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:99:35:0,99,1485 +20 10099783 . T . . END=10099790 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:91:34:0,91,1041 +20 10099791 . A . . END=10099792 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:37:99:36:0,99,1077 +20 10099793 . T . . END=10099797 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:93:35:0,93,1085 +20 10099798 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:89:35:0,89,1074 +20 10099799 . T . . END=10099800 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:36:93:35:0,93,1395 +20 10099801 . A . . END=10099804 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:37:99:35:0,99,1485 +20 10099805 . A . . END=10099807 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:96:34:0,96,1440 +20 10099808 . G . . END=10099809 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:99:35:0,99,1485 +20 10099810 . C . . END=10099812 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:91:34:0,91,992 +20 10099813 . C . . END=10099814 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:81:32:0,81,926 +20 10099815 . A . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099816 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:34:85:34:0,85,992 +20 10099817 . A . . END=10099820 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:99:34:0,102,1064 +20 10099821 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:84:35:0,84,1039 +20 10099822 . G . . END=10099825 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:36:99:35:0,102,1530 +20 10099826 . G . . . GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:35:76:35:0,76,1018 +20 10099827 . A . . END=10099831 GT:DP:GQ:MIN_DP:PL ./.:64:99:59:0,120,1800 ./.:37:99:36:0,102,1530 +20 10099832 . A G, . . BaseQRankSum=-4.563e+00;ClippingRankSum=0.00;DP=108;ExcessHet=3.01;MQRankSum=0.869;RAW_MQandDP=379876,108;ReadPosRankSum=0.213 GT:AD:DP:GQ:PL:SB ./.:39,33,0:72:99:1102,0,1430,1220,1530,2749:22,17,14,19 ./.:0,36,0:36:99:1112,108,0,1112,108,1112:0,0,16,20 +20 10099833 . T . . END=10099850 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:99:33:0,99,1050 +20 10099851 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:87:35:0,87,1040 +20 10099852 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099853 . G . . END=10099856 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:96:34:0,96,1440 +20 10099857 . G . . END=10099859 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:99:34:0,99,1485 +20 10099860 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:91:34:0,91,1044 +20 10099861 . G . . END=10099862 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:33:0,99,1037 +20 10099863 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:96:34:0,96,1440 +20 10099864 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:99:34:0,99,1485 +20 10099865 . T . . END=10099867 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:92:34:0,92,1059 +20 10099868 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099869 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:91:37:0,91,1121 +20 10099870 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099871 . G . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:97:37:0,97,1094 +20 10099872 . T . . END=10099881 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:99:34:0,99,996 +20 10099882 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:95:37:0,95,1132 +20 10099883 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:37:99:37:0,105,1575 +20 10099884 . A . . END=10099903 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:90:31:0,90,983 +20 10099904 . A . . END=10099906 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:99:33:0,99,1052 +20 10099907 . A . . END=10099909 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:96:32:0,96,953 +20 10099910 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:78:32:0,78,933 +20 10099911 . T . . END=10099912 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:90:33:0,90,1350 +20 10099913 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:34:60:34:0,60,980 +20 10099914 . T . . END=10099919 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:90:35:0,90,1350 +20 10099920 . T . . END=10099923 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:87:35:0,87,1305 +20 10099924 . A . . END=10099930 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:90:31:0,90,1350 +20 10099931 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:76:31:0,76,925 +20 10099932 . T . . END=10099933 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:87:31:0,87,1305 +20 10099934 . A . . END=10099936 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:90:32:0,90,1350 +20 10099937 . A . . END=10099942 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:32:81:31:0,81,1215 +20 10099943 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:78:31:0,78,1170 +20 10099944 . C . . END=10099968 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:81:29:0,81,1215 +20 10099969 . A . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:90:31:0,90,1350 +20 10099970 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:31:78:31:0,78,943 +20 10099971 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:33:93:33:0,93,1395 +20 10099972 . A . . END=10099975 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:35:99:34:0,99,1010 +20 10099976 . C . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:36:91:36:0,91,1021 +20 10099977 . T . . END=10099979 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:38:99:37:0,108,1620 +20 10099980 . T . . . GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:38:96:38:0,96,1145 +20 10099981 . T . . END=10100000 GT:DP:GQ:MIN_DP:PL ./.:85:99:73:0,120,1800 ./.:45:99:38:0,110,1155 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.combined.g.vcf.idx b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/newMQcalc.combined.g.vcf.idx new file mode 100644 index 0000000000000000000000000000000000000000..fe57e3888c15ccb97c0e27b420f1ee1c898f8f3a GIT binary patch literal 42466 zcmeIzzl&W(6bJB|O*B6=YD^;{5wTOUZ_fOlR4%)l7)(}@Y(j#_V}1Mfhvb*pBv^=w zwS|oq0h>sO#zL{M5CpA^KS04sQUnx1Fa{A7)W$P&?hSYR7yJgodH3wRb7#)XeBS)t znWO8PrdiMbmsXFDcMS%Em2)SS$0rBNYYRJ9PMe=z=?Al;)e15RJaPI8N>iEoH zZFFYg>}X}MwEF!11EYoGBl$ErI(6ci)sy4J$>quOqowA?mF--&X?@ZIgD&Ym$WKgrSs7Fp@A0rKmJ#l_V@Dh@92IOTsl2RU)T-JHj^(} z>6l{s6|EX?xUAz305Sk*PT0(V&3{#fI3 z*7DBuvntm$p1Kan9BiI0Z*;fMZMIbKypz2Ol*-sZq1{Xwt4yvCY^v5~^NLO6W7w;} zN4aF3>aT*5j7?OJjd^SebswxP*`%wc8yTBSl~tO@T1BevZ?0e!pRfMRjEwcJKQpcJ z%q%HYjkS3%EG1Ldm9fdxtH@oqnlE4fZ8rDJ8e{9aWe&#ax^8)!@u?bX$}w}XyTP&- zrqp$*uB-BjBbn~9l(CEkXA>XEdN)f}``GU!d%|N$d7g5A89GmbFB$KCmCiNzW>I(5 zWO9_JK_&#MPKqwIS(4N`(jKdFIrt9O*NaMRPt>U+qjhc)d3LVqGv$5|pYHl#P7alQ$0Fg9Zox2_f^u?#cJ_XUKtYaM%BU6s*rrD z`(2h3nW%nkb}+v(GIli?`8ZMZ(bcuPw66}7Djkf0o$bwp4|yrV*Ra2MN@aq4W9!|~ zc_x~FTDl*nwz2t@%(v|(I5$01DtN`x^J(DozI%3R{_w%s;lA0qJ@bzb_s>qvHO{+9 zZ!?d4o^1&K9du}ZW;io@gqP?hQ&PEEilVjNHu?L*uI7=cgL|jure~Q%mo%4Do(~Ei zH~v}a#!NqXc#bhA&qp@@26OmkW7B-ZKg}OZu7a_LBd5An~u$62JdW z;4Te({^cH=o;F{{H1 +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##GATKCommandLine= +##GATKCommandLine= +##GATKCommandLine= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##source=CombineGVCFs +##source=GenotypeGVCFs +##source=HaplotypeCaller +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 NA19240 +20 10000117 . C T 904.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.14;DP=107;ExcessHet=3.0103;FS=11.007;MLEAC=1;MLEAF=0.250;MQ=59.71;MQRankSum=0.913;QD=14.13;ReadPosRankSum=-2.230e-01;SOR=1.538 GT:AD:DP:GQ:PL 0/1:36,28:64:99:934,0,1248 0/0:43,0:43:99:0,109,1311 +20 10000211 . C T 940.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.87;DP=99;ExcessHet=3.0103;FS=5.587;MLEAC=1;MLEAF=0.250;MQ=59.65;MQRankSum=1.06;QD=17.74;ReadPosRankSum=0.703;SOR=0.944 GT:AD:DP:GQ:PL 0/1:26,27:53:99:970,0,906 0/0:46,0:46:99:0,115,1456 +20 10000439 . T G 3522.20 . AC=4;AF=1.00;AN=4;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.30;QD=32.92;SOR=1.380 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2833,240,0 1/1:0,27:27:80:716,80,0 +20 10000534 . T C 306.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.640e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=8.75;ReadPosRankSum=-3.830e-01;SOR=0.446 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,102,1530 0/1:19,16:35:99:336,0,521 +20 10000598 . T A 2935.20 . AC=4;AF=1.00;AN=4;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.14;QD=25.36;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1970,147,0 1/1:0,31:31:93:992,93,0 +20 10000694 . G A 1007.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.60;DP=119;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.250;MQ=48.66;MQRankSum=-5.114e+00;QD=12.28;ReadPosRankSum=0.657;SOR=0.566 GT:AD:DP:GQ:PL 0/1:45,37:82:99:1037,0,1601 0/0:37,0:37:99:0,99,1125 +20 10000758 . T A 5255.20 . AC=4;AF=1.00;AN=4;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=55.68;QD=28.73;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3867,286,0 1/1:0,47:47:99:1415,140,0 +20 10001019 . T G 649.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.541e+00;DP=97;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.250;MQ=49.49;MQRankSum=-7.498e+00;QD=9.99;ReadPosRankSum=-9.250e-01;SOR=0.665 GT:AD:DP:GQ:PL 0/1:39,26:65:99:679,0,1426 0/0:32,0:32:81:0,81,1215 +20 10001298 . T A 3837.20 . AC=4;AF=1.00;AN=4;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=56.07;QD=30.97;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2946,220,0 1/1:0,30:30:90:918,90,0 +20 10001436 . A AAGGCT 3923.16 . AC=4;AF=1.00;AN=4;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=49.80;QD=27.24;SOR=1.995 GT:AD:DP:GQ:PL 1/1:0,50:50:99:2339,156,0 1/1:0,36:36:99:1620,108,0 +20 10001474 . C T 3876.20 . AC=4;AF=1.00;AN=4;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=50.09;QD=34.61;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2669,219,0 1/1:0,39:39:99:1234,117,0 +20 10001617 . C A 1730.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.26;DP=136;ExcessHet=3.0103;FS=13.163;MLEAC=1;MLEAF=0.250;MQ=59.00;MQRankSum=1.37;QD=16.80;ReadPosRankSum=-2.800e-01;SOR=1.346 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1760,0,1781 0/0:33,0:33:90:0,90,1044 +20 10001628 . G A 5019.20 . AC=4;AF=1.00;AN=4;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.40;QD=28.20;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3927,285,0 1/1:0,37:37:99:1119,110,0 +20 10001661 . T C 5161.20 . AC=4;AF=1.00;AN=4;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=58.85;QD=25.00;SOR=0.877 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:10001661_T_C:3635,249,0 1/1:0,35:35:99:1|1:10001661_T_C:1553,105,0 +20 10001670 . T G 5258.20 . AC=4;AF=1.00;AN=4;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=58.26;QD=29.56;SOR=0.781 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:10001661_T_C:3702,253,0 1/1:0,36:36:99:1|1:10001661_T_C:1583,108,0 +20 10002058 . T G 4142.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.93;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=58.50;MQRankSum=3.07;QD=30.62;ReadPosRankSum=0.624;SOR=0.749 GT:AD:DP:GQ:PL 1/1:1,74:75:99:2992,216,0 1/1:0,36:36:99:1177,108,0 +20 10002099 . C T 1504.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-2.820e-01;ClippingRankSum=0.00;DP=101;ExcessHet=4.7712;FS=0.786;MLEAC=2;MLEAF=0.500;MQ=57.64;MQRankSum=0.00;QD=14.90;ReadPosRankSum=0.173;SOR=0.544 GT:AD:DP:GQ:PL 0/1:27,38:65:99:1223,0,844 0/1:22,14:36:99:310,0,563 +20 10002138 . C G 4087.20 . AC=4;AF=1.00;AN=4;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.89;QD=28.17;SOR=1.166 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:10002138_C_G:2472,169,0 1/1:0,37:37:99:1|1:10002138_C_G:1642,111,0 +20 10002142 . G C 4082.20 . AC=4;AF=1.00;AN=4;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.87;QD=26.80;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,52:52:99:1|1:10002138_C_G:2436,166,0 1/1:0,37:37:99:1|1:10002138_C_G:1673,114,0 +20 10002458 . G GTT,GTTT 3294.16 . AC=1,3;AF=0.250,0.750;AN=4;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,2;MLEAF=0.250,0.500;MQ=55.02;QD=26.00;SOR=1.609 GT:AD:DP:GQ:PL 2/2:0,0,6:16:86:2090,794,648,167,86,0 1/2:0,8,4:12:78:1157,165,78,207,0,120 +20 10002470 . C T 3780.20 . AC=4;AF=1.00;AN=4;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=52.65;QD=30.02;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2551,189,0 1/1:0,30:30:93:1256,93,0 +20 10002625 . G T 3696.20 . AC=4;AF=1.00;AN=4;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.37;QD=31.98;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2694,193,0 1/1:0,32:32:96:1029,96,0 +20 10003021 . C T 3213.20 . AC=4;AF=1.00;AN=4;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.30;QD=27.51;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2412,181,0 1/1:0,26:26:78:828,78,0 +20 10003358 . A C 1453.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=4.000e-03;DP=119;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.250;MQ=59.79;MQRankSum=1.01;QD=16.33;ReadPosRankSum=-1.355e+00;SOR=0.572 GT:AD:DP:GQ:PL 0/1:45,44:89:99:1483,0,1477 0/0:30,0:30:87:0,87,1305 +20 10003446 . G T 205.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-8.520e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=7.60;ReadPosRankSum=-1.061e+00;SOR=0.970 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:16,11:27:99:235,0,418 +20 10003651 . T C 4553.20 . AC=4;AF=1.00;AN=4;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.39;QD=29.11;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3649,279,0 1/1:0,30:30:90:931,90,0 +20 10003692 . A G 3520.20 . AC=4;AF=1.00;AN=4;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.62;QD=28.08;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2638,205,0 1/1:0,30:30:90:909,90,0 +20 10003832 . G A 3978.20 . AC=4;AF=1.00;AN=4;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=58.25;QD=23.23;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2734,199,0 1/1:0,41:41:99:1271,123,0 +20 10004094 . A C 3282.20 . AC=4;AF=1.00;AN=4;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=56.28;QD=32.82;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1854,157,0 1/1:0,47:47:99:1455,140,0 +20 10004147 . A G 2814.20 . AC=4;AF=1.00;AN=4;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.06;QD=32.35;SOR=1.030 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1866,156,0 1/1:0,35:35:99:975,103,0 +20 10004193 . G T 917.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-5.040e-01;DP=88;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.250;MQ=59.30;MQRankSum=3.42;QD=17.64;ReadPosRankSum=1.51;SOR=1.019 GT:AD:DP:GQ:PL 0/1:23,29:52:99:947,0,775 0/0:36,0:36:99:0,102,1152 +20 10004222 . C CA 14.97 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.335;DP=92;ExcessHet=3.9794;FS=1.494;MLEAC=2;MLEAF=0.500;MQ=60.05;MQRankSum=-2.042e+00;QD=0.38;ReadPosRankSum=1.27;SOR=0.434 GT:AD:DP:GQ:PL 0/1:31,8:39:50:50,0,923 0/0:38,0:38:0:0,0,689 +20 10004223 . A AG 172.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.803;ClippingRankSum=0.00;DP=90;ExcessHet=4.7712;FS=2.297;MLEAC=2;MLEAF=0.500;MQ=58.51;MQRankSum=1.89;QD=2.54;ReadPosRankSum=1.09;SOR=0.580 GT:AD:DP:GQ:PL 0/1:36,11:47:85:85,0,982 0/1:13,8:21:99:125,0,211 +20 10004224 . A G 124.87 . AC=1;AF=0.250;AN=4;BaseQRankSum=-5.440e-01;ClippingRankSum=0.00;DP=94;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.95;MQRankSum=0.069;QD=5.95;ReadPosRankSum=0.459;SOR=0.551 GT:AD:DP:GQ:PL 0/0:66,0:66:0:0,0,1403 0/1:11,10:21:99:151,0,199 +20 10004351 . C G 4278.20 . AC=4;AF=1.00;AN=4;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.46;QD=34.78;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2784,211,0 1/1:0,53:53:99:1521,157,0 +20 10004389 . T G 3853.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.77;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=3.502;MLEAC=4;MLEAF=1.00;MQ=58.23;MQRankSum=0.00;QD=34.40;ReadPosRankSum=1.41;SOR=0.608 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2523,187,0 1/1:1,49:50:99:1357,138,0 +20 10004610 . A C 4964.20 . AC=4;AF=1.00;AN=4;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.14;QD=29.03;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3654,267,0 1/1:0,45:45:99:1337,134,0 +20 10004725 . A G 950.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.154e+00;DP=107;ExcessHet=3.0103;FS=15.830;MLEAC=1;MLEAF=0.250;MQ=55.27;MQRankSum=3.01;QD=14.62;ReadPosRankSum=2.09;SOR=0.605 GT:AD:DP:GQ:PL 0/1:35,30:65:99:980,0,1168 0/0:42,0:42:93:0,93,1395 +20 10004769 . TAAAACTATGC T 1516.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.60;ClippingRankSum=0.00;DP=117;ExcessHet=4.7712;FS=2.783;MLEAC=2;MLEAF=0.500;MQ=54.96;MQRankSum=0.00;QD=15.80;ReadPosRankSum=1.88;SOR=1.045 GT:AD:DP:GQ:PL 0/1:37,27:64:99:1019,0,1471 0/1:18,14:32:99:535,0,1946 +20 10004874 . A C 5348.20 . AC=4;AF=1.00;AN=4;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.56;QD=30.67;SOR=0.994 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,87:87:99:1|1:10004874_A_C:3631,261,0 1/1:0,47:47:99:1|1:10004874_A_C:1744,141,0 +20 10004887 . A G 1834.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.356;ClippingRankSum=0.00;DP=133;ExcessHet=4.7712;FS=2.181;MLEAC=2;MLEAF=0.500;MQ=59.65;MQRankSum=0.00;QD=13.79;ReadPosRankSum=2.05;SOR=0.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,40:85:99:0|1:10004874_A_C:1352,0,1542 0/1:27,21:48:99:0|1:10004874_A_C:511,0,709 +20 10005010 . C T 4302.20 . AC=4;AF=1.00;AN=4;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.80;QD=26.61;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2963,217,0 1/1:0,43:43:99:1366,129,0 +20 10005427 . C T 3709.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.77;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.78;MQRankSum=0.00;QD=29.20;ReadPosRankSum=-7.250e-01;SOR=0.254 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2243,165,0 1/1:1,48:49:99:1493,136,0 +20 10005499 . A G 4700.20 . AC=4;AF=1.00;AN=4;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;QD=28.55;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,76:76:99:3082,229,0 1/1:0,52:52:99:1645,155,0 +20 10005587 . A G 1228.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-8.340e-01;DP=114;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.250;MQ=59.74;MQRankSum=-9.720e-01;QD=17.06;ReadPosRankSum=0.248;SOR=0.848 GT:AD:DP:GQ:PL 0/1:36,36:72:99:1258,0,1236 0/0:42,0:42:99:0,109,1334 +20 10005723 . A G 4501.20 . AC=4;AF=1.00;AN=4;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.86;QD=32.86;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3091,258,0 1/1:0,51:51:99:1437,152,0 +20 10006291 . G A 977.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.311;DP=121;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.250;MQ=59.28;MQRankSum=-1.081e+00;QD=11.63;ReadPosRankSum=-1.447e+00;SOR=0.659 GT:AD:DP:GQ:PL 0/1:53,31:84:99:1007,0,1905 0/0:37,0:37:99:0,99,1162 +20 10006404 . A C 3991.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.72;ClippingRankSum=0.00;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.43;MQRankSum=0.00;QD=34.42;ReadPosRankSum=-5.390e-01;SOR=0.520 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2957,228,0 1/1:1,36:37:99:1061,100,0 +20 10006682 . T A 4275.20 . AC=4;AF=1.00;AN=4;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.60;QD=28.53;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2903,219,0 1/1:0,46:46:99:1399,137,0 +20 10006819 . AAAAC A 3791.16 . AC=4;AF=1.00;AN=4;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.84;QD=27.23;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2569,176,0 1/1:0,29:29:88:1258,88,0 +20 10007043 . G A 722.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.41;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=17.61;ReadPosRankSum=0.482;SOR=1.302 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,120,1800 0/1:14,27:41:99:752,0,298 +20 10007150 . G C 868.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-2.939e+00;ClippingRankSum=0.00;DP=104;ExcessHet=4.7712;FS=1.683;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=8.43;ReadPosRankSum=-7.700e-02;SOR=0.951 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,25:63:99:0|1:10007150_G_C:698,0,1479 0/1:29,11:40:99:.:.:199,0,798 +20 10007175 . C T 1349.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.25;DP=98;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.250;MQ=59.62;MQRankSum=1.32;QD=22.12;ReadPosRankSum=-1.213e+00;SOR=0.434 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,38:61:99:1|0:10007150_G_C:1379,0,780 0/0:37,0:37:89:.:.:0,89,1076 +20 10007352 . C T 3916.20 . AC=4;AF=1.00;AN=4;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.78;QD=29.52;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2793,208,0 1/1:0,37:37:99:1150,110,0 +20 10007420 . T C 382.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-3.784e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=12.992;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=10.33;ReadPosRankSum=1.03;SOR=1.456 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,120,1800 0/1:18,19:37:99:412,0,447 +20 10007531 . A G 4150.20 . AC=4;AF=1.00;AN=4;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.84;QD=33.47;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2949,217,0 1/1:0,43:43:99:1228,127,0 +20 10007575 . C T 470.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.490e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.71;ReadPosRankSum=-8.910e-01;SOR=0.399 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,120,1800 0/1:17,20:37:99:500,0,413 +20 10007835 . T C 509.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-4.583e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=13.142;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=13.06;ReadPosRankSum=0.073;SOR=0.376 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,120,1800 0/1:15,24:39:99:539,0,382 +20 10007980 . A C 4833.20 . AC=4;AF=1.00;AN=4;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.49;QD=32.91;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3553,270,0 1/1:0,43:43:99:1307,128,0 +20 10008029 . T TA,TAA 3232.16 . AC=3,1;AF=0.750,0.250;AN=4;BaseQRankSum=0.409;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=3,1;MLEAF=0.750,0.250;MQ=60.67;MQRankSum=0.576;QD=28.35;ReadPosRankSum=-1.326e+00;SOR=0.701 GT:AD:DP:GQ:PL 1/1:3,72,0:75:99:2024,145,0,2033,222,2110 1/2:0,17,22:39:99:1244,629,524,416,0,337 +20 10008146 . TA T 3511.16 . AC=4;AF=1.00;AN=4;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.45;QD=30.80;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2179,211,0 1/1:0,44:44:99:1368,132,0 +20 10008221 . T C 4265.20 . AC=4;AF=1.00;AN=4;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.21;QD=31.31;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,80:80:99:3253,240,0 1/1:0,36:36:99:1039,106,0 +20 10008389 . A G 644.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-3.469e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.71;ReadPosRankSum=0.498;SOR=0.369 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,108,1620 0/1:26,29:55:99:674,0,697 +20 10008458 . T G 4054.20 . AC=4;AF=1.00;AN=4;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=55.83;QD=31.45;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2683,207,0 1/1:0,46:46:99:1398,138,0 +20 10008742 . G T 1257.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=3.89;ClippingRankSum=0.00;DP=84;ExcessHet=4.7712;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=47.37;MQRankSum=-1.113e+00;QD=15.33;ReadPosRankSum=0.221;SOR=0.757 GT:AD:DP:GQ:PL 0/1:23,26:49:99:744,0,580 0/1:13,20:33:99:542,0,265 +20 10008758 . C CA,CAA 1489.37 . AC=3,1;AF=0.750,0.250;AN=4;BaseQRankSum=0.130;DP=81;ExcessHet=3.0103;FS=2.124;MLEAC=3,1;MLEAF=0.750,0.250;MQ=47.46;MQRankSum=-1.168e+00;QD=22.57;ReadPosRankSum=-5.200e-02;SOR=0.324 GT:AD:DP:GQ:PL 1/1:4,31,0:35:10:721,10,0,733,102,825 1/2:0,20,11:31:99:804,284,194,434,0,396 +20 10008921 . C CA 253.40 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.610;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=56.34;MQRankSum=-1.906e+00;QD=7.45;ReadPosRankSum=0.173;SOR=0.512 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,16:34:99:0|1:10008921_C_CA:291,0,366 0/0:31,0:31:6:.:.:0,6,658 +20 10008948 . TA T 3465.16 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.994;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=54.92;MQRankSum=2.05;QD=33.27;ReadPosRankSum=0.884;SOR=0.446 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,50:51:99:1|1:10008921_C_CA:2095,107,0 1/1:0,33:33:99:.:.:1406,99,0 +20 10008952 . CACACACACACA C,CCACACACA,CCACACACACA,CCA 2983.16 . AC=1,1,1,1;AF=0.250,0.250,0.250,0.250;AN=4;BaseQRankSum=0.941;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1,1,1;MLEAF=0.250,0.250,0.250,0.250;MQ=54.55;MQRankSum=1.84;QD=31.26;ReadPosRankSum=0.716;SOR=0.487 GT:AD:DP:GQ:PL 1/3:1,14,5,11,0:34:99:1704,525,845,726,173,703,582,0,443,530,1135,744,779,607,1321 2/4:0,0,15,0,12:27:99:1315,1243,1282,505,512,439,1243,1282,512,1282,648,714,0,714,719 +20 10009227 . A G 2009.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.130e-01;ClippingRankSum=0.00;DP=103;ExcessHet=4.7712;FS=1.650;MLEAC=2;MLEAF=0.500;MQ=58.31;MQRankSum=1.43;QD=19.70;ReadPosRankSum=-1.119e+00;SOR=0.502 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,39:62:99:.:.:1398,0,740 0/1:16,24:40:99:0|1:10009227_A_G:640,0,377 +20 10009246 . A G 4316.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.56;ClippingRankSum=0.00;DP=114;ExcessHet=3.0103;FS=3.371;MLEAC=4;MLEAF=1.00;MQ=57.39;MQRankSum=0.00;QD=27.76;ReadPosRankSum=1.72;SOR=0.514 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,77:77:99:.:.:3031,231,0 1/1:1,35:36:99:1|1:10009227_A_G:1312,101,0 +20 10009400 . T A 4856.20 . AC=4;AF=1.00;AN=4;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;QD=29.09;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,74:74:99:3027,223,0 1/1:0,58:58:99:1856,174,0 +20 10009512 . C G 4619.20 . AC=4;AF=1.00;AN=4;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.11;QD=26.08;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,77:77:99:3068,231,0 1/1:0,53:53:99:1578,158,0 +20 10009719 . A G 2611.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.827e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=7.708;MLEAC=3;MLEAF=0.750;MQ=59.64;MQRankSum=0.00;QD=22.71;ReadPosRankSum=-1.459e+00;SOR=0.281 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1924,175,0 0/1:24,32:56:99:717,0,596 +20 10009795 . A G 3311.20 . AC=4;AF=1.00;AN=4;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.80;QD=33.85;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1909,141,0 1/1:0,44:44:99:1429,132,0 +20 10009842 . G GAA 531.15 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.872;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.25;MQRankSum=-6.030e-01;QD=15.62;ReadPosRankSum=1.72;SOR=0.738 GT:AD:DP:GQ:PL 0/1:19,15:34:99:570,0,690 0/0:34,0:34:54:0,54,810 +20 10009844 . G A 1954.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.05;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=56.22;MQRankSum=0.975;QD=29.61;ReadPosRankSum=-1.555e+00;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,19:35:99:0|1:10009844_G_A:690,0,586 1/1:0,31:31:93:1|1:10009844_G_A:1294,93,0 +20 10009871 . A G 2322.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-8.030e-01;DP=98;ExcessHet=3.0103;FS=5.548;MLEAC=3;MLEAF=0.750;MQ=54.54;MQRankSum=1.50;QD=31.81;ReadPosRankSum=1.54;SOR=0.820 GT:AD:DP:GQ:PGT:PID:PL 0/1:17,19:36:99:0|1:10009844_G_A:687,0,594 1/1:0,37:37:99:1|1:10009844_G_A:1665,111,0 +20 10009875 . A G,AGGGAGG 4045.20 . AC=3,1;AF=0.750,0.250;AN=4;BaseQRankSum=0.378;DP=95;ExcessHet=3.0103;FS=7.361;MLEAC=3,1;MLEAF=0.750,0.250;MQ=54.36;MQRankSum=1.36;QD=27.08;ReadPosRankSum=1.04;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 1/2:2,15,13:30:99:.:.:2407,645,533,697,0,574 1/1:0,37,0:37:99:1|1:10009844_G_A:1665,111,0,1665,111,1665 +20 10009879 . A G 3821.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.53;DP=85;ExcessHet=3.0103;FS=8.468;MLEAC=4;MLEAF=1.00;MQ=54.26;MQRankSum=1.57;QD=25.42;ReadPosRankSum=1.11;SOR=1.110 GT:AD:DP:GQ:PGT:PID:PL 1/1:2,47:49:99:.:.:2273,150,0 1/1:0,35:35:99:1|1:10009844_G_A:1575,105,0 +20 10009883 . A G 3638.20 . AC=4;AF=1.00;AN=4;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=55.07;QD=27.65;SOR=1.468 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,47:47:99:.:.:2180,147,0 1/1:0,33:33:99:1|1:10009844_G_A:1485,99,0 +20 10010393 . T G 1994.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.738e+00;ClippingRankSum=0.00;DP=118;ExcessHet=4.7712;FS=8.582;MLEAC=2;MLEAF=0.500;MQ=59.61;MQRankSum=0.00;QD=16.90;ReadPosRankSum=-3.900e-01;SOR=0.398 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1493,0,1230 0/1:18,21:39:99:530,0,466 +20 10010536 . G GA 3973.16 . AC=4;AF=1.00;AN=4;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=61.15;QD=31.04;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2500,243,0 1/1:0,49:49:99:1509,147,0 +20 10010766 . T G 3478.20 . AC=4;AF=1.00;AN=4;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;QD=33.44;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2440,199,0 1/1:0,38:38:99:1065,112,0 +20 10010832 . T C 4276.20 . AC=4;AF=1.00;AN=4;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.68;QD=29.48;SOR=1.040 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2980,226,0 1/1:0,43:43:99:1323,128,0 +20 10011075 . C T 1324.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=5.36;DP=117;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=15.95;ReadPosRankSum=-1.036e+00;SOR=0.968 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1354,0,1333 0/0:34,0:34:99:0,99,932 +20 10011309 . T C 4152.20 . AC=4;AF=1.00;AN=4;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;QD=32.19;SOR=0.740 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2721,231,0 1/1:0,52:52:99:1458,154,0 +20 10011517 . GA G 1431.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.690;ClippingRankSum=0.00;DP=135;ExcessHet=3.0103;FS=3.769;MLEAC=3;MLEAF=0.750;MQ=60.01;MQRankSum=1.80;QD=13.89;ReadPosRankSum=0.315;SOR=0.385 GT:AD:DP:GQ:PL 0/1:37,28:73:99:528,0,875 1/1:1,37:38:88:942,88,0 +20 10011666 . C T 4103.20 . AC=4;AF=1.00;AN=4;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.36;QD=30.56;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2990,220,0 1/1:0,35:35:99:1140,105,0 +20 10011939 . C T 3775.20 . AC=4;AF=1.00;AN=4;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.81;QD=33.63;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2498,184,0 1/1:0,42:42:99:1304,126,0 +20 10012021 . CA C 3352.16 . AC=4;AF=1.00;AN=4;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=58.30;QD=30.20;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2013,198,0 1/1:0,45:45:99:1375,135,0 +20 10012362 . G T,A 2483.20 . AC=3,1;AF=0.750,0.250;AN=4;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=3,1;MLEAF=0.750,0.250;MQ=57.74;QD=29.21;SOR=1.375 GT:AD:DP:GQ:PL 1/1:0,23,0:23:69:864,69,0,864,69,864 1/2:0,23,39:62:99:1646,970,901,677,0,562 +20 10012384 . T C 228.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.773e+00;DP=73;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.250;MQ=53.38;MQRankSum=-8.110e-01;QD=12.68;ReadPosRankSum=0.800;SOR=0.044 GT:AD:DP:GQ:PL 0/1:10,8:18:99:258,0,355 0/0:55,0:55:99:0,120,1800 +20 10012387 . T C 2022.20 . AC=4;AF=1.00;AN=4;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=58.34;QD=28.09;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,16:16:50:562,50,0 1/1:0,56:56:99:1487,165,0 +20 10012479 . A G 2978.20 . AC=4;AF=1.00;AN=4;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=56.26;QD=30.55;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,17:17:50:1|1:10012479_A_G:621,50,0 1/1:0,54:54:99:1|1:10012479_A_G:2384,168,0 +20 10012498 . C G 3012.20 . AC=4;AF=1.00;AN=4;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=55.17;QD=32.62;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,11:11:33:1|1:10012479_A_G:495,33,0 1/1:0,56:56:99:1|1:10012479_A_G:2544,172,0 +20 10012518 . T C 2705.20 . AC=4;AF=1.00;AN=4;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=54.11;QD=29.33;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,9:9:30:1|1:10012479_A_G:435,30,0 1/1:0,52:52:99:1|1:10012479_A_G:2297,157,0 +20 10012521 . C T 45.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.36;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=41.77;MQRankSum=-3.800e-02;QD=4.11;ReadPosRankSum=1.97;SOR=1.179 GT:AD:DP:GQ:PL 0/1:8,3:11:75:75,0,224 0/0:54,0:54:99:0,99,1485 +20 10012570 . G GCA 2627.16 . AC=4;AF=1.00;AN=4;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=51.38;QD=35.36;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,9:9:33:1|1:10012570_G_GCA:495,33,0 1/1:0,46:46:99:1|1:10012570_G_GCA:2168,147,0 +20 10012572 . GT G 2627.16 . AC=4;AF=1.00;AN=4;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=51.24;QD=34.30;SOR=1.034 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,11:11:33:1|1:10012570_G_GCA:495,33,0 1/1:0,48:48:99:1|1:10012570_G_GCA:2168,147,0 +20 10012631 . C CG 2416.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.030e+00;DP=65;ExcessHet=3.0103;FS=17.786;MLEAC=3;MLEAF=0.750;MQ=54.04;MQRankSum=-1.670e+00;QD=27.00;ReadPosRankSum=-1.813e+00;SOR=0.014 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,13:21:99:0|1:10012631_C_CG:522,0,297 1/1:0,43:43:99:1|1:10012631_C_CG:1933,132,0 +20 10012636 . G C 2458.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.71;DP=64;ExcessHet=3.0103;FS=17.784;MLEAC=3;MLEAF=0.750;MQ=54.13;MQRankSum=-1.513e+00;QD=30.82;ReadPosRankSum=-1.915e+00;SOR=0.015 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,14:22:99:0|1:10012631_C_CG:556,0,294 1/1:0,41:41:99:1|1:10012631_C_CG:1932,132,0 +20 10012714 . G C 2643.20 . AC=4;AF=1.00;AN=4;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.10;QD=33.46;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1329,105,0 1/1:0,44:44:99:1341,132,0 +20 10012751 . T C 2237.20 . AC=4;AF=1.00;AN=4;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=56.58;QD=31.07;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,30:30:89:966,89,0 1/1:0,42:42:99:1298,125,0 +20 10012969 . G A 613.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-3.050e-01;ClippingRankSum=0.00;DP=81;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.26;ReadPosRankSum=0.498;SOR=0.941 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,99,1485 0/1:18,25:43:99:643,0,410 +20 10012997 . C T 618.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.991;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.05;ReadPosRankSum=0.206;SOR=0.631 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,99,1485 0/1:19,25:44:99:648,0,454 +20 10013119 . C T 1465.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=2.72;ClippingRankSum=0.00;DP=92;ExcessHet=4.7712;FS=6.668;MLEAC=2;MLEAF=0.500;MQ=54.57;MQRankSum=0.131;QD=15.93;ReadPosRankSum=0.159;SOR=0.462 GT:AD:DP:GQ:PL 0/1:29,30:59:99:1040,0,936 0/1:15,18:33:99:454,0,354 +20 10013574 . G A 1049.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.47;DP=104;ExcessHet=3.0103;FS=7.109;MLEAC=1;MLEAF=0.250;MQ=58.06;MQRankSum=-2.710e-01;QD=15.21;ReadPosRankSum=0.706;SOR=1.675 GT:AD:DP:GQ:PL 0/1:38,31:69:99:1079,0,1301 0/0:35,0:35:99:0,105,1074 +20 10014990 . C CAT 1972.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.93;ClippingRankSum=0.00;DP=123;ExcessHet=4.7712;FS=0.730;MLEAC=2;MLEAF=0.500;MQ=60.64;MQRankSum=3.11;QD=17.93;ReadPosRankSum=0.144;SOR=0.559 GT:AD:DP:GQ:PL 0/1:38,38:76:99:1275,0,1248 0/1:12,22:34:99:735,0,363 +20 10015547 . GGGCGGAGGCGGAGGCGGA G 154.17 . AC=1;AF=0.250;AN=4;BaseQRankSum=-6.510e-01;ClippingRankSum=0.00;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.69;MQRankSum=-8.130e-01;QD=7.01;ReadPosRankSum=-4.540e-01;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/0:15,0:15:24:.:.:0,24,360 0/1:16,6:22:99:0|1:10015547_GGGCGGAGGCGGAGGCGGA_G:193,0,619 +20 10015558 . GA G 545.16 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;ClippingRankSum=0.00;DP=35;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.30;QD=19.47;ReadPosRankSum=1.42;SOR=0.446 GT:AD:DP:GQ:PGT:PID:PL ./.:6,0:6:.:.:.:0,0,0 0/1:12,16:28:99:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:581,0,362 +20 10015560 . GGCGGAGGCGGA G 542.16 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;ClippingRankSum=0.00;DP=36;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.35;QD=18.70;ReadPosRankSum=1.70;SOR=0.368 GT:AD:DP:GQ:PGT:PID:PL ./.:6,0:6:.:.:.:0,0,0 0/1:13,16:29:99:1|0:10015547_GGGCGGAGGCGGAGGCGGA_G:578,0,383 +20 10015679 . C T 381.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.79;ClippingRankSum=0.00;DP=43;ExcessHet=4.7712;FS=7.294;MLEAC=2;MLEAF=0.500;MQ=60.50;MQRankSum=0.00;QD=8.87;ReadPosRankSum=0.497;SOR=1.961 GT:AD:DP:GQ:PL 0/1:5,5:10:99:169,0,166 0/1:22,11:33:99:241,0,808 +20 10015729 . C A 570.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.28;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=10.401;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=15.41;ReadPosRankSum=-1.448e+00;SOR=0.401 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,630 0/1:13,24:37:99:600,0,373 +20 10015761 . T C 1738.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.982e+00;DP=61;ExcessHet=3.0103;FS=16.166;MLEAC=3;MLEAF=0.750;MQ=59.62;MQRankSum=1.29;QD=28.49;ReadPosRankSum=1.81;SOR=0.024 GT:AD:DP:GQ:PL 0/1:9,13:22:99:373,0,284 1/1:0,39:39:99:1395,117,0 +20 10016207 . C G 658.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.27;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=5.364;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.35;ReadPosRankSum=-1.090e-01;SOR=0.510 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1485 0/1:30,28:58:99:688,0,722 +20 10017776 . A G 411.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.641e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.11;ReadPosRankSum=0.038;SOR=0.610 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,114,1710 0/1:19,18:37:99:441,0,519 +20 10018158 . G C 3298.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=5.21;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=59.87;MQRankSum=1.12;QD=23.39;ReadPosRankSum=1.18;SOR=0.640 GT:AD:DP:GQ:PL 0/1:40,48:88:99:1668,0,1165 1/1:0,53:53:99:1660,159,0 +20 10018555 . G A 2057.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.301;ClippingRankSum=0.00;DP=137;ExcessHet=4.7712;FS=5.185;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.24;ReadPosRankSum=0.815;SOR=0.561 GT:AD:DP:GQ:PL 0/1:35,45:80:99:1596,0,1211 0/1:33,22:55:99:490,0,809 +20 10018700 . T C 530.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.659e+00;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=6.369;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.53;ReadPosRankSum=0.244;SOR=0.333 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,120,1800 0/1:23,23:46:99:560,0,626 +20 10019093 . A G 2575.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.71;ClippingRankSum=0.00;DP=118;ExcessHet=3.0103;FS=2.636;MLEAC=3;MLEAF=0.750;MQ=59.80;MQRankSum=1.07;QD=22.01;ReadPosRankSum=-2.520e-01;SOR=0.720 GT:AD:DP:GQ:PL 0/1:33,36:69:99:1273,0,1104 1/1:2,46:48:93:1332,93,0 +20 10020229 . G A 1906.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=5.79;ClippingRankSum=0.00;DP=127;ExcessHet=4.7712;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.67;MQRankSum=0.104;QD=15.01;ReadPosRankSum=0.858;SOR=0.754 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1567,0,1130 0/1:30,15:45:99:368,0,693 +20 10021946 . T A 636.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.906e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=13.54;ReadPosRankSum=2.22;SOR=0.751 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1721 0/1:21,26:47:99:666,0,522 +20 10023442 . G A 929.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.223;ClippingRankSum=0.00;DP=79;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=29.04;ReadPosRankSum=-5.460e-01;SOR=0.379 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1721 1/1:1,31:32:62:964,62,0 +20 10023689 . G A 1851.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.14;DP=119;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.250;MQ=59.77;MQRankSum=1.35;QD=23.14;ReadPosRankSum=1.16;SOR=0.549 GT:AD:DP:GQ:PL 0/1:29,51:80:99:1881,0,946 0/0:39,0:39:99:0,102,1217 +20 10024107 . C T 1693.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=5.77;DP=138;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.250;MQ=59.41;MQRankSum=-1.546e+00;QD=19.69;ReadPosRankSum=0.148;SOR=0.823 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1723,0,1086 0/0:52,0:52:96:0,96,1322 +20 10024300 . C CTT 151.18 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.45;ClippingRankSum=0.00;DP=77;ExcessHet=3.0103;FS=3.773;MLEAC=1;MLEAF=0.250;MQ=54.80;MQRankSum=0.00;QD=13.74;ReadPosRankSum=-1.073e+00;SOR=0.208 GT:AD:DP:GQ:PL 0/1:3,8:18:99:103,0,137 0/0:7,0:12:20:0,20,115 +20 10024388 . C T 321.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-9.240e-01;ClippingRankSum=0.00;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.90;ReadPosRankSum=0.267;SOR=0.527 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,105,1509 0/1:13,14:27:99:351,0,344 +20 10024950 . G T 920.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.081;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=7.110;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=22.44;ReadPosRankSum=0.132;SOR=1.770 GT:AD:DP:GQ:PGT:PID:PL 0/0:39,0:39:99:.:.:0,105,1509 0/1:17,24:41:99:0|1:10024950_G_T:950,0,913 +20 10024951 . G T 920.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.14;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=7.110;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=22.44;ReadPosRankSum=-8.000e-02;SOR=1.770 GT:AD:DP:GQ:PGT:PID:PL 0/0:39,0:39:99:.:.:0,105,1509 0/1:17,24:41:99:0|1:10024950_G_T:950,0,913 +20 10026357 . T C 1660.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-6.420e-01;ClippingRankSum=0.00;DP=102;ExcessHet=4.7712;FS=11.376;MLEAC=2;MLEAF=0.500;MQ=59.04;MQRankSum=0.00;QD=16.44;ReadPosRankSum=1.62;SOR=0.779 GT:AD:DP:GQ:PL 0/1:28,35:63:99:1195,0,932 0/1:19,19:38:99:494,0,521 +20 10026794 . C T 1685.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=2.83;ClippingRankSum=0.00;DP=104;ExcessHet=4.7712;FS=0.732;MLEAC=2;MLEAF=0.500;MQ=59.78;MQRankSum=0.00;QD=16.36;ReadPosRankSum=-5.330e-01;SOR=0.783 GT:AD:DP:GQ:PL 0/1:19,33:52:99:1113,0,529 0/1:27,24:51:99:601,0,657 +20 10027234 . A ATTAG 3086.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-4.060e-01;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=1.661;MLEAC=3;MLEAF=0.750;MQ=58.61;MQRankSum=0.375;QD=28.06;ReadPosRankSum=0.211;SOR=0.849 GT:AD:DP:GQ:PL 0/1:34,35:69:99:1358,0,1964 1/1:1,40:41:65:1767,65,0 +20 10027868 . A G 2666.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-4.141e+00;ClippingRankSum=0.00;DP=134;ExcessHet=4.7712;FS=6.535;MLEAC=2;MLEAF=0.500;MQ=59.66;MQRankSum=0.032;QD=20.20;ReadPosRankSum=1.87;SOR=0.956 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,45:89:99:0|1:10027868_A_G:1768,0,3201 0/1:19,24:43:99:0|1:10027868_A_G:927,0,1091 +20 10027872 . A G 2651.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-8.550e-01;ClippingRankSum=0.00;DP=129;ExcessHet=4.7712;FS=9.561;MLEAC=2;MLEAF=0.500;MQ=59.64;MQRankSum=0.101;QD=20.88;ReadPosRankSum=1.05;SOR=0.897 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,45:85:99:0|1:10027868_A_G:1753,0,3136 0/1:18,24:42:99:0|1:10027868_A_G:927,0,1091 +20 10028302 . G T 604.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.50;ClippingRankSum=0.00;DP=104;ExcessHet=3.0103;FS=13.880;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=0.800;SOR=2.280 GT:AD:DP:GQ:PGT:PID:PL 0/0:55,0:55:99:.:.:0,120,1800 0/1:30,18:48:99:0|1:10028302_G_T:634,0,1476 +20 10028316 . C T 591.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.911;ClippingRankSum=0.00;DP=98;ExcessHet=3.0103;FS=6.822;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.08;ReadPosRankSum=-7.190e-01;SOR=1.715 GT:AD:DP:GQ:PGT:PID:PL 0/0:55,0:55:99:.:.:0,120,1800 0/1:25,17:42:99:0|1:10028302_G_T:621,0,1379 +20 10028725 . A G 437.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.165e+00;ClippingRankSum=0.00;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.14;ReadPosRankSum=0.184;SOR=0.892 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 0/1:17,19:36:99:467,0,436 +20 10028867 . A ATG 1690.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=-6.100e-02;ClippingRankSum=0.00;DP=128;ExcessHet=4.7712;FS=3.716;MLEAC=2;MLEAF=0.500;MQ=60.66;MQRankSum=2.71;QD=16.41;ReadPosRankSum=0.364;SOR=0.408 GT:AD:DP:GQ:PL 0/1:32,39:71:99:1144,0,916 0/1:13,19:32:99:584,0,361 +20 10029104 . G A 1312.42 . AC=2;AF=0.500;AN=4;DP=103;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.52;SOR=0.739 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,120,1800 1/1:0,43:43:99:1347,128,0 +20 10030188 . T A 1786.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.36;ClippingRankSum=0.00;DP=113;ExcessHet=4.7712;FS=4.632;MLEAC=2;MLEAF=0.500;MQ=59.80;MQRankSum=0.00;QD=15.95;ReadPosRankSum=0.917;SOR=0.650 GT:AD:DP:GQ:PL 0/1:42,39:81:99:1401,0,1524 0/1:16,15:31:99:414,0,398 +20 10030452 . G A 738.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.085e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=2.968;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=18.45;ReadPosRankSum=-4.040e-01;SOR=0.339 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,103,1575 0/1:12,28:40:99:768,0,241 +20 10030931 . C A 541.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.73;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=6.218;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=10.21;ReadPosRankSum=-2.630e-01;SOR=1.773 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,114,1710 0/1:31,22:53:99:571,0,659 +20 10031254 . A AT 2046.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.497;ClippingRankSum=0.00;DP=131;ExcessHet=4.7712;FS=8.195;MLEAC=2;MLEAF=0.500;MQ=59.85;MQRankSum=0.017;QD=16.11;ReadPosRankSum=0.495;SOR=0.286 GT:AD:DP:GQ:PL 0/1:38,47:85:99:1501,0,1159 0/1:23,19:42:99:583,0,725 +20 10031342 . G A 2454.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=3.43;ClippingRankSum=0.00;DP=138;ExcessHet=4.7712;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.83;MQRankSum=0.00;QD=17.79;ReadPosRankSum=0.857;SOR=0.722 GT:AD:DP:GQ:PL 0/1:41,52:93:99:1863,0,1375 0/1:22,23:45:99:620,0,534 +20 10031798 . G A 5354.20 . AC=4;AF=1.00;AN=4;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.70;QD=29.27;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,104:104:99:4325,313,0 1/1:0,34:34:99:1056,102,0 +20 10031827 . C T 2321.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=3.55;ClippingRankSum=0.00;DP=140;ExcessHet=4.7712;FS=5.086;MLEAC=2;MLEAF=0.500;MQ=59.87;MQRankSum=0.00;QD=16.70;ReadPosRankSum=-6.750e-01;SOR=0.563 GT:AD:DP:GQ:PL 0/1:52,56:108:99:2033,0,1798 0/1:18,13:31:99:317,0,456 +20 10032094 . G A 1897.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=5.49;ClippingRankSum=0.00;DP=132;ExcessHet=4.7712;FS=9.336;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.48;ReadPosRankSum=0.092;SOR=0.468 GT:AD:DP:GQ:PL 0/1:47,36:83:99:1249,0,1497 0/1:21,27:48:99:677,0,458 +20 10032413 . T G 1434.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-2.742e+00;ClippingRankSum=0.00;DP=116;ExcessHet=4.7712;FS=8.785;MLEAC=2;MLEAF=0.500;MQ=59.68;MQRankSum=0.00;QD=12.47;ReadPosRankSum=-1.110e-01;SOR=1.453 GT:AD:DP:GQ:PL 0/1:35,31:66:99:898,0,1277 0/1:23,26:49:99:565,0,554 +20 10032882 . A T 2507.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.280e-01;ClippingRankSum=0.00;DP=119;ExcessHet=3.0103;FS=9.634;MLEAC=3;MLEAF=0.750;MQ=59.81;MQRankSum=0.00;QD=21.43;ReadPosRankSum=0.626;SOR=0.225 GT:AD:DP:GQ:PL 0/1:39,36:75:99:1231,0,1406 1/1:1,41:42:93:1306,93,0 +20 10032972 . C CAT 3065.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.540e-01;DP=109;ExcessHet=3.0103;FS=2.753;MLEAC=3;MLEAF=0.750;MQ=59.89;MQRankSum=-1.017e+00;QD=28.92;ReadPosRankSum=-1.232e+00;SOR=0.921 GT:AD:DP:GQ:PL 0/1:33,30:63:99:1160,0,1477 1/1:0,43:43:99:1944,132,0 +20 10034306 . T C 1268.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-2.200e-01;ClippingRankSum=0.00;DP=107;ExcessHet=4.7712;FS=2.552;MLEAC=2;MLEAF=0.500;MQ=59.61;MQRankSum=1.15;QD=12.08;ReadPosRankSum=0.885;SOR=1.023 GT:AD:DP:GQ:PL 0/1:46,29:75:99:811,0,1593 0/1:11,19:30:99:486,0,219 +20 10034425 . C T 530.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.76;ClippingRankSum=0.00;DP=87;ExcessHet=3.0103;FS=5.760;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.57;ReadPosRankSum=-8.950e-01;SOR=0.499 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 0/1:10,22:32:99:560,0,175 +20 10036930 . CGATAGCCCTAGCCCTAGATA C 1523.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.200;ClippingRankSum=0.00;DP=129;ExcessHet=4.7712;FS=10.062;MLEAC=2;MLEAF=0.500;MQ=55.99;MQRankSum=0.00;QD=15.08;ReadPosRankSum=0.460;SOR=0.213 GT:AD:DP:GQ:PL 0/1:39,29:68:99:1074,0,5571 0/1:20,13:33:99:487,0,3108 +20 10037037 . C T 1435.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.50;DP=116;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.250;MQ=60.17;MQRankSum=-1.193e+00;QD=17.72;ReadPosRankSum=-1.609e+00;SOR=0.495 GT:AD:DP:GQ:PL 0/1:39,42:81:99:1465,0,1124 0/0:35,0:35:99:0,102,1530 +20 10037110 . T TGATA 4473.16 . AC=4;AF=1.00;AN=4;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=57.85;QD=35.92;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2818,189,0 1/1:0,36:36:99:1691,114,0 +20 10037144 . TGATA T,TGATAGATA,TGATAGATAGATA 3043.16 . AC=1,1,2;AF=0.250,0.250,0.500;AN=4;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1,2;MLEAF=0.250,0.250,0.500;MQ=54.72;QD=29.63;SOR=1.000 GT:AD:DP:GQ:PL 3/3:0,0,0,36:36:99:1861,1864,1866,1864,1866,1866,127,129,129,0 1/2:0,18,11,0:29:99:1218,461,407,756,0,724,1218,462,757,1218 +20 10037709 . A T 1463.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.120;ClippingRankSum=0.00;DP=106;ExcessHet=4.7712;FS=2.521;MLEAC=2;MLEAF=0.500;MQ=59.78;MQRankSum=0.934;QD=13.81;ReadPosRankSum=1.15;SOR=0.751 GT:AD:DP:GQ:PL 0/1:39,32:71:99:1032,0,1354 0/1:17,18:35:99:460,0,435 +20 10038534 . CTTGT C 975.15 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.936e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.250;MQ=60.18;MQRankSum=0.962;QD=20.32;ReadPosRankSum=0.880;SOR=0.717 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 0/1:22,26:48:99:1014,0,1079 +20 10038640 . A C 549.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.630e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=22.369;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.20;ReadPosRankSum=0.213;SOR=2.700 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 0/1:23,22:45:99:579,0,582 +20 10038994 . C T 494.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.96;ClippingRankSum=0.00;DP=92;ExcessHet=3.0103;FS=7.360;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=13.00;ReadPosRankSum=-2.350e-01;SOR=0.315 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 0/1:19,19:38:99:524,0,452 +20 10039371 . T G 1735.44 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.667e+00;ClippingRankSum=0.00;DP=119;ExcessHet=4.7712;FS=11.712;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=0.391;SOR=0.841 GT:AD:DP:GQ:PL 0/1:34,40:74:99:1353,0,1194 0/1:28,17:45:99:411,0,777 +20 10040772 . C CT,CTT 2634.15 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=0.374;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=3.572;MLEAC=2,1;MLEAF=0.500,0.250;MQ=54.67;MQRankSum=0.00;QD=24.62;ReadPosRankSum=-4.270e-01;SOR=0.542 GT:AD:DP:GQ:PL 1/1:0,70,0:70:99:2033,210,0,2034,210,2034 0/2:17,0,20:37:99:640,692,1318,0,626,563 +20 10040812 . AT A 2973.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.905;ClippingRankSum=0.00;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=54.18;MQRankSum=0.00;QD=27.53;ReadPosRankSum=0.031;SOR=0.674 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2645,214,0 0/1:21,16:37:99:367,0,494 +20 10040821 . T A 1170.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.100e-02;ClippingRankSum=0.00;DP=119;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.250;MQ=54.02;MQRankSum=0.00;QD=15.00;ReadPosRankSum=-3.470e-01;SOR=0.671 GT:AD:DP:GQ:PL 0/1:38,40:78:99:1200,0,1099 0/0:39,0:40:99:0,117,1322 +20 10041304 . C T 3155.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=3.22;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=0.983;MLEAC=3;MLEAF=0.750;MQ=59.59;MQRankSum=0.00;QD=31.24;ReadPosRankSum=0.714;SOR=0.532 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2794,204,0 0/1:18,15:33:99:391,0,405 +20 10041701 . A ATATG 1694.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.848;ClippingRankSum=0.00;DP=103;ExcessHet=4.7712;FS=4.019;MLEAC=2;MLEAF=0.500;MQ=59.38;MQRankSum=0.959;QD=22.59;ReadPosRankSum=1.12;SOR=0.298 GT:AD:DP:GQ:PL 0/1:8,48:56:58:1441,0,58 0/1:8,11:19:99:291,0,568 +20 10042319 . C T 3220.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.66;ClippingRankSum=0.00;DP=108;ExcessHet=3.0103;FS=8.399;MLEAC=3;MLEAF=0.750;MQ=59.40;MQRankSum=0.00;QD=29.82;ReadPosRankSum=-8.950e-01;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2687,199,0 0/1:21,21:42:99:563,0,514 +20 10042761 . A G 4313.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-2.960e-01;ClippingRankSum=0.00;DP=143;ExcessHet=3.0103;FS=0.870;MLEAC=3;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=30.16;ReadPosRankSum=-7.100e-02;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3582,272,0 0/1:23,29:52:99:761,0,602 +20 10042829 . A G 3834.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.650e-01;ClippingRankSum=0.00;DP=134;ExcessHet=3.0103;FS=0.852;MLEAC=3;MLEAF=0.750;MQ=59.86;MQRankSum=0.00;QD=28.83;ReadPosRankSum=-8.090e-01;SOR=0.556 GT:AD:DP:GQ:PL 1/1:0,78:78:99:3084,235,0 0/1:24,31:55:99:780,0,566 +20 10043002 . A T 1286.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.99;DP=126;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.96;ReadPosRankSum=-3.500e-02;SOR=0.434 GT:AD:DP:GQ:PL 0/1:48,38:86:99:1316,0,1659 0/0:40,0:40:99:0,109,1146 +20 10044650 . A G 622.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-5.504e+00;ClippingRankSum=0.00;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.52;ReadPosRankSum=0.426;SOR=0.636 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,104,1655 0/1:24,30:54:99:652,0,625 +20 10044849 . A G 2085.42 . AC=2;AF=0.500;AN=4;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.61;QD=28.76;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2120,177,0 0/0:39,0:39:99:0,105,1212 +20 10045078 . G T 3265.42 . AC=2;AF=0.500;AN=4;DP=120;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.73;QD=29.94;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3300,244,0 0/0:39,0:39:99:0,105,1212 +20 10045642 . G C 3410.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-4.850e-01;ClippingRankSum=0.00;DP=112;ExcessHet=3.0103;FS=2.145;MLEAC=3;MLEAF=0.750;MQ=59.63;MQRankSum=0.00;QD=30.45;ReadPosRankSum=-3.380e-01;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3136,243,0 0/1:18,13:31:99:304,0,478 +20 10046178 . AAGAAAGAAAG A 4025.16 . AC=4;AF=1.00;AN=4;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=54.33;QD=31.54;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,50:50:99:2197,152,0 1/1:0,42:42:99:1864,127,0 +20 10046537 . A G 818.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-3.909e+00;DP=92;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.250;MQ=54.50;MQRankSum=0.395;QD=14.35;ReadPosRankSum=0.727;SOR=1.262 GT:AD:DP:GQ:PL 0/1:28,29:57:99:848,0,902 0/0:35,0:35:99:0,99,1485 +20 10046828 . T C 958.42 . AC=2;AF=0.500;AN=4;DP=75;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=29.95;SOR=0.818 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,101,1614 1/1:0,32:32:96:993,96,0 +20 10047038 . T C 523.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.461e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.88;ReadPosRankSum=0.254;SOR=0.929 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,101,1614 0/1:11,20:31:99:553,0,276 +20 10047435 . G A 499.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.75;ClippingRankSum=0.00;DP=85;ExcessHet=3.0103;FS=6.684;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=-5.400e-01;SOR=0.701 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,101,1614 0/1:20,21:41:99:529,0,417 +20 10048393 . C G 1574.42 . AC=2;AF=0.500;AN=4;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=28.86;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/0:43,0:43:99:.:.:0,101,1614 1/1:0,43:43:99:1|1:10048393_C_G:1609,132,0 +20 10048400 . C T 437.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.20;ClippingRankSum=0.00;DP=92;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=9.72;ReadPosRankSum=1.71;SOR=1.149 GT:AD:DP:GQ:PGT:PID:PL 0/0:43,0:43:99:.:.:0,101,1614 0/1:24,21:45:99:0|1:10048393_C_G:467,0,468 +20 10049120 . A G 537.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.571;ClippingRankSum=0.00;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.28;ReadPosRankSum=-1.548e+00;SOR=0.569 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,101,1614 0/1:11,22:33:99:567,0,223 +20 10050667 . C T 1150.42 . AC=2;AF=0.500;AN=4;DP=93;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.27;SOR=0.798 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,120,1800 1/1:0,38:38:99:1185,114,0 +20 10050828 . T C 2381.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-2.704e+00;DP=123;ExcessHet=3.0103;FS=3.363;MLEAC=3;MLEAF=0.750;MQ=59.81;MQRankSum=0.892;QD=19.52;ReadPosRankSum=-1.400e-01;SOR=0.489 GT:AD:DP:GQ:PL 0/1:49,37:86:99:1256,0,1768 1/1:0,36:36:99:1155,108,0 +20 10051376 . A G 484.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-3.580e-01;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=-1.189e+00;SOR=1.402 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,99,1485 0/1:18,20:38:99:514,0,430 +20 10051448 . T C 2123.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-5.010e-01;DP=101;ExcessHet=3.0103;FS=7.325;MLEAC=3;MLEAF=0.750;MQ=59.59;MQRankSum=-1.404e+00;QD=21.02;ReadPosRankSum=-7.050e-01;SOR=0.267 GT:AD:DP:GQ:PL 0/1:35,35:70:99:1163,0,1150 1/1:0,31:31:93:990,93,0 +20 10051695 . G A 637.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.95;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=5.972;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=13.85;ReadPosRankSum=-2.980e-01;SOR=0.681 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,114,1800 0/1:21,25:46:99:667,0,425 +20 10052688 . C A 1061.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.180;DP=116;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.250;MQ=59.76;MQRankSum=0.870;QD=13.78;ReadPosRankSum=1.44;SOR=0.379 GT:AD:DP:GQ:PL 0/1:45,32:77:99:1091,0,1645 0/0:39,0:39:99:0,102,1246 +20 10053023 . T G 389.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.451e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.0103;FS=3.722;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.41;ReadPosRankSum=-1.276e+00;SOR=0.395 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 0/1:10,17:27:99:419,0,247 +20 10053267 . G A 353.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.321;ClippingRankSum=0.00;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=10.09;ReadPosRankSum=0.409;SOR=0.829 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 0/1:19,16:35:99:383,0,480 +20 10053395 . G C 1534.42 . AC=2;AF=0.500;AN=4;DP=95;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=26.92;SOR=0.800 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 1/1:0,57:57:99:1569,169,0 +20 10053891 . C G 1398.42 . AC=2;AF=0.500;AN=4;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=29.75;SOR=1.022 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 1/1:0,47:47:99:1433,140,0 +20 10055046 . A G 500.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-5.250e-01;ClippingRankSum=0.00;DP=77;ExcessHet=3.0103;FS=6.884;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.83;ReadPosRankSum=1.50;SOR=1.052 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 0/1:18,21:39:99:530,0,438 +20 10055829 . T C 316.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.257e+00;ClippingRankSum=0.00;DP=69;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=9.88;ReadPosRankSum=0.424;SOR=0.944 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 0/1:17,15:32:99:346,0,466 +20 10056026 . C G 434.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.78;ClippingRankSum=0.00;DP=74;ExcessHet=3.0103;FS=7.360;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.73;ReadPosRankSum=-7.530e-01;SOR=0.332 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1485 0/1:18,19:37:99:464,0,405 +20 10056782 . A C 632.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.811e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=6.477;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.70;ReadPosRankSum=2.51;SOR=0.837 GT:AD:DP:GQ:PGT:PID:PL 0/0:36,0:36:99:.:.:0,99,1485 0/1:26,17:43:99:0|1:10056782_A_C:662,0,1496 +20 10056784 . A C 632.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-9.100e-01;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.70;ReadPosRankSum=2.15;SOR=0.676 GT:AD:DP:GQ:PGT:PID:PL 0/0:36,0:36:99:.:.:0,99,1485 0/1:25,18:43:99:0|1:10056782_A_C:662,0,1496 +20 10058022 . T C 974.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.346e+00;DP=99;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.250;MQ=59.11;MQRankSum=0.466;QD=14.33;ReadPosRankSum=0.018;SOR=0.849 GT:AD:DP:GQ:PL 0/1:36,32:68:99:1004,0,1261 0/0:31,0:31:90:0,90,1350 +20 10058248 . G A 863.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.77;ClippingRankSum=0.00;DP=77;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=27.85;ReadPosRankSum=-6.060e-01;SOR=0.223 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 1/1:1,30:31:82:898,82,0 +20 10061579 . T C 361.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.610;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=11.29;ReadPosRankSum=0.844;SOR=0.512 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 0/1:17,15:32:99:391,0,454 +20 10061632 . C T 1071.42 . AC=2;AF=0.500;AN=4;DP=80;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=31.51;SOR=0.811 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 1/1:0,34:34:99:1106,102,0 +20 10062151 . A G 376.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.656e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=6.60;ReadPosRankSum=-6.130e-01;SOR=0.688 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 0/1:38,19:57:99:406,0,1012 +20 10062329 . T C 590.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.037e+00;ClippingRankSum=0.00;DP=87;ExcessHet=3.0103;FS=7.273;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.75;ReadPosRankSum=0.337;SOR=0.288 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 0/1:15,25:40:99:620,0,364 +20 10062531 . A G 283.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.520e-01;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=6.44;ReadPosRankSum=0.447;SOR=1.387 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 0/1:29,15:44:99:313,0,725 +20 10062696 . T C 638.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.953;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=14.18;ReadPosRankSum=-1.579e+00;SOR=0.638 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 0/1:18,27:45:99:668,0,404 +20 10062922 . T C 882.42 . AC=2;AF=0.500;AN=4;DP=77;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=28.47;SOR=1.044 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1575 1/1:0,31:31:92:917,92,0 +20 10062935 . CA C,CAA 230.48 . AC=1,1;AF=0.250,0.250;AN=4;BaseQRankSum=1.34;ClippingRankSum=0.00;DP=111;ExcessHet=4.7712;FS=2.595;MLEAC=1,1;MLEAF=0.250,0.250;MQ=56.17;MQRankSum=1.71;QD=5.49;ReadPosRankSum=-8.900e-02;SOR=1.179 GT:AD:DP:GQ:PL 0/2:5,4,10:23:16:130,115,505,0,16,101 0/1:13,10,0:23:99:138,0,197,177,227,404 +20 10064261 . T G 542.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.993;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.05;ReadPosRankSum=-1.260e+00;SOR=0.960 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1575 0/1:22,23:45:99:572,0,499 +20 10064306 . T A 1476.42 . AC=2;AF=0.500;AN=4;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.76;SOR=0.963 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1575 1/1:0,48:48:99:1511,144,0 +20 10064529 . A G 1014.42 . AC=2;AF=0.500;AN=4;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=26.01;SOR=0.968 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1575 1/1:0,39:39:99:1049,115,0 +20 10065383 . T G 312.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-4.436e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=10.07;ReadPosRankSum=-7.660e-01;SOR=0.569 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1575 0/1:15,16:31:99:342,0,417 +20 10065517 . T C 243.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.690;ClippingRankSum=0.00;DP=73;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=8.11;ReadPosRankSum=-1.828e+00;SOR=1.445 GT:AD:DP:GQ:PGT:PID:PL 0/0:42,0:42:99:.:.:0,105,1575 0/1:18,12:30:99:0|1:10065517_T_C:273,0,706 +20 10065525 . G A 451.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.814;ClippingRankSum=0.00;DP=70;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.71;ReadPosRankSum=0.551;SOR=0.557 GT:AD:DP:GQ:PGT:PID:PL 0/0:42,0:42:99:.:.:0,105,1575 0/1:10,17:27:99:1|0:10065517_T_C:481,0,391 +20 10065779 . G GTT 651.82 . AC=2;AF=0.500;AN=4;DP=78;ExcessHet=1.5490;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.32;QD=29.41;SOR=0.836 GT:AD:DP:GQ:PL 0/0:52,0:52:0:0,0,1441 1/1:0,7:13:81:637,81,0 +20 10067049 . TAAAAAAA T,TAAAA 1186.16 . AC=3,1;AF=0.750,0.250;AN=4;BaseQRankSum=0.177;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=2.372;MLEAC=2,1;MLEAF=0.500,0.250;MQ=55.98;MQRankSum=0.00;QD=31.11;ReadPosRankSum=-1.322e+00;SOR=0.751 GT:AD:DP:GQ:PL 1/1:2,9,0:22:29:545,29,0,337,64,521 1/2:1,8,9:18:99:571,324,502,248,0,237 +20 10067090 . C A 2975.20 . AC=4;AF=1.00;AN=4;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=56.77;QD=34.66;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2033,164,0 1/1:0,30:30:90:969,90,0 +20 10067264 . G A 3240.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.369;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=3.400;MLEAC=3;MLEAF=0.750;MQ=59.56;MQRankSum=0.00;QD=30.57;ReadPosRankSum=-4.930e-01;SOR=0.518 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2951,219,0 0/1:20,13:33:99:319,0,534 +20 10067722 . A C 3333.20 . AC=4;AF=1.00;AN=4;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;QD=29.40;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,54:54:99:2175,163,0 1/1:0,38:38:99:1185,114,0 +20 10068158 . GTGTATATATATA G 65.15 . AC=1;AF=0.250;AN=4;BaseQRankSum=-6.520e-01;DP=60;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.250;MQ=56.74;MQRankSum=0.328;QD=9.31;ReadPosRankSum=0.524;SOR=0.061 GT:AD:DP:GQ:PL 0/1:3,4:7:57:104,0,57 0/0:31,0:31:54:0,54,810 +20 10068166 . ATATATG A,* 861.20 . AC=1,2;AF=0.250,0.500;AN=4;BaseQRankSum=-9.800e-01;ClippingRankSum=0.00;DP=53;ExcessHet=3.0103;FS=8.113;MLEAC=1,2;MLEAF=0.250,0.500;MQ=59.33;MQRankSum=0.00;QD=36.76;ReadPosRankSum=-6.600e-01;SOR=1.245 GT:AD:DP:GQ:PGT:PID:PL 2/2:0,0,4:6:49:.:.:682,454,419,49,55,0 0/1:2,9,0:11:22:0|1:10068166_ATATATG_A:218,0,22,224,49,273 +20 10068981 . G A 3350.20 . AC=4;AF=1.00;AN=4;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;QD=30.54;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2532,184,0 1/1:0,26:26:78:845,78,0 +20 10070602 . T C 3165.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.081e+00;ClippingRankSum=0.00;DP=112;ExcessHet=3.0103;FS=4.673;MLEAC=3;MLEAF=0.750;MQ=59.17;MQRankSum=0.00;QD=28.26;ReadPosRankSum=-6.890e-01;SOR=0.377 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2720,216,0 0/1:21,19:40:99:475,0,592 +20 10070936 . T A 4355.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.071e+00;ClippingRankSum=0.00;DP=122;ExcessHet=3.0103;FS=1.991;MLEAC=3;MLEAF=0.750;MQ=59.18;MQRankSum=0.00;QD=21.53;ReadPosRankSum=0.014;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:10070936_T_A:3660,247,0 0/1:21,19:40:99:0|1:10070936_T_A:725,0,1215 +20 10070938 . G GA 4380.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-8.020e-01;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=0.933;MLEAC=3;MLEAF=0.750;MQ=59.40;MQRankSum=0.00;QD=34.87;ReadPosRankSum=-5.400e-01;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,79:79:99:1|1:10070936_T_A:3694,250,0 0/1:19,19:38:99:0|1:10070936_T_A:725,0,1215 +20 10071135 . C T 4740.20 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.77;ClippingRankSum=0.00;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.46;MQRankSum=0.00;QD=31.04;ReadPosRankSum=2.25;SOR=0.354 GT:AD:DP:GQ:PL 1/1:0,79:79:99:3286,238,0 1/1:1,48:49:99:1481,137,0 +20 10071187 . G A 4028.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.97;ClippingRankSum=0.00;DP=128;ExcessHet=3.0103;FS=12.768;MLEAC=3;MLEAF=0.750;MQ=59.82;MQRankSum=0.00;QD=31.72;ReadPosRankSum=-2.080e-01;SOR=1.126 GT:AD:DP:GQ:PL 1/1:0,82:82:99:3439,246,0 0/1:21,24:45:99:619,0,444 +20 10071890 . T C 2461.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-4.435e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.0103;FS=0.935;MLEAC=3;MLEAF=0.750;MQ=59.81;MQRankSum=0.00;QD=24.61;ReadPosRankSum=0.584;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2003,171,0 0/1:20,23:43:99:488,0,521 +20 10072505 . A G 2581.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.080e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.0103;FS=3.410;MLEAC=3;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=25.06;ReadPosRankSum=0.816;SOR=0.569 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2128,191,0 0/1:19,20:39:99:483,0,448 +20 10074187 . A G 3794.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-6.360e-01;ClippingRankSum=0.00;DP=123;ExcessHet=3.0103;FS=2.196;MLEAC=3;MLEAF=0.750;MQ=59.44;MQRankSum=0.00;QD=31.10;ReadPosRankSum=2.42;SOR=0.449 GT:AD:DP:GQ:PL 1/1:0,79:79:99:3130,238,0 0/1:17,26:43:99:694,0,403 +20 10074240 . T C 3998.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.298e+00;ClippingRankSum=0.00;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=59.86;MQRankSum=0.00;QD=29.84;ReadPosRankSum=-1.192e+00;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,85:85:99:3435,255,0 0/1:24,25:49:99:593,0,646 +20 10074716 . G A 3410.20 . AC=4;AF=1.00;AN=4;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.76;QD=27.86;SOR=1.337 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2429,192,0 1/1:0,33:33:99:1008,99,0 +20 10074806 . G A 3429.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.32;ClippingRankSum=0.00;DP=108;ExcessHet=3.0103;FS=4.013;MLEAC=3;MLEAF=0.750;MQ=59.57;MQRankSum=0.00;QD=31.75;ReadPosRankSum=-1.000e-01;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2846,213,0 0/1:14,23:37:99:613,0,307 +20 10075043 . T C 3584.20 . AC=4;AF=1.00;AN=4;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.77;QD=34.17;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2434,184,0 1/1:0,39:39:99:1177,116,0 +20 10075168 . C T 4645.20 . AC=4;AF=1.00;AN=4;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.53;QD=28.60;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3641,264,0 1/1:0,33:33:99:1031,99,0 +20 10075463 . G A 506.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.247;ClippingRankSum=0.00;DP=91;ExcessHet=3.0103;FS=4.566;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.05;ReadPosRankSum=-2.174e+00;SOR=1.383 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1800 0/1:19,23:42:99:536,0,436 +20 10075479 . A G 1430.42 . AC=2;AF=0.500;AN=4;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=25.57;SOR=0.968 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1800 1/1:0,39:39:99:1465,120,0 +20 10075508 . GAA G,GA 2284.15 . AC=1,2;AF=0.250,0.500;AN=4;BaseQRankSum=-1.270e-01;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1,2;MLEAF=0.250,0.500;MQ=60.86;MQRankSum=0.00;QD=24.56;ReadPosRankSum=2.47;SOR=0.722 GT:AD:DP:GQ:PL 2/2:0,0,70:70:99:1966,1966,1966,210,210,0 0/1:12,11,0:23:99:357,0,371,393,405,798 +20 10075669 . GA G 773.38 . AC=2;AF=0.500;AN=4;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.34;QD=26.67;SOR=0.760 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 1/1:0,29:29:87:817,87,0 +20 10075927 . T C 549.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.298e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=10.98;ReadPosRankSum=-1.755e+00;SOR=0.460 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 0/1:27,23:50:99:579,0,718 +20 10076250 . A G 2333.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.386e+00;DP=123;ExcessHet=3.0103;FS=12.725;MLEAC=3;MLEAF=0.750;MQ=59.61;MQRankSum=-1.423e+00;QD=19.12;ReadPosRankSum=0.270;SOR=0.573 GT:AD:DP:GQ:PL 0/1:40,39:79:99:1136,0,1339 1/1:0,43:43:99:1227,129,0 +20 10076339 . A G 2905.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-6.900e-02;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=59.82;MQRankSum=-8.660e-01;QD=22.88;ReadPosRankSum=1.02;SOR=0.697 GT:AD:DP:GQ:PL 0/1:32,40:72:99:1338,0,1035 1/1:0,55:55:99:1597,164,0 +20 10076399 . G A 3159.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=4.15;DP=139;ExcessHet=3.0103;FS=5.581;MLEAC=3;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=22.73;ReadPosRankSum=-1.058e+00;SOR=1.167 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1836,0,1544 1/1:0,45:45:99:1353,133,0 +20 10076749 . G A 1232.42 . AC=2;AF=0.500;AN=4;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=32.43;SOR=1.329 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 1/1:0,38:38:99:1267,114,0 +20 10076796 . A G 1129.42 . AC=2;AF=0.500;AN=4;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.52;SOR=0.984 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 1/1:0,37:37:99:1164,111,0 +20 10076860 . A C 1192.42 . AC=2;AF=0.500;AN=4;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=27.73;SOR=0.941 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 1/1:0,43:43:99:1227,129,0 +20 10076989 . CA CAAAAA,C 1180.16 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=-1.760e-01;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2,1;MLEAF=0.500,0.250;MQ=58.30;MQRankSum=-1.670e-01;QD=29.50;ReadPosRankSum=0.087;SOR=0.571 GT:AD:DP:GQ:PGT:PID:PL 0/2:7,0,13:30:99:.:.:211,281,664,0,382,335 1/1:1,19,0:20:62:1|1:10076989_C_CAAAA:964,62,0,967,69,975 +20 10077267 . A T 1681.42 . AC=2;AF=0.500;AN=4;DP=85;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=33.11;SOR=0.968 GT:AD:DP:GQ:PGT:PID:PL 0/0:44,0:44:99:.:.:0,102,1654 1/1:0,39:39:99:1|1:10077267_A_T:1716,117,0 +20 10077275 . A G 1684.42 . AC=2;AF=0.500;AN=4;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.20;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL 0/0:44,0:44:99:.:.:0,102,1654 1/1:0,38:38:99:1|1:10077267_A_T:1719,117,0 +20 10077752 . T C 1344.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-6.503e+00;DP=123;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=17.02;ReadPosRankSum=-3.520e-01;SOR=1.251 GT:AD:DP:GQ:PL 0/1:34,45:79:99:1374,0,1187 0/0:44,0:44:99:0,99,1170 +20 10077820 . TC T 1232.38 . AC=2;AF=0.500;AN=4;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.49;SOR=0.749 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,108,1620 1/1:0,35:35:99:1276,105,0 +20 10078505 . G A 1141.42 . AC=2;AF=0.500;AN=4;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=32.61;SOR=0.749 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,108,1620 1/1:0,35:35:99:1176,105,0 +20 10078897 . T TA 1175.38 . AC=2;AF=0.500;AN=4;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=29.38;SOR=0.793 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,108,1620 1/1:0,40:40:99:1219,129,0 +20 10079065 . T C 1087.42 . AC=2;AF=0.500;AN=4;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=27.88;SOR=0.850 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,108,1620 1/1:0,39:39:99:1122,116,0 +20 10079396 . A G 1398.42 . AC=2;AF=0.500;AN=4;DP=97;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=27.97;SOR=0.773 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,108,1620 1/1:0,50:50:99:1433,150,0 +20 10079761 . T TAA 1820.38 . AC=2;AF=0.500;AN=4;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=31.67;SOR=0.843 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,105,1571 1/1:0,41:41:99:1864,126,0 +20 10079821 . C G 1124.42 . AC=2;AF=0.500;AN=4;DP=76;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=31.23;SOR=0.804 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,105,1571 1/1:0,36:36:99:1159,108,0 +20 10081750 . C A 1352.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.67;DP=121;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.29;ReadPosRankSum=-4.060e-01;SOR=0.664 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1382,0,1525 0/0:38,0:38:95:0,95,1088 +20 10081800 . C T 1108.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.241;DP=105;ExcessHet=3.0103;FS=11.086;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.30;ReadPosRankSum=-2.622e+00;SOR=0.143 GT:AD:DP:GQ:PL 0/1:35,33:68:99:1138,0,1222 0/0:37,0:37:99:0,99,1143 +20 10082476 . A G 522.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=83;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=-5.430e-01;SOR=1.099 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,111,1665 0/1:19,21:40:99:552,0,487 +20 10082892 . C T 2681.20 . AC=4;AF=1.00;AN=4;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=59.69;QD=29.53;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1741,132,0 1/1:0,31:31:93:967,93,0 +20 10083191 . A T 482.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.131e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.69;ReadPosRankSum=-6.800e-01;SOR=0.368 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1530 0/1:18,20:38:99:512,0,452 +20 10084121 . C T 1451.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.401e+00;ClippingRankSum=0.00;DP=85;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=30.88;ReadPosRankSum=-4.290e-01;SOR=0.527 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1530 1/1:1,46:47:99:1486,107,0 +20 10085054 . A G 1201.42 . AC=2;AF=0.500;AN=4;DP=79;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=29.30;SOR=0.843 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1530 1/1:0,41:41:99:1236,123,0 +20 10085211 . A T 1209.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.501e+00;DP=114;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.250;MQ=59.70;MQRankSum=-1.028e+00;QD=15.91;ReadPosRankSum=-1.405e+00;SOR=0.723 GT:AD:DP:GQ:PL 0/1:40,36:76:99:1239,0,1443 0/0:38,0:38:90:0,90,1350 +20 10085320 . C T 1234.42 . AC=2;AF=0.500;AN=4;DP=95;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=30.86;SOR=0.902 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 1/1:0,40:40:99:1269,120,0 +20 10086110 . G A 2141.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.430e-01;DP=108;ExcessHet=3.0103;FS=1.581;MLEAC=3;MLEAF=0.750;MQ=59.36;MQRankSum=-6.800e-01;QD=19.83;ReadPosRankSum=0.170;SOR=0.518 GT:AD:DP:GQ:PL 0/1:43,38:81:99:1303,0,1506 1/1:0,27:27:81:868,81,0 +20 10086283 . G T 2120.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.30;ClippingRankSum=0.00;DP=123;ExcessHet=3.0103;FS=1.467;MLEAC=3;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=17.38;ReadPosRankSum=1.89;SOR=0.522 GT:AD:DP:GQ:PL 0/1:52,32:84:99:1054,0,1771 1/1:1,37:38:99:1096,104,0 +20 10086619 . T A 795.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.256;DP=106;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.250;MQ=59.67;MQRankSum=-1.312e+00;QD=11.36;ReadPosRankSum=-7.600e-01;SOR=0.846 GT:AD:DP:GQ:PL 0/1:45,25:70:99:825,0,1603 0/0:36,0:36:99:0,99,1127 +20 10086853 . G A 2053.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=3.92;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=59.61;MQRankSum=-1.770e-01;QD=19.37;ReadPosRankSum=-1.000e-01;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,32:73:99:.:.:1031,0,1280 1/1:0,33:33:99:1|1:10086847_G_T:1052,99,0 +20 10086954 . G A 2013.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.61;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=20.34;ReadPosRankSum=-5.340e-01;SOR=0.672 GT:AD:DP:GQ:PL 0/1:34,34:68:99:1124,0,1051 1/1:0,31:31:92:919,92,0 +20 10087230 . A G 2798.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.427e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=3.379;MLEAC=3;MLEAF=0.750;MQ=59.18;MQRankSum=1.71;QD=21.52;ReadPosRankSum=0.307;SOR=0.759 GT:AD:DP:GQ:PL 0/1:42,54:96:99:1871,0,1428 1/1:1,33:34:66:957,66,0 +20 10087394 . T G 1687.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.340e+00;DP=122;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.250;MQ=59.73;MQRankSum=1.21;QD=20.09;ReadPosRankSum=0.885;SOR=0.436 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1717,0,1186 0/0:38,0:38:99:0,99,1150 +20 10087754 . T G 1346.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.355;DP=110;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.250;MQ=60.39;MQRankSum=2.19;QD=17.26;ReadPosRankSum=-5.510e-01;SOR=0.562 GT:AD:DP:GQ:PL 0/1:37,41:78:99:1376,0,1239 0/0:31,0:31:90:0,90,1350 +20 10087804 . C T 2500.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.94;DP=132;ExcessHet=3.0103;FS=1.477;MLEAC=3;MLEAF=0.750;MQ=60.99;MQRankSum=2.62;QD=18.94;ReadPosRankSum=0.341;SOR=0.554 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1648,0,1511 1/1:0,32:32:94:882,94,0 +20 10087820 . C CAGAG,CAG 1855.15 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=-1.974e+00;DP=133;ExcessHet=3.0103;FS=2.946;MLEAC=2,1;MLEAF=0.500,0.250;MQ=60.88;MQRankSum=0.422;QD=21.83;ReadPosRankSum=-3.570e-01;SOR=1.014 GT:AD:DP:GQ:PL 0/2:35,0,18:53:99:466,661,2189,0,1238,1168 1/1:0,32,0:32:96:1428,96,0,1428,96,1428 +20 10088063 . C T 2723.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=3.41;DP=140;ExcessHet=3.0103;FS=4.363;MLEAC=3;MLEAF=0.750;MQ=59.57;MQRankSum=0.515;QD=20.17;ReadPosRankSum=0.285;SOR=1.138 GT:AD:DP:GQ:PL 0/1:49,44:93:99:1446,0,1403 1/1:0,42:42:99:1307,125,0 +20 10088699 . C T 2180.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=3.80;DP=113;ExcessHet=3.0103;FS=11.595;MLEAC=3;MLEAF=0.750;MQ=57.87;MQRankSum=-3.140e+00;QD=20.38;ReadPosRankSum=-1.456e+00;SOR=1.041 GT:AD:DP:GQ:PL 0/1:36,26:62:99:805,0,1088 1/1:0,45:45:99:1405,135,0 +20 10088730 . G A 2796.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.224;DP=94;ExcessHet=3.0103;FS=13.370;MLEAC=3;MLEAF=0.750;MQ=56.33;MQRankSum=-4.839e+00;QD=30.07;ReadPosRankSum=0.581;SOR=1.017 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,23:52:99:0|1:10088730_G_A:1001,0,1152 1/1:0,41:41:99:1|1:10088730_G_A:1825,123,0 +20 10088736 . A C 3079.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.282;DP=99;ExcessHet=3.0103;FS=9.329;MLEAC=3;MLEAF=0.750;MQ=55.67;MQRankSum=-5.169e+00;QD=31.42;ReadPosRankSum=0.573;SOR=0.641 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,27:55:99:0|1:10088730_G_A:1110,0,1194 1/1:0,43:43:99:1|1:10088730_G_A:1999,138,0 +20 10088747 . A G 3148.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.877e+00;DP=103;ExcessHet=3.0103;FS=7.652;MLEAC=3;MLEAF=0.750;MQ=55.54;MQRankSum=-4.907e+00;QD=31.17;ReadPosRankSum=9.000e-03;SOR=0.764 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,29:54:99:0|1:10088730_G_A:1140,0,995 1/1:0,47:47:99:1|1:10088730_G_A:2038,144,0 +20 10088799 . G A 2337.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=5.50;DP=94;ExcessHet=3.0103;FS=8.265;MLEAC=3;MLEAF=0.750;MQ=56.15;MQRankSum=-2.498e+00;QD=25.13;ReadPosRankSum=1.08;SOR=0.604 GT:AD:DP:GQ:PL 0/1:22,31:53:99:1047,0,617 1/1:0,40:40:99:1320,120,0 +20 10088895 . C T 1463.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.46;DP=74;ExcessHet=3.0103;FS=2.120;MLEAC=3;MLEAF=0.750;MQ=58.26;MQRankSum=0.577;QD=20.32;ReadPosRankSum=1.30;SOR=0.633 GT:AD:DP:GQ:PL 0/1:23,18:41:99:561,0,673 1/1:0,31:31:92:932,92,0 +20 10088968 . C CAAA 2955.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.552;DP=95;ExcessHet=3.0103;FS=1.907;MLEAC=3;MLEAF=0.750;MQ=55.48;MQRankSum=-4.750e+00;QD=32.63;ReadPosRankSum=2.42;SOR=1.012 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,23:53:99:0|1:10088968_C_CAAA:1213,0,1367 1/1:0,30:30:99:1|1:10088968_C_CAAA:1781,128,0 +20 10088980 . T C 3105.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.585e+00;DP=113;ExcessHet=3.0103;FS=2.621;MLEAC=3;MLEAF=0.750;MQ=54.22;MQRankSum=-5.232e+00;QD=27.72;ReadPosRankSum=1.29;SOR=0.917 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,31:68:99:0|1:10088968_C_CAAA:1276,0,1627 1/1:0,44:44:99:1|1:10088968_C_CAAA:1859,135,0 +20 10088985 . T C 3103.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.920e-01;DP=118;ExcessHet=3.0103;FS=3.545;MLEAC=3;MLEAF=0.750;MQ=54.16;MQRankSum=-5.248e+00;QD=26.52;ReadPosRankSum=1.23;SOR=0.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,32:74:99:0|1:10088968_C_CAAA:1207,0,1729 1/1:0,43:43:99:.:.:1926,132,0 +20 10089149 . A G 1102.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.75;ClippingRankSum=0.00;DP=114;ExcessHet=0.7918;FS=3.979;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=27.56;ReadPosRankSum=-4.740e-01;SOR=0.990 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,120,1800 1/1:1,39:40:99:1137,108,0 +20 10089441 . A G 1178.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-4.885e+00;DP=114;ExcessHet=3.0103;FS=6.071;MLEAC=1;MLEAF=0.250;MQ=59.70;MQRankSum=-9.480e-01;QD=15.50;ReadPosRankSum=-1.560e-01;SOR=1.363 GT:AD:DP:GQ:PL 0/1:37,39:76:99:1208,0,1313 0/0:38,0:38:99:0,102,1104 +20 10089525 . C T 2899.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=5.86;DP=124;ExcessHet=3.0103;FS=7.522;MLEAC=3;MLEAF=0.750;MQ=59.66;MQRankSum=1.53;QD=23.38;ReadPosRankSum=0.862;SOR=0.754 GT:AD:DP:GQ:PL 0/1:38,43:81:99:1577,0,1088 1/1:0,43:43:99:1352,128,0 +20 10090289 . CAA C,CA 1392.15 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=0.441;ClippingRankSum=0.00;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2,1;MLEAF=0.500,0.250;MQ=59.98;MQRankSum=1.39;QD=20.47;ReadPosRankSum=0.048;SOR=0.841 GT:AD:DP:GQ:PL 0/2:14,4,20:38:99:422,360,986,0,261,230 1/1:1,29,0:30:66:1009,66,0,1012,88,1033 +20 10090764 . A G 2026.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-2.659e+00;DP=109;ExcessHet=3.0103;FS=9.917;MLEAC=3;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=18.76;ReadPosRankSum=1.21;SOR=0.441 GT:AD:DP:GQ:PL 0/1:34,29:63:99:869,0,1207 1/1:0,45:45:99:1187,133,0 +20 10090886 . G A 1432.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.03;ClippingRankSum=0.00;DP=121;ExcessHet=0.7918;FS=1.777;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=25.58;ReadPosRankSum=1.80;SOR=0.597 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,120,1800 1/1:5,51:56:48:1467,48,0 +20 10090970 . T C 1256.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-4.840e-01;DP=113;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.250;MQ=59.46;MQRankSum=1.51;QD=18.21;ReadPosRankSum=-7.200e-02;SOR=0.518 GT:AD:DP:GQ:PL 0/1:33,36:69:99:1286,0,1092 0/0:44,0:44:99:0,113,1448 +20 10091214 . C T 1248.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.361;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.73;MQRankSum=-9.160e-01;QD=17.83;ReadPosRankSum=-3.500e-02;SOR=0.625 GT:AD:DP:GQ:PL 0/1:33,37:70:99:1278,0,1110 0/0:44,0:44:99:0,113,1448 +20 10091220 . A G 1200.42 . AC=2;AF=0.500;AN=4;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=27.28;SOR=0.883 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,120,1800 1/1:0,44:44:99:1235,130,0 +20 10092415 . A G 1634.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-6.731e+00;DP=140;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=16.18;ReadPosRankSum=0.082;SOR=0.665 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1664,0,1902 0/0:39,0:39:99:0,108,1239 +20 10092642 . T C 1393.42 . AC=2;AF=0.500;AN=4;DP=111;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=27.32;SOR=0.732 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,120,1800 1/1:0,51:51:99:1428,151,0 +20 10092927 . G T 105.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.507e+00;DP=113;ExcessHet=3.0103;FS=60.191;MLEAC=1;MLEAF=0.250;MQ=59.37;MQRankSum=-3.009e+00;QD=1.46;ReadPosRankSum=-2.200e-01;SOR=5.279 GT:AD:DP:GQ:PL 0/1:59,13:72:99:135,0,1864 0/0:40,0:40:99:0,108,1608 +20 10093568 . GT GTTT,G 1219.15 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=0.426;DP=87;ExcessHet=3.0103;FS=1.087;MLEAC=2,1;MLEAF=0.500,0.250;MQ=59.27;MQRankSum=0.410;QD=21.02;ReadPosRankSum=1.26;SOR=0.452 GT:AD:DP:GQ:PGT:PID:PL 0/2:17,0,17:42:99:.:.:364,431,885,0,449,386 1/1:0,24,0:24:75:1|1:10093568_G_GTT:894,75,0,894,75,894 +20 10093923 . T A 1074.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-6.670e-01;DP=104;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.250;MQ=59.19;MQRankSum=0.358;QD=16.03;ReadPosRankSum=-1.583e+00;SOR=0.772 GT:AD:DP:GQ:PL 0/1:35,32:67:99:1104,0,1257 0/0:37,0:37:91:0,91,1230 +20 10094251 . T A 1269.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.251;DP=99;ExcessHet=3.0103;FS=11.483;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=20.47;ReadPosRankSum=1.81;SOR=1.211 GT:AD:DP:GQ:PL 0/1:26,36:62:99:1299,0,781 0/0:37,0:37:99:0,100,1165 +20 10094582 . A G 922.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.388e+00;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.39;MQRankSum=1.27;QD=13.37;ReadPosRankSum=-1.800e-02;SOR=0.772 GT:AD:DP:GQ:PL 0/1:39,30:69:99:952,0,1350 0/0:37,0:37:99:0,99,1130 +20 10094774 . C T 1035.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-7.840e-01;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.69;MQRankSum=0.962;QD=13.80;ReadPosRankSum=0.197;SOR=0.690 GT:AD:DP:GQ:PL 0/1:40,35:75:99:1065,0,1282 0/0:49,0:49:97:0,97,1393 +20 10095432 . GTGATGATGA GTGA,G 2055.15 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=1.27;DP=112;ExcessHet=3.0103;FS=3.183;MLEAC=2,1;MLEAF=0.500,0.250;MQ=56.20;MQRankSum=-4.431e+00;QD=26.69;ReadPosRankSum=0.396;SOR=0.404 GT:AD:DP:GQ:PL 0/2:27,0,23:50:99:877,959,3140,0,2181,2108 1/1:0,27,0:27:82:1217,82,0,1217,82,1217 +20 10095741 . A G 1074.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-5.340e-01;DP=105;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.250;MQ=57.35;MQRankSum=-2.313e+00;QD=15.35;ReadPosRankSum=-5.000e-01;SOR=0.515 GT:AD:DP:GQ:PL 0/1:36,34:70:99:1104,0,1233 0/0:34,0:34:67:0,67,972 +20 10096293 . C T 1354.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=4.66;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.57;MQRankSum=1.40;QD=18.06;ReadPosRankSum=-1.135e+00;SOR=0.638 GT:AD:DP:GQ:PL 0/1:37,38:75:99:1384,0,1258 0/0:40,0:40:99:0,108,1181 +20 10096357 . A G 1131.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.964;ClippingRankSum=0.00;DP=101;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=26.94;ReadPosRankSum=1.55;SOR=0.460 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,120,1800 1/1:1,41:42:94:1166,94,0 +20 10096596 . C T 1561.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=2.73;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.77;MQRankSum=0.612;QD=17.94;ReadPosRankSum=-1.700e-01;SOR=0.640 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1591,0,1273 0/0:43,0:43:99:0,99,1273 +20 10096733 . C T 1712.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.16;ClippingRankSum=0.00;DP=134;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=30.04;ReadPosRankSum=-9.330e-01;SOR=0.252 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,120,1800 1/1:1,56:57:99:1747,143,0 +20 10096768 . A C 3466.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-2.764e+00;DP=148;ExcessHet=3.0103;FS=6.852;MLEAC=3;MLEAF=0.750;MQ=59.61;MQRankSum=-1.609e+00;QD=23.58;ReadPosRankSum=0.613;SOR=0.522 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1711,0,1452 1/1:0,56:56:99:1785,168,0 +20 10096899 . G T 3448.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.76;DP=120;ExcessHet=3.0103;FS=9.707;MLEAC=3;MLEAF=0.750;MQ=59.78;MQRankSum=-1.387e+00;QD=28.73;ReadPosRankSum=0.422;SOR=1.590 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,40:79:99:0|1:10096899_G_T:1643,0,1520 1/1:0,41:41:99:1|1:10096899_G_T:1835,123,0 +20 10096905 . TA T 3434.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-7.550e-01;DP=123;ExcessHet=3.0103;FS=13.029;MLEAC=3;MLEAF=0.750;MQ=59.60;MQRankSum=-1.677e+00;QD=27.92;ReadPosRankSum=0.461;SOR=1.725 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,43:83:99:0|1:10096899_G_T:1638,0,1623 1/1:0,40:40:99:1|1:10096899_G_T:1835,123,0 +20 10096925 . T C 334.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=-4.687e+00;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=8.79;ReadPosRankSum=-6.140e-01;SOR=0.399 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,120,1800 0/1:20,18:38:99:364,0,556 +20 10096933 . G C 3240.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.914e+00;DP=123;ExcessHet=3.0103;FS=28.941;MLEAC=3;MLEAF=0.750;MQ=59.51;MQRankSum=-1.802e+00;QD=26.34;ReadPosRankSum=0.334;SOR=1.469 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,41:85:99:0|1:10096933_G_C:1540,0,1770 1/1:0,38:38:99:1|1:10096933_G_C:1730,117,0 +20 10096958 . G A 3662.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.84;DP=139;ExcessHet=3.0103;FS=22.455;MLEAC=3;MLEAF=0.750;MQ=59.57;MQRankSum=-1.701e+00;QD=26.35;ReadPosRankSum=-1.833e+00;SOR=1.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,47:92:99:0|1:10096933_G_C:1795,0,1629 1/1:0,47:47:99:1|1:10096933_G_C:1897,141,0 +20 10097075 . T G 2500.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.82;ClippingRankSum=0.00;DP=126;ExcessHet=3.0103;FS=5.781;MLEAC=3;MLEAF=0.750;MQ=58.96;MQRankSum=0.00;QD=19.84;ReadPosRankSum=1.53;SOR=0.480 GT:AD:DP:GQ:PL 0/1:44,48:92:99:1474,0,1482 1/1:1,33:34:92:1056,92,0 +20 10097101 . C CTTTT,CTTT 2098.15 . AC=2,1;AF=0.500,0.250;AN=4;BaseQRankSum=-1.134e+00;DP=104;ExcessHet=3.0103;FS=4.258;MLEAC=2,1;MLEAF=0.500,0.250;MQ=58.27;MQRankSum=-2.428e+00;QD=24.40;ReadPosRankSum=2.09;SOR=0.358 GT:AD:DP:GQ:PL 0/2:34,4,26:64:99:1129,558,2012,0,1324,1306 1/1:0,22,0:22:71:1008,71,0,1008,71,1009 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 1053.15 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.82;DP=119;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.250;MQ=54.27;MQRankSum=-6.464e+00;QD=11.83;ReadPosRankSum=-3.097e+00;SOR=0.948 GT:AD:DP:GQ:PL 0/1:57,32:89:99:1092,0,2241 0/0:30,0:30:66:0,66,990 +20 10097437 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC *,TTTTCTTTCTTTCTTTCTTTCTTTCTTTC,T 3019.16 . AC=1,1,2;AF=0.250,0.250,0.500;AN=4;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1,1,2;MLEAF=0.250,0.250,0.500;MQ=55.40;QD=30.36;SOR=1.905 GT:AD:DP:GQ:PL 1/2:0,32,23,0:55:99:2127,940,1799,1195,0,1125,2201,1453,1262,2642 3/3:0,0,0,21:21:67:928,928,928,928,928,928,67,67,67,0 +20 10097626 . C A 625.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.09;DP=77;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.250;MQ=58.24;MQRankSum=-1.331e+00;QD=13.02;ReadPosRankSum=1.02;SOR=0.324 GT:AD:DP:GQ:PL 0/1:28,20:48:99:655,0,957 0/0:29,0:29:81:0,81,1014 +20 10097751 . T C 959.42 . AC=2;AF=0.500;AN=4;BaseQRankSum=-3.680e-01;ClippingRankSum=0.00;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=25.25;ReadPosRankSum=1.08;SOR=0.350 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 1/1:1,37:38:82:994,82,0 +20 10097789 . T C 2017.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.157e+00;DP=100;ExcessHet=3.0103;FS=5.286;MLEAC=3;MLEAF=0.750;MQ=58.63;MQRankSum=-2.805e+00;QD=20.17;ReadPosRankSum=0.220;SOR=0.574 GT:AD:DP:GQ:PL 0/1:34,23:57:99:717,0,1190 1/1:0,43:43:99:1330,129,0 +20 10097928 . G A 1508.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.203e+00;DP=66;ExcessHet=3.0103;FS=1.106;MLEAC=3;MLEAF=0.750;MQ=58.95;MQRankSum=-1.654e+00;QD=23.20;ReadPosRankSum=-7.900e-02;SOR=1.038 GT:AD:DP:GQ:PL 0/1:17,19:36:99:599,0,586 1/1:0,29:29:87:939,87,0 +20 10098110 . G C 2478.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.51;DP=80;ExcessHet=3.0103;FS=26.615;MLEAC=3;MLEAF=0.750;MQ=59.42;MQRankSum=-1.477e+00;QD=30.98;ReadPosRankSum=-7.300e-01;SOR=0.010 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,17:36:99:0|1:10098110_G_C:615,0,727 1/1:0,44:44:99:1|1:10098110_G_C:1893,135,0 +20 10098135 . C A 2250.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.155e+00;DP=80;ExcessHet=3.0103;FS=40.921;MLEAC=3;MLEAF=0.750;MQ=59.83;MQRankSum=1.55;QD=28.48;ReadPosRankSum=-5.910e-01;SOR=0.003 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,14:38:99:0|1:10098110_G_C:500,0,964 1/1:0,41:41:99:1|1:10098110_G_C:1780,126,0 +20 10098219 . TATATATA T 1663.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=3.15;DP=54;ExcessHet=3.0103;FS=19.931;MLEAC=3;MLEAF=0.750;MQ=58.45;MQRankSum=-2.050e-01;QD=31.98;ReadPosRankSum=0.427;SOR=0.013 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,9:21:99:0|1:10098219_TATATATA_T:333,0,461 1/1:0,31:31:96:1|1:10098219_TATATATA_T:1369,96,0 +20 10098237 . A T 1588.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=6.000e-03;DP=47;ExcessHet=3.0103;FS=11.066;MLEAC=3;MLEAF=0.750;MQ=58.16;MQRankSum=-1.742e+00;QD=34.53;ReadPosRankSum=0.277;SOR=0.043 GT:AD:DP:GQ:PGT:PID:PL 0/1:6,7:13:99:0|1:10098219_TATATATA_T:273,0,273 1/1:0,33:33:98:1|1:10098219_TATATATA_T:1345,98,0 +20 10098265 . T C 132.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.83;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=41.96;MQRankSum=-1.834e+00;QD=22.03;ReadPosRankSum=0.00;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,4:6:59:0|1:10098219_TATATATA_T:162,0,59 0/0:44,0:44:90:.:.:0,90,1350 +20 10098644 . ATT A 189.29 . AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.33;QD=28.13;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL ./.:1,0:1:.:.:.:0,0,0 1/1:0,4:4:15:1|1:10098644_ATT_A:225,15,0 +20 10098660 . G A 284.47 . AC=2;AF=0.500;AN=4;DP=11;ExcessHet=0.7918;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=41.04;QD=27.97;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/0:1,0:1:3:.:.:0,3,33 1/1:0,7:7:21:1|1:10098644_ATT_A:315,21,0 +20 10098668 . A AAT 365.38 . AC=2;AF=0.500;AN=4;DP=12;ExcessHet=0.7918;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=43.11;QD=28.31;SOR=1.863 GT:AD:DP:GQ:PGT:PID:PL 0/0:1,0:1:3:.:.:0,3,33 1/1:0,8:8:27:1|1:10098644_ATT_A:405,27,0 +20 10098689 . GTA G 587.13 . AC=2;AF=0.500;AN=4;DP=21;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.88;QD=35.21;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/0:4,0:4:12:.:.:0,12,150 1/1:0,13:13:42:1|1:10098644_ATT_A:630,42,0 +20 10098704 . A G 775.62 . AC=2;AF=0.500;AN=4;DP=26;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.08;QD=35.18;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/0:6,0:6:18:.:.:0,18,231 1/1:0,16:16:54:1|1:10098644_ATT_A:810,54,0 +20 10098729 . T TATATA 811.43 . AC=2;AF=0.500;AN=4;DP=32;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.87;QD=29.59;SOR=1.292 GT:AD:DP:GQ:PGT:PID:PL 0/0:9,0:9:24:.:.:0,24,360 1/1:0,19:19:57:1|1:10098644_ATT_A:855,57,0 +20 10098784 . TAC T 280.63 . AC=2;AF=0.500;AN=4;DP=19;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.51;QD=32.25;SOR=0.693 GT:AD:DP:GQ:PL 0/0:9,0:9:18:0,18,270 1/1:0,8:8:24:324,24,0 +20 10098885 . C CA 1595.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.165;DP=61;ExcessHet=3.0103;FS=13.392;MLEAC=3;MLEAF=0.750;MQ=54.77;MQRankSum=-4.449e+00;QD=26.59;ReadPosRankSum=-1.073e+00;SOR=0.054 GT:AD:DP:GQ:PL 0/1:17,14:31:99:471,0,572 1/1:0,29:29:87:1163,87,0 +20 10098945 . T C 1244.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.48;DP=48;ExcessHet=3.0103;FS=3.874;MLEAC=3;MLEAF=0.750;MQ=55.63;MQRankSum=-2.504e+00;QD=26.47;ReadPosRankSum=1.04;SOR=0.193 GT:AD:DP:GQ:PL 0/1:9,13:22:99:481,0,248 1/1:0,25:25:75:793,75,0 +20 10098987 . C T 378.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.13;DP=55;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.250;MQ=51.88;MQRankSum=-2.734e+00;QD=15.76;ReadPosRankSum=0.436;SOR=2.925 GT:AD:DP:GQ:PL 0/1:11,13:24:99:408,0,350 0/0:31,0:31:90:0,90,977 +20 10099029 . T C 1610.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.809e+00;DP=57;ExcessHet=3.0103;FS=2.698;MLEAC=3;MLEAF=0.750;MQ=56.40;MQRankSum=-3.641e+00;QD=28.25;ReadPosRankSum=-1.224e+00;SOR=0.346 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,10:28:99:0|1:10099029_T_C:363,0,768 1/1:0,29:29:87:1|1:10099029_T_C:1277,87,0 +20 10099034 . C A 1548.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.76;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=56.26;MQRankSum=-3.641e+00;QD=28.15;ReadPosRankSum=-1.850e+00;SOR=0.657 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,10:28:99:0|1:10099029_T_C:363,0,768 1/1:0,27:27:81:1|1:10099029_T_C:1215,81,0 +20 10099044 . A C 1548.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.148e+00;DP=51;ExcessHet=3.0103;FS=2.900;MLEAC=3;MLEAF=0.750;MQ=54.53;MQRankSum=-4.418e+00;QD=30.36;ReadPosRankSum=-2.207e+00;SOR=0.368 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,9:24:99:0|1:10099029_T_C:363,0,768 1/1:0,27:27:81:1|1:10099029_T_C:1215,81,0 +20 10099046 . T C 1563.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-2.165e+00;DP=51;ExcessHet=3.0103;FS=2.900;MLEAC=3;MLEAF=0.750;MQ=54.53;MQRankSum=-4.418e+00;QD=30.65;ReadPosRankSum=-2.297e+00;SOR=0.368 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,9:24:99:0|1:10099029_T_C:333,0,603 1/1:0,27:27:84:1|1:10099029_T_C:1260,84,0 +20 10099055 . T C 1605.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.554e+00;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=55.24;MQRankSum=-4.316e+00;QD=30.29;ReadPosRankSum=-1.970e+00;SOR=0.559 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,8:23:99:0|1:10099029_T_C:285,0,673 1/1:0,30:30:90:1|1:10099029_T_C:1350,90,0 +20 10099079 . C T 1501.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.43;DP=61;ExcessHet=3.0103;FS=5.502;MLEAC=3;MLEAF=0.750;MQ=55.66;MQRankSum=-2.821e+00;QD=25.02;ReadPosRankSum=0.969;SOR=1.396 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,6:29:99:0|1:10099029_T_C:145,0,886 1/1:0,31:31:96:1|1:10099029_T_C:1386,96,0 +20 10099111 . T TTTTGTTTG 1696.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.207e+00;DP=70;ExcessHet=3.0103;FS=1.042;MLEAC=3;MLEAF=0.750;MQ=54.66;MQRankSum=-4.071e+00;QD=29.24;ReadPosRankSum=-2.730e-01;SOR=0.489 GT:AD:DP:GQ:PL 0/1:22,13:35:99:694,0,802 1/1:0,23:23:72:1041,72,0 +20 10099140 . G T 2034.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.140e-01;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=56.86;MQRankSum=-2.469e+00;QD=21.87;ReadPosRankSum=0.338;SOR=0.656 GT:AD:DP:GQ:PL 0/1:30,32:62:99:1034,0,931 1/1:0,31:31:93:1030,93,0 +20 10099190 . G T 2180.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.400e-02;DP=103;ExcessHet=3.0103;FS=1.732;MLEAC=3;MLEAF=0.750;MQ=58.24;MQRankSum=-1.711e+00;QD=21.59;ReadPosRankSum=-1.260e+00;SOR=0.529 GT:AD:DP:GQ:PL 0/1:33,32:65:99:1063,0,1154 1/1:0,36:36:99:1147,108,0 +20 10099220 . A G 1500.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.664e+00;DP=76;ExcessHet=3.0103;FS=2.044;MLEAC=3;MLEAF=0.750;MQ=58.61;MQRankSum=-2.596e+00;QD=20.00;ReadPosRankSum=0.629;SOR=0.439 GT:AD:DP:GQ:PL 0/1:25,20:45:99:606,0,873 1/1:0,30:30:89:924,89,0 +20 10099250 . G A 698.19 . AC=1;AF=0.250;AN=4;BaseQRankSum=3.17;DP=69;ExcessHet=3.0103;FS=7.195;MLEAC=1;MLEAF=0.250;MQ=56.71;MQRankSum=-2.272e+00;QD=18.87;ReadPosRankSum=0.583;SOR=0.162 GT:AD:DP:GQ:PL 0/1:16,21:37:99:728,0,424 0/0:32,0:32:90:0,90,1350 +20 10099535 . G A 2589.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=5.03;DP=104;ExcessHet=3.0103;FS=5.820;MLEAC=3;MLEAF=0.750;MQ=59.38;MQRankSum=-1.418e+00;QD=25.14;ReadPosRankSum=-7.770e-01;SOR=0.307 GT:AD:DP:GQ:PL 0/1:26,39:65:99:1364,0,686 1/1:0,38:38:99:1255,114,0 +20 10099565 . C T 2689.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=4.60;DP=113;ExcessHet=3.0103;FS=16.934;MLEAC=3;MLEAF=0.750;MQ=59.63;MQRankSum=-1.266e+00;QD=24.01;ReadPosRankSum=1.23;SOR=0.174 GT:AD:DP:GQ:PL 0/1:31,38:69:99:1375,0,994 1/1:0,43:43:99:1344,128,0 +20 10099755 . C T 2076.19 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.55;DP=99;ExcessHet=3.0103;FS=5.472;MLEAC=3;MLEAF=0.750;MQ=59.58;MQRankSum=-2.200e-02;QD=21.40;ReadPosRankSum=-2.300e-01;SOR=0.542 GT:AD:DP:GQ:PL 0/1:33,32:65:99:1127,0,1148 1/1:0,32:32:95:979,95,0 +20 10099832 . A G 2184.19 . 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C T 905.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DP=64;ExcessHet=3.0103;FS=11.007;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.913;QD=14.15;ReadPosRankSum=-2.230e-01;SOR=1.538 GT:AD:DP:GQ:PL 0/1:36,28:64:99:934,0,1248 +20 10000211 . C T 941.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DP=53;ExcessHet=3.0103;FS=5.587;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.06;QD=17.77;ReadPosRankSum=0.703;SOR=0.944 GT:AD:DP:GQ:PL 0/1:26,27:53:99:970,0,906 +20 10000439 . T G 2804.77 . AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.06;QD=25.36;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2833,240,0 +20 10000598 . T A 1941.77 . AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.26;QD=28.73;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1970,147,0 +20 10000694 . G A 1008.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DP=82;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=48.66;MQRankSum=-5.114e+00;QD=12.30;ReadPosRankSum=0.657;SOR=0.566 GT:AD:DP:GQ:PL 0/1:45,37:82:99:1037,0,1601 +20 10000758 . T A 3838.77 . AC=2;AF=1.00;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.37;QD=30.97;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3867,286,0 +20 10001019 . T G 650.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541e+00;DP=65;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.500;MQ=49.49;MQRankSum=-7.498e+00;QD=10.01;ReadPosRankSum=-9.250e-01;SOR=0.665 GT:AD:DP:GQ:PL 0/1:39,26:65:99:679,0,1426 +20 10001298 . T A 2917.77 . AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.34;QD=27.24;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2946,220,0 +20 10001436 . A AAGGCT 2301.73 . AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.07;QD=28.20;SOR=3.442 GT:AD:DP:GQ:PL 1/1:0,50:50:99:2339,156,0 +20 10001474 . C T 2640.77 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.89;QD=25.00;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2669,219,0 +20 10001617 . C A 1731.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DP=103;ExcessHet=3.0103;FS=13.163;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=1.37;QD=16.81;ReadPosRankSum=-2.800e-01;SOR=1.346 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1760,0,1781 +20 10001628 . G A 3898.77 . AC=2;AF=1.00;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.17;QD=29.56;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3927,285,0 +20 10001661 . T C 3606.77 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.33;QD=30.62;SOR=1.193 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:10001661_T_C:3635,249,0 +20 10001670 . T G 3673.77 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.45;QD=28.17;SOR=0.995 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:10001661_T_C:3702,253,0 +20 10002058 . T G 2963.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQRankSum=3.07;QD=26.80;ReadPosRankSum=0.624;SOR=0.776 GT:AD:DP:GQ:PL 1/1:1,74:75:99:2992,216,0 +20 10002099 . C T 1194.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DP=65;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-8.500e-01;QD=18.38;ReadPosRankSum=0.173;SOR=0.375 GT:AD:DP:GQ:PL 0/1:27,38:65:99:1223,0,844 +20 10002138 . C G 2443.77 . AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.38;QD=26.00;SOR=0.730 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:10002138_C_G:2472,169,0 +20 10002142 . G C 2407.77 . AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.31;QD=30.02;SOR=0.853 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,52:52:99:1|1:10002138_C_G:2436,166,0 +20 10002470 . C T 2522.77 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.62;QD=31.98;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2551,189,0 +20 10002625 . G T 2665.77 . AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.05;QD=27.51;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2694,193,0 +20 10003021 . C T 2383.77 . AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.99;QD=29.11;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2412,181,0 +20 10003358 . A C 1454.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.000e-03;DP=89;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.01;QD=16.35;ReadPosRankSum=-1.355e+00;SOR=0.572 GT:AD:DP:GQ:PL 0/1:45,44:89:99:1483,0,1477 +20 10003651 . T C 3620.77 . AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.19;QD=28.08;SOR=1.511 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3649,279,0 +20 10003692 . A G 2609.77 . AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.45;QD=23.23;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2638,205,0 +20 10003832 . G A 2705.77 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.13;QD=29.03;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2734,199,0 +20 10004094 . A C 1825.77 . AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.75;QD=34.45;SOR=1.524 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1854,157,0 +20 10004147 . A G 1837.77 . AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.99;QD=30.67;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1866,156,0 +20 10004193 . G T 918.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040e-01;DP=52;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=3.42;QD=17.67;ReadPosRankSum=1.51;SOR=1.019 GT:AD:DP:GQ:PL 0/1:23,29:52:99:947,0,775 +20 10004222 . C CA 12.96 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=54;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-2.042e+00;QD=0.33;ReadPosRankSum=1.27;SOR=0.434 GT:AD:DP:GQ:PL 0/1:31,8:39:50:50,0,923 +20 10004223 . A AG 47.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=1.89;QD=1.02;ReadPosRankSum=0.339;SOR=0.638 GT:AD:DP:GQ:PL 0/1:36,11:47:85:85,0,982 +20 10004351 . C G 2755.77 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.04;QD=26.61;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2784,211,0 +20 10004389 . T G 2494.77 . AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.74;QD=29.20;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2523,187,0 +20 10004610 . A C 3625.77 . AC=2;AF=1.00;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.69;QD=28.55;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3654,267,0 +20 10004725 . A G 951.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154e+00;DP=65;ExcessHet=3.0103;FS=15.830;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=3.01;QD=14.64;ReadPosRankSum=2.09;SOR=0.605 GT:AD:DP:GQ:PL 0/1:35,30:65:99:980,0,1168 +20 10004769 . TAAAACTATGC T 981.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DP=79;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=-6.625e+00;QD=15.34;ReadPosRankSum=1.88;SOR=1.306 GT:AD:DP:GQ:PL 0/1:37,27:64:99:1019,0,1471 +20 10004874 . A C 3602.77 . AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.33;QD=34.42;SOR=1.286 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,87:87:99:1|1:10004874_A_C:3631,261,0 +20 10004887 . A G 1323.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=85;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-6.700e-02;QD=15.57;ReadPosRankSum=-1.114e+00;SOR=0.984 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,40:85:99:0|1:10004874_A_C:1352,0,1542 +20 10005010 . C T 2934.77 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.68;QD=28.53;SOR=1.226 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2963,217,0 +20 10005427 . C T 2214.77 . AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.58;QD=27.23;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2243,165,0 +20 10005499 . A G 3053.77 . AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.52;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,76:76:99:3082,229,0 +20 10005587 . A G 1229.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-8.340e-01;DP=72;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-9.720e-01;QD=17.08;ReadPosRankSum=0.248;SOR=0.848 GT:AD:DP:GQ:PL 0/1:36,36:72:99:1258,0,1236 +20 10005723 . A G 3062.77 . AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.78;QD=33.47;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3091,258,0 +20 10006291 . G A 978.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=84;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.081e+00;QD=11.65;ReadPosRankSum=-1.447e+00;SOR=0.659 GT:AD:DP:GQ:PL 0/1:53,31:84:99:1007,0,1905 +20 10006404 . A C 2928.77 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.16;QD=32.91;SOR=1.432 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2957,228,0 +20 10006682 . T A 2874.77 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.43;QD=31.31;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2903,219,0 +20 10006819 . AAAAC A 2531.73 . AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.13;QD=31.45;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2569,176,0 +20 10007150 . G C 669.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476e+00;DP=63;ExcessHet=3.0103;FS=5.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=10.63;ReadPosRankSum=-7.700e-02;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,25:63:99:0|1:10007150_G_C:698,0,1479 +20 10007175 . C T 1350.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DP=61;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=1.32;QD=22.14;ReadPosRankSum=-1.213e+00;SOR=0.434 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,38:61:99:1|0:10007150_G_C:1379,0,780 +20 10007352 . C T 2764.77 . AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;QD=33.27;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2793,208,0 +20 10007531 . A G 2920.77 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.74;QD=31.26;SOR=1.577 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2949,217,0 +20 10007980 . A C 3524.77 . AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;QD=27.76;SOR=0.990 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3553,270,0 +20 10008029 . T TA 1986.73 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQRankSum=0.576;QD=26.49;ReadPosRankSum=-1.326e+00;SOR=0.788 GT:AD:DP:GQ:PL 1/1:3,72:75:99:2024,145,0 +20 10008146 . TA T 2141.73 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.59;QD=30.60;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2179,211,0 +20 10008221 . T C 3224.77 . AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;QD=29.09;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,80:80:99:3253,240,0 +20 10008458 . T G 2654.77 . AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.73;QD=26.08;SOR=0.980 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2683,207,0 +20 10008742 . G T 715.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.22;MQRankSum=-1.502e+00;QD=14.61;ReadPosRankSum=0.190;SOR=0.741 GT:AD:DP:GQ:PL 0/1:23,26:49:99:744,0,580 +20 10008758 . C CA 684.14 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DP=44;ExcessHet=3.0103;FS=2.160;MLEAC=2;MLEAF=1.00;MQ=35.24;MQRankSum=-1.168e+00;QD=19.55;ReadPosRankSum=-5.200e-02;SOR=0.249 GT:AD:DP:GQ:PL 1/1:4,31:35:10:721,10,0 +20 10008921 . C CA 253.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-1.906e+00;QD=7.46;ReadPosRankSum=0.173;SOR=0.512 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,16:34:99:0|1:10008921_C_CA:291,0,366 +20 10008948 . TA T 2057.73 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQRankSum=2.05;QD=33.85;ReadPosRankSum=0.884;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,50:51:99:1|1:10008921_C_CA:2095,107,0 +20 10008952 . CACACACACACA C,CCACACACACA 1666.73 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.941;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.10;MQRankSum=1.84;QD=27.08;ReadPosRankSum=0.716;SOR=1.127 GT:AD:DP:GQ:PL 1/2:1,14,11:34:99:1704,525,845,582,0,530 +20 10009227 . A G 1369.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220e+00;DP=62;ExcessHet=3.0103;FS=9.110;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=1.43;QD=22.09;ReadPosRankSum=-1.159e+00;SOR=0.281 GT:AD:DP:GQ:PL 0/1:23,39:62:99:1398,0,740 +20 10009246 . A G 3002.77 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.09;QD=25.42;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:3031,231,0 +20 10009400 . T A 2998.77 . AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.65;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:3027,223,0 +20 10009512 . C G 3039.77 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.47;QD=29.48;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,77:77:99:3068,231,0 +20 10009719 . A G 1895.77 . AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.29;QD=32.13;SOR=0.950 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1924,175,0 +20 10009795 . A G 1880.77 . AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.60;QD=30.56;SOR=1.514 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1909,141,0 +20 10009842 . G GAA 532.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-6.030e-01;QD=15.67;ReadPosRankSum=1.72;SOR=0.738 GT:AD:DP:GQ:PL 0/1:19,15:34:99:570,0,690 +20 10009844 . G A 661.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=0.975;QD=18.91;ReadPosRankSum=-1.555e+00;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,19:35:99:0|1:10009844_G_A:690,0,586 +20 10009871 . A G 658.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DP=60;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=50.78;MQRankSum=1.50;QD=18.30;ReadPosRankSum=1.54;SOR=0.553 GT:AD:DP:GQ:PGT:PID:PL 0/1:17,19:36:99:0|1:10009844_G_A:687,0,594 +20 10009875 . A G,AGGGAGG 2378.77 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.378;DP=57;ExcessHet=3.0103;FS=6.794;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.25;MQRankSum=1.36;QD=33.63;ReadPosRankSum=1.04;SOR=0.599 GT:AD:DP:GQ:PL 1/2:2,15,13:30:99:2407,645,533,697,0,574 +20 10009879 . A G 2244.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DP=49;ExcessHet=3.0103;FS=9.369;MLEAC=2;MLEAF=1.00;MQ=49.62;MQRankSum=1.57;QD=30.55;ReadPosRankSum=1.11;SOR=1.474 GT:AD:DP:GQ:PL 1/1:2,47:49:99:2273,150,0 +20 10009883 . A G 2151.77 . AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.38;QD=32.62;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,47:47:99:2180,147,0 +20 10010393 . T G 1464.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.351e+00;DP=79;ExcessHet=3.0103;FS=11.600;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.284e+00;QD=18.54;ReadPosRankSum=-1.738e+00;SOR=0.606 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1493,0,1230 +20 10010536 . G GA 2462.73 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.63;QD=31.17;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2500,243,0 +20 10010766 . T G 2411.77 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.33;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2440,199,0 +20 10010832 . T C 2951.77 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.50;QD=35.36;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2980,226,0 +20 10011075 . C T 1325.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.36;DP=83;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.97;ReadPosRankSum=-1.036e+00;SOR=0.968 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1354,0,1333 +20 10011309 . T C 2692.77 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.97;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2721,231,0 +20 10011517 . GA G 490.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DP=91;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.80;QD=7.55;ReadPosRankSum=0.315;SOR=0.394 GT:AD:DP:GQ:PL 0/1:37,28:73:99:528,0,875 +20 10011666 . C T 2961.77 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.05;QD=34.30;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2990,220,0 +20 10011939 . C T 2469.77 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.26;QD=27.00;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2498,184,0 +20 10012021 . CA C 1975.73 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.08;QD=29.94;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2013,198,0 +20 10012362 . G T 835.77 . AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.78;QD=30.82;SOR=4.003 GT:AD:DP:GQ:PL 1/1:0,23:23:69:864,69,0 +20 10012384 . T C 229.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773e+00;DP=18;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=53.38;MQRankSum=-8.110e-01;QD=12.76;ReadPosRankSum=0.800;SOR=0.044 GT:AD:DP:GQ:PL 0/1:10,8:18:99:258,0,355 +20 10012387 . T C 533.77 . AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.49;QD=33.36;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,16:16:50:562,50,0 +20 10012479 . A G 592.77 . AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.01;QD=34.87;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,17:17:50:1|1:10012479_A_G:621,50,0 +20 10012498 . C G 466.77 . AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.03;QD=29.27;SOR=1.270 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,11:11:33:1|1:10012479_A_G:495,33,0 +20 10012518 . T C 406.77 . AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.96;QD=35.92;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,9:9:30:1|1:10012479_A_G:435,30,0 +20 10012521 . C T 46.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.77;MQRankSum=-3.800e-02;QD=4.25;ReadPosRankSum=1.97;SOR=1.179 GT:AD:DP:GQ:PL 0/1:8,3:11:75:75,0,224 +20 10012570 . G GCA 457.73 . AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=37.62;QD=29.63;SOR=3.056 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,9:9:33:1|1:10012570_G_GCA:495,33,0 +20 10012572 . GT G 457.73 . AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.52;QD=28.76;SOR=3.442 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,11:11:33:1|1:10012570_G_GCA:495,33,0 +20 10012631 . C CG 484.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e+00;DP=21;ExcessHet=3.0103;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-1.670e+00;QD=23.08;ReadPosRankSum=-1.813e+00;SOR=0.048 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,13:21:99:0|1:10012631_C_CG:522,0,297 +20 10012636 . G C 527.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DP=22;ExcessHet=3.0103;FS=5.959;MLEAC=1;MLEAF=0.500;MQ=48.93;MQRankSum=-1.513e+00;QD=23.99;ReadPosRankSum=-1.915e+00;SOR=0.058 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,14:22:99:0|1:10012631_C_CG:556,0,294 +20 10012714 . G C 1300.77 . AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.04;QD=29.94;SOR=2.964 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1329,105,0 +20 10012751 . T C 937.77 . AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.17;QD=31.26;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,30:30:89:966,89,0 +20 10013119 . C T 1011.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DP=59;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=51.48;MQRankSum=-1.089e+00;QD=17.15;ReadPosRankSum=0.159;SOR=0.405 GT:AD:DP:GQ:PL 0/1:29,30:59:99:1040,0,936 +20 10013574 . G A 1050.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DP=69;ExcessHet=3.0103;FS=7.109;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-2.710e-01;QD=15.23;ReadPosRankSum=0.706;SOR=1.675 GT:AD:DP:GQ:PL 0/1:38,31:69:99:1079,0,1301 +20 10014990 . C CAT 1237.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DP=87;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=3.11;QD=16.29;ReadPosRankSum=-4.370e-01;SOR=0.403 GT:AD:DP:GQ:PL 0/1:38,38:76:99:1275,0,1248 +20 10015679 . C T 140.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.08;ReadPosRankSum=0.497;SOR=0.693 GT:AD:DP:GQ:PL 0/1:5,5:10:99:169,0,166 +20 10015761 . T C 344.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982e+00;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=1.29;QD=15.67;ReadPosRankSum=1.80;SOR=0.352 GT:AD:DP:GQ:PL 0/1:9,13:22:99:373,0,284 +20 10018158 . G C 1639.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.21;DP=89;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.12;QD=18.63;ReadPosRankSum=1.18;SOR=0.834 GT:AD:DP:GQ:PL 0/1:40,48:88:99:1668,0,1165 +20 10018555 . G A 1567.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.270e-01;DP=80;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.60;ReadPosRankSum=0.815;SOR=0.627 GT:AD:DP:GQ:PL 0/1:35,45:80:99:1596,0,1211 +20 10019093 . A G 1244.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=69;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.07;QD=18.04;ReadPosRankSum=-2.520e-01;SOR=0.665 GT:AD:DP:GQ:PL 0/1:33,36:69:99:1273,0,1104 +20 10020229 . G A 1538.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.79;DP=82;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.104;QD=18.77;ReadPosRankSum=-5.490e-01;SOR=0.573 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1567,0,1130 +20 10023689 . G A 1852.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DP=80;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=1.35;QD=23.16;ReadPosRankSum=1.16;SOR=0.549 GT:AD:DP:GQ:PL 0/1:29,51:80:99:1881,0,946 +20 10024107 . C T 1694.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.77;DP=86;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.546e+00;QD=19.71;ReadPosRankSum=0.148;SOR=0.823 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1723,0,1086 +20 10024300 . C CTT 87.76 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DP=50;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-6.000e-01;QD=7.98;ReadPosRankSum=-1.073e+00;SOR=1.825 GT:AD:DP:GQ:PL 0/1:3,8:18:99:103,0,137 +20 10026357 . T C 1166.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e+00;DP=63;ExcessHet=3.0103;FS=8.911;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-1.480e-01;QD=18.52;ReadPosRankSum=-7.600e-02;SOR=0.722 GT:AD:DP:GQ:PL 0/1:28,35:63:99:1195,0,932 +20 10026794 . C T 1084.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DP=52;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-7.190e-01;QD=20.86;ReadPosRankSum=-5.330e-01;SOR=0.428 GT:AD:DP:GQ:PL 0/1:19,33:52:99:1113,0,529 +20 10027234 . A ATTAG 1320.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.060e-01;DP=72;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-8.450e-01;QD=19.14;ReadPosRankSum=-9.790e-01;SOR=0.926 GT:AD:DP:GQ:PL 0/1:34,35:69:99:1358,0,1964 +20 10027868 . A G 1739.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.793e+00;DP=89;ExcessHet=3.0103;FS=6.868;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.032;QD=19.55;ReadPosRankSum=1.87;SOR=0.881 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,45:89:99:0|1:10027868_A_G:1768,0,3201 +20 10027872 . A G 1724.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.491e+00;DP=85;ExcessHet=3.0103;FS=8.870;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.101;QD=20.29;ReadPosRankSum=1.05;SOR=0.826 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,45:85:99:0|1:10027868_A_G:1753,0,3136 +20 10028867 . A ATG 1106.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740e-01;DP=92;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=2.71;QD=15.59;ReadPosRankSum=0.364;SOR=0.336 GT:AD:DP:GQ:PL 0/1:32,39:71:99:1144,0,916 +20 10030188 . T A 1372.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=81;ExcessHet=3.0103;FS=9.186;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.013e+00;QD=16.95;ReadPosRankSum=-5.530e-01;SOR=1.105 GT:AD:DP:GQ:PL 0/1:42,39:81:99:1401,0,1524 +20 10031254 . A AT 1463.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DP=87;ExcessHet=3.0103;FS=9.250;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.017;QD=17.22;ReadPosRankSum=0.495;SOR=0.211 GT:AD:DP:GQ:PL 0/1:38,47:85:99:1501,0,1159 +20 10031342 . G A 1834.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=93;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-8.660e-01;QD=19.73;ReadPosRankSum=-1.200e-02;SOR=0.955 GT:AD:DP:GQ:PL 0/1:41,52:93:99:1863,0,1375 +20 10031798 . G A 4296.77 . AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.60;QD=31.54;SOR=0.900 GT:AD:DP:GQ:PL 1/1:0,104:104:99:4325,313,0 +20 10031827 . C T 2004.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DP=108;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-9.450e-01;QD=18.56;ReadPosRankSum=-1.396e+00;SOR=0.382 GT:AD:DP:GQ:PL 0/1:52,56:108:99:2033,0,1798 +20 10032094 . G A 1220.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.49;DP=83;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.71;ReadPosRankSum=-5.790e-01;SOR=0.260 GT:AD:DP:GQ:PL 0/1:47,36:83:99:1249,0,1497 +20 10032413 . T G 869.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.142e+00;DP=66;ExcessHet=3.0103;FS=10.444;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-6.500e-02;QD=13.18;ReadPosRankSum=-1.003e+00;SOR=1.293 GT:AD:DP:GQ:PL 0/1:35,31:66:99:898,0,1277 +20 10032882 . A T 1202.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.697e+00;DP=75;ExcessHet=3.0103;FS=4.673;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.014e+00;QD=16.04;ReadPosRankSum=0.626;SOR=0.338 GT:AD:DP:GQ:PL 0/1:39,36:75:99:1231,0,1406 +20 10032972 . C CAT 1122.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540e-01;DP=65;ExcessHet=3.0103;FS=5.062;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-1.017e+00;QD=17.82;ReadPosRankSum=-1.232e+00;SOR=1.300 GT:AD:DP:GQ:PL 0/1:33,30:63:99:1160,0,1477 +20 10034306 . T C 782.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661e+00;DP=76;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=1.15;QD=10.44;ReadPosRankSum=0.539;SOR=0.685 GT:AD:DP:GQ:PL 0/1:46,29:75:99:811,0,1593 +20 10036930 . CGATAGCCCTAGCCCTAGATA C 1036.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=93;ExcessHet=3.0103;FS=11.152;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-4.048e+00;QD=15.25;ReadPosRankSum=0.460;SOR=0.269 GT:AD:DP:GQ:PL 0/1:39,29:68:99:1074,0,5571 +20 10037037 . C T 1436.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DP=81;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.193e+00;QD=17.74;ReadPosRankSum=-1.609e+00;SOR=0.495 GT:AD:DP:GQ:PL 0/1:39,42:81:99:1465,0,1124 +20 10037110 . T TGATA 2780.73 . AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.98;QD=28.86;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2818,189,0 +20 10037144 . T TGATAGATA 1823.73 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.73;QD=29.41;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1861,127,0 +20 10037709 . A T 1003.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367e+00;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.934;QD=14.14;ReadPosRankSum=0.040;SOR=0.608 GT:AD:DP:GQ:PL 0/1:39,32:71:99:1032,0,1354 +20 10039371 . T G 1324.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260e+00;DP=74;ExcessHet=3.0103;FS=6.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=17.90;ReadPosRankSum=0.391;SOR=1.031 GT:AD:DP:GQ:PL 0/1:34,40:74:99:1353,0,1194 +20 10040772 . C CT 1995.73 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.69;QD=28.51;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2033,210,0 +20 10040812 . AT A 2607.73 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.73;QD=31.11;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2645,214,0 +20 10040821 . T A 1171.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-02;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.60;MQRankSum=-9.700e-02;QD=15.02;ReadPosRankSum=-1.385e+00;SOR=0.688 GT:AD:DP:GQ:PL 0/1:38,40:78:99:1200,0,1099 +20 10041304 . C T 2765.77 . AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.39;QD=34.66;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2794,204,0 +20 10041701 . A ATATG 1403.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=78;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=0.340;QD=25.07;ReadPosRankSum=-2.230e-01;SOR=0.260 GT:AD:DP:GQ:PL 0/1:8,48:56:58:1441,0,58 +20 10042319 . C T 2658.77 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.01;QD=29.40;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2687,199,0 +20 10042761 . A G 3553.77 . AC=2;AF=1.00;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=36.76;SOR=1.389 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3582,272,0 +20 10042829 . A G 3055.77 . AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.76;QD=30.54;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,78:78:99:3084,235,0 +20 10043002 . A T 1287.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.99;DP=86;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.97;ReadPosRankSum=-3.500e-02;SOR=0.434 GT:AD:DP:GQ:PL 0/1:48,38:86:99:1316,0,1659 +20 10044849 . A G 2091.77 . AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.61;QD=21.53;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2120,177,0 +20 10045078 . G T 3271.77 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.73;QD=34.87;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3300,244,0 +20 10045642 . G C 3107.77 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.48;QD=31.04;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3136,243,0 +20 10046178 . AAGAAAGAAAG A 2159.73 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.00;QD=27.86;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,50:50:99:2197,152,0 +20 10046537 . A G 819.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.909e+00;DP=57;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=0.395;QD=14.38;ReadPosRankSum=0.727;SOR=1.262 GT:AD:DP:GQ:PL 0/1:28,29:57:99:848,0,902 +20 10050828 . T C 1227.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704e+00;DP=86;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.892;QD=14.28;ReadPosRankSum=-1.400e-01;SOR=0.521 GT:AD:DP:GQ:PL 0/1:49,37:86:99:1256,0,1768 +20 10051448 . T C 1134.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DP=70;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.404e+00;QD=16.21;ReadPosRankSum=-7.050e-01;SOR=0.302 GT:AD:DP:GQ:PL 0/1:35,35:70:99:1163,0,1150 +20 10052688 . C A 1062.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=77;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.870;QD=13.80;ReadPosRankSum=1.44;SOR=0.379 GT:AD:DP:GQ:PL 0/1:45,32:77:99:1091,0,1645 +20 10058022 . T C 975.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346e+00;DP=68;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=0.466;QD=14.35;ReadPosRankSum=0.018;SOR=0.849 GT:AD:DP:GQ:PL 0/1:36,32:68:99:1004,0,1261 +20 10062935 . C CA 92.84 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-1.405e+00;QD=6.19;ReadPosRankSum=-9.860e-01;SOR=0.446 GT:AD:DP:GQ:PL 0/1:5,10:23:99:130,0,101 +20 10067049 . TAAAAAAAA T,TA 613.73 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.177;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.41;MQRankSum=-3.420e-01;QD=34.10;ReadPosRankSum=-1.322e+00;SOR=1.127 GT:AD:DP:GQ:PL 1/2:2,7,9:22:99:651,164,340,135,0,106 +20 10067090 . C A 2004.77 . AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.93;QD=34.17;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2033,164,0 +20 10067264 . G A 2922.77 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.37;QD=28.60;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2951,219,0 +20 10067722 . A C 2146.77 . AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.57;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,54:54:99:2175,163,0 +20 10068158 . GTGTATATATATA G 66.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DP=29;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=0.328;QD=9.53;ReadPosRankSum=0.524;SOR=0.061 GT:AD:DP:GQ:PL 0/1:3,4:7:57:104,0,57 +20 10068981 . G A 2503.77 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.11;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2532,184,0 +20 10070602 . T C 2691.77 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.71;QD=30.20;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2720,216,0 +20 10070936 . T A 3631.77 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.76;QD=30.49;SOR=0.876 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:10070936_T_A:3660,247,0 +20 10070938 . G GA 3656.73 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.10;QD=31.67;SOR=0.881 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,79:79:99:1|1:10070936_T_A:3694,250,0 +20 10071135 . C T 3257.77 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.12;QD=29.53;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,79:79:99:3286,238,0 +20 10071187 . G A 3410.77 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;QD=32.63;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,82:82:99:3439,246,0 +20 10071890 . T C 1974.77 . AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;QD=34.65;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2003,171,0 +20 10072505 . A G 2099.77 . AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.81;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2128,191,0 +20 10074187 . A G 3101.77 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.12;QD=30.36;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,79:79:99:3130,238,0 +20 10074240 . T C 3406.77 . AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.78;QD=28.13;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,85:85:99:3435,255,0 +20 10074716 . G A 2400.77 . AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.64;QD=27.97;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2429,192,0 +20 10074806 . G A 2817.77 . AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.35;QD=28.31;SOR=0.840 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2846,213,0 +20 10075043 . T C 2405.77 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.62;QD=35.21;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2434,184,0 +20 10075168 . C T 3612.77 . AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.35;QD=35.18;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3641,264,0 +20 10075508 . GA G 1928.73 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.17;QD=27.55;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1966,210,0 +20 10076250 . A G 1107.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.386e+00;DP=79;ExcessHet=3.0103;FS=7.546;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-1.423e+00;QD=14.02;ReadPosRankSum=0.270;SOR=0.344 GT:AD:DP:GQ:PL 0/1:40,39:79:99:1136,0,1339 +20 10076339 . A G 1309.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-02;DP=72;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-8.660e-01;QD=18.19;ReadPosRankSum=1.01;SOR=0.446 GT:AD:DP:GQ:PL 0/1:32,40:72:99:1338,0,1035 +20 10076399 . G A 1807.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.15;DP=94;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.23;ReadPosRankSum=-1.058e+00;SOR=0.952 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1836,0,1544 +20 10076989 . CA C 214.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.250e-01;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-4.730e-01;QD=10.74;ReadPosRankSum=-9.180e-01;SOR=0.560 GT:AD:DP:GQ:PL 0/1:7,13:30:99:211,0,335 +20 10077752 . T C 1345.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.503e+00;DP=79;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=17.04;ReadPosRankSum=-3.520e-01;SOR=1.251 GT:AD:DP:GQ:PL 0/1:34,45:79:99:1374,0,1187 +20 10079476 . T G 11.12 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e+00;DP=44;ExcessHet=3.0103;FS=57.922;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-8.260e-01;QD=0.25;ReadPosRankSum=1.53;SOR=4.970 GT:AD:DP:GQ:PL 0/1:33,11:44:39:39,0,1137 +20 10081750 . C A 1353.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DP=83;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.31;ReadPosRankSum=-4.060e-01;SOR=0.664 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1382,0,1525 +20 10081800 . C T 1109.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=68;ExcessHet=3.0103;FS=11.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.32;ReadPosRankSum=-2.622e+00;SOR=0.143 GT:AD:DP:GQ:PL 0/1:35,33:68:99:1138,0,1222 +20 10082892 . C T 1712.77 . AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.48;QD=29.59;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1741,132,0 +20 10085211 . A T 1210.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=76;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.028e+00;QD=15.93;ReadPosRankSum=-1.405e+00;SOR=0.723 GT:AD:DP:GQ:PL 0/1:40,36:76:99:1239,0,1443 +20 10086110 . G A 1274.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e-01;DP=81;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-6.800e-01;QD=15.74;ReadPosRankSum=0.170;SOR=0.495 GT:AD:DP:GQ:PL 0/1:43,38:81:99:1303,0,1506 +20 10086283 . G T 1025.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DP=84;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=1.89;SOR=0.529 GT:AD:DP:GQ:PL 0/1:52,32:84:99:1054,0,1771 +20 10086619 . T A 796.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=70;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.312e+00;QD=11.38;ReadPosRankSum=-7.600e-01;SOR=0.846 GT:AD:DP:GQ:PL 0/1:45,25:70:99:825,0,1603 +20 10086853 . G A 1002.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.91;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.770e-01;QD=13.74;ReadPosRankSum=-1.000e-01;SOR=0.767 GT:AD:DP:GQ:PL 0/1:41,32:73:99:1031,0,1280 +20 10086954 . G A 1095.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DP=68;ExcessHet=3.0103;FS=4.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.11;ReadPosRankSum=-5.340e-01;SOR=1.185 GT:AD:DP:GQ:PL 0/1:34,34:68:99:1124,0,1051 +20 10087230 . A G 1842.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407e+00;DP=96;ExcessHet=3.0103;FS=3.860;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=1.71;QD=19.20;ReadPosRankSum=0.307;SOR=0.960 GT:AD:DP:GQ:PL 0/1:42,54:96:99:1871,0,1428 +20 10087394 . T G 1688.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e+00;DP=84;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.21;QD=20.10;ReadPosRankSum=0.885;SOR=0.436 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1717,0,1186 +20 10087754 . T G 1347.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=79;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.19;QD=17.28;ReadPosRankSum=-5.510e-01;SOR=0.562 GT:AD:DP:GQ:PL 0/1:37,41:78:99:1376,0,1239 +20 10087804 . C T 1619.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DP=100;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=2.62;QD=16.20;ReadPosRankSum=0.341;SOR=0.369 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1648,0,1511 +20 10087820 . C CAG 428.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974e+00;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.422;QD=8.09;ReadPosRankSum=-3.570e-01;SOR=0.850 GT:AD:DP:GQ:PL 0/1:35,18:53:99:466,0,1168 +20 10088063 . C T 1417.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DP=93;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=0.515;QD=15.24;ReadPosRankSum=0.285;SOR=1.053 GT:AD:DP:GQ:PL 0/1:49,44:93:99:1446,0,1403 +20 10088699 . C T 776.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.80;DP=63;ExcessHet=3.0103;FS=16.952;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-3.140e+00;QD=12.53;ReadPosRankSum=-1.456e+00;SOR=1.914 GT:AD:DP:GQ:PL 0/1:36,26:62:99:805,0,1088 +20 10088730 . G A 972.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=52;ExcessHet=3.0103;FS=15.383;MLEAC=1;MLEAF=0.500;MQ=53.41;MQRankSum=-4.839e+00;QD=18.71;ReadPosRankSum=0.581;SOR=1.592 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,23:52:99:0|1:10088730_G_A:1001,0,1152 +20 10088736 . A C 1081.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=55;ExcessHet=3.0103;FS=9.673;MLEAC=1;MLEAF=0.500;MQ=52.17;MQRankSum=-5.169e+00;QD=19.67;ReadPosRankSum=0.573;SOR=0.851 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,27:55:99:0|1:10088730_G_A:1110,0,1194 +20 10088747 . A G 1111.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.877e+00;DP=55;ExcessHet=3.0103;FS=7.653;MLEAC=1;MLEAF=0.500;MQ=51.56;MQRankSum=-4.907e+00;QD=20.59;ReadPosRankSum=9.000e-03;SOR=1.092 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,29:54:99:0|1:10088730_G_A:1140,0,995 +20 10088799 . G A 1018.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.50;DP=53;ExcessHet=3.0103;FS=10.098;MLEAC=1;MLEAF=0.500;MQ=53.21;MQRankSum=-2.498e+00;QD=19.22;ReadPosRankSum=1.08;SOR=1.003 GT:AD:DP:GQ:PL 0/1:22,31:53:99:1047,0,617 +20 10088895 . C T 532.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=0.577;QD=12.99;ReadPosRankSum=1.30;SOR=0.653 GT:AD:DP:GQ:PL 0/1:23,18:41:99:561,0,673 +20 10088968 . C CAAA 1175.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=62;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-4.750e+00;QD=22.18;ReadPosRankSum=2.42;SOR=1.012 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,23:53:99:0|1:10088968_C_CAAA:1213,0,1367 +20 10088980 . T C 1247.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585e+00;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.93;MQRankSum=-5.232e+00;QD=18.35;ReadPosRankSum=1.29;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,31:68:99:0|1:10088968_C_CAAA:1276,0,1627 +20 10088985 . T C 1178.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DP=74;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=50.91;MQRankSum=-5.248e+00;QD=15.93;ReadPosRankSum=1.23;SOR=0.742 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,32:74:99:0|1:10088968_C_CAAA:1207,0,1729 +20 10089441 . A G 1179.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.885e+00;DP=76;ExcessHet=3.0103;FS=6.071;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-9.480e-01;QD=15.52;ReadPosRankSum=-1.560e-01;SOR=1.363 GT:AD:DP:GQ:PL 0/1:37,39:76:99:1208,0,1313 +20 10089525 . C T 1548.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.86;DP=81;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=1.53;QD=19.12;ReadPosRankSum=0.862;SOR=0.617 GT:AD:DP:GQ:PL 0/1:38,43:81:99:1577,0,1088 +20 10090289 . CA C 384.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.39;QD=11.32;ReadPosRankSum=0.048;SOR=0.859 GT:AD:DP:GQ:PL 0/1:14,20:38:99:422,0,230 +20 10090764 . A G 840.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659e+00;DP=63;ExcessHet=3.0103;FS=4.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=13.35;ReadPosRankSum=1.21;SOR=0.310 GT:AD:DP:GQ:PL 0/1:34,29:63:99:869,0,1207 +20 10090970 . T C 1257.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DP=69;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=1.51;QD=18.23;ReadPosRankSum=-7.200e-02;SOR=0.518 GT:AD:DP:GQ:PL 0/1:33,36:69:99:1286,0,1092 +20 10091214 . C T 1249.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-9.160e-01;QD=17.85;ReadPosRankSum=-3.500e-02;SOR=0.625 GT:AD:DP:GQ:PL 0/1:33,37:70:99:1278,0,1110 +20 10092415 . A G 1635.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.731e+00;DP=101;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.20;ReadPosRankSum=0.082;SOR=0.665 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1664,0,1902 +20 10092927 . G T 106.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507e+00;DP=73;ExcessHet=3.0103;FS=60.191;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-3.009e+00;QD=1.48;ReadPosRankSum=-2.200e-01;SOR=5.279 GT:AD:DP:GQ:PL 0/1:59,13:72:99:135,0,1864 +20 10093568 . GT G 326.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=0.410;QD=9.61;ReadPosRankSum=1.26;SOR=0.751 GT:AD:DP:GQ:PL 0/1:17,17:42:99:364,0,386 +20 10093923 . T A 1075.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DP=67;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=0.358;QD=16.06;ReadPosRankSum=-1.583e+00;SOR=0.772 GT:AD:DP:GQ:PL 0/1:35,32:67:99:1104,0,1257 +20 10094251 . T A 1270.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=62;ExcessHet=3.0103;FS=11.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=20.50;ReadPosRankSum=1.81;SOR=1.211 GT:AD:DP:GQ:PL 0/1:26,36:62:99:1299,0,781 +20 10094582 . A G 923.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388e+00;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=1.27;QD=13.39;ReadPosRankSum=-1.800e-02;SOR=0.772 GT:AD:DP:GQ:PL 0/1:39,30:69:99:952,0,1350 +20 10094774 . C T 1036.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-7.840e-01;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.962;QD=13.82;ReadPosRankSum=0.197;SOR=0.690 GT:AD:DP:GQ:PL 0/1:40,35:75:99:1065,0,1282 +20 10095432 . GTGATGATGA G 839.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DP=77;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-4.431e+00;QD=16.79;ReadPosRankSum=0.396;SOR=0.460 GT:AD:DP:GQ:PL 0/1:27,23:50:99:877,0,2108 +20 10095741 . A G 1075.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340e-01;DP=71;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-2.313e+00;QD=15.37;ReadPosRankSum=-5.000e-01;SOR=0.515 GT:AD:DP:GQ:PL 0/1:36,34:70:99:1104,0,1233 +20 10096293 . C T 1355.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=1.40;QD=18.08;ReadPosRankSum=-1.135e+00;SOR=0.638 GT:AD:DP:GQ:PL 0/1:37,38:75:99:1384,0,1258 +20 10096596 . C T 1562.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=0.612;QD=17.96;ReadPosRankSum=-1.700e-01;SOR=0.640 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1591,0,1273 +20 10096768 . A C 1682.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.764e+00;DP=91;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-1.609e+00;QD=18.49;ReadPosRankSum=0.613;SOR=0.445 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1711,0,1452 +20 10096899 . G T 1614.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DP=79;ExcessHet=3.0103;FS=9.606;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-1.387e+00;QD=20.44;ReadPosRankSum=0.422;SOR=1.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,40:79:99:0|1:10096899_G_T:1643,0,1520 +20 10096905 . TA T 1600.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-7.550e-01;DP=83;ExcessHet=3.0103;FS=11.159;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.677e+00;QD=19.29;ReadPosRankSum=0.461;SOR=1.775 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,43:83:99:0|1:10096899_G_T:1638,0,1623 +20 10096933 . G C 1511.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914e+00;DP=85;ExcessHet=3.0103;FS=23.320;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-1.802e+00;QD=17.79;ReadPosRankSum=0.334;SOR=1.534 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,41:85:99:0|1:10096933_G_C:1540,0,1770 +20 10096958 . G A 1766.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DP=92;ExcessHet=3.0103;FS=16.778;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-1.701e+00;QD=19.20;ReadPosRankSum=-1.833e+00;SOR=1.387 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,47:92:99:0|1:10096933_G_C:1795,0,1629 +20 10097075 . T G 1445.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533e+00;DP=92;ExcessHet=3.0103;FS=6.613;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-1.389e+00;QD=15.71;ReadPosRankSum=0.082;SOR=0.628 GT:AD:DP:GQ:PL 0/1:44,48:92:99:1474,0,1482 +20 10097101 . C CTTT 1091.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134e+00;DP=76;ExcessHet=3.0103;FS=5.060;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-2.428e+00;QD=18.20;ReadPosRankSum=2.09;SOR=0.277 GT:AD:DP:GQ:PL 0/1:34,26:64:99:1129,0,1306 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 1054.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DP=89;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-6.464e+00;QD=11.85;ReadPosRankSum=-3.097e+00;SOR=0.948 GT:AD:DP:GQ:PL 0/1:57,32:89:99:1092,0,2241 +20 10097437 . TTTTC *,T 2089.73 . AC=1,1;AF=0.500,0.500;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.48;QD=32.25;SOR=1.877 GT:AD:DP:GQ:PL 1/2:0,32,23:55:99:2127,940,1799,1195,0,1125 +20 10097626 . C A 626.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DP=48;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-1.331e+00;QD=13.06;ReadPosRankSum=1.01;SOR=0.324 GT:AD:DP:GQ:PL 0/1:28,20:48:99:655,0,957 +20 10097789 . T C 688.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157e+00;DP=57;ExcessHet=3.0103;FS=5.374;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-2.805e+00;QD=12.08;ReadPosRankSum=0.220;SOR=0.756 GT:AD:DP:GQ:PL 0/1:34,23:57:99:717,0,1190 +20 10097928 . G A 570.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203e+00;DP=36;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-1.654e+00;QD=15.85;ReadPosRankSum=-7.900e-02;SOR=0.951 GT:AD:DP:GQ:PL 0/1:17,19:36:99:599,0,586 +20 10098110 . G C 586.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DP=36;ExcessHet=3.0103;FS=6.658;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-1.477e+00;QD=16.30;ReadPosRankSum=-7.300e-01;SOR=0.069 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,17:36:99:0|1:10098110_G_C:615,0,727 +20 10098135 . C A 471.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155e+00;DP=38;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=1.55;QD=12.41;ReadPosRankSum=-5.910e-01;SOR=0.075 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,14:38:99:0|1:10098110_G_C:500,0,964 +20 10098219 . TATATATA T 295.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-2.050e-01;QD=14.08;ReadPosRankSum=0.427;SOR=0.465 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,9:21:99:0|1:10098219_TATATATA_T:333,0,461 +20 10098237 . A T 244.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=6.000e-03;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=-1.742e+00;QD=18.83;ReadPosRankSum=0.277;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:6,7:13:99:0|1:10098219_TATATATA_T:273,0,273 +20 10098265 . T C 133.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQRankSum=-1.834e+00;QD=22.29;ReadPosRankSum=0.00;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,4:6:59:0|1:10098219_TATATATA_T:162,0,59 +20 10098885 . C CA 433.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.89;MQRankSum=-4.449e+00;QD=13.99;ReadPosRankSum=-1.073e+00;SOR=0.518 GT:AD:DP:GQ:PL 0/1:17,14:31:99:471,0,572 +20 10098945 . T C 452.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DP=22;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-2.504e+00;QD=20.58;ReadPosRankSum=1.04;SOR=2.368 GT:AD:DP:GQ:PL 0/1:9,13:22:99:481,0,248 +20 10098987 . C T 379.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DP=24;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.500;MQ=51.88;MQRankSum=-2.734e+00;QD=15.82;ReadPosRankSum=0.436;SOR=2.925 GT:AD:DP:GQ:PL 0/1:11,13:24:99:408,0,350 +20 10099029 . T C 334.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809e+00;DP=28;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-3.641e+00;QD=11.96;ReadPosRankSum=-1.224e+00;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,10:28:99:0|1:10099029_T_C:363,0,768 +20 10099034 . C A 334.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DP=28;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-3.641e+00;QD=11.96;ReadPosRankSum=-1.850e+00;SOR=1.721 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,10:28:99:0|1:10099029_T_C:363,0,768 +20 10099044 . A C 334.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-4.418e+00;QD=13.95;ReadPosRankSum=-2.207e+00;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,9:24:99:0|1:10099029_T_C:363,0,768 +20 10099046 . T C 304.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165e+00;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-4.418e+00;QD=12.70;ReadPosRankSum=-2.297e+00;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,9:24:99:0|1:10099029_T_C:333,0,603 +20 10099055 . T C 256.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554e+00;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.46;MQRankSum=-4.316e+00;QD=11.16;ReadPosRankSum=-1.970e+00;SOR=0.665 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,8:23:99:0|1:10099029_T_C:285,0,673 +20 10099079 . C T 116.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DP=29;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-2.821e+00;QD=4.03;ReadPosRankSum=0.969;SOR=1.289 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,6:29:99:0|1:10099029_T_C:145,0,886 +20 10099111 . T TTTTGTTTG 656.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207e+00;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.12;MQRankSum=-4.071e+00;QD=18.76;ReadPosRankSum=-2.730e-01;SOR=0.511 GT:AD:DP:GQ:PL 0/1:22,13:35:99:694,0,802 +20 10099140 . G T 1005.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e-01;DP=62;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-2.469e+00;QD=16.22;ReadPosRankSum=0.338;SOR=1.114 GT:AD:DP:GQ:PL 0/1:30,32:62:99:1034,0,931 +20 10099190 . G T 1034.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-02;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-1.711e+00;QD=15.92;ReadPosRankSum=-1.260e+00;SOR=0.776 GT:AD:DP:GQ:PL 0/1:33,32:65:99:1063,0,1154 +20 10099220 . A G 577.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664e+00;DP=45;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-2.596e+00;QD=12.84;ReadPosRankSum=0.629;SOR=0.519 GT:AD:DP:GQ:PL 0/1:25,20:45:99:606,0,873 +20 10099250 . G A 699.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DP=37;ExcessHet=3.0103;FS=7.195;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-2.272e+00;QD=18.91;ReadPosRankSum=0.583;SOR=0.162 GT:AD:DP:GQ:PL 0/1:16,21:37:99:728,0,424 +20 10099535 . G A 1335.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.03;DP=65;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-1.418e+00;QD=20.55;ReadPosRankSum=-7.770e-01;SOR=0.408 GT:AD:DP:GQ:PL 0/1:26,39:65:99:1364,0,686 +20 10099565 . C T 1346.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.59;DP=69;ExcessHet=3.0103;FS=8.736;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-1.266e+00;QD=19.52;ReadPosRankSum=1.23;SOR=0.191 GT:AD:DP:GQ:PL 0/1:31,38:69:99:1375,0,994 +20 10099755 . C T 1098.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DP=65;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-2.200e-02;QD=16.90;ReadPosRankSum=-2.300e-01;SOR=0.446 GT:AD:DP:GQ:PL 0/1:33,32:65:99:1127,0,1148 +20 10099832 . A G 1073.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563e+00;DP=72;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=0.869;QD=14.91;ReadPosRankSum=-1.023e+00;SOR=0.871 GT:AD:DP:GQ:PL 0/1:39,33:72:99:1102,0,1430 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/vidmap.updated.json b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/vidmap.updated.json new file mode 100644 index 00000000000..c2f56d48217 --- /dev/null +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/vidmap.updated.json @@ -0,0 +1,318 @@ +{ + "fields": [ + { + "name": "ID", + "type": [ + "char" + ], + "length": [ + { + "variable_length_descriptor": "var" + } + ] + }, + { + "name": "LowQual", + "type": [ + "int" + ], + "vcf_field_class": [ + "FILTER" + ] + }, + { + "name": "AD", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "R" + } + ] + }, + { + "name": "GQ", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "GT", + "type": [ + "int" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "PP" + } + ] + }, + { + "name": "MIN_DP", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "PGT", + "type": [ + "String" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "VAR" + } + ] + }, + { + "name": "PID", + "type": [ + "String" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "VAR" + } + ] + }, + { + "name": "PL", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "G" + } + ] + }, + { + "name": "SB", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "FORMAT" + ], + "length": [ + { + "variable_length_descriptor": "4" + } + ] + }, + { + "name": "BaseQRankSum", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "ClippingRankSum", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "DP", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "FORMAT", + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "DS", + "type": [ + "Flag" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "END", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "ExcessHet", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "InbreedingCoeff", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "MLEAC", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "A" + } + ] + }, + { + "name": "MLEAF", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "A" + } + ] + }, + { + "name": "MQRankSum", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + }, + { + "name": "RAW_MQandDP", + "type": [ + "Integer" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "2" + } + ], + "VCF_field_combine_operation": "element_wise_sum" + }, + { + "name": "ReadPosRankSum", + "type": [ + "Float" + ], + "vcf_field_class": [ + "INFO" + ], + "length": [ + { + "variable_length_descriptor": "1" + } + ] + } + ], + "contigs": [ + { + "name": "20", + "length": 63025520, + "tiledb_column_offset": 0 + }, + { + "name": "21", + "length": 48129895, + "tiledb_column_offset": 63025520 + } + ] +} diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testJustOneSample.expected.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testJustOneSample.expected.g.vcf index 3edd30b356e..b929f006ecb 100755 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testJustOneSample.expected.g.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testJustOneSample.expected.g.vcf @@ -17,20 +17,21 @@ ##INFO= ##INFO= ##INFO= -##INFO= +##INFO= ##INFO= +##INFO= ##INFO= ##INFO= ##contig= ##source=SelectVariants #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA1 chr20 69485 . G . . END=69510 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 -chr20 69511 . A G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;ReadPosRankSum=1.689 GT:AD:DP:GQ:PL:SB 1/1:1,79,0:80:99:2284,207,0,2287,237,2316:0,1,46,33 +chr20 69511 . A G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;RAW_MQandDP=2546.10,82;ReadPosRankSum=1.689 GT:AD:DP:GQ:PL:SB 1/1:1,79,0:80:99:2284,207,0,2287,237,2316:0,1,46,33 chr20 69512 . A . . END=69521 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 chr20 69522 . A . . END=69635 GT:DP:GQ:MIN_DP:PL 0/0:7:0:6:0,0,0 chr20 69762 . A . . END=69762 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 chr20 69763 . A . . END=69766 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,253 chr20 69767 . A . . END=69770 GT:DP:GQ:MIN_DP:PL 0/0:7:12:7:0,12,180 -chr20 69771 . TAAAAA T, 0.61 . DP=7;MQ=34.15;MQRankSum=1.300;MQ_DP=7;ReadPosRankSum=1.754 GT:AD:DP:GQ:PL:SB 0/1:4,3,0:7:20:20,0,119,101,128,229:0,4,0,3 +chr20 69771 . TAAAAA T, 0.61 . DP=7;MQ=34.15;MQRankSum=1.300;MQ_DP=7;RAW_MQandDP=239.05,7;ReadPosRankSum=1.754 GT:AD:DP:GQ:PL:SB 0/1:4,3,0:7:20:20,0,119,101,128,229:0,4,0,3 chr20 69777 . G . . END=69783 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,0 -chr20 69785 . T G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;ReadPosRankSum=1.689 GT:DP:GQ:PL:SB 1/1:80:99:2284,207,0,2287,237,2316:0,1,46,33 +chr20 69785 . T G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;RAW_MQandDP=2546.10,82;ReadPosRankSum=1.689 GT:DP:GQ:PL:SB 1/1:80:99:2284,207,0,2287,237,2316:0,1,46,33 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf index 9a7322be47d..92a6b8df3a3 100755 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf @@ -25,14 +25,16 @@ ##INFO= ##INFO= ##INFO= +##INFO= ##INFO= ##INFO= ##INFO= +##INFO= ##INFO= ##INFO= ##contig= ##reference=file:///seq/references/Homo_sapiens_assembly38/v0/Homo_sapiens_assembly38.fasta ##source=SelectVariants #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HK017-0046 -chr20 1133569 . A ATATATATATATATATATATTT, 240.77 . DP=22;MQRankSum=1.380;MQ_DP=22;RAW_MQ=69700.00;ReadPosRankSum=0.000 GT:AD:DP:GQ:PL:SB 0/1:2,4,0:6:30:269,0,253,30,51,87:0,2,3,1 -chr20 1133750 . A G,AGAATGGAATG, 408.79 . DP=121;MQ=37.23;MQ_DP=121 GT:AD:DP:GQ:PL:SB 1/3:0,6,0,0:6:9:436,21,9,291,45,834,242,0,270,220:0,0,5,1 +chr20 1133569 . A ATATATATATATATATATATTT, 240.77 . DP=22;MQRankSum=1.380;MQ_DP=22;RAW_MQandDP=69700.00,22;ReadPosRankSum=0.000 GT:AD:DP:GQ:PL:SB 0/1:2,4,0:6:30:269,0,253,30,51,87:0,2,3,1 +chr20 1133750 . A G,AGAATGGAATG, 408.79 . DP=121;MQ=37.23;MQ_DP=121;RAW_MQandDP=4504.83,121 GT:AD:DP:GQ:PL:SB 1/3:0,6,0,0:6:9:436,21,9,291,45,834,242,0,270,220:0,0,5,1 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testOneSampleAsForGnomAD.expected.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testOneSampleAsForGnomAD.expected.g.vcf index d6bc2119206..2be550c8bf6 100755 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testOneSampleAsForGnomAD.expected.g.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testOneSampleAsForGnomAD.expected.g.vcf @@ -17,20 +17,21 @@ ##INFO= ##INFO= ##INFO= -##INFO= +##INFO= ##INFO= +##INFO= ##INFO= ##INFO= ##contig= ##source=SelectVariants #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA1 chr20 69485 . G . . END=69510 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 -chr20 69511 . A G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;QUALapprox=2284;ReadPosRankSum=1.689;VarDP=80 GT:AD:DP:GQ:PL:SB 1/1:1,79,0:80:99:2284,207,0,2287,237,2316:0,1,46,33 +chr20 69511 . A G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;QUALapprox=2284;RAW_MQandDP=2546.10,82;ReadPosRankSum=1.689;VarDP=80 GT:AD:DP:GQ:PL:SB 1/1:1,79,0:80:99:2284,207,0,2287,237,2316:0,1,46,33 chr20 69512 . A . . END=69521 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 chr20 69549 . T . . END=69634 GT:DP:GQ:MIN_DP:PL 0/0:6:16:6:0,16,90 -chr20 69635 . A T, 0.06 . DP=7;MQ=34.15;MQRankSum=1.300;MQ_DP=7;QUALapprox=10;ReadPosRankSum=1.754;VarDP=7 GT:AD:DP:GQ:PL:SB 0/1:4,3,0:7:10:10,0,119,101,128,229:0,4,0,3 +chr20 69635 . A T, 0.06 . DP=7;MQ=34.15;MQRankSum=1.300;MQ_DP=7;QUALapprox=10;RAW_MQandDP=239.05,7;ReadPosRankSum=1.754;VarDP=7 GT:AD:DP:GQ:PL:SB 0/1:4,3,0:7:10:10,0,119,101,128,229:0,4,0,3 chr20 69762 . A . . END=69762 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 chr20 69763 . A . . END=69766 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,253 chr20 69767 . A . . END=69770 GT:DP:GQ:MIN_DP:PL 0/0:7:12:7:0,12,180 -chr20 69771 . TAAAAA T, 0.61 . DP=7;MQ=34.15;MQRankSum=1.300;MQ_DP=7;QUALapprox=20;ReadPosRankSum=1.754;VarDP=7 GT:AD:DP:GQ:PL:SB 0/1:4,3,0:7:20:20,0,119,101,128,229:0,4,0,3 -chr20 69785 . T G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;QUALapprox=2284;ReadPosRankSum=1.689;VarDP=80 GT:DP:GQ:PL:SB 1/1:80:99:2284,207,0,2287,237,2316:0,1,46,33 +chr20 69771 . TAAAAA T, 0.61 . DP=7;MQ=34.15;MQRankSum=1.300;MQ_DP=7;QUALapprox=20;RAW_MQandDP=239.05,7;ReadPosRankSum=1.754;VarDP=7 GT:AD:DP:GQ:PL:SB 0/1:4,3,0:7:20:20,0,119,101,128,229:0,4,0,3 +chr20 69785 . T G, 2255.77 . DP=82;MQ=31.05;MQRankSum=-0.866;MQ_DP=82;QUALapprox=2284;RAW_MQandDP=2546.10,82;ReadPosRankSum=1.689;VarDP=80 GT:DP:GQ:PL:SB 1/1:80:99:2284,207,0,2287,237,2316:0,1,46,33 diff --git a/src/testUtils/java/org/broadinstitute/hellbender/testutils/VariantContextTestUtils.java b/src/testUtils/java/org/broadinstitute/hellbender/testutils/VariantContextTestUtils.java index c0c226bb5fc..a84d5757b21 100644 --- a/src/testUtils/java/org/broadinstitute/hellbender/testutils/VariantContextTestUtils.java +++ b/src/testUtils/java/org/broadinstitute/hellbender/testutils/VariantContextTestUtils.java @@ -279,7 +279,6 @@ private static List attributeToList(final Object attribute){ public static void assertGenotypesAreEqual(final Genotype actual, final Genotype expected) { Assert.assertEquals(actual.getSampleName(), expected.getSampleName(), "Genotype names"); - Assert.assertEquals(actual.getGenotypeString(), expected.getGenotypeString(), "Genotype string"); Assert.assertTrue(CollectionUtils.isEqualCollection(actual.getAlleles(), expected.getAlleles()), "Genotype alleles"); Assert.assertEquals(actual.getGenotypeString(false), expected.getGenotypeString(false), "Genotype string"); Assert.assertEquals(actual.getType(), expected.getType(), "Genotype type"); From 840bb25a54206757ad47e97733ff0432514f43a1 Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Wed, 3 Oct 2018 13:44:06 -0400 Subject: [PATCH 2/7] Cleanup new GDB code --- .../hellbender/engine/FeatureDataSource.java | 178 +---------------- .../tools/genomicsdb/GenomicsDBUtils.java | 180 ++++++++++++++++++ 2 files changed, 186 insertions(+), 172 deletions(-) create mode 100644 src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBUtils.java diff --git a/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java b/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java index ff50d96ce43..ee7539d6b82 100644 --- a/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java +++ b/src/main/java/org/broadinstitute/hellbender/engine/FeatureDataSource.java @@ -1,11 +1,11 @@ package org.broadinstitute.hellbender.engine; -import com.netflix.servo.util.VisibleForTesting; +import com.intel.genomicsdb.model.GenomicsDBExportConfiguration; +import com.intel.genomicsdb.reader.GenomicsDBFeatureReader; import htsjdk.samtools.SAMSequenceDictionary; import htsjdk.samtools.util.IOUtil; import htsjdk.tribble.*; import htsjdk.variant.bcf2.BCF2Codec; -import htsjdk.variant.variantcontext.GenotypeLikelihoods; import htsjdk.variant.variantcontext.VariantContext; import htsjdk.variant.vcf.VCFHeader; import org.apache.logging.log4j.LogManager; @@ -20,26 +20,18 @@ import org.broadinstitute.hellbender.utils.gcs.BucketUtils; import org.broadinstitute.hellbender.utils.io.IOUtils; import org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher; - -import com.intel.genomicsdb.model.GenomicsDBExportConfiguration; -import com.intel.genomicsdb.reader.GenomicsDBFeatureReader; -import com.googlecode.protobuf.format.JsonFormat; -import com.intel.genomicsdb.model.GenomicsDBVidMapProto; -import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; +import static org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBUtils.*; import java.io.File; import java.io.IOException; import java.nio.channels.SeekableByteChannel; -import java.nio.file.Files; import java.nio.file.Path; -import java.nio.file.Paths; import java.util.Iterator; import java.util.List; import java.util.Optional; import java.util.function.Function; -import java.io.FileReader; -import java.util.HashMap; -import java.util.Map; + + /** * Enables traversals and queries over sources of Features, which are metadata associated with a location @@ -70,11 +62,6 @@ public final class FeatureDataSource implements GATKDataSource, AutoCloseable { private static final Logger logger = LogManager.getLogger(FeatureDataSource.class); - /** - * identifies a path as a GenomicsDB URI - */ - public static final String GENOMIC_DB_URI_SCHEME = "gendb://"; - /** * Feature reader used to retrieve records from our file */ @@ -290,14 +277,6 @@ public FeatureDataSource(final FeatureInput featureInput, final int queryLook this.queryLookaheadBases = queryLookaheadBases; } - /** - * @param path String containing the path to test - * @return true if path represent a GenomicsDB URI, otherwise false - */ - public static boolean isGenomicsDBPath(final String path) { - return path != null && path.startsWith(GENOMIC_DB_URI_SCHEME); - } - @SuppressWarnings("unchecked") private static FeatureReader getFeatureReader(final FeatureInput featureInput, final Class targetFeatureType, final Function cloudWrapper, @@ -370,8 +349,7 @@ private static FeatureReader getFeatureReader(final Featu } } - @VisibleForTesting - public static FeatureReader getGenomicsDBFeatureReader(final String path, final File reference) { + protected static FeatureReader getGenomicsDBFeatureReader(final String path, final File reference) { if (!isGenomicsDBPath(path)) { throw new IllegalArgumentException("Trying to create a GenomicsDBReader from a non-GenomicsDB input"); } @@ -407,150 +385,6 @@ public static FeatureReader getGenomicsDBFeatureReader(final Str } } - private static GenomicsDBExportConfiguration.ExportConfiguration createExportConfiguration(final File reference, final File workspace, - final File callsetJson, final File vidmapJson, - final File vcfHeader) { - final GenomicsDBExportConfiguration.ExportConfiguration.Builder exportConfigurationBuilder = - GenomicsDBExportConfiguration.ExportConfiguration.newBuilder() - .setWorkspace(workspace.getAbsolutePath()) - .setReferenceGenome(reference.getAbsolutePath()) - .setVidMappingFile(vidmapJson.getAbsolutePath()) - .setCallsetMappingFile(callsetJson.getAbsolutePath()) - .setVcfHeaderFilename(vcfHeader.getAbsolutePath()) - .setProduceGTField(false) - .setProduceGTWithMinPLValueForSpanningDeletions(false) - .setSitesOnlyQuery(false) - .setMaxDiploidAltAllelesThatCanBeGenotyped(GenotypeLikelihoods.MAX_DIPLOID_ALT_ALLELES_THAT_CAN_BE_GENOTYPED); - final Path arrayFolder = Paths.get(workspace.getAbsolutePath(), GenomicsDBConstants.DEFAULT_ARRAY_NAME).toAbsolutePath(); - - // For the multi-interval support, we create multiple arrays (directories) in a single workspace - - // one per interval. So, if you wish to import intervals ("chr1", [ 1, 100M ]) and ("chr2", [ 1, 100M ]), - // you end up with 2 directories named chr1$1$100M and chr2$1$100M. So, the array names depend on the - // partition bounds. - - // During the read phase, the user only supplies the workspace. The array names are obtained by scanning - // the entries in the workspace and reading the right arrays. For example, if you wish to read ("chr2", - // 50, 50M), then only the second array is queried. - - // In the previous version of the tool, the array name was a constant - genomicsdb_array. The new version - // will be backward compatible with respect to reads. Hence, if a directory named genomicsdb_array is found, - // the array name is passed to the GenomicsDBFeatureReader otherwise the array names are generated from the - // directory entries. - if (Files.exists(arrayFolder)) { - exportConfigurationBuilder.setArrayName(GenomicsDBConstants.DEFAULT_ARRAY_NAME); - } else { - exportConfigurationBuilder.setGenerateArrayNameFromPartitionBounds(true); - } - - //Sample code snippet to show how combine operations for INFO fields can be specified using the Protobuf - //API - // - //References - //GenomicsDB Protobuf structs: https://github.com/Intel-HLS/GenomicsDB/blob/master/src/resources/genomicsdb_vid_mapping.proto - //Protobuf generated Java code guide: - //https://developers.google.com/protocol-buffers/docs/javatutorial#the-protocol-buffer-api - //https://developers.google.com/protocol-buffers/docs/reference/java-generated - - //Parse the vid json and create an in-memory Protobuf structure representing the - //information in the JSON file - GenomicsDBVidMapProto.VidMappingPB vidMapPB; - try { - vidMapPB = getProtobufVidMappingFromJsonFile(vidmapJson); - } catch (final IOException e) { - throw new UserException("Could not open vid json file " + vidmapJson, e); - } - - //In vidMapPB, fields is a list of GenomicsDBVidMapProto.GenomicsDBFieldInfo objects - //Each GenomicsDBFieldInfo object contains information about a specific field in the TileDB/GenomicsDB store - //We iterate over the list and create a field name to list index map - final HashMap fieldNameToIndexInVidFieldsList = - getFieldNameToListIndexInProtobufVidMappingObject(vidMapPB); - - vidMapPB = updateINFOFieldCombineOperation(vidMapPB, fieldNameToIndexInVidFieldsList, - GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "element_wise_sum"); - - - if (vidMapPB != null) { - //Use rebuilt vidMap in exportConfiguration - //NOTE: this does NOT update the JSON file, the vidMapPB is a temporary structure that's passed to - //C++ modules of GenomicsDB for this specific query. Other queries will continue to use the information - //in the JSON file - exportConfigurationBuilder.setVidMapping(vidMapPB); - } - - return exportConfigurationBuilder.build(); - } - - /** - * Parse the vid json and create an in-memory Protobuf structure representing the - * information in the JSON file - * - * @param vidmapJson vid JSON file - * @return Protobuf object - */ - public static GenomicsDBVidMapProto.VidMappingPB getProtobufVidMappingFromJsonFile(final File vidmapJson) - throws IOException { - final GenomicsDBVidMapProto.VidMappingPB.Builder vidMapBuilder = GenomicsDBVidMapProto.VidMappingPB.newBuilder(); - try (final FileReader reader = new FileReader(vidmapJson)) { - JsonFormat.merge(reader, vidMapBuilder); - } - return vidMapBuilder.build(); - } - - /** - * In vidMapPB, fields is a list of GenomicsDBVidMapProto.GenomicsDBFieldInfo objects - * Each GenomicsDBFieldInfo object contains information about a specific field in the TileDB/GenomicsDB store - * We iterate over the list and create a field name to list index map - * - * @param vidMapPB Protobuf vid mapping object - * @return map from field name to index in vidMapPB.fields list - */ - public static HashMap getFieldNameToListIndexInProtobufVidMappingObject( - final GenomicsDBVidMapProto.VidMappingPB vidMapPB) { - final HashMap fieldNameToIndexInVidFieldsList = new HashMap<>(); - for (int fieldIdx = 0; fieldIdx < vidMapPB.getFieldsCount(); ++fieldIdx) { - fieldNameToIndexInVidFieldsList.put(vidMapPB.getFields(fieldIdx).getName(), fieldIdx); - } - return fieldNameToIndexInVidFieldsList; - } - - /** - * Update vid Protobuf object with new combine operation for field - * - * @param vidMapPB input vid object - * @param fieldNameToIndexInVidFieldsList name to index in list - * @param fieldName INFO field name - * @param newCombineOperation combine op ("sum", "median") - * @return updated vid Protobuf object if field exists, else null - */ - public static GenomicsDBVidMapProto.VidMappingPB updateINFOFieldCombineOperation( - final GenomicsDBVidMapProto.VidMappingPB vidMapPB, - final Map fieldNameToIndexInVidFieldsList, - final String fieldName, - final String newCombineOperation) { - final int fieldIdx = fieldNameToIndexInVidFieldsList.containsKey(fieldName) - ? fieldNameToIndexInVidFieldsList.get(fieldName) : -1; - if (fieldIdx >= 0) { - //Would need to rebuild vidMapPB - so get top level builder first - final GenomicsDBVidMapProto.VidMappingPB.Builder updatedVidMapBuilder = vidMapPB.toBuilder(); - //To update the list element corresponding to fieldName, we get the builder for that specific list element - final GenomicsDBVidMapProto.GenomicsDBFieldInfo.Builder fieldBuilder = - updatedVidMapBuilder.getFieldsBuilder(fieldIdx); - //And update its combine operation - fieldBuilder.setVCFFieldCombineOperation(newCombineOperation); - - //Shorter way of writing the same operation - /* - updatedVidMapBuilder.getFieldsBuilder(fieldIdx) - .setVCFFieldCombineOperation(newCombineOperation); - */ - - //Rebuild full vidMap - return updatedVidMapBuilder.build(); - } - return null; - } - /** * Returns the sequence dictionary for this source of Features. * Uses the dictionary from the VCF header (if present) for variant inputs, diff --git a/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBUtils.java b/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBUtils.java new file mode 100644 index 00000000000..0ce0adcc500 --- /dev/null +++ b/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBUtils.java @@ -0,0 +1,180 @@ +package org.broadinstitute.hellbender.tools.genomicsdb; + +import com.googlecode.protobuf.format.JsonFormat; +import com.intel.genomicsdb.model.GenomicsDBExportConfiguration; +import com.intel.genomicsdb.model.GenomicsDBVidMapProto; +import htsjdk.variant.variantcontext.GenotypeLikelihoods; +import org.broadinstitute.hellbender.exceptions.UserException; +import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; + +import java.io.File; +import java.io.FileReader; +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.HashMap; +import java.util.Map; + +/** + * Utility class containing various methods for working with GenomicsDB + * Contains code to modify the GenomicsDB query output format using the Protobuf API + * + * References: + * GenomicsDB Protobuf structs: https://github.com/Intel-HLS/GenomicsDB/blob/master/src/resources/genomicsdb_vid_mapping.proto + * Protobuf generated Java code guide: + * https://developers.google.com/protocol-buffers/docs/javatutorial#the-protocol-buffer-api + * https://developers.google.com/protocol-buffers/docs/reference/java-generated + */ +public class GenomicsDBUtils { + + /** + * identifies a path as a GenomicsDB URI + */ + public static final String GENOMIC_DB_URI_SCHEME = "gendb://"; + + /** + * @param path String containing the path to test + * @return true if path represent a GenomicsDB URI, otherwise false + */ + public static boolean isGenomicsDBPath(final String path) { + return path != null && path.startsWith(GENOMIC_DB_URI_SCHEME); + } + + /** + * + * @param reference reference sequence + * @param workspace path to the GenomicsDB workspace + * @param callsetJson path to the GenomicsDB callset JSON + * @param vidmapJson path to the GenomicsDB vidmap JSON + * @param vcfHeader VCF with header information to use for header lines on export + * @return a configuration to determine the output format when the GenomicsDB is queried + */ + public static GenomicsDBExportConfiguration.ExportConfiguration createExportConfiguration(final File reference, final File workspace, + final File callsetJson, final File vidmapJson, + final File vcfHeader) { + final GenomicsDBExportConfiguration.ExportConfiguration.Builder exportConfigurationBuilder = + GenomicsDBExportConfiguration.ExportConfiguration.newBuilder() + .setWorkspace(workspace.getAbsolutePath()) + .setReferenceGenome(reference.getAbsolutePath()) + .setVidMappingFile(vidmapJson.getAbsolutePath()) + .setCallsetMappingFile(callsetJson.getAbsolutePath()) + .setVcfHeaderFilename(vcfHeader.getAbsolutePath()) + .setProduceGTField(false) + .setProduceGTWithMinPLValueForSpanningDeletions(false) + .setSitesOnlyQuery(false) + .setMaxDiploidAltAllelesThatCanBeGenotyped(GenotypeLikelihoods.MAX_DIPLOID_ALT_ALLELES_THAT_CAN_BE_GENOTYPED); + final Path arrayFolder = Paths.get(workspace.getAbsolutePath(), GenomicsDBConstants.DEFAULT_ARRAY_NAME).toAbsolutePath(); + + // For the multi-interval support, we create multiple arrays (directories) in a single workspace - + // one per interval. So, if you wish to import intervals ("chr1", [ 1, 100M ]) and ("chr2", [ 1, 100M ]), + // you end up with 2 directories named chr1$1$100M and chr2$1$100M. So, the array names depend on the + // partition bounds. + + // During the read phase, the user only supplies the workspace. The array names are obtained by scanning + // the entries in the workspace and reading the right arrays. For example, if you wish to read ("chr2", + // 50, 50M), then only the second array is queried. + + // In the previous version of the tool, the array name was a constant - genomicsdb_array. The new version + // will be backward compatible with respect to reads. Hence, if a directory named genomicsdb_array is found, + // the array name is passed to the GenomicsDBFeatureReader otherwise the array names are generated from the + // directory entries. + if (Files.exists(arrayFolder)) { + exportConfigurationBuilder.setArrayName(GenomicsDBConstants.DEFAULT_ARRAY_NAME); + } else { + exportConfigurationBuilder.setGenerateArrayNameFromPartitionBounds(true); + } + + //Parse the vid json and create an in-memory Protobuf structure representing the information in the JSON file + GenomicsDBVidMapProto.VidMappingPB vidMapPB; + try { + vidMapPB = getProtobufVidMappingFromJsonFile(vidmapJson); + } catch (final IOException e) { + throw new UserException("Could not open vid json file " + vidmapJson, e); + } + + //In vidMapPB, fields is a list of GenomicsDBVidMapProto.GenomicsDBFieldInfo objects + //Each GenomicsDBFieldInfo object contains information about a specific field in the TileDB/GenomicsDB store + //We iterate over the list and create a field name to list index map + final HashMap fieldNameToIndexInVidFieldsList = + getFieldNameToListIndexInProtobufVidMappingObject(vidMapPB); + + vidMapPB = updateINFOFieldCombineOperation(vidMapPB, fieldNameToIndexInVidFieldsList, + GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "element_wise_sum"); + + + if (vidMapPB != null) { + //Use rebuilt vidMap in exportConfiguration + //NOTE: this does NOT update the JSON file, the vidMapPB is a temporary structure that's passed to + //C++ modules of GenomicsDB for this specific query. Other queries will continue to use the information + //in the JSON file + exportConfigurationBuilder.setVidMapping(vidMapPB); + } + + return exportConfigurationBuilder.build(); + } + + /** + * Parse the vid json and create an in-memory Protobuf structure representing the + * information in the JSON file + * + * @param vidmapJson vid JSON file + * @return Protobuf object + */ + public static GenomicsDBVidMapProto.VidMappingPB getProtobufVidMappingFromJsonFile(final File vidmapJson) + throws IOException { + final GenomicsDBVidMapProto.VidMappingPB.Builder vidMapBuilder = GenomicsDBVidMapProto.VidMappingPB.newBuilder(); + try (final FileReader reader = new FileReader(vidmapJson)) { + JsonFormat.merge(reader, vidMapBuilder); + } + return vidMapBuilder.build(); + } + + /** + * In vidMapPB, fields is a list of GenomicsDBVidMapProto.GenomicsDBFieldInfo objects + * Each GenomicsDBFieldInfo object contains information about a specific field in the TileDB/GenomicsDB store + * We iterate over the list and create a field name to list index map + * + * @param vidMapPB Protobuf vid mapping object + * @return map from field name to index in vidMapPB.fields list + */ + public static HashMap getFieldNameToListIndexInProtobufVidMappingObject( + final GenomicsDBVidMapProto.VidMappingPB vidMapPB) { + final HashMap fieldNameToIndexInVidFieldsList = new HashMap<>(); + for (int fieldIdx = 0; fieldIdx < vidMapPB.getFieldsCount(); ++fieldIdx) { + fieldNameToIndexInVidFieldsList.put(vidMapPB.getFields(fieldIdx).getName(), fieldIdx); + } + return fieldNameToIndexInVidFieldsList; + } + + /** + * Update vid Protobuf object with new combine operation for field + * + * @param vidMapPB input vid object + * @param fieldNameToIndexInVidFieldsList name to index in list + * @param fieldName INFO field name + * @param newCombineOperation combine op ("sum", "median") + * @return updated vid Protobuf object if field exists, else null + */ + public static GenomicsDBVidMapProto.VidMappingPB updateINFOFieldCombineOperation( + final GenomicsDBVidMapProto.VidMappingPB vidMapPB, + final Map fieldNameToIndexInVidFieldsList, + final String fieldName, + final String newCombineOperation) { + final int fieldIdx = fieldNameToIndexInVidFieldsList.containsKey(fieldName) + ? fieldNameToIndexInVidFieldsList.get(fieldName) : -1; + if (fieldIdx >= 0) { + //Would need to rebuild vidMapPB - so get top level builder first + final GenomicsDBVidMapProto.VidMappingPB.Builder updatedVidMapBuilder = vidMapPB.toBuilder(); + //To update the list element corresponding to fieldName, we get the builder for that specific list element + final GenomicsDBVidMapProto.GenomicsDBFieldInfo.Builder fieldBuilder = + updatedVidMapBuilder.getFieldsBuilder(fieldIdx); + //And update its combine operation + fieldBuilder.setVCFFieldCombineOperation(newCombineOperation); + + //Rebuild full vidMap + return updatedVidMapBuilder.build(); + } + return null; + } +} From 7b8f9b364f6ab3073eba63ecc787af3b87e09e60 Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Thu, 4 Oct 2018 14:38:15 -0400 Subject: [PATCH 3/7] Oops --- .../org/broadinstitute/hellbender/engine/FeatureInput.java | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/main/java/org/broadinstitute/hellbender/engine/FeatureInput.java b/src/main/java/org/broadinstitute/hellbender/engine/FeatureInput.java index 320f9c6ef94..a1112153f48 100644 --- a/src/main/java/org/broadinstitute/hellbender/engine/FeatureInput.java +++ b/src/main/java/org/broadinstitute/hellbender/engine/FeatureInput.java @@ -4,6 +4,7 @@ import htsjdk.tribble.Feature; import htsjdk.tribble.FeatureCodec; import org.broadinstitute.barclay.argparser.CommandLineException; +import org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBUtils; import org.broadinstitute.hellbender.utils.Utils; import org.broadinstitute.hellbender.utils.io.IOUtils; @@ -244,8 +245,8 @@ public void setFeatureCodecClass(final Class> featureCodecCla * creates a name from the given filePath by finding the absolute path of the given input */ private static String makeIntoAbsolutePath(final String filePath){ - if(FeatureDataSource.isGenomicsDBPath(filePath)){ - return FeatureDataSource.GENOMIC_DB_URI_SCHEME + new File(filePath.replace(FeatureDataSource.GENOMIC_DB_URI_SCHEME,"")).getAbsolutePath(); + if(GenomicsDBUtils.isGenomicsDBPath(filePath)){ + return GenomicsDBUtils.GENOMIC_DB_URI_SCHEME + new File(filePath.replace(GenomicsDBUtils.GENOMIC_DB_URI_SCHEME,"")).getAbsolutePath(); } else if (URI.create(filePath).getScheme() != null) { return IOUtils.getPath(filePath).toAbsolutePath().toUri().toString(); } else { From 7349076fb0a95bc6d63a759518b39e5cd975acde Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Thu, 4 Oct 2018 15:15:13 -0400 Subject: [PATCH 4/7] Oops test utils --- .../hellbender/testutils/GenomicsDBTestUtils.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/testUtils/java/org/broadinstitute/hellbender/testutils/GenomicsDBTestUtils.java b/src/testUtils/java/org/broadinstitute/hellbender/testutils/GenomicsDBTestUtils.java index 985e911d51f..5c2f2aad38d 100644 --- a/src/testUtils/java/org/broadinstitute/hellbender/testutils/GenomicsDBTestUtils.java +++ b/src/testUtils/java/org/broadinstitute/hellbender/testutils/GenomicsDBTestUtils.java @@ -3,6 +3,7 @@ import htsjdk.samtools.util.Locatable; import org.broadinstitute.hellbender.engine.FeatureDataSource; import org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBImport; +import org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBUtils; import org.broadinstitute.hellbender.utils.IntervalUtils; import java.io.File; @@ -21,7 +22,7 @@ private GenomicsDBTestUtils(){} * @return a string formatted as a genomicsDB uri pointing to the given workspace i.e "gendb:///pathTo/workspace */ public static String makeGenomicsDBUri(final File workspace){ - return FeatureDataSource.GENOMIC_DB_URI_SCHEME + workspace.getAbsolutePath(); + return GenomicsDBUtils.GENOMIC_DB_URI_SCHEME + workspace.getAbsolutePath(); } /** From 09831f0a71e46c65b80e38fa697411cfa1191e3c Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Fri, 5 Oct 2018 09:19:07 -0400 Subject: [PATCH 5/7] Last method call change? --- .../genomicsdb/GenomicsDBImportIntegrationTest.java | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java index 61f8f0c5471..e0658652c23 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java @@ -44,9 +44,6 @@ import java.util.stream.Collectors; import java.util.stream.Stream; -import static org.broadinstitute.hellbender.engine.FeatureDataSource.getFieldNameToListIndexInProtobufVidMappingObject; -import static org.broadinstitute.hellbender.engine.FeatureDataSource.updateINFOFieldCombineOperation; - @Test(groups = {"variantcalling"}) public final class GenomicsDBImportIntegrationTest extends CommandLineProgramTest { private static final String HG_00096 = largeFileTestDir + "gvcfs/HG00096.g.vcf.gz"; @@ -816,15 +813,15 @@ private static GenomicsDBFeatureReader .setGenerateArrayNameFromPartitionBounds(true); GenomicsDBVidMapProto.VidMappingPB vidMapPB = null; try { - vidMapPB = FeatureDataSource.getProtobufVidMappingFromJsonFile(new File(workspace, GenomicsDBConstants.DEFAULT_VIDMAP_FILE_NAME)); + vidMapPB = GenomicsDBUtils.getProtobufVidMappingFromJsonFile(new File(workspace, GenomicsDBConstants.DEFAULT_VIDMAP_FILE_NAME)); } catch (final IOException e) { throw new UserException("Could not open vid json file "+GenomicsDBConstants.DEFAULT_VIDMAP_FILE_NAME, e); } HashMap fieldNameToIndexInVidFieldsList = - getFieldNameToListIndexInProtobufVidMappingObject(vidMapPB); + GenomicsDBUtils.getFieldNameToListIndexInProtobufVidMappingObject(vidMapPB); - vidMapPB = updateINFOFieldCombineOperation(vidMapPB, fieldNameToIndexInVidFieldsList, + vidMapPB = GenomicsDBUtils.updateINFOFieldCombineOperation(vidMapPB, fieldNameToIndexInVidFieldsList, GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, "element_wise_sum"); if(vidMapPB != null) { From dbef45698a528a8121dd9b5d3b2febe1d0337720 Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Fri, 5 Oct 2018 13:27:03 -0400 Subject: [PATCH 6/7] Keep gnomAD v3 format annotations so we don't have to reprocess again --- .../tools/walkers/variantutils/ReblockGVCF.java | 6 ++++++ .../variantutils/ReblockGVCFIntegrationTest.java | 12 +++++++++++- .../testNonRefADCorrection.expected.g.vcf | 3 ++- 3 files changed, 19 insertions(+), 2 deletions(-) diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java index 913ecb5e156..ad6d2434cd4 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF.java @@ -151,6 +151,9 @@ public void onTraversalStart() { headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.VARIANT_DEPTH_KEY)); headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY)); headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.MAPPING_QUALITY_DEPTH)); //NOTE: this is deprecated, but keep until we reprocess all GVCFs + if (inputHeader.hasInfoLine(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)) { + headerLines.add(GATKVCFHeaderLines.getInfoLine(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)); //NOTE: this is deprecated, but keep until we reprocess all GVCFs + } if ( dbsnp.dbsnp != null ) { VCFStandardHeaderLines.addStandardInfoLines(headerLines, true, VCFConstants.DBSNP_KEY); @@ -413,6 +416,9 @@ protected VariantContext cleanUpHighQualityVariant(final VariantContext result, attrMap.put(GATKVCFConstants.RAW_MAPPING_QUALITY_WITH_DEPTH_KEY, String.format("%.2f,%d", rawMqValue, originalVC.getAttributeAsInt(VCFConstants.DEPTH_KEY,0))); attrMap.put(GATKVCFConstants.MAPPING_QUALITY_DEPTH, originalVC.getAttributeAsInt(VCFConstants.DEPTH_KEY,0)); //NOTE: this annotation is deprecated, but keep it here so we don't have to reprocess gnomAD v3 GVCFs again + if (originalVC.hasAttribute(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY)) { + attrMap.put(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, originalVC.getAttributeAsDouble(GATKVCFConstants.RAW_RMS_MAPPING_QUALITY_KEY, 0)); //NOTE: this annotation is deprecated, but keep it here so we don't have to reprocess gnomAD v3 GVCFs again + } if(allelesNeedSubsetting) { List newAlleleSet = new ArrayList<>(); diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java index b2a39049741..9cc4d922b2f 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java @@ -22,7 +22,7 @@ public class ReblockGVCFIntegrationTest extends CommandLineProgramTest { private static final String hg38_reference_20_21 = largeFileTestDir + "Homo_sapiens_assembly38.20.21.fasta"; private static final String b37_reference_20_21 = largeFileTestDir + "human_g1k_v37.20.21.fasta"; - @Test + @Test //covers inputs with "MQ" annotation public void testJustOneSample() throws Exception { final IntegrationTestSpec spec = new IntegrationTestSpec( "-L chr20:69485-69791 -O %s -R " + hg38_reference_20_21 + @@ -80,4 +80,14 @@ public void testNonRefADCorrection() throws Exception { Arrays.asList(getToolTestDataDir() + "testNonRefADCorrection.expected.g.vcf")); spec.executeTest("testNonRefADCorrection", this); } + + @Test //covers inputs with "RAW_MQ" annotation + public void testRawMQInput() throws Exception { + final IntegrationTestSpec spec = new IntegrationTestSpec( + "-O %s -R " + hg38_reference_20_21 + + " -V " + getToolTestDataDir() + "prod.chr20snippet.withRawMQ.g.vcf" + + " --" + StandardArgumentDefinitions.ADD_OUTPUT_VCF_COMMANDLINE + " false", + Arrays.asList(getToolTestDataDir() + "prod.chr20snippet.withRawMQ.expected.g.vcf")); + spec.executeTest("testNonRefADCorrection", this); + } } \ No newline at end of file diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf index 92a6b8df3a3..ce165287208 100755 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/testNonRefADCorrection.expected.g.vcf @@ -29,6 +29,7 @@ ##INFO= ##INFO= ##INFO= +##INFO= ##INFO= ##INFO= ##INFO= @@ -36,5 +37,5 @@ ##reference=file:///seq/references/Homo_sapiens_assembly38/v0/Homo_sapiens_assembly38.fasta ##source=SelectVariants #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HK017-0046 -chr20 1133569 . A ATATATATATATATATATATTT, 240.77 . DP=22;MQRankSum=1.380;MQ_DP=22;RAW_MQandDP=69700.00,22;ReadPosRankSum=0.000 GT:AD:DP:GQ:PL:SB 0/1:2,4,0:6:30:269,0,253,30,51,87:0,2,3,1 +chr20 1133569 . A ATATATATATATATATATATTT, 240.77 . DP=22;MQRankSum=1.380;MQ_DP=22;RAW_MQ=69700.00;RAW_MQandDP=69700.00,22;ReadPosRankSum=0.000 GT:AD:DP:GQ:PL:SB 0/1:2,4,0:6:30:269,0,253,30,51,87:0,2,3,1 chr20 1133750 . A G,AGAATGGAATG, 408.79 . DP=121;MQ=37.23;MQ_DP=121;RAW_MQandDP=4504.83,121 GT:AD:DP:GQ:PL:SB 1/3:0,6,0,0:6:9:436,21,9,291,45,834,242,0,270,220:0,0,5,1 From 49c474d27dc97f0209ccb9f1ecc786ca1f67e87a Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Fri, 5 Oct 2018 16:11:58 -0400 Subject: [PATCH 7/7] Actually add the files for the new test --- ...prod.chr20snippet.withRawMQ.expected.g.vcf | 72 + .../prod.chr20snippet.withRawMQ.g.vcf | 2000 +++++++++++++++++ 2 files changed, 2072 insertions(+) create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.expected.g.vcf create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.g.vcf diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.expected.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.expected.g.vcf new file mode 100644 index 00000000000..0ce4cb497ac --- /dev/null +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.expected.g.vcf @@ -0,0 +1,72 @@ +##fileformat=VCFv4.2 +##ALT= +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##GATKCommandLine.HaplotypeCaller= +##GATKCommandLine= +##GVCFBlock0-20=minGQ=0(inclusive),maxGQ=20(exclusive) +##GVCFBlock20-100=minGQ=20(inclusive),maxGQ=100(exclusive) +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##contig= +##reference=file:///Users/gauthier/workspaces/reblockGVCF/Homo_sapiens_assembly38.fasta +##source=SelectVariants +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NWD242235 +chr20 19994995 . G . . END=19996105 GT:DP:GQ:MIN_DP:PL 0/0:35:43:29:0,43,890 +chr20 19996106 . A G, 484.77 . DP=35;MQRankSum=1.225;MQ_DP=35;RAW_MQ=125316.00;RAW_MQandDP=125316.00,35;ReadPosRankSum=-1.190 GT:AD:DP:GQ:PL:SB 0/1:16,18,0:34:99:513,0,454,562,508,1070:10,6,8,10 +chr20 19996107 . G . . END=19997993 GT:DP:GQ:MIN_DP:PL 0/0:25:20:14:0,20,436 +chr20 19997994 . A . . END=19997994 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,581 +chr20 19997995 . A . . END=19999277 GT:DP:GQ:MIN_DP:PL 0/0:29:23:17:0,23,541 +chr20 19999278 . T . . END=19999278 GT:DP:GQ:MIN_DP:PL 0/0:24:8:24:0,8,657 +chr20 19999279 . A . . END=20001360 GT:DP:GQ:MIN_DP:PL 0/0:30:22:23:0,22,585 +chr20 20001361 . C . . END=20001361 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,825 +chr20 20001362 . CTT C, 112.77 . DP=22;MQRankSum=1.276;MQ_DP=22;RAW_MQ=79200.00;RAW_MQandDP=79200.00,22;ReadPosRankSum=-0.201 GT:AD:DP:GQ:PL:SB 0/1:7,7,0:14:99:141,0,151,162,172,334:3,4,1,6 +chr20 20001365 . T . . END=20001365 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,681 +chr20 20001366 . T . . END=20001389 GT:DP:GQ:MIN_DP:PL 0/0:27:53:24:0,53,834 +chr20 20001390 . C . . END=20001390 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,536 +chr20 20001391 . A . . END=20001396 GT:DP:GQ:MIN_DP:PL 0/0:25:29:24:0,29,653 +chr20 20001397 . C . . END=20001397 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,606 +chr20 20001398 . C . . END=20001400 GT:DP:GQ:MIN_DP:PL 0/0:28:53:26:0,53,773 +chr20 20001401 . C . . END=20001402 GT:DP:GQ:MIN_DP:PL 0/0:27:3:24:0,3,675 +chr20 20001403 . T . . END=20001403 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +chr20 20001404 . G . . END=20001404 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,614 +chr20 20001405 . T . . END=20001409 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,1035 +chr20 20001410 . A . . END=20001410 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,552 +chr20 20001411 . T . . END=20001411 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20001412 . A . . END=20001412 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,595 +chr20 20001413 . T . . END=20001413 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20001414 . A . . END=20001414 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,535 +chr20 20001415 . T . . END=20001417 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,859 +chr20 20001418 . C . . END=20001419 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,601 +chr20 20001420 . T . . END=20001423 GT:DP:GQ:MIN_DP:PL 0/0:26:25:25:0,25,638 +chr20 20001424 . A . . END=20001425 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,606 +chr20 20001426 . T . . END=20002377 GT:DP:GQ:MIN_DP:PL 0/0:30:26:17:0,26,522 +chr20 20002378 . AT A, 246.77 . DP=28;MQRankSum=0.684;MQ_DP=28;RAW_MQ=100800.00;RAW_MQandDP=100800.00,28;ReadPosRankSum=0.684 GT:AD:DP:GQ:PL:SB 0/1:14,11,0:25:99:275,0,369,317,403,720:7,7,7,4 +chr20 20002380 . T . . END=20002380 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,139 +chr20 20002381 . T . . END=20004700 GT:DP:GQ:MIN_DP:PL 0/0:32:29:22:0,29,620 +chr20 20004701 . CTT C,CT, 111.81 . DP=29;MQRankSum=1.826;MQ_DP=29;RAW_MQ=102400.00;RAW_MQandDP=102400.00,29;ReadPosRankSum=1.396 GT:AD:DP:GQ:PL:SB 1/2:2,4,6,0:12:20:140,60,222,20,0,25,115,97,43,138:1,1,0,10 +chr20 20004704 . T . . END=20004704 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,585 +chr20 20004705 . T . . END=20005011 GT:DP:GQ:MIN_DP:PL 0/0:25:32:14:0,32,442 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.g.vcf new file mode 100644 index 00000000000..f0e1ed9b31f --- /dev/null +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCF/prod.chr20snippet.withRawMQ.g.vcf @@ -0,0 +1,2000 @@ +##fileformat=VCFv4.2 +##ALT= +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##GATKCommandLine.HaplotypeCaller= +##GATKCommandLine= +##GVCFBlock0-1=minGQ=0(inclusive),maxGQ=1(exclusive) +##GVCFBlock1-2=minGQ=1(inclusive),maxGQ=2(exclusive) +##GVCFBlock10-11=minGQ=10(inclusive),maxGQ=11(exclusive) +##GVCFBlock11-12=minGQ=11(inclusive),maxGQ=12(exclusive) +##GVCFBlock12-13=minGQ=12(inclusive),maxGQ=13(exclusive) +##GVCFBlock13-14=minGQ=13(inclusive),maxGQ=14(exclusive) +##GVCFBlock14-15=minGQ=14(inclusive),maxGQ=15(exclusive) +##GVCFBlock15-16=minGQ=15(inclusive),maxGQ=16(exclusive) +##GVCFBlock16-17=minGQ=16(inclusive),maxGQ=17(exclusive) +##GVCFBlock17-18=minGQ=17(inclusive),maxGQ=18(exclusive) +##GVCFBlock18-19=minGQ=18(inclusive),maxGQ=19(exclusive) +##GVCFBlock19-20=minGQ=19(inclusive),maxGQ=20(exclusive) +##GVCFBlock2-3=minGQ=2(inclusive),maxGQ=3(exclusive) +##GVCFBlock20-21=minGQ=20(inclusive),maxGQ=21(exclusive) +##GVCFBlock21-22=minGQ=21(inclusive),maxGQ=22(exclusive) +##GVCFBlock22-23=minGQ=22(inclusive),maxGQ=23(exclusive) +##GVCFBlock23-24=minGQ=23(inclusive),maxGQ=24(exclusive) +##GVCFBlock24-25=minGQ=24(inclusive),maxGQ=25(exclusive) +##GVCFBlock25-26=minGQ=25(inclusive),maxGQ=26(exclusive) +##GVCFBlock26-27=minGQ=26(inclusive),maxGQ=27(exclusive) +##GVCFBlock27-28=minGQ=27(inclusive),maxGQ=28(exclusive) +##GVCFBlock28-29=minGQ=28(inclusive),maxGQ=29(exclusive) +##GVCFBlock29-30=minGQ=29(inclusive),maxGQ=30(exclusive) +##GVCFBlock3-4=minGQ=3(inclusive),maxGQ=4(exclusive) +##GVCFBlock30-31=minGQ=30(inclusive),maxGQ=31(exclusive) +##GVCFBlock31-32=minGQ=31(inclusive),maxGQ=32(exclusive) +##GVCFBlock32-33=minGQ=32(inclusive),maxGQ=33(exclusive) +##GVCFBlock33-34=minGQ=33(inclusive),maxGQ=34(exclusive) +##GVCFBlock34-35=minGQ=34(inclusive),maxGQ=35(exclusive) +##GVCFBlock35-36=minGQ=35(inclusive),maxGQ=36(exclusive) +##GVCFBlock36-37=minGQ=36(inclusive),maxGQ=37(exclusive) +##GVCFBlock37-38=minGQ=37(inclusive),maxGQ=38(exclusive) +##GVCFBlock38-39=minGQ=38(inclusive),maxGQ=39(exclusive) +##GVCFBlock39-40=minGQ=39(inclusive),maxGQ=40(exclusive) +##GVCFBlock4-5=minGQ=4(inclusive),maxGQ=5(exclusive) +##GVCFBlock40-41=minGQ=40(inclusive),maxGQ=41(exclusive) +##GVCFBlock41-42=minGQ=41(inclusive),maxGQ=42(exclusive) +##GVCFBlock42-43=minGQ=42(inclusive),maxGQ=43(exclusive) +##GVCFBlock43-44=minGQ=43(inclusive),maxGQ=44(exclusive) +##GVCFBlock44-45=minGQ=44(inclusive),maxGQ=45(exclusive) +##GVCFBlock45-46=minGQ=45(inclusive),maxGQ=46(exclusive) +##GVCFBlock46-47=minGQ=46(inclusive),maxGQ=47(exclusive) +##GVCFBlock47-48=minGQ=47(inclusive),maxGQ=48(exclusive) +##GVCFBlock48-49=minGQ=48(inclusive),maxGQ=49(exclusive) +##GVCFBlock49-50=minGQ=49(inclusive),maxGQ=50(exclusive) +##GVCFBlock5-6=minGQ=5(inclusive),maxGQ=6(exclusive) +##GVCFBlock50-51=minGQ=50(inclusive),maxGQ=51(exclusive) +##GVCFBlock51-52=minGQ=51(inclusive),maxGQ=52(exclusive) +##GVCFBlock52-53=minGQ=52(inclusive),maxGQ=53(exclusive) +##GVCFBlock53-54=minGQ=53(inclusive),maxGQ=54(exclusive) +##GVCFBlock54-55=minGQ=54(inclusive),maxGQ=55(exclusive) +##GVCFBlock55-56=minGQ=55(inclusive),maxGQ=56(exclusive) +##GVCFBlock56-57=minGQ=56(inclusive),maxGQ=57(exclusive) +##GVCFBlock57-58=minGQ=57(inclusive),maxGQ=58(exclusive) +##GVCFBlock58-59=minGQ=58(inclusive),maxGQ=59(exclusive) +##GVCFBlock59-60=minGQ=59(inclusive),maxGQ=60(exclusive) +##GVCFBlock6-7=minGQ=6(inclusive),maxGQ=7(exclusive) +##GVCFBlock60-70=minGQ=60(inclusive),maxGQ=70(exclusive) +##GVCFBlock7-8=minGQ=7(inclusive),maxGQ=8(exclusive) +##GVCFBlock70-80=minGQ=70(inclusive),maxGQ=80(exclusive) +##GVCFBlock8-9=minGQ=8(inclusive),maxGQ=9(exclusive) +##GVCFBlock80-90=minGQ=80(inclusive),maxGQ=90(exclusive) +##GVCFBlock9-10=minGQ=9(inclusive),maxGQ=10(exclusive) +##GVCFBlock90-99=minGQ=90(inclusive),maxGQ=99(exclusive) +##GVCFBlock99-2147483647=minGQ=99(inclusive),maxGQ=2147483647(exclusive) +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##contig= +##reference=file:///Users/gauthier/workspaces/reblockGVCF/Homo_sapiens_assembly38.fasta +##source=SelectVariants +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NWD242235 +chr20 19994995 . G . . END=19995070 GT:DP:GQ:MIN_DP:PL 0/0:41:99:35:0,105,1177 +chr20 19995071 . G . . END=19995071 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1087 +chr20 19995072 . A . . END=19995073 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +chr20 19995074 . C . . END=19995079 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +chr20 19995080 . G . . END=19995089 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 19995090 . G . . END=19995101 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +chr20 19995102 . C . . END=19995114 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +chr20 19995115 . A . . END=19995115 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1261 +chr20 19995116 . T . . END=19995138 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1122 +chr20 19995139 . G . . END=19995139 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1117 +chr20 19995140 . G . . END=19995157 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,102,1101 +chr20 19995158 . C . . END=19995158 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1281 +chr20 19995159 . T . . END=19995168 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,105,1575 +chr20 19995169 . G . . END=19995170 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +chr20 19995171 . C . . END=19995171 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +chr20 19995172 . C . . END=19995172 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +chr20 19995173 . C . . END=19995174 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1305 +chr20 19995175 . A . . END=19995189 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 19995190 . G . . END=19995190 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,1033 +chr20 19995191 . C . . END=19995191 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chr20 19995192 . A . . END=19995195 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1117 +chr20 19995196 . A . . END=19995196 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1113 +chr20 19995197 . A . . END=19995212 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1047 +chr20 19995213 . T . . END=19995213 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1132 +chr20 19995214 . A . . END=19995218 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1197 +chr20 19995219 . C . . END=19995219 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1097 +chr20 19995220 . T . . END=19995228 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1152 +chr20 19995229 . C . . END=19995229 GT:DP:GQ:MIN_DP:PL 0/0:38:74:38:0,74,1080 +chr20 19995230 . A . . END=19995231 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,105,1146 +chr20 19995232 . G . . END=19995232 GT:DP:GQ:MIN_DP:PL 0/0:34:43:34:0,43,1013 +chr20 19995233 . A . . END=19995234 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +chr20 19995235 . T . . END=19995235 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1176 +chr20 19995236 . A . . END=19995236 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +chr20 19995237 . A . . END=19995241 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +chr20 19995242 . C . . END=19995243 GT:DP:GQ:MIN_DP:PL 0/0:34:67:31:0,67,978 +chr20 19995244 . A . . END=19995244 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chr20 19995245 . G . . END=19995248 GT:DP:GQ:MIN_DP:PL 0/0:34:87:31:0,87,1305 +chr20 19995249 . C . . END=19995249 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1015 +chr20 19995250 . T . . END=19995250 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +chr20 19995251 . G . . END=19995251 GT:DP:GQ:MIN_DP:PL 0/0:33:50:33:0,50,968 +chr20 19995252 . T . . END=19995253 GT:DP:GQ:MIN_DP:PL 0/0:36:81:34:0,81,1215 +chr20 19995254 . T . . END=19995256 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +chr20 19995257 . T . . END=19995260 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +chr20 19995261 . T . . END=19995261 GT:DP:GQ:MIN_DP:PL 0/0:33:50:33:0,50,978 +chr20 19995262 . A . . END=19995262 GT:DP:GQ:MIN_DP:PL 0/0:34:53:34:0,53,1043 +chr20 19995263 . A . . END=19995263 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,1068 +chr20 19995264 . A . . END=19995265 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +chr20 19995266 . A . . END=19995276 GT:DP:GQ:MIN_DP:PL 0/0:37:90:33:0,90,1350 +chr20 19995277 . A . . END=19995277 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1152 +chr20 19995278 . A . . END=19995278 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +chr20 19995279 . C . . END=19995279 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1048 +chr20 19995280 . A . . END=19995280 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 19995281 . A . . END=19995281 GT:DP:GQ:MIN_DP:PL 0/0:37:72:37:0,72,1158 +chr20 19995282 . A . . END=19995283 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +chr20 19995284 . C . . END=19995284 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1052 +chr20 19995285 . A . . END=19995285 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1152 +chr20 19995286 . C . . END=19995286 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,997 +chr20 19995287 . A . . END=19995287 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1168 +chr20 19995288 . T . . END=19995288 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1107 +chr20 19995289 . T . . END=19995289 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +chr20 19995290 . C . . END=19995290 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,965 +chr20 19995291 . A . . END=19995300 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +chr20 19995301 . G . . END=19995301 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +chr20 19995302 . G . . END=19995302 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1092 +chr20 19995303 . A . . END=19995306 GT:DP:GQ:MIN_DP:PL 0/0:34:84:32:0,84,1260 +chr20 19995307 . T . . END=19995308 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +chr20 19995309 . G . . END=19995309 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1093 +chr20 19995310 . G . . END=19995311 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 19995312 . A . . END=19995314 GT:DP:GQ:MIN_DP:PL 0/0:31:84:28:0,84,973 +chr20 19995315 . C . . END=19995315 GT:DP:GQ:MIN_DP:PL 0/0:29:58:29:0,58,890 +chr20 19995316 . A . . END=19995332 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1007 +chr20 19995333 . A . . END=19995333 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 19995334 . A . . END=19995345 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1082 +chr20 19995346 . C . . END=19995346 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1102 +chr20 19995347 . T . . END=19995348 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 19995349 . T . . END=19995355 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1172 +chr20 19995356 . G . . END=19995356 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1092 +chr20 19995357 . T . . END=19995387 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1147 +chr20 19995388 . G . . END=19995388 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1201 +chr20 19995389 . A . . END=19995401 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1266 +chr20 19995402 . C . . END=19995402 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1242 +chr20 19995403 . T . . END=19995412 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1530 +chr20 19995413 . A . . END=19995413 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1291 +chr20 19995414 . T . . END=19995424 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1211 +chr20 19995425 . C . . END=19995426 GT:DP:GQ:MIN_DP:PL 0/0:38:83:36:0,83,1132 +chr20 19995427 . A . . END=19995479 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,102,1126 +chr20 19995480 . A . . END=19995480 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chr20 19995481 . G . . END=19995483 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chr20 19995484 . A . . END=19995487 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +chr20 19995488 . T . . END=19995489 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +chr20 19995490 . A . . END=19995502 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +chr20 19995503 . G . . END=19995505 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19995506 . C . . END=19995506 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1092 +chr20 19995507 . C . . END=19995515 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1117 +chr20 19995516 . T . . END=19995516 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1192 +chr20 19995517 . G . . END=19995518 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1221 +chr20 19995519 . T . . END=19995519 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1172 +chr20 19995520 . A . . END=19995524 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1232 +chr20 19995525 . A . . END=19995544 GT:DP:GQ:MIN_DP:PL 0/0:35:90:31:0,90,1037 +chr20 19995545 . T . . END=19995550 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 +chr20 19995551 . T . . END=19995560 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +chr20 19995561 . T . . END=19995568 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +chr20 19995569 . C . . END=19995569 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,1023 +chr20 19995570 . C . . END=19995572 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 19995573 . T . . END=19995575 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +chr20 19995576 . A . . END=19995576 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +chr20 19995577 . C . . END=19995577 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 19995578 . A . . END=19995590 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1078 +chr20 19995591 . A . . END=19995591 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chr20 19995592 . T . . END=19995592 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1113 +chr20 19995593 . A . . END=19995593 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chr20 19995594 . A . . END=19995609 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +chr20 19995610 . T . . END=19995610 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19995611 . A . . END=19995616 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +chr20 19995617 . T . . END=19995623 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 19995624 . A . . END=19995624 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1072 +chr20 19995625 . A . . END=19995631 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chr20 19995632 . T . . END=19995641 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1132 +chr20 19995642 . A . . END=19995651 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +chr20 19995652 . C . . END=19995662 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1246 +chr20 19995663 . G . . END=19995663 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1176 +chr20 19995664 . A . . END=19995789 GT:DP:GQ:MIN_DP:PL 0/0:43:99:34:0,102,1131 +chr20 19995790 . A . . END=19995790 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1425 +chr20 19995791 . A . . END=19995826 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,105,1351 +chr20 19995827 . A . . END=19995827 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1336 +chr20 19995828 . A . . END=19995831 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 +chr20 19995832 . A . . END=19995832 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1201 +chr20 19995833 . A . . END=19995837 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +chr20 19995838 . T . . END=19995842 GT:DP:GQ:MIN_DP:PL 0/0:36:91:34:0,91,1148 +chr20 19995843 . A . . END=19995843 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1162 +chr20 19995844 . T . . END=19995848 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +chr20 19995849 . G . . END=19995851 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1058 +chr20 19995852 . A . . END=19995852 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +chr20 19995853 . G . . END=19995853 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1072 +chr20 19995854 . A . . END=19995863 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +chr20 19995864 . T . . END=19995869 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chr20 19995870 . A . . END=19995889 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +chr20 19995890 . G . . END=19995891 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 19995892 . G . . END=19995893 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 19995894 . T . . END=19995927 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1101 +chr20 19995928 . C . . END=19995936 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 +chr20 19995937 . A . . END=19995937 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1088 +chr20 19995938 . C . . END=19995939 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 19995940 . T . . END=19995999 GT:DP:GQ:MIN_DP:PL 0/0:41:99:34:0,99,1207 +chr20 19996000 . C . . END=19996000 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1395 +chr20 19996001 . A . . END=19996043 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,105,1575 +chr20 19996044 . G . . END=19996044 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1315 +chr20 19996045 . G . . END=19996105 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,101,1221 +chr20 19996106 . A G, 484.77 . BaseQRankSum=0.086;ClippingRankSum=-0.604;DP=35;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.225;RAW_MQ=125316.00;ReadPosRankSum=-1.190 GT:AD:DP:GQ:PL:SB 0/1:16,18,0:34:99:513,0,454,562,508,1070:10,6,8,10 +chr20 19996107 . G . . END=19996108 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +chr20 19996109 . T . . END=19996109 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1127 +chr20 19996110 . T . . END=19996110 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +chr20 19996111 . C . . END=19996121 GT:DP:GQ:MIN_DP:PL 0/0:37:90:34:0,90,1350 +chr20 19996122 . T . . END=19996123 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +chr20 19996124 . G . . END=19996130 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chr20 19996131 . T . . END=19996131 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1033 +chr20 19996132 . G . . END=19996136 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1058 +chr20 19996137 . A . . END=19996137 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,988 +chr20 19996138 . A . . END=19996160 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,988 +chr20 19996161 . A . . END=19996172 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1072 +chr20 19996173 . G . . END=19996226 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1286 +chr20 19996227 . T . . END=19996227 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1365 +chr20 19996228 . C . . END=19996368 GT:DP:GQ:MIN_DP:PL 0/0:51:99:42:0,99,1485 +chr20 19996369 . C . . END=19996377 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,93,1395 +chr20 19996378 . G . . END=19996378 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1032 +chr20 19996379 . C . . END=19996382 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1097 +chr20 19996383 . A . . END=19996387 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 19996388 . G . . END=19996390 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +chr20 19996391 . A . . END=19996394 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +chr20 19996395 . C . . END=19996397 GT:DP:GQ:MIN_DP:PL 0/0:35:87:34:0,87,1305 +chr20 19996398 . T . . END=19996401 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +chr20 19996402 . T . . END=19996405 GT:DP:GQ:MIN_DP:PL 0/0:32:82:30:0,82,1013 +chr20 19996406 . A . . END=19996408 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +chr20 19996409 . C . . END=19996409 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1023 +chr20 19996410 . A . . END=19996412 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +chr20 19996413 . A . . END=19996414 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +chr20 19996415 . C . . END=19996417 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 19996418 . T . . END=19996418 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 19996419 . G . . END=19996423 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 19996424 . C . . END=19996424 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 19996425 . C . . END=19996433 GT:DP:GQ:MIN_DP:PL 0/0:31:81:28:0,81,1215 +chr20 19996434 . C . . END=19996442 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1072 +chr20 19996443 . C . . END=19996444 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19996445 . T . . END=19996445 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1083 +chr20 19996446 . G . . END=19996446 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19996447 . G . . END=19996452 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 19996453 . C . . END=19996454 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +chr20 19996455 . C . . END=19996461 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,982 +chr20 19996462 . G . . END=19996467 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1077 +chr20 19996468 . C . . END=19996470 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 19996471 . C . . END=19996495 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1197 +chr20 19996496 . T . . END=19996496 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1128 +chr20 19996497 . G . . END=19996551 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1142 +chr20 19996552 . C . . END=19996552 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1227 +chr20 19996553 . C . . END=19996554 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +chr20 19996555 . C . . END=19996563 GT:DP:GQ:MIN_DP:PL 0/0:39:96:36:0,96,1440 +chr20 19996564 . G . . END=19996565 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +chr20 19996566 . A . . END=19996568 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +chr20 19996569 . T . . END=19996574 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +chr20 19996575 . A . . END=19996577 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 +chr20 19996578 . T . . END=19996594 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +chr20 19996595 . A . . END=19996595 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 19996596 . T . . END=19996596 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1147 +chr20 19996597 . G . . END=19996612 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1181 +chr20 19996613 . A . . END=19996613 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1203 +chr20 19996614 . T . . END=19996625 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1271 +chr20 19996626 . A . . END=19996626 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1242 +chr20 19996627 . C . . END=19996658 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,1187 +chr20 19996659 . A . . END=19996659 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1197 +chr20 19996660 . C . . END=19996671 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +chr20 19996672 . T . . END=19996672 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1182 +chr20 19996673 . T . . END=19996680 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +chr20 19996681 . G . . END=19996683 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +chr20 19996684 . T . . END=19996684 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 19996685 . A . . END=19996685 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1162 +chr20 19996686 . T . . END=19996687 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 19996688 . A . . END=19996692 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +chr20 19996693 . A . . END=19996693 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,1108 +chr20 19996694 . C . . END=19996694 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 19996695 . A . . END=19996709 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +chr20 19996710 . A . . END=19996714 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +chr20 19996715 . C . . END=19996725 GT:DP:GQ:MIN_DP:PL 0/0:32:72:31:0,72,1080 +chr20 19996726 . A . . END=19996728 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +chr20 19996729 . T . . END=19996730 GT:DP:GQ:MIN_DP:PL 0/0:31:65:30:0,65,963 +chr20 19996731 . C . . END=19996737 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chr20 19996738 . G . . END=19996738 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1033 +chr20 19996739 . A . . END=19996743 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +chr20 19996744 . G . . END=19996756 GT:DP:GQ:MIN_DP:PL 0/0:30:72:26:0,72,1080 +chr20 19996757 . T . . END=19996767 GT:DP:GQ:MIN_DP:PL 0/0:27:66:24:0,66,990 +chr20 19996768 . A . . END=19996768 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,765 +chr20 19996769 . C . . END=19996775 GT:DP:GQ:MIN_DP:PL 0/0:23:66:23:0,66,990 +chr20 19996776 . C . . END=19996785 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,814 +chr20 19996786 . C . . END=19996799 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,780 +chr20 19996800 . G . . END=19996824 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,834 +chr20 19996825 . T . . END=19996825 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,849 +chr20 19996826 . C . . END=19996833 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 19996834 . G . . END=19996841 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,800 +chr20 19996842 . G . . END=19996859 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,859 +chr20 19996860 . C . . END=19996867 GT:DP:GQ:MIN_DP:PL 0/0:27:60:26:0,60,900 +chr20 19996868 . T . . END=19996868 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 +chr20 19996869 . C . . END=19996905 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,680 +chr20 19996906 . C . . END=19996906 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,675 +chr20 19996907 . A . . END=19996933 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,690 +chr20 19996934 . G . . END=19996934 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,716 +chr20 19996935 . T . . END=19996946 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,759 +chr20 19996947 . G . . END=19996952 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19996953 . A . . END=19996963 GT:DP:GQ:MIN_DP:PL 0/0:25:66:24:0,66,990 +chr20 19996964 . C . . END=19996965 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 19996966 . A . . END=19996966 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,790 +chr20 19996967 . A . . END=19996969 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,774 +chr20 19996970 . A . . END=19996970 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,780 +chr20 19996971 . C . . END=19996979 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,808 +chr20 19996980 . C . . END=19996988 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,66,990 +chr20 19996989 . C . . END=19996991 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 19996992 . A . . END=19996996 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +chr20 19996997 . T . . END=19997009 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 19997010 . T . . END=19997012 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,824 +chr20 19997013 . A . . END=19997014 GT:DP:GQ:MIN_DP:PL 0/0:28:75:26:0,75,1125 +chr20 19997015 . A . . END=19997015 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,870 +chr20 19997016 . C . . END=19997018 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,904 +chr20 19997019 . A . . END=19997019 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19997020 . T . . END=19997029 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +chr20 19997030 . G . . END=19997040 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,929 +chr20 19997041 . T . . END=19997042 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1013 +chr20 19997043 . C . . END=19997052 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,988 +chr20 19997053 . G . . END=19997053 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,973 +chr20 19997054 . A . . END=19997055 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 19997056 . A . . END=19997072 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,873 +chr20 19997073 . G . . END=19997073 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,835 +chr20 19997074 . C . . END=19997086 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,824 +chr20 19997087 . C . . END=19997123 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,700 +chr20 19997124 . C . . END=19997127 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chr20 19997128 . T . . END=19997128 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19997129 . G . . END=19997134 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chr20 19997135 . G . . END=19997138 GT:DP:GQ:MIN_DP:PL 0/0:21:57:20:0,57,855 +chr20 19997139 . T . . END=19997144 GT:DP:GQ:MIN_DP:PL 0/0:20:54:19:0,54,810 +chr20 19997145 . A . . END=19997145 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chr20 19997146 . T . . END=19997146 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chr20 19997147 . T . . END=19997152 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 19997153 . T . . END=19997153 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 19997154 . C . . END=19997158 GT:DP:GQ:MIN_DP:PL 0/0:20:51:19:0,51,765 +chr20 19997159 . G . . END=19997160 GT:DP:GQ:MIN_DP:PL 0/0:19:45:19:0,45,675 +chr20 19997161 . A . . END=19997162 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 +chr20 19997163 . A . . END=19997166 GT:DP:GQ:MIN_DP:PL 0/0:19:48:18:0,48,720 +chr20 19997167 . C . . END=19997167 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chr20 19997168 . C . . END=19997169 GT:DP:GQ:MIN_DP:PL 0/0:20:42:19:0,42,630 +chr20 19997170 . C . . END=19997171 GT:DP:GQ:MIN_DP:PL 0/0:19:45:17:0,45,675 +chr20 19997172 . G . . END=19997172 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,601 +chr20 19997173 . T . . END=19997176 GT:DP:GQ:MIN_DP:PL 0/0:19:45:18:0,45,675 +chr20 19997177 . A . . END=19997177 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 +chr20 19997178 . C . . END=19997180 GT:DP:GQ:MIN_DP:PL 0/0:18:45:17:0,45,675 +chr20 19997181 . G . . END=19997183 GT:DP:GQ:MIN_DP:PL 0/0:17:42:16:0,42,630 +chr20 19997184 . G . . END=19997189 GT:DP:GQ:MIN_DP:PL 0/0:17:45:16:0,45,675 +chr20 19997190 . G . . END=19997191 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chr20 19997192 . C . . END=19997192 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,522 +chr20 19997193 . C . . END=19997194 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,506 +chr20 19997195 . A . . END=19997195 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,536 +chr20 19997196 . G . . END=19997196 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,516 +chr20 19997197 . T . . END=19997203 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,526 +chr20 19997204 . T . . END=19997204 GT:DP:GQ:MIN_DP:PL 0/0:16:34:16:0,34,497 +chr20 19997205 . T . . END=19997214 GT:DP:GQ:MIN_DP:PL 0/0:16:45:15:0,45,501 +chr20 19997215 . G . . END=19997215 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,516 +chr20 19997216 . A . . END=19997216 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,487 +chr20 19997217 . G . . END=19997217 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,436 +chr20 19997218 . A . . END=19997219 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,536 +chr20 19997220 . G . . END=19997220 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,487 +chr20 19997221 . A . . END=19997222 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,536 +chr20 19997223 . C . . END=19997224 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,561 +chr20 19997225 . G . . END=19997227 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,566 +chr20 19997228 . A . . END=19997228 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,640 +chr20 19997229 . T . . END=19997229 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,655 +chr20 19997230 . G . . END=19997230 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,645 +chr20 19997231 . T . . END=19997238 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,655 +chr20 19997239 . C . . END=19997242 GT:DP:GQ:MIN_DP:PL 0/0:21:57:20:0,57,855 +chr20 19997243 . T . . END=19997243 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,606 +chr20 19997244 . T . . END=19997244 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chr20 19997245 . C . . END=19997245 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,636 +chr20 19997246 . T . . END=19997246 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 19997247 . C . . END=19997250 GT:DP:GQ:MIN_DP:PL 0/0:22:57:20:0,57,855 +chr20 19997251 . C . . END=19997252 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 +chr20 19997253 . C . . END=19997253 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,730 +chr20 19997254 . A . . END=19997274 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,685 +chr20 19997275 . C . . END=19997277 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19997278 . A . . END=19997278 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,716 +chr20 19997279 . A . . END=19997280 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,900 +chr20 19997281 . C . . END=19997282 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19997283 . C . . END=19997286 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 +chr20 19997287 . A . . END=19997296 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19997297 . A . . END=19997301 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,685 +chr20 19997302 . T . . END=19997302 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,646 +chr20 19997303 . A . . END=19997303 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,695 +chr20 19997304 . T . . END=19997304 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 19997305 . G . . END=19997308 GT:DP:GQ:MIN_DP:PL 0/0:21:57:20:0,57,855 +chr20 19997309 . G . . END=19997309 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chr20 19997310 . C . . END=19997312 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 19997313 . T . . END=19997370 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,720 +chr20 19997371 . C . . END=19997373 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 +chr20 19997374 . G . . END=19997375 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,810 +chr20 19997376 . C . . END=19997378 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,855 +chr20 19997379 . T . . END=19997384 GT:DP:GQ:MIN_DP:PL 0/0:22:60:21:0,60,900 +chr20 19997385 . A . . END=19997385 GT:DP:GQ:MIN_DP:PL 0/0:21:49:21:0,49,651 +chr20 19997386 . C . . END=19997404 GT:DP:GQ:MIN_DP:PL 0/0:24:60:21:0,60,780 +chr20 19997405 . A . . END=19997405 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,730 +chr20 19997406 . A . . END=19997413 GT:DP:GQ:MIN_DP:PL 0/0:23:66:22:0,66,734 +chr20 19997414 . C . . END=19997418 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19997419 . A . . END=19997420 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 19997421 . T . . END=19997423 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19997424 . G . . END=19997425 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 19997426 . T . . END=19997434 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,884 +chr20 19997435 . A . . END=19997456 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,908 +chr20 19997457 . C . . END=19997460 GT:DP:GQ:MIN_DP:PL 0/0:29:78:28:0,78,1170 +chr20 19997461 . A . . END=19997461 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,904 +chr20 19997462 . G . . END=19997463 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 19997464 . A . . END=19997464 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,949 +chr20 19997465 . A . . END=19997467 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19997468 . T . . END=19997478 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +chr20 19997479 . C . . END=19997482 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,978 +chr20 19997483 . G . . END=19997483 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,949 +chr20 19997484 . C . . END=19997499 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,909 +chr20 19997500 . T . . END=19997500 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,924 +chr20 19997501 . G . . END=19997504 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19997505 . T . . END=19997505 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chr20 19997506 . C . . END=19997516 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,939 +chr20 19997517 . G . . END=19997521 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chr20 19997522 . G . . END=19997522 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,939 +chr20 19997523 . C . . END=19997531 GT:DP:GQ:MIN_DP:PL 0/0:28:75:26:0,75,1125 +chr20 19997532 . G . . END=19997575 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,745 +chr20 19997576 . C . . END=19997576 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 19997577 . G . . END=19997577 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,900 +chr20 19997578 . G . . END=19997578 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,765 +chr20 19997579 . T . . END=19997584 GT:DP:GQ:MIN_DP:PL 0/0:24:54:23:0,54,810 +chr20 19997585 . C . . END=19997590 GT:DP:GQ:MIN_DP:PL 0/0:22:57:19:0,57,661 +chr20 19997591 . T . . END=19997601 GT:DP:GQ:MIN_DP:PL 0/0:22:60:20:0,60,675 +chr20 19997602 . T . . END=19997602 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,730 +chr20 19997603 . A . . END=19997615 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,770 +chr20 19997616 . G . . END=19997618 GT:DP:GQ:MIN_DP:PL 0/0:25:75:25:0,75,849 +chr20 19997619 . T . . END=19997629 GT:DP:GQ:MIN_DP:PL 0/0:26:63:24:0,63,945 +chr20 19997630 . G . . END=19997630 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,706 +chr20 19997631 . C . . END=19997637 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,744 +chr20 19997638 . A . . END=19997640 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,804 +chr20 19997641 . C . . END=19997641 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,800 +chr20 19997642 . C . . END=19997642 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,804 +chr20 19997643 . C . . END=19997643 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,720 +chr20 19997644 . A . . END=19997648 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,814 +chr20 19997649 . C . . END=19997652 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 19997653 . G . . END=19997656 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 19997657 . G . . END=19997657 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,755 +chr20 19997658 . C . . END=19997713 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,783 +chr20 19997714 . A . . END=19997716 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +chr20 19997717 . C . . END=19997745 GT:DP:GQ:MIN_DP:PL 0/0:28:72:25:0,72,869 +chr20 19997746 . G . . END=19997750 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19997751 . T . . END=19997751 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,943 +chr20 19997752 . T . . END=19997754 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 19997755 . T . . END=19997756 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 19997757 . T . . END=19997761 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +chr20 19997762 . A . . END=19997762 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,1078 +chr20 19997763 . A . . END=19997775 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1037 +chr20 19997776 . A . . END=19997776 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1003 +chr20 19997777 . T . . END=19997777 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +chr20 19997778 . C . . END=19997797 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,998 +chr20 19997798 . G . . END=19997798 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,974 +chr20 19997799 . A . . END=19997806 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,998 +chr20 19997807 . A . . END=19997807 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,984 +chr20 19997808 . T . . END=19997835 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,953 +chr20 19997836 . A . . END=19997837 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,984 +chr20 19997838 . A . . END=19997840 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19997841 . T . . END=19997846 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +chr20 19997847 . A . . END=19997847 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,880 +chr20 19997848 . A . . END=19997850 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 19997851 . A . . END=19997851 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,859 +chr20 19997852 . T . . END=19997852 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chr20 19997853 . A . . END=19997874 GT:DP:GQ:MIN_DP:PL 0/0:25:61:23:0,61,780 +chr20 19997875 . T . . END=19997875 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,775 +chr20 19997876 . G . . END=19997884 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,900 +chr20 19997885 . T . . END=19997885 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,855 +chr20 19997886 . T . . END=19997888 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 +chr20 19997889 . T . . END=19997890 GT:DP:GQ:MIN_DP:PL 0/0:24:57:23:0,57,855 +chr20 19997891 . T . . END=19997895 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,900 +chr20 19997896 . T . . END=19997896 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 19997897 . G . . END=19997897 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,720 +chr20 19997898 . T . . END=19997898 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,720 +chr20 19997899 . T . . END=19997899 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,751 +chr20 19997900 . T . . END=19997900 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +chr20 19997901 . C . . END=19997902 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 19997903 . A . . END=19997907 GT:DP:GQ:MIN_DP:PL 0/0:22:54:21:0,54,810 +chr20 19997908 . C . . END=19997909 GT:DP:GQ:MIN_DP:PL 0/0:21:51:21:0,51,765 +chr20 19997910 . C . . END=19997918 GT:DP:GQ:MIN_DP:PL 0/0:20:54:18:0,54,626 +chr20 19997919 . G . . END=19997919 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,585 +chr20 19997920 . T . . END=19997920 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,586 +chr20 19997921 . T . . END=19997921 GT:DP:GQ:MIN_DP:PL 0/0:18:40:18:0,40,567 +chr20 19997922 . T . . END=19997926 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,605 +chr20 19997927 . G . . END=19997927 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,571 +chr20 19997928 . C . . END=19997931 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,606 +chr20 19997932 . G . . END=19997934 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chr20 19997935 . G . . END=19997938 GT:DP:GQ:MIN_DP:PL 0/0:18:48:17:0,48,720 +chr20 19997939 . A . . END=19997945 GT:DP:GQ:MIN_DP:PL 0/0:18:51:17:0,51,571 +chr20 19997946 . G . . END=19997950 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,526 +chr20 19997951 . A . . END=19997951 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,536 +chr20 19997952 . T . . END=19997953 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chr20 19997954 . T . . END=19997957 GT:DP:GQ:MIN_DP:PL 0/0:18:51:17:0,51,581 +chr20 19997958 . T . . END=19997959 GT:DP:GQ:MIN_DP:PL 0/0:18:40:18:0,40,577 +chr20 19997960 . C . . END=19997962 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,626 +chr20 19997963 . A . . END=19997963 GT:DP:GQ:MIN_DP:PL 0/0:19:43:19:0,43,601 +chr20 19997964 . T . . END=19997966 GT:DP:GQ:MIN_DP:PL 0/0:20:57:19:0,57,640 +chr20 19997967 . A . . END=19997967 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,645 +chr20 19997968 . G . . END=19997968 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,600 +chr20 19997969 . A . . END=19997972 GT:DP:GQ:MIN_DP:PL 0/0:22:63:21:0,63,680 +chr20 19997973 . A . . END=19997973 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,645 +chr20 19997974 . C . . END=19997975 GT:DP:GQ:MIN_DP:PL 0/0:23:63:22:0,63,725 +chr20 19997976 . T . . END=19997976 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,710 +chr20 19997977 . G . . END=19997977 GT:DP:GQ:MIN_DP:PL 0/0:21:49:21:0,49,651 +chr20 19997978 . C . . END=19997978 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,694 +chr20 19997979 . T . . END=19997979 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,735 +chr20 19997980 . T . . END=19997985 GT:DP:GQ:MIN_DP:PL 0/0:24:63:23:0,63,945 +chr20 19997986 . T . . END=19997986 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,855 +chr20 19997987 . T . . END=19997989 GT:DP:GQ:MIN_DP:PL 0/0:23:54:22:0,54,810 +chr20 19997990 . T . . END=19997990 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,765 +chr20 19997991 . C . . END=19997991 GT:DP:GQ:MIN_DP:PL 0/0:23:20:23:0,20,630 +chr20 19997992 . T . . END=19997993 GT:DP:GQ:MIN_DP:PL 0/0:23:54:22:0,54,810 +chr20 19997994 . A . . END=19997994 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,581 +chr20 19997995 . A . . END=19997995 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 +chr20 19997996 . G . . END=19997996 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19997997 . A . . END=19997998 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 19997999 . A . . END=19997999 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,601 +chr20 19998000 . G . . END=19998000 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,571 +chr20 19998001 . A . . END=19998001 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +chr20 19998002 . G . . END=19998002 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chr20 19998003 . T . . END=19998009 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,576 +chr20 19998010 . C . . END=19998010 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,541 +chr20 19998011 . T . . END=19998014 GT:DP:GQ:MIN_DP:PL 0/0:19:48:18:0,48,720 +chr20 19998015 . A . . END=19998015 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,765 +chr20 19998016 . C . . END=19998021 GT:DP:GQ:MIN_DP:PL 0/0:20:54:18:0,54,626 +chr20 19998022 . C . . END=19998023 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,640 +chr20 19998024 . G . . END=19998024 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,606 +chr20 19998025 . G . . END=19998026 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,640 +chr20 19998027 . G . . END=19998027 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,630 +chr20 19998028 . T . . END=19998028 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,665 +chr20 19998029 . G . . END=19998029 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,605 +chr20 19998030 . C . . END=19998030 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,655 +chr20 19998031 . A . . END=19998031 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,685 +chr20 19998032 . G . . END=19998032 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 19998033 . T . . END=19998033 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,671 +chr20 19998034 . G . . END=19998043 GT:DP:GQ:MIN_DP:PL 0/0:23:63:21:0,63,650 +chr20 19998044 . T . . END=19998044 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,730 +chr20 19998045 . C . . END=19998057 GT:DP:GQ:MIN_DP:PL 0/0:23:63:22:0,63,749 +chr20 19998058 . A . . END=19998058 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,720 +chr20 19998059 . A . . END=19998073 GT:DP:GQ:MIN_DP:PL 0/0:22:63:21:0,63,669 +chr20 19998074 . G . . END=19998074 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,714 +chr20 19998075 . T . . END=19998093 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,705 +chr20 19998094 . T . . END=19998095 GT:DP:GQ:MIN_DP:PL 0/0:22:57:21:0,57,855 +chr20 19998096 . A . . END=19998129 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,745 +chr20 19998130 . C . . END=19998131 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 19998132 . C . . END=19998136 GT:DP:GQ:MIN_DP:PL 0/0:26:69:24:0,69,1035 +chr20 19998137 . C . . END=19998137 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,724 +chr20 19998138 . C . . END=19998141 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,769 +chr20 19998142 . C . . END=19998142 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19998143 . T . . END=19998145 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,749 +chr20 19998146 . T . . END=19998146 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,755 +chr20 19998147 . T . . END=19998148 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +chr20 19998149 . A . . END=19998149 GT:DP:GQ:MIN_DP:PL 0/0:25:36:25:0,36,710 +chr20 19998150 . T . . END=19998155 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,990 +chr20 19998156 . A . . END=19998156 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,814 +chr20 19998157 . T . . END=19998160 GT:DP:GQ:MIN_DP:PL 0/0:27:63:26:0,63,945 +chr20 19998161 . T . . END=19998161 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,839 +chr20 19998162 . A . . END=19998163 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 19998164 . T . . END=19998164 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,759 +chr20 19998165 . A . . END=19998167 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,764 +chr20 19998168 . G . . END=19998172 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,718 +chr20 19998173 . G . . END=19998173 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 19998174 . A . . END=19998174 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,814 +chr20 19998175 . T . . END=19998189 GT:DP:GQ:MIN_DP:PL 0/0:24:63:21:0,63,680 +chr20 19998190 . C . . END=19998190 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19998191 . A . . END=19998191 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,790 +chr20 19998192 . G . . END=19998192 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19998193 . G . . END=19998193 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,739 +chr20 19998194 . C . . END=19998194 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 19998195 . T . . END=19998195 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,709 +chr20 19998196 . G . . END=19998208 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,768 +chr20 19998209 . T . . END=19998209 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,814 +chr20 19998210 . G . . END=19998215 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,804 +chr20 19998216 . A . . END=19998216 GT:DP:GQ:MIN_DP:PL 0/0:24:23:24:0,23,685 +chr20 19998217 . A . . END=19998218 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,799 +chr20 19998219 . T . . END=19998219 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,794 +chr20 19998220 . G . . END=19998221 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,844 +chr20 19998222 . T . . END=19998222 GT:DP:GQ:MIN_DP:PL 0/0:25:46:25:0,46,731 +chr20 19998223 . C . . END=19998223 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,803 +chr20 19998224 . C . . END=19998225 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,848 +chr20 19998226 . C . . END=19998226 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,833 +chr20 19998227 . C . . END=19998229 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,828 +chr20 19998230 . C . . END=19998230 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,833 +chr20 19998231 . C . . END=19998233 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19998234 . A . . END=19998235 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +chr20 19998236 . C . . END=19998236 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19998237 . T . . END=19998247 GT:DP:GQ:MIN_DP:PL 0/0:30:75:27:0,75,1125 +chr20 19998248 . C . . END=19998248 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,899 +chr20 19998249 . T . . END=19998253 GT:DP:GQ:MIN_DP:PL 0/0:28:78:26:0,78,864 +chr20 19998254 . T . . END=19998254 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,825 +chr20 19998255 . T . . END=19998256 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,843 +chr20 19998257 . C . . END=19998257 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,814 +chr20 19998258 . A . . END=19998258 GT:DP:GQ:MIN_DP:PL 0/0:25:75:25:0,75,809 +chr20 19998259 . G . . END=19998259 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,899 +chr20 19998260 . G . . END=19998274 GT:DP:GQ:MIN_DP:PL 0/0:27:72:24:0,72,774 +chr20 19998275 . C . . END=19998281 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,878 +chr20 19998282 . A . . END=19998282 GT:DP:GQ:MIN_DP:PL 0/0:30:51:30:0,51,874 +chr20 19998283 . T . . END=19998285 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19998286 . T . . END=19998288 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,1080 +chr20 19998289 . T . . END=19998295 GT:DP:GQ:MIN_DP:PL 0/0:28:66:27:0,66,990 +chr20 19998296 . T . . END=19998296 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 19998297 . A . . END=19998297 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,884 +chr20 19998298 . A . . END=19998300 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chr20 19998301 . G . . END=19998301 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,835 +chr20 19998302 . C . . END=19998307 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 19998308 . A . . END=19998312 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +chr20 19998313 . G . . END=19998316 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1002 +chr20 19998317 . G . . END=19998317 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,958 +chr20 19998318 . T . . END=19998325 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,997 +chr20 19998326 . G . . END=19998326 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1002 +chr20 19998327 . G . . END=19998327 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1013 +chr20 19998328 . T . . END=19998328 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1123 +chr20 19998329 . G . . END=19998329 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 19998330 . G . . END=19998331 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 19998332 . T . . END=19998332 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 19998333 . C . . END=19998333 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1097 +chr20 19998334 . A . . END=19998336 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19998337 . C . . END=19998339 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +chr20 19998340 . G . . END=19998340 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1137 +chr20 19998341 . T . . END=19998345 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +chr20 19998346 . C . . END=19998348 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 19998349 . G . . END=19998349 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1117 +chr20 19998350 . C . . END=19998388 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,100,1116 +chr20 19998389 . G . . END=19998389 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1126 +chr20 19998390 . A . . END=19998398 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1101 +chr20 19998399 . C . . END=19998399 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1071 +chr20 19998400 . C . . END=19998401 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1126 +chr20 19998402 . G . . END=19998402 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1101 +chr20 19998403 . C . . END=19998404 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1081 +chr20 19998405 . T . . END=19998405 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1112 +chr20 19998406 . T . . END=19998420 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,105,1106 +chr20 19998421 . A . . END=19998421 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1296 +chr20 19998422 . C . . END=19998472 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1245 +chr20 19998473 . T . . END=19998473 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 19998474 . A . . END=19998477 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 19998478 . G . . END=19998479 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +chr20 19998480 . G . . END=19998480 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 19998481 . C . . END=19998488 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 19998489 . T . . END=19998503 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +chr20 19998504 . A . . END=19998505 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chr20 19998506 . G . . END=19998507 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +chr20 19998508 . G . . END=19998508 GT:DP:GQ:MIN_DP:PL 0/0:31:59:31:0,59,1008 +chr20 19998509 . G . . END=19998512 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +chr20 19998513 . A . . END=19998513 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,1008 +chr20 19998514 . A . . END=19998549 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,998 +chr20 19998550 . A . . END=19998557 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 19998558 . C . . END=19998567 GT:DP:GQ:MIN_DP:PL 0/0:33:84:31:0,84,1260 +chr20 19998568 . A . . END=19998568 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19998569 . C . . END=19998572 GT:DP:GQ:MIN_DP:PL 0/0:31:87:29:0,87,978 +chr20 19998573 . T . . END=19998574 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1013 +chr20 19998575 . C . . END=19998591 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +chr20 19998592 . C . . END=19998595 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 19998596 . A . . END=19998596 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1013 +chr20 19998597 . T . . END=19998599 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 19998600 . G . . END=19998605 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19998606 . G . . END=19998606 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,953 +chr20 19998607 . T . . END=19998612 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1018 +chr20 19998613 . A . . END=19998613 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1023 +chr20 19998614 . A . . END=19998628 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1027 +chr20 19998629 . A . . END=19998634 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 19998635 . G . . END=19998635 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,968 +chr20 19998636 . C . . END=19998638 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,982 +chr20 19998639 . A . . END=19998640 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +chr20 19998641 . C . . END=19998641 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,963 +chr20 19998642 . T . . END=19998643 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +chr20 19998644 . T . . END=19998644 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 19998645 . G . . END=19998651 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +chr20 19998652 . A . . END=19998659 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1158 +chr20 19998660 . C . . END=19998696 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1127 +chr20 19998697 . C . . END=19998697 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1252 +chr20 19998698 . C . . END=19998741 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,100,1211 +chr20 19998742 . A . . END=19998742 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1201 +chr20 19998743 . C . . END=19998766 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,103,1216 +chr20 19998767 . A . . END=19998767 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1211 +chr20 19998768 . A . . END=19998805 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1276 +chr20 19998806 . T . . END=19998814 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +chr20 19998815 . A . . END=19998815 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1113 +chr20 19998816 . T . . END=19998820 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 19998821 . A . . END=19998822 GT:DP:GQ:MIN_DP:PL 0/0:34:85:33:0,85,1068 +chr20 19998823 . C . . END=19998831 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,993 +chr20 19998832 . G . . END=19998833 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,933 +chr20 19998834 . C . . END=19998838 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 19998839 . T . . END=19998839 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19998840 . A . . END=19998847 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +chr20 19998848 . A . . END=19998849 GT:DP:GQ:MIN_DP:PL 0/0:33:82:32:0,82,993 +chr20 19998850 . A . . END=19998850 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 19998851 . G . . END=19998851 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1043 +chr20 19998852 . A . . END=19998854 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +chr20 19998855 . A . . END=19998856 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +chr20 19998857 . G . . END=19998867 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +chr20 19998868 . T . . END=19998882 GT:DP:GQ:MIN_DP:PL 0/0:32:81:28:0,81,1215 +chr20 19998883 . C . . END=19998895 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +chr20 19998896 . C . . END=19998899 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,990 +chr20 19998900 . C . . END=19998911 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,829 +chr20 19998912 . T . . END=19998912 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,810 +chr20 19998913 . T . . END=19998919 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +chr20 19998920 . G . . END=19998920 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19998921 . A . . END=19998921 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chr20 19998922 . G . . END=19998922 GT:DP:GQ:MIN_DP:PL 0/0:28:55:28:0,55,814 +chr20 19998923 . A . . END=19998926 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +chr20 19998927 . T . . END=19998927 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,884 +chr20 19998928 . C . . END=19998930 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 19998931 . A . . END=19998931 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,914 +chr20 19998932 . C . . END=19998932 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 19998933 . A . . END=19998933 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,845 +chr20 19998934 . C . . END=19998938 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,804 +chr20 19998939 . G . . END=19998963 GT:DP:GQ:MIN_DP:PL 0/0:23:60:20:0,60,655 +chr20 19998964 . C . . END=19998964 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,720 +chr20 19998965 . C . . END=19998987 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,745 +chr20 19998988 . C . . END=19998990 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 19998991 . C . . END=19998991 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,824 +chr20 19998992 . T . . END=19998995 GT:DP:GQ:MIN_DP:PL 0/0:26:69:25:0,69,1035 +chr20 19998996 . A . . END=19998996 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,784 +chr20 19998997 . G . . END=19999024 GT:DP:GQ:MIN_DP:PL 0/0:24:63:22:0,63,724 +chr20 19999025 . A . . END=19999025 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,685 +chr20 19999026 . G . . END=19999026 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +chr20 19999027 . A . . END=19999027 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,695 +chr20 19999028 . A . . END=19999045 GT:DP:GQ:MIN_DP:PL 0/0:22:63:21:0,63,700 +chr20 19999046 . G . . END=19999049 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 19999050 . C . . END=19999050 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,686 +chr20 19999051 . A . . END=19999056 GT:DP:GQ:MIN_DP:PL 0/0:21:57:20:0,57,855 +chr20 19999057 . C . . END=19999059 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,900 +chr20 19999060 . A . . END=19999064 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19999065 . A . . END=19999066 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 19999067 . C . . END=19999067 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 19999068 . C . . END=19999080 GT:DP:GQ:MIN_DP:PL 0/0:22:60:21:0,60,710 +chr20 19999081 . C . . END=19999093 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,814 +chr20 19999094 . C . . END=19999096 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,918 +chr20 19999097 . T . . END=19999097 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,949 +chr20 19999098 . A . . END=19999099 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,988 +chr20 19999100 . A . . END=19999110 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1003 +chr20 19999111 . C . . END=19999111 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1123 +chr20 19999112 . A . . END=19999122 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1158 +chr20 19999123 . T . . END=19999124 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +chr20 19999125 . T . . END=19999126 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1058 +chr20 19999127 . C . . END=19999129 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +chr20 19999130 . A . . END=19999130 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,984 +chr20 19999131 . C . . END=19999133 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 19999134 . G . . END=19999135 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1023 +chr20 19999136 . G . . END=19999136 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1053 +chr20 19999137 . A . . END=19999137 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1047 +chr20 19999138 . A . . END=19999138 GT:DP:GQ:MIN_DP:PL 0/0:31:59:31:0,59,1008 +chr20 19999139 . G . . END=19999144 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19999145 . G . . END=19999156 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +chr20 19999157 . G . . END=19999157 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,904 +chr20 19999158 . G . . END=19999160 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 19999161 . A . . END=19999161 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19999162 . A . . END=19999162 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,973 +chr20 19999163 . G . . END=19999163 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,973 +chr20 19999164 . G . . END=19999164 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,1008 +chr20 19999165 . C . . END=19999166 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19999167 . G . . END=19999167 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,952 +chr20 19999168 . T . . END=19999168 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,973 +chr20 19999169 . G . . END=19999169 GT:DP:GQ:MIN_DP:PL 0/0:30:51:30:0,51,884 +chr20 19999170 . G . . END=19999170 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chr20 19999171 . G . . END=19999181 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1002 +chr20 19999182 . C . . END=19999182 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1029 +chr20 19999183 . C . . END=19999185 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1013 +chr20 19999186 . G . . END=19999186 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chr20 19999187 . T . . END=19999191 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1013 +chr20 19999192 . G . . END=19999192 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,1008 +chr20 19999193 . C . . END=19999194 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 19999195 . G . . END=19999196 GT:DP:GQ:MIN_DP:PL 0/0:31:76:30:0,76,974 +chr20 19999197 . G . . END=19999200 GT:DP:GQ:MIN_DP:PL 0/0:31:87:29:0,87,978 +chr20 19999201 . C . . END=19999202 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19999203 . T . . END=19999203 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1013 +chr20 19999204 . T . . END=19999206 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1002 +chr20 19999207 . G . . END=19999207 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,953 +chr20 19999208 . C . . END=19999209 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1033 +chr20 19999210 . A . . END=19999210 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,984 +chr20 19999211 . G . . END=19999212 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,1013 +chr20 19999213 . T . . END=19999219 GT:DP:GQ:MIN_DP:PL 0/0:33:84:30:0,84,1007 +chr20 19999220 . C . . END=19999225 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1350 +chr20 19999226 . T . . END=19999235 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +chr20 19999236 . T . . END=19999236 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1003 +chr20 19999237 . T . . END=19999237 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chr20 19999238 . T . . END=19999241 GT:DP:GQ:MIN_DP:PL 0/0:31:72:29:0,72,1080 +chr20 19999242 . C . . END=19999244 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,945 +chr20 19999245 . T . . END=19999245 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,883 +chr20 19999246 . A . . END=19999249 GT:DP:GQ:MIN_DP:PL 0/0:28:60:26:0,60,900 +chr20 19999250 . A . . END=19999252 GT:DP:GQ:MIN_DP:PL 0/0:25:57:24:0,57,855 +chr20 19999253 . C . . END=19999253 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,685 +chr20 19999254 . A . . END=19999255 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 19999256 . G . . END=19999256 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,695 +chr20 19999257 . G . . END=19999258 GT:DP:GQ:MIN_DP:PL 0/0:23:57:21:0,57,855 +chr20 19999259 . T . . END=19999259 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 +chr20 19999260 . T . . END=19999260 GT:DP:GQ:MIN_DP:PL 0/0:20:45:20:0,45,586 +chr20 19999261 . A . . END=19999261 GT:DP:GQ:MIN_DP:PL 0/0:21:51:21:0,51,765 +chr20 19999262 . T . . END=19999267 GT:DP:GQ:MIN_DP:PL 0/0:21:48:20:0,48,720 +chr20 19999268 . C . . END=19999269 GT:DP:GQ:MIN_DP:PL 0/0:21:51:20:0,51,765 +chr20 19999270 . C . . END=19999271 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 19999272 . G . . END=19999272 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 19999273 . T . . END=19999277 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,900 +chr20 19999278 . T . . END=19999278 GT:DP:GQ:MIN_DP:PL 0/0:24:8:24:0,8,657 +chr20 19999279 . A . . END=19999279 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,780 +chr20 19999280 . A . . END=19999280 GT:DP:GQ:MIN_DP:PL 0/0:25:26:25:0,26,741 +chr20 19999281 . A . . END=19999281 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 19999282 . A . . END=19999294 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,824 +chr20 19999295 . A . . END=19999298 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,899 +chr20 19999299 . T . . END=19999299 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,860 +chr20 19999300 . G . . END=19999300 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,909 +chr20 19999301 . T . . END=19999309 GT:DP:GQ:MIN_DP:PL 0/0:28:75:25:0,75,869 +chr20 19999310 . A . . END=19999317 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19999318 . A . . END=19999318 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 19999319 . C . . END=19999332 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,929 +chr20 19999333 . A . . END=19999333 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,860 +chr20 19999334 . C . . END=19999354 GT:DP:GQ:MIN_DP:PL 0/0:30:81:27:0,81,918 +chr20 19999355 . G . . END=19999355 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,929 +chr20 19999356 . C . . END=19999362 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 19999363 . A . . END=19999363 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,963 +chr20 19999364 . A . . END=19999365 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19999366 . T . . END=19999366 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,964 +chr20 19999367 . C . . END=19999392 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,939 +chr20 19999393 . A . . END=19999396 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1103 +chr20 19999397 . T . . END=19999397 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1078 +chr20 19999398 . A . . END=19999399 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 19999400 . A . . END=19999413 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +chr20 19999414 . C . . END=19999415 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1158 +chr20 19999416 . G . . END=19999427 GT:DP:GQ:MIN_DP:PL 0/0:33:81:29:0,81,1215 +chr20 19999428 . A . . END=19999428 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,974 +chr20 19999429 . G . . END=19999432 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 19999433 . T . . END=19999433 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,958 +chr20 19999434 . C . . END=19999452 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1068 +chr20 19999453 . A . . END=19999453 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1078 +chr20 19999454 . A . . END=19999454 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,984 +chr20 19999455 . C . . END=19999456 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1033 +chr20 19999457 . C . . END=19999458 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 19999459 . C . . END=19999462 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 19999463 . G . . END=19999463 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1103 +chr20 19999464 . T . . END=19999470 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +chr20 19999471 . G . . END=19999472 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19999473 . A . . END=19999473 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1123 +chr20 19999474 . G . . END=19999475 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chr20 19999476 . C . . END=19999480 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1077 +chr20 19999481 . G . . END=19999481 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1086 +chr20 19999482 . G . . END=19999487 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1097 +chr20 19999488 . G . . END=19999501 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1082 +chr20 19999502 . T . . END=19999503 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +chr20 19999504 . C . . END=19999517 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 19999518 . G . . END=19999521 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +chr20 19999522 . C . . END=19999526 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 19999527 . T . . END=19999527 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1083 +chr20 19999528 . T . . END=19999529 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1127 +chr20 19999530 . A . . END=19999530 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 19999531 . G . . END=19999533 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +chr20 19999534 . G . . END=19999544 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 19999545 . A . . END=19999545 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 19999546 . T . . END=19999564 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,1033 +chr20 19999565 . T . . END=19999578 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +chr20 19999579 . C . . END=19999579 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,949 +chr20 19999580 . T . . END=19999588 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +chr20 19999589 . T . . END=19999589 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,978 +chr20 19999590 . T . . END=19999599 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,953 +chr20 19999600 . A . . END=19999600 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,928 +chr20 19999601 . A . . END=19999607 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +chr20 19999608 . T . . END=19999608 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,1008 +chr20 19999609 . G . . END=19999630 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1043 +chr20 19999631 . T . . END=19999631 GT:DP:GQ:MIN_DP:PL 0/0:30:61:30:0,61,945 +chr20 19999632 . A . . END=19999633 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 19999634 . C . . END=19999640 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 19999641 . C . . END=19999645 GT:DP:GQ:MIN_DP:PL 0/0:32:82:31:0,82,1053 +chr20 19999646 . A . . END=19999648 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +chr20 19999649 . C . . END=19999649 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +chr20 19999650 . T . . END=19999658 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 19999659 . C . . END=19999659 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1058 +chr20 19999660 . T . . END=19999667 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1082 +chr20 19999668 . G . . END=19999668 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 19999669 . T . . END=19999672 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chr20 19999673 . A . . END=19999673 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1058 +chr20 19999674 . G . . END=19999685 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1028 +chr20 19999686 . C . . END=19999690 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +chr20 19999691 . C . . END=19999695 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 19999696 . C . . END=19999702 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chr20 19999703 . T . . END=19999708 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1002 +chr20 19999709 . A . . END=19999709 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1008 +chr20 19999710 . A . . END=19999718 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1002 +chr20 19999719 . G . . END=19999743 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1063 +chr20 19999744 . A . . END=19999744 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chr20 19999745 . C . . END=19999764 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 19999765 . T . . END=19999765 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,999 +chr20 19999766 . G . . END=19999776 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +chr20 19999777 . C . . END=19999777 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,958 +chr20 19999778 . G . . END=19999779 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 19999780 . C . . END=19999786 GT:DP:GQ:MIN_DP:PL 0/0:29:78:28:0,78,1170 +chr20 19999787 . T . . END=19999787 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +chr20 19999788 . A . . END=19999809 GT:DP:GQ:MIN_DP:PL 0/0:28:72:25:0,72,1080 +chr20 19999810 . C . . END=19999813 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 19999814 . T . . END=19999814 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 19999815 . A . . END=19999816 GT:DP:GQ:MIN_DP:PL 0/0:26:69:25:0,69,1035 +chr20 19999817 . T . . END=19999819 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +chr20 19999820 . G . . END=19999825 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,909 +chr20 19999826 . T . . END=19999826 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,849 +chr20 19999827 . C . . END=19999827 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19999828 . T . . END=19999836 GT:DP:GQ:MIN_DP:PL 0/0:28:73:28:0,73,909 +chr20 19999837 . T . . END=19999837 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,884 +chr20 19999838 . T . . END=19999845 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,849 +chr20 19999846 . A . . END=19999846 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,815 +chr20 19999847 . T . . END=19999854 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chr20 19999855 . C . . END=19999855 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,833 +chr20 19999856 . T . . END=19999862 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,839 +chr20 19999863 . T . . END=19999863 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,884 +chr20 19999864 . C . . END=19999866 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,873 +chr20 19999867 . A . . END=19999876 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,963 +chr20 19999877 . C . . END=19999879 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +chr20 19999880 . T . . END=19999882 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 19999883 . G . . END=19999883 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,914 +chr20 19999884 . C . . END=19999885 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +chr20 19999886 . C . . END=19999886 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,828 +chr20 19999887 . A . . END=19999892 GT:DP:GQ:MIN_DP:PL 0/0:27:72:24:0,72,824 +chr20 19999893 . A . . END=19999894 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19999895 . T . . END=19999895 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chr20 19999896 . A . . END=19999899 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 19999900 . G . . END=19999902 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,859 +chr20 19999903 . T . . END=19999905 GT:DP:GQ:MIN_DP:PL 0/0:28:69:27:0,69,1035 +chr20 19999906 . T . . END=19999911 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 19999912 . A . . END=19999915 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 19999916 . A . . END=19999916 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,974 +chr20 19999917 . A . . END=19999930 GT:DP:GQ:MIN_DP:PL 0/0:30:81:27:0,81,899 +chr20 19999931 . C . . END=19999931 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,968 +chr20 19999932 . C . . END=19999933 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +chr20 19999934 . T . . END=19999934 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1047 +chr20 19999935 . T . . END=19999944 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +chr20 19999945 . T . . END=19999945 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1013 +chr20 19999946 . A . . END=19999954 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,982 +chr20 19999955 . T . . END=19999955 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1048 +chr20 19999956 . C . . END=19999958 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 19999959 . A . . END=19999959 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1058 +chr20 19999960 . A . . END=19999961 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +chr20 19999962 . T . . END=19999962 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1062 +chr20 19999963 . C . . END=19999971 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +chr20 19999972 . T . . END=19999973 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1072 +chr20 19999974 . G . . END=19999974 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1018 +chr20 19999975 . T . . END=19999975 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chr20 19999976 . G . . END=19999976 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1028 +chr20 19999977 . T . . END=19999983 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1013 +chr20 19999984 . G . . END=19999987 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1097 +chr20 19999988 . C . . END=19999990 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1086 +chr20 19999991 . C . . END=19999993 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1101 +chr20 19999994 . A . . END=19999994 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1152 +chr20 19999995 . A . . END=20000005 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1156 +chr20 20000006 . T . . END=20000012 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,93,1395 +chr20 20000013 . G . . END=20000018 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +chr20 20000019 . A . . END=20000019 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1082 +chr20 20000020 . T . . END=20000021 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +chr20 20000022 . T . . END=20000022 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1172 +chr20 20000023 . A . . END=20000024 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +chr20 20000025 . A . . END=20000025 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1197 +chr20 20000026 . A . . END=20000026 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +chr20 20000027 . A . . END=20000027 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1217 +chr20 20000028 . G . . END=20000030 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +chr20 20000031 . T . . END=20000031 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1152 +chr20 20000032 . G . . END=20000036 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20000037 . A . . END=20000043 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +chr20 20000044 . C . . END=20000044 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,1068 +chr20 20000045 . A . . END=20000047 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +chr20 20000048 . A . . END=20000050 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20000051 . C . . END=20000051 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1013 +chr20 20000052 . A . . END=20000053 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +chr20 20000054 . G . . END=20000054 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,1033 +chr20 20000055 . T . . END=20000056 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1033 +chr20 20000057 . C . . END=20000066 GT:DP:GQ:MIN_DP:PL 0/0:30:72:28:0,72,1080 +chr20 20000067 . C . . END=20000067 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,855 +chr20 20000068 . A . . END=20000070 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 20000071 . T . . END=20000084 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,900 +chr20 20000085 . C . . END=20000085 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,780 +chr20 20000086 . T . . END=20000093 GT:DP:GQ:MIN_DP:PL 0/0:24:63:22:0,63,945 +chr20 20000094 . C . . END=20000095 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 20000096 . G . . END=20000104 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +chr20 20000105 . G . . END=20000107 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20000108 . T . . END=20000110 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 20000111 . C . . END=20000112 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 20000113 . T . . END=20000117 GT:DP:GQ:MIN_DP:PL 0/0:26:69:25:0,69,1035 +chr20 20000118 . C . . END=20000118 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20000119 . C . . END=20000119 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,780 +chr20 20000120 . A . . END=20000122 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,824 +chr20 20000123 . G . . END=20000123 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,770 +chr20 20000124 . G . . END=20000124 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,834 +chr20 20000125 . T . . END=20000131 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chr20 20000132 . C . . END=20000132 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,765 +chr20 20000133 . C . . END=20000135 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chr20 20000136 . C . . END=20000138 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,1080 +chr20 20000139 . G . . END=20000139 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chr20 20000140 . G . . END=20000141 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 20000142 . G . . END=20000142 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chr20 20000143 . A . . END=20000162 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,873 +chr20 20000163 . C . . END=20000169 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,66,990 +chr20 20000170 . T . . END=20000170 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chr20 20000171 . G . . END=20000171 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chr20 20000172 . A . . END=20000172 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chr20 20000173 . A . . END=20000173 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,845 +chr20 20000174 . A . . END=20000187 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,874 +chr20 20000188 . A . . END=20000188 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,825 +chr20 20000189 . A . . END=20000190 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,884 +chr20 20000191 . T . . END=20000191 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,939 +chr20 20000192 . G . . END=20000194 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chr20 20000195 . C . . END=20000206 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,913 +chr20 20000207 . T . . END=20000213 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1047 +chr20 20000214 . T . . END=20000219 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1117 +chr20 20000220 . T . . END=20000220 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1182 +chr20 20000221 . A . . END=20000225 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,100,1262 +chr20 20000226 . A . . END=20000226 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1207 +chr20 20000227 . A . . END=20000230 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +chr20 20000231 . T . . END=20000231 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1262 +chr20 20000232 . C . . END=20000236 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +chr20 20000237 . T . . END=20000237 GT:DP:GQ:MIN_DP:PL 0/0:37:37:37:0,37,1108 +chr20 20000238 . G . . END=20000241 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1166 +chr20 20000242 . A . . END=20000242 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1162 +chr20 20000243 . C . . END=20000253 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1132 +chr20 20000254 . C . . END=20000254 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chr20 20000255 . T . . END=20000256 GT:DP:GQ:MIN_DP:PL 0/0:38:72:37:0,72,1147 +chr20 20000257 . T . . END=20000257 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chr20 20000258 . T . . END=20000260 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +chr20 20000261 . G . . END=20000261 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1168 +chr20 20000262 . C . . END=20000262 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1113 +chr20 20000263 . T . . END=20000263 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 20000264 . A . . END=20000264 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1068 +chr20 20000265 . T . . END=20000276 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20000277 . T . . END=20000284 GT:DP:GQ:MIN_DP:PL 0/0:31:82:29:0,82,1053 +chr20 20000285 . G . . END=20000285 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,1008 +chr20 20000286 . G . . END=20000290 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chr20 20000291 . A . . END=20000291 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,984 +chr20 20000292 . A . . END=20000300 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chr20 20000301 . T . . END=20000305 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1023 +chr20 20000306 . T . . END=20000312 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20000313 . C . . END=20000329 GT:DP:GQ:MIN_DP:PL 0/0:29:75:26:0,75,894 +chr20 20000330 . G . . END=20000330 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,919 +chr20 20000331 . T . . END=20000333 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chr20 20000334 . C . . END=20000335 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20000336 . T . . END=20000340 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +chr20 20000341 . A . . END=20000343 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20000344 . C . . END=20000344 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 20000345 . C . . END=20000346 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 20000347 . T . . END=20000353 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +chr20 20000354 . G . . END=20000360 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,990 +chr20 20000361 . A . . END=20000362 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20000363 . A . . END=20000364 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chr20 20000365 . A . . END=20000372 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 20000373 . C . . END=20000406 GT:DP:GQ:MIN_DP:PL 0/0:24:60:21:0,60,730 +chr20 20000407 . C . . END=20000416 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,834 +chr20 20000417 . T . . END=20000431 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,963 +chr20 20000432 . C . . END=20000443 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1048 +chr20 20000444 . T . . END=20000498 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +chr20 20000499 . A . . END=20000499 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1276 +chr20 20000500 . T . . END=20000532 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1256 +chr20 20000533 . A . . END=20000533 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1340 +chr20 20000534 . C . . END=20000591 GT:DP:GQ:MIN_DP:PL 0/0:42:99:38:0,100,1232 +chr20 20000592 . A . . END=20000592 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1281 +chr20 20000593 . C . . END=20000659 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,102,1221 +chr20 20000660 . A . . END=20000660 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1232 +chr20 20000661 . A . . END=20000661 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chr20 20000662 . A . . END=20000666 GT:DP:GQ:MIN_DP:PL 0/0:39:93:38:0,93,1395 +chr20 20000667 . C . . END=20000667 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1221 +chr20 20000668 . T . . END=20000673 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +chr20 20000674 . T . . END=20000674 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1053 +chr20 20000675 . G . . END=20000682 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 20000683 . A . . END=20000684 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20000685 . A . . END=20000691 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +chr20 20000692 . C . . END=20000697 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1127 +chr20 20000698 . A . . END=20000698 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1168 +chr20 20000699 . T . . END=20000709 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1186 +chr20 20000710 . T . . END=20000710 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1192 +chr20 20000711 . C . . END=20000712 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20000713 . G . . END=20000714 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +chr20 20000715 . G . . END=20000717 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20000718 . G . . END=20000728 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +chr20 20000729 . G . . END=20000729 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +chr20 20000730 . G . . END=20000730 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20000731 . T . . END=20000737 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +chr20 20000738 . C . . END=20000739 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 20000740 . C . . END=20000747 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +chr20 20000748 . T . . END=20000748 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1009 +chr20 20000749 . A . . END=20000749 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chr20 20000750 . C . . END=20000750 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chr20 20000751 . A . . END=20000751 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chr20 20000752 . G . . END=20000770 GT:DP:GQ:MIN_DP:PL 0/0:28:72:25:0,72,869 +chr20 20000771 . C . . END=20000777 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,953 +chr20 20000778 . T . . END=20000778 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,894 +chr20 20000779 . G . . END=20000795 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,943 +chr20 20000796 . G . . END=20000797 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 20000798 . C . . END=20000803 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,1260 +chr20 20000804 . C . . END=20000806 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20000807 . T . . END=20000807 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1147 +chr20 20000808 . C . . END=20000812 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +chr20 20000813 . A . . END=20000815 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20000816 . C . . END=20000850 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1062 +chr20 20000851 . T . . END=20000852 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20000853 . T . . END=20000853 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1028 +chr20 20000854 . T . . END=20000854 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1077 +chr20 20000855 . C . . END=20000866 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1086 +chr20 20000867 . C . . END=20000867 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20000868 . A . . END=20000868 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 20000869 . A . . END=20000887 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,978 +chr20 20000888 . T . . END=20000890 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1027 +chr20 20000891 . T . . END=20000891 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1053 +chr20 20000892 . G . . END=20000909 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,1007 +chr20 20000910 . G . . END=20000912 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 20000913 . G . . END=20000914 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +chr20 20000915 . A . . END=20000919 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 20000920 . A . . END=20000924 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20000925 . A . . END=20000935 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +chr20 20000936 . G . . END=20000944 GT:DP:GQ:MIN_DP:PL 0/0:30:72:28:0,72,939 +chr20 20000945 . C . . END=20000949 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,990 +chr20 20000950 . C . . END=20000950 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,819 +chr20 20000951 . T . . END=20000951 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chr20 20000952 . T . . END=20000952 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20000953 . C . . END=20000953 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,839 +chr20 20000954 . C . . END=20000956 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +chr20 20000957 . G . . END=20000957 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chr20 20000958 . T . . END=20000961 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20000962 . G . . END=20000968 GT:DP:GQ:MIN_DP:PL 0/0:25:69:24:0,69,1035 +chr20 20000969 . A . . END=20000969 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,775 +chr20 20000970 . A . . END=20000972 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chr20 20000973 . G . . END=20000975 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,804 +chr20 20000976 . G . . END=20000993 GT:DP:GQ:MIN_DP:PL 0/0:24:66:22:0,66,745 +chr20 20000994 . C . . END=20000998 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chr20 20000999 . T . . END=20001004 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,909 +chr20 20001005 . T . . END=20001008 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1003 +chr20 20001009 . T . . END=20001016 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,968 +chr20 20001017 . A . . END=20001017 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,964 +chr20 20001018 . A . . END=20001019 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chr20 20001020 . A . . END=20001020 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,954 +chr20 20001021 . G . . END=20001021 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chr20 20001022 . C . . END=20001024 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1003 +chr20 20001025 . T . . END=20001029 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,978 +chr20 20001030 . T . . END=20001060 GT:DP:GQ:MIN_DP:PL 0/0:29:72:25:0,72,829 +chr20 20001061 . C . . END=20001065 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,929 +chr20 20001066 . C . . END=20001066 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,904 +chr20 20001067 . A . . END=20001068 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,968 +chr20 20001069 . A . . END=20001069 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1043 +chr20 20001070 . G . . END=20001071 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,998 +chr20 20001072 . C . . END=20001080 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,993 +chr20 20001081 . C . . END=20001082 GT:DP:GQ:MIN_DP:PL 0/0:33:87:31:0,87,1305 +chr20 20001083 . A . . END=20001132 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1043 +chr20 20001133 . T . . END=20001136 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +chr20 20001137 . C . . END=20001138 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +chr20 20001139 . T . . END=20001139 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +chr20 20001140 . T . . END=20001151 GT:DP:GQ:MIN_DP:PL 0/0:29:75:27:0,75,1125 +chr20 20001152 . A . . END=20001157 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,889 +chr20 20001158 . A . . END=20001158 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,904 +chr20 20001159 . T . . END=20001162 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,943 +chr20 20001163 . A . . END=20001163 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,919 +chr20 20001164 . T . . END=20001164 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,919 +chr20 20001165 . G . . END=20001167 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 20001168 . T . . END=20001168 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,974 +chr20 20001169 . C . . END=20001169 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20001170 . A . . END=20001170 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,929 +chr20 20001171 . A . . END=20001175 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20001176 . C . . END=20001176 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,884 +chr20 20001177 . C . . END=20001177 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,849 +chr20 20001178 . T . . END=20001182 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,899 +chr20 20001183 . T . . END=20001187 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,973 +chr20 20001188 . T . . END=20001189 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chr20 20001190 . C . . END=20001195 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,1080 +chr20 20001196 . A . . END=20001217 GT:DP:GQ:MIN_DP:PL 0/0:26:61:24:0,61,800 +chr20 20001218 . G . . END=20001220 GT:DP:GQ:MIN_DP:PL 0/0:29:73:28:0,73,919 +chr20 20001221 . T . . END=20001221 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20001222 . T . . END=20001224 GT:DP:GQ:MIN_DP:PL 0/0:28:78:26:0,78,833 +chr20 20001225 . A . . END=20001226 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20001227 . G . . END=20001232 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +chr20 20001233 . A . . END=20001233 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,839 +chr20 20001234 . T . . END=20001244 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,819 +chr20 20001245 . G . . END=20001245 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,839 +chr20 20001246 . A . . END=20001246 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chr20 20001247 . A . . END=20001247 GT:DP:GQ:MIN_DP:PL 0/0:27:22:27:0,22,780 +chr20 20001248 . A . . END=20001249 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,874 +chr20 20001250 . A . . END=20001250 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,860 +chr20 20001251 . C . . END=20001251 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chr20 20001252 . T . . END=20001252 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,919 +chr20 20001253 . T . . END=20001254 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +chr20 20001255 . A . . END=20001260 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,929 +chr20 20001261 . A . . END=20001261 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,863 +chr20 20001262 . A . . END=20001266 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,923 +chr20 20001267 . T . . END=20001267 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,949 +chr20 20001268 . T . . END=20001268 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1033 +chr20 20001269 . T . . END=20001269 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,984 +chr20 20001270 . T . . END=20001288 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,957 +chr20 20001289 . T . . END=20001295 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +chr20 20001296 . G . . END=20001296 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20001297 . C . . END=20001315 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,784 +chr20 20001316 . C . . END=20001317 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,774 +chr20 20001318 . C . . END=20001318 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 20001319 . T . . END=20001337 GT:DP:GQ:MIN_DP:PL 0/0:26:64:24:0,64,815 +chr20 20001338 . C . . END=20001340 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 20001341 . G . . END=20001341 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,749 +chr20 20001342 . C . . END=20001346 GT:DP:GQ:MIN_DP:PL 0/0:31:72:27:0,72,1080 +chr20 20001347 . C . . END=20001352 GT:DP:GQ:MIN_DP:PL 0/0:33:63:33:0,63,945 +chr20 20001353 . T . . END=20001354 GT:DP:GQ:MIN_DP:PL 0/0:35:57:34:0,57,855 +chr20 20001355 . C . . END=20001355 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,810 +chr20 20001356 . T . . END=20001357 GT:DP:GQ:MIN_DP:PL 0/0:34:39:34:0,39,585 +chr20 20001358 . T . . END=20001360 GT:DP:GQ:MIN_DP:PL 0/0:33:42:32:0,42,630 +chr20 20001361 . C . . END=20001361 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,825 +chr20 20001362 . CTT C, 103.73 . BaseQRankSum=-0.663;ClippingRankSum=-1.406;DP=22;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=1.276;RAW_MQ=79200.00;ReadPosRankSum=-0.201 GT:AD:DP:GQ:PL:SB 0/1:7,7,0:14:99:141,0,151,162,172,334:3,4,1,6 +chr20 20001365 . T . . END=20001365 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,681 +chr20 20001366 . T . . END=20001366 GT:DP:GQ:MIN_DP:PL 0/0:32:57:32:0,57,855 +chr20 20001367 . T . . END=20001367 GT:DP:GQ:MIN_DP:PL 0/0:31:59:31:0,59,1008 +chr20 20001368 . T . . END=20001387 GT:DP:GQ:MIN_DP:PL 0/0:27:60:26:0,60,900 +chr20 20001388 . T . . END=20001388 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,834 +chr20 20001389 . A . . END=20001389 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +chr20 20001390 . C . . END=20001390 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,536 +chr20 20001391 . A . . END=20001394 GT:DP:GQ:MIN_DP:PL 0/0:25:66:24:0,66,990 +chr20 20001395 . A . . END=20001395 GT:DP:GQ:MIN_DP:PL 0/0:26:29:26:0,29,694 +chr20 20001396 . G . . END=20001396 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,653 +chr20 20001397 . C . . END=20001397 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,606 +chr20 20001398 . C . . END=20001398 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,773 +chr20 20001399 . T . . END=20001400 GT:DP:GQ:MIN_DP:PL 0/0:29:66:29:0,66,990 +chr20 20001401 . C . . END=20001401 GT:DP:GQ:MIN_DP:PL 0/0:24:13:24:0,13,675 +chr20 20001402 . A . . END=20001402 GT:DP:GQ:MIN_DP:PL 0/0:29:3:29:0,3,780 +chr20 20001403 . T . . END=20001403 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +chr20 20001404 . G . . END=20001404 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,614 +chr20 20001405 . T . . END=20001409 GT:DP:GQ:MIN_DP:PL 0/0:29:69:27:0,69,1035 +chr20 20001410 . A . . END=20001410 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,552 +chr20 20001411 . T . . END=20001411 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20001412 . A . . END=20001412 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,595 +chr20 20001413 . T . . END=20001413 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20001414 . A . . END=20001414 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,535 +chr20 20001415 . T . . END=20001415 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20001416 . T . . END=20001416 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chr20 20001417 . T . . END=20001417 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,859 +chr20 20001418 . C . . END=20001419 GT:DP:GQ:MIN_DP:PL 0/0:26:0:25:0,0,601 +chr20 20001420 . T . . END=20001420 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,784 +chr20 20001421 . A . . END=20001421 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 +chr20 20001422 . G . . END=20001422 GT:DP:GQ:MIN_DP:PL 0/0:25:25:25:0,25,638 +chr20 20001423 . A . . END=20001423 GT:DP:GQ:MIN_DP:PL 0/0:26:29:26:0,29,765 +chr20 20001424 . A . . END=20001424 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,745 +chr20 20001425 . A . . END=20001425 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,606 +chr20 20001426 . T . . END=20001427 GT:DP:GQ:MIN_DP:PL 0/0:27:57:27:0,57,855 +chr20 20001428 . T . . END=20001428 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,790 +chr20 20001429 . T . . END=20001431 GT:DP:GQ:MIN_DP:PL 0/0:22:51:21:0,51,765 +chr20 20001432 . T . . END=20001433 GT:DP:GQ:MIN_DP:PL 0/0:22:54:21:0,54,810 +chr20 20001434 . G . . END=20001434 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,561 +chr20 20001435 . C . . END=20001436 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 20001437 . G . . END=20001437 GT:DP:GQ:MIN_DP:PL 0/0:20:35:20:0,35,585 +chr20 20001438 . T . . END=20001440 GT:DP:GQ:MIN_DP:PL 0/0:20:54:19:0,54,810 +chr20 20001441 . C . . END=20001441 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,595 +chr20 20001442 . A . . END=20001442 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +chr20 20001443 . G . . END=20001444 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 20001445 . T . . END=20001450 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,675 +chr20 20001451 . G . . END=20001451 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,695 +chr20 20001452 . T . . END=20001452 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,745 +chr20 20001453 . C . . END=20001453 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,685 +chr20 20001454 . A . . END=20001456 GT:DP:GQ:MIN_DP:PL 0/0:22:60:20:0,60,685 +chr20 20001457 . A . . END=20001457 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,685 +chr20 20001458 . T . . END=20001459 GT:DP:GQ:MIN_DP:PL 0/0:22:63:21:0,63,710 +chr20 20001460 . G . . END=20001460 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,675 +chr20 20001461 . G . . END=20001469 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,724 +chr20 20001470 . T . . END=20001470 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 20001471 . A . . END=20001476 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,66,990 +chr20 20001477 . G . . END=20001477 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,814 +chr20 20001478 . T . . END=20001481 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,990 +chr20 20001482 . T . . END=20001485 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chr20 20001486 . A . . END=20001486 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,880 +chr20 20001487 . A . . END=20001491 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chr20 20001492 . T . . END=20001497 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,933 +chr20 20001498 . A . . END=20001500 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1023 +chr20 20001501 . A . . END=20001501 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,988 +chr20 20001502 . T . . END=20001505 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1028 +chr20 20001506 . T . . END=20001521 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1117 +chr20 20001522 . A . . END=20001522 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 20001523 . A . . END=20001529 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 20001530 . A . . END=20001530 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1207 +chr20 20001531 . A . . END=20001531 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +chr20 20001532 . A . . END=20001532 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +chr20 20001533 . A . . END=20001533 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20001534 . T . . END=20001546 GT:DP:GQ:MIN_DP:PL 0/0:35:93:32:0,93,1395 +chr20 20001547 . G . . END=20001547 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1092 +chr20 20001548 . G . . END=20001548 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1027 +chr20 20001549 . A . . END=20001552 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1078 +chr20 20001553 . G . . END=20001553 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1057 +chr20 20001554 . A . . END=20001554 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1078 +chr20 20001555 . G . . END=20001566 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,1062 +chr20 20001567 . T . . END=20001568 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20001569 . T . . END=20001569 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1123 +chr20 20001570 . A . . END=20001571 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20001572 . A . . END=20001572 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1227 +chr20 20001573 . G . . END=20001582 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1172 +chr20 20001583 . T . . END=20001583 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 20001584 . G . . END=20001598 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1281 +chr20 20001599 . G . . END=20001599 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1227 +chr20 20001600 . G . . END=20001612 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,105,1221 +chr20 20001613 . G . . END=20001613 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1326 +chr20 20001614 . A . . END=20001663 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1485 +chr20 20001664 . A . . END=20001692 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 20001693 . C . . END=20001701 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +chr20 20001702 . G . . END=20001702 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,968 +chr20 20001703 . T . . END=20001709 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chr20 20001710 . G . . END=20001710 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20001711 . T . . END=20001714 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +chr20 20001715 . T . . END=20001721 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 20001722 . T . . END=20001722 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1111 +chr20 20001723 . T . . END=20001723 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 20001724 . T . . END=20001724 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20001725 . G . . END=20001740 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,1013 +chr20 20001741 . A . . END=20001744 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1147 +chr20 20001745 . T . . END=20001752 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +chr20 20001753 . A . . END=20001753 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20001754 . G . . END=20001754 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1132 +chr20 20001755 . G . . END=20001758 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20001759 . G . . END=20001767 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +chr20 20001768 . G . . END=20001771 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +chr20 20001772 . A . . END=20001784 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,988 +chr20 20001785 . G . . END=20001791 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 20001792 . A . . END=20001817 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1276 +chr20 20001818 . T . . END=20001818 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1256 +chr20 20001819 . G . . END=20001838 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,106,1291 +chr20 20001839 . C . . END=20001839 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1296 +chr20 20001840 . T . . END=20001863 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1332 +chr20 20001864 . A . . END=20001864 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +chr20 20001865 . G . . END=20001874 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,99,1142 +chr20 20001875 . C . . END=20001875 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1102 +chr20 20001876 . C . . END=20001876 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1117 +chr20 20001877 . T . . END=20001877 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1096 +chr20 20001878 . A . . END=20001882 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +chr20 20001883 . T . . END=20001883 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1252 +chr20 20001884 . A . . END=20001891 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1301 +chr20 20001892 . G . . END=20001892 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1156 +chr20 20001893 . T . . END=20001918 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1181 +chr20 20001919 . T . . END=20001919 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1246 +chr20 20001920 . C . . END=20001926 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +chr20 20001927 . A . . END=20001931 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +chr20 20001932 . T . . END=20001937 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +chr20 20001938 . G . . END=20001943 GT:DP:GQ:MIN_DP:PL 0/0:33:78:29:0,78,1170 +chr20 20001944 . A . . END=20001944 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20001945 . G . . END=20001945 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,964 +chr20 20001946 . A . . END=20001951 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,919 +chr20 20001952 . T . . END=20001952 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,929 +chr20 20001953 . T . . END=20001959 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,929 +chr20 20001960 . G . . END=20001978 GT:DP:GQ:MIN_DP:PL 0/0:28:73:25:0,73,859 +chr20 20001979 . A . . END=20001980 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20001981 . T . . END=20001981 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,914 +chr20 20001982 . C . . END=20001986 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,933 +chr20 20001987 . A . . END=20002006 GT:DP:GQ:MIN_DP:PL 0/0:27:72:24:0,72,824 +chr20 20002007 . C . . END=20002007 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,810 +chr20 20002008 . C . . END=20002014 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 20002015 . A . . END=20002015 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,855 +chr20 20002016 . T . . END=20002016 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 20002017 . T . . END=20002017 GT:DP:GQ:MIN_DP:PL 0/0:25:60:25:0,60,779 +chr20 20002018 . A . . END=20002019 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chr20 20002020 . A . . END=20002022 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +chr20 20002023 . T . . END=20002023 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,855 +chr20 20002024 . T . . END=20002024 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,900 +chr20 20002025 . A . . END=20002030 GT:DP:GQ:MIN_DP:PL 0/0:25:54:22:0,54,810 +chr20 20002031 . A . . END=20002035 GT:DP:GQ:MIN_DP:PL 0/0:20:57:19:0,57,651 +chr20 20002036 . A . . END=20002040 GT:DP:GQ:MIN_DP:PL 0/0:21:60:20:0,60,695 +chr20 20002041 . T . . END=20002042 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 20002043 . G . . END=20002045 GT:DP:GQ:MIN_DP:PL 0/0:20:54:19:0,54,810 +chr20 20002046 . C . . END=20002046 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,640 +chr20 20002047 . C . . END=20002048 GT:DP:GQ:MIN_DP:PL 0/0:21:54:20:0,54,810 +chr20 20002049 . G . . END=20002049 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chr20 20002050 . A . . END=20002052 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chr20 20002053 . C . . END=20002053 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,522 +chr20 20002054 . C . . END=20002057 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chr20 20002058 . T . . END=20002060 GT:DP:GQ:MIN_DP:PL 0/0:18:51:17:0,51,591 +chr20 20002061 . T . . END=20002062 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,616 +chr20 20002063 . T . . END=20002063 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,591 +chr20 20002064 . A . . END=20002065 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,606 +chr20 20002066 . A . . END=20002066 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 20002067 . A . . END=20002067 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chr20 20002068 . T . . END=20002070 GT:DP:GQ:MIN_DP:PL 0/0:21:57:20:0,57,855 +chr20 20002071 . G . . END=20002071 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,671 +chr20 20002072 . G . . END=20002072 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chr20 20002073 . C . . END=20002073 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,675 +chr20 20002074 . T . . END=20002084 GT:DP:GQ:MIN_DP:PL 0/0:22:57:20:0,57,855 +chr20 20002085 . T . . END=20002087 GT:DP:GQ:MIN_DP:PL 0/0:22:60:21:0,60,900 +chr20 20002088 . A . . END=20002088 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,730 +chr20 20002089 . T . . END=20002089 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +chr20 20002090 . A . . END=20002090 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,720 +chr20 20002091 . A . . END=20002092 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 +chr20 20002093 . A . . END=20002093 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chr20 20002094 . T . . END=20002099 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 +chr20 20002100 . A . . END=20002100 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,716 +chr20 20002101 . T . . END=20002101 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,671 +chr20 20002102 . A . . END=20002105 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,735 +chr20 20002106 . G . . END=20002106 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,695 +chr20 20002107 . A . . END=20002115 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,900 +chr20 20002116 . T . . END=20002116 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,775 +chr20 20002117 . G . . END=20002128 GT:DP:GQ:MIN_DP:PL 0/0:22:63:21:0,63,700 +chr20 20002129 . A . . END=20002129 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,755 +chr20 20002130 . A . . END=20002131 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chr20 20002132 . A . . END=20002132 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,765 +chr20 20002133 . A . . END=20002134 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,780 +chr20 20002135 . C . . END=20002135 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,695 +chr20 20002136 . A . . END=20002136 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,710 +chr20 20002137 . A . . END=20002139 GT:DP:GQ:MIN_DP:PL 0/0:23:66:22:0,66,744 +chr20 20002140 . T . . END=20002140 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,741 +chr20 20002141 . A . . END=20002142 GT:DP:GQ:MIN_DP:PL 0/0:24:66:23:0,66,990 +chr20 20002143 . A . . END=20002143 GT:DP:GQ:MIN_DP:PL 0/0:24:43:24:0,43,726 +chr20 20002144 . T . . END=20002147 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,904 +chr20 20002148 . C . . END=20002160 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,939 +chr20 20002161 . G . . END=20002163 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1058 +chr20 20002164 . A . . END=20002164 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1127 +chr20 20002165 . T . . END=20002165 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1103 +chr20 20002166 . T . . END=20002176 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1137 +chr20 20002177 . T . . END=20002184 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 20002185 . A . . END=20002185 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20002186 . C . . END=20002186 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1217 +chr20 20002187 . C . . END=20002189 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +chr20 20002190 . T . . END=20002190 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1147 +chr20 20002191 . T . . END=20002193 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1117 +chr20 20002194 . C . . END=20002194 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1066 +chr20 20002195 . A . . END=20002195 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1137 +chr20 20002196 . G . . END=20002196 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1107 +chr20 20002197 . G . . END=20002198 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20002199 . G . . END=20002199 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1207 +chr20 20002200 . C . . END=20002213 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1232 +chr20 20002214 . G . . END=20002214 GT:DP:GQ:MIN_DP:PL 0/0:38:65:38:0,65,1192 +chr20 20002215 . T . . END=20002216 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +chr20 20002217 . T . . END=20002217 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1286 +chr20 20002218 . T . . END=20002233 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1106 +chr20 20002234 . A . . END=20002234 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1276 +chr20 20002235 . G . . END=20002235 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1262 +chr20 20002236 . G . . END=20002247 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1256 +chr20 20002248 . A . . END=20002248 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1221 +chr20 20002249 . C . . END=20002285 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1167 +chr20 20002286 . A . . END=20002293 GT:DP:GQ:MIN_DP:PL 0/0:39:90:35:0,90,1350 +chr20 20002294 . G . . END=20002297 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +chr20 20002298 . T . . END=20002326 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,1003 +chr20 20002327 . T . . END=20002330 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 +chr20 20002331 . G . . END=20002336 GT:DP:GQ:MIN_DP:PL 0/0:34:75:32:0,75,1125 +chr20 20002337 . C . . END=20002344 GT:DP:GQ:MIN_DP:PL 0/0:32:60:30:0,60,900 +chr20 20002345 . C . . END=20002345 GT:DP:GQ:MIN_DP:PL 0/0:31:57:31:0,57,855 +chr20 20002346 . T . . END=20002358 GT:DP:GQ:MIN_DP:PL 0/0:29:60:27:0,60,900 +chr20 20002359 . T . . END=20002360 GT:DP:GQ:MIN_DP:PL 0/0:29:57:29:0,57,855 +chr20 20002361 . T . . END=20002364 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,810 +chr20 20002365 . A . . END=20002368 GT:DP:GQ:MIN_DP:PL 0/0:29:51:27:0,51,765 +chr20 20002369 . T . . END=20002371 GT:DP:GQ:MIN_DP:PL 0/0:26:45:26:0,45,675 +chr20 20002372 . T . . END=20002377 GT:DP:GQ:MIN_DP:PL 0/0:28:42:26:0,42,630 +chr20 20002378 . AT A, 237.73 . BaseQRankSum=0.739;ClippingRankSum=-0.575;DP=28;ExcessHet=3.0103;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.684;RAW_MQ=100800.00;ReadPosRankSum=0.684 GT:AD:DP:GQ:PL:SB 0/1:14,11,0:25:99:275,0,369,317,403,720:7,7,7,4 +chr20 20002380 . T . . END=20002380 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,139 +chr20 20002381 . T . . END=20002382 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chr20 20002383 . T . . END=20002385 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20002386 . A . . END=20002386 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20002387 . A . . END=20002394 GT:DP:GQ:MIN_DP:PL 0/0:28:73:27:0,73,899 +chr20 20002395 . T . . END=20002412 GT:DP:GQ:MIN_DP:PL 0/0:26:61:24:0,61,820 +chr20 20002413 . A . . END=20002413 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,824 +chr20 20002414 . A . . END=20002414 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,765 +chr20 20002415 . T . . END=20002419 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,814 +chr20 20002420 . T . . END=20002425 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,888 +chr20 20002426 . A . . END=20002426 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1047 +chr20 20002427 . A . . END=20002427 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1013 +chr20 20002428 . T . . END=20002436 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1023 +chr20 20002437 . A . . END=20002450 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1166 +chr20 20002451 . A . . END=20002451 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1207 +chr20 20002452 . A . . END=20002452 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1167 +chr20 20002453 . T . . END=20002467 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +chr20 20002468 . T . . END=20002469 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1232 +chr20 20002470 . T . . END=20002480 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +chr20 20002481 . A . . END=20002481 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1195 +chr20 20002482 . G . . END=20002502 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1271 +chr20 20002503 . C . . END=20002503 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1236 +chr20 20002504 . C . . END=20002516 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,114,1255 +chr20 20002517 . G . . END=20002517 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1276 +chr20 20002518 . G . . END=20002606 GT:DP:GQ:MIN_DP:PL 0/0:41:99:35:0,99,1287 +chr20 20002607 . A . . END=20002611 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1172 +chr20 20002612 . G . . END=20002618 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1152 +chr20 20002619 . A . . END=20002625 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +chr20 20002626 . G . . END=20002629 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1107 +chr20 20002630 . A . . END=20002638 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 20002639 . A . . END=20002639 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1157 +chr20 20002640 . G . . END=20002646 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 20002647 . C . . END=20002649 GT:DP:GQ:MIN_DP:PL 0/0:36:70:35:0,70,1077 +chr20 20002650 . C . . END=20002650 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1087 +chr20 20002651 . C . . END=20002655 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +chr20 20002656 . G . . END=20002671 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1167 +chr20 20002672 . T . . END=20002672 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1146 +chr20 20002673 . T . . END=20002706 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1242 +chr20 20002707 . A . . END=20002709 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 20002710 . A . . END=20002710 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20002711 . A . . END=20002724 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +chr20 20002725 . T . . END=20002725 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1107 +chr20 20002726 . G . . END=20002727 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 20002728 . A . . END=20002728 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1017 +chr20 20002729 . C . . END=20002733 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1007 +chr20 20002734 . A . . END=20002734 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1018 +chr20 20002735 . G . . END=20002744 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1082 +chr20 20002745 . G . . END=20002745 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1072 +chr20 20002746 . T . . END=20002754 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 20002755 . C . . END=20002759 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20002760 . C . . END=20002761 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,987 +chr20 20002762 . A . . END=20002762 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1093 +chr20 20002763 . C . . END=20002767 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1038 +chr20 20002768 . T . . END=20002776 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1077 +chr20 20002777 . A . . END=20002781 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +chr20 20002782 . C . . END=20002814 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +chr20 20002815 . G . . END=20002815 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20002816 . C . . END=20002816 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 20002817 . A . . END=20002822 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1023 +chr20 20002823 . G . . END=20002823 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1017 +chr20 20002824 . A . . END=20002825 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20002826 . A . . END=20002832 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chr20 20002833 . A . . END=20002835 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chr20 20002836 . C . . END=20002836 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20002837 . T . . END=20002848 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1003 +chr20 20002849 . C . . END=20002850 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20002851 . G . . END=20002853 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +chr20 20002854 . A . . END=20002854 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1063 +chr20 20002855 . T . . END=20002856 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20002857 . C . . END=20002876 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1092 +chr20 20002877 . G . . END=20002901 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1177 +chr20 20002902 . C . . END=20002906 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 20002907 . T . . END=20002908 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20002909 . A . . END=20002919 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 20002920 . G . . END=20002972 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,99,1152 +chr20 20002973 . A . . END=20002975 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 20002976 . T . . END=20002985 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +chr20 20002986 . T . . END=20002986 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1182 +chr20 20002987 . C . . END=20002989 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +chr20 20002990 . A . . END=20003000 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1103 +chr20 20003001 . A . . END=20003001 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20003002 . A . . END=20003002 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1092 +chr20 20003003 . T . . END=20003004 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1107 +chr20 20003005 . G . . END=20003014 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,1058 +chr20 20003015 . T . . END=20003023 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +chr20 20003024 . T . . END=20003030 GT:DP:GQ:MIN_DP:PL 0/0:29:78:27:0,78,1170 +chr20 20003031 . G . . END=20003038 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,878 +chr20 20003039 . A . . END=20003042 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +chr20 20003043 . G . . END=20003047 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +chr20 20003048 . C . . END=20003048 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,968 +chr20 20003049 . T . . END=20003055 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +chr20 20003056 . A . . END=20003056 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,974 +chr20 20003057 . T . . END=20003059 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +chr20 20003060 . G . . END=20003060 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,908 +chr20 20003061 . G . . END=20003062 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20003063 . T . . END=20003063 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 20003064 . G . . END=20003075 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +chr20 20003076 . C . . END=20003081 GT:DP:GQ:MIN_DP:PL 0/0:31:75:29:0,75,1125 +chr20 20003082 . A . . END=20003084 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +chr20 20003085 . A . . END=20003095 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +chr20 20003096 . G . . END=20003096 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,860 +chr20 20003097 . C . . END=20003112 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +chr20 20003113 . C . . END=20003114 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20003115 . G . . END=20003115 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,904 +chr20 20003116 . G . . END=20003127 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,909 +chr20 20003128 . G . . END=20003128 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,929 +chr20 20003129 . G . . END=20003136 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,913 +chr20 20003137 . G . . END=20003138 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 20003139 . A . . END=20003139 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +chr20 20003140 . G . . END=20003140 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,998 +chr20 20003141 . C . . END=20003158 GT:DP:GQ:MIN_DP:PL 0/0:31:84:28:0,84,913 +chr20 20003159 . G . . END=20003159 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,849 +chr20 20003160 . A . . END=20003161 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,988 +chr20 20003162 . G . . END=20003163 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20003164 . G . . END=20003182 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,948 +chr20 20003183 . A . . END=20003186 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 20003187 . G . . END=20003188 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20003189 . A . . END=20003192 GT:DP:GQ:MIN_DP:PL 0/0:30:75:28:0,75,1125 +chr20 20003193 . T . . END=20003193 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,849 +chr20 20003194 . G . . END=20003194 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chr20 20003195 . G . . END=20003195 GT:DP:GQ:MIN_DP:PL 0/0:26:29:26:0,29,765 +chr20 20003196 . G . . END=20003209 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,849 +chr20 20003210 . C . . END=20003218 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +chr20 20003219 . G . . END=20003219 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1043 +chr20 20003220 . T . . END=20003222 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chr20 20003223 . C . . END=20003223 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,973 +chr20 20003224 . T . . END=20003224 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,994 +chr20 20003225 . G . . END=20003241 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 20003242 . A . . END=20003242 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1009 +chr20 20003243 . T . . END=20003243 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 20003244 . G . . END=20003244 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,953 +chr20 20003245 . T . . END=20003248 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20003249 . C . . END=20003257 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +chr20 20003258 . A . . END=20003268 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +chr20 20003269 . A . . END=20003269 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20003270 . C . . END=20003273 GT:DP:GQ:MIN_DP:PL 0/0:30:78:28:0,78,1170 +chr20 20003274 . T . . END=20003274 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20003275 . G . . END=20003275 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,959 +chr20 20003276 . C . . END=20003277 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20003278 . T . . END=20003280 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +chr20 20003281 . A . . END=20003281 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,963 +chr20 20003282 . C . . END=20003283 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 20003284 . T . . END=20003288 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 20003289 . C . . END=20003289 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20003290 . C . . END=20003290 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,973 +chr20 20003291 . C . . END=20003292 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chr20 20003293 . A . . END=20003293 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20003294 . C . . END=20003294 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chr20 20003295 . G . . END=20003298 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,962 +chr20 20003299 . G . . END=20003299 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,988 +chr20 20003300 . C . . END=20003327 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1028 +chr20 20003328 . A . . END=20003330 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20003331 . G . . END=20003336 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 20003337 . G . . END=20003340 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,998 +chr20 20003341 . A . . END=20003341 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1009 +chr20 20003342 . A . . END=20003347 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +chr20 20003348 . G . . END=20003350 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +chr20 20003351 . G . . END=20003382 GT:DP:GQ:MIN_DP:PL 0/0:24:66:23:0,66,790 +chr20 20003383 . G . . END=20003383 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,810 +chr20 20003384 . G . . END=20003386 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +chr20 20003387 . G . . END=20003398 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +chr20 20003399 . A . . END=20003403 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,889 +chr20 20003404 . A . . END=20003414 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,1080 +chr20 20003415 . T . . END=20003415 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,819 +chr20 20003416 . A . . END=20003418 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20003419 . A . . END=20003419 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,805 +chr20 20003420 . A . . END=20003420 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20003421 . T . . END=20003423 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,805 +chr20 20003424 . A . . END=20003424 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 +chr20 20003425 . T . . END=20003425 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,794 +chr20 20003426 . T . . END=20003432 GT:DP:GQ:MIN_DP:PL 0/0:26:60:22:0,60,900 +chr20 20003433 . G . . END=20003435 GT:DP:GQ:MIN_DP:PL 0/0:22:57:19:0,57,620 +chr20 20003436 . G . . END=20003447 GT:DP:GQ:MIN_DP:PL 0/0:23:60:21:0,60,724 +chr20 20003448 . C . . END=20003449 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,814 +chr20 20003450 . T . . END=20003450 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chr20 20003451 . G . . END=20003451 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,745 +chr20 20003452 . A . . END=20003459 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chr20 20003460 . A . . END=20003462 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,783 +chr20 20003463 . T . . END=20003465 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chr20 20003466 . A . . END=20003471 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,824 +chr20 20003472 . C . . END=20003472 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,734 +chr20 20003473 . G . . END=20003493 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,754 +chr20 20003494 . T . . END=20003494 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,804 +chr20 20003495 . G . . END=20003500 GT:DP:GQ:MIN_DP:PL 0/0:26:75:25:0,75,809 +chr20 20003501 . C . . END=20003502 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,878 +chr20 20003503 . G . . END=20003503 GT:DP:GQ:MIN_DP:PL 0/0:25:75:25:0,75,839 +chr20 20003504 . C . . END=20003504 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,825 +chr20 20003505 . C . . END=20003506 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,867 +chr20 20003507 . G . . END=20003510 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,803 +chr20 20003511 . G . . END=20003513 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20003514 . A . . END=20003514 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20003515 . G . . END=20003525 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,978 +chr20 20003526 . T . . END=20003526 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,904 +chr20 20003527 . C . . END=20003528 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +chr20 20003529 . T . . END=20003533 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chr20 20003534 . C . . END=20003534 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +chr20 20003535 . T . . END=20003537 GT:DP:GQ:MIN_DP:PL 0/0:29:66:27:0,66,990 +chr20 20003538 . A . . END=20003538 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 +chr20 20003539 . A . . END=20003546 GT:DP:GQ:MIN_DP:PL 0/0:28:60:26:0,60,900 +chr20 20003547 . A . . END=20003555 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 20003556 . A . . END=20003560 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,978 +chr20 20003561 . T . . END=20003563 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20003564 . T . . END=20003564 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,998 +chr20 20003565 . A . . END=20003565 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chr20 20003566 . A . . END=20003567 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 20003568 . A . . END=20003575 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 20003576 . G . . END=20003578 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +chr20 20003579 . G . . END=20003579 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,908 +chr20 20003580 . G . . END=20003589 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +chr20 20003590 . G . . END=20003592 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 20003593 . A . . END=20003594 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1013 +chr20 20003595 . T . . END=20003595 GT:DP:GQ:MIN_DP:PL 0/0:32:36:32:0,36,933 +chr20 20003596 . T . . END=20003597 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +chr20 20003598 . T . . END=20003599 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +chr20 20003600 . T . . END=20003607 GT:DP:GQ:MIN_DP:PL 0/0:32:75:30:0,75,1125 +chr20 20003608 . T . . END=20003610 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,1053 +chr20 20003611 . G . . END=20003611 GT:DP:GQ:MIN_DP:PL 0/0:29:38:29:0,38,839 +chr20 20003612 . T . . END=20003613 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chr20 20003614 . G . . END=20003614 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,921 +chr20 20003615 . C . . END=20003616 GT:DP:GQ:MIN_DP:PL 0/0:32:82:29:0,82,958 +chr20 20003617 . T . . END=20003619 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,983 +chr20 20003620 . G . . END=20003620 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,922 +chr20 20003621 . C . . END=20003621 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1072 +chr20 20003622 . T . . END=20003622 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20003623 . G . . END=20003625 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,996 +chr20 20003626 . A . . END=20003630 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1152 +chr20 20003631 . C . . END=20003631 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1072 +chr20 20003632 . T . . END=20003653 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1081 +chr20 20003654 . C . . END=20003654 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +chr20 20003655 . A . . END=20003655 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1038 +chr20 20003656 . C . . END=20003656 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20003657 . C . . END=20003658 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +chr20 20003659 . C . . END=20003660 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +chr20 20003661 . G . . END=20003661 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,982 +chr20 20003662 . G . . END=20003662 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1161 +chr20 20003663 . G . . END=20003664 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1070 +chr20 20003665 . C . . END=20003665 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1042 +chr20 20003666 . A . . END=20003673 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1040 +chr20 20003674 . G . . END=20003674 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1101 +chr20 20003675 . A . . END=20003675 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1142 +chr20 20003676 . A . . END=20003677 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chr20 20003678 . T . . END=20003678 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1101 +chr20 20003679 . A . . END=20003684 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1350 +chr20 20003685 . T . . END=20003685 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,1068 +chr20 20003686 . G . . END=20003687 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +chr20 20003688 . T . . END=20003688 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +chr20 20003689 . G . . END=20003689 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1091 +chr20 20003690 . A . . END=20003695 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 20003696 . T . . END=20003697 GT:DP:GQ:MIN_DP:PL 0/0:34:85:33:0,85,1032 +chr20 20003698 . C . . END=20003698 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1048 +chr20 20003699 . A . . END=20003706 GT:DP:GQ:MIN_DP:PL 0/0:32:82:31:0,82,1023 +chr20 20003707 . T . . END=20003712 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +chr20 20003713 . T . . END=20003713 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,993 +chr20 20003714 . T . . END=20003720 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 20003721 . T . . END=20003721 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,1013 +chr20 20003722 . C . . END=20003733 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,1037 +chr20 20003734 . A . . END=20003737 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20003738 . T . . END=20003738 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1132 +chr20 20003739 . A . . END=20003743 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +chr20 20003744 . G . . END=20003744 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1125 +chr20 20003745 . G . . END=20003752 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +chr20 20003753 . A . . END=20003765 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +chr20 20003766 . T . . END=20003766 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1103 +chr20 20003767 . G . . END=20003767 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +chr20 20003768 . C . . END=20003771 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20003772 . C . . END=20003785 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1052 +chr20 20003786 . G . . END=20003786 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1023 +chr20 20003787 . T . . END=20003789 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1013 +chr20 20003790 . C . . END=20003790 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1077 +chr20 20003791 . G . . END=20003791 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1018 +chr20 20003792 . T . . END=20003793 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1087 +chr20 20003794 . C . . END=20003804 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1052 +chr20 20003805 . G . . END=20003805 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1107 +chr20 20003806 . C . . END=20003817 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,1027 +chr20 20003818 . T . . END=20003818 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1048 +chr20 20003819 . C . . END=20003820 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1103 +chr20 20003821 . T . . END=20003821 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1053 +chr20 20003822 . C . . END=20003822 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +chr20 20003823 . T . . END=20003824 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,1043 +chr20 20003825 . T . . END=20003825 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +chr20 20003826 . A . . END=20003826 GT:DP:GQ:MIN_DP:PL 0/0:32:57:32:0,57,1004 +chr20 20003827 . A . . END=20003830 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 20003831 . A . . END=20003833 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20003834 . T . . END=20003834 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1128 +chr20 20003835 . G . . END=20003835 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20003836 . A . . END=20003836 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1082 +chr20 20003837 . A . . END=20003839 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1117 +chr20 20003840 . G . . END=20003840 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1058 +chr20 20003841 . A . . END=20003844 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1117 +chr20 20003845 . A . . END=20003845 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1088 +chr20 20003846 . G . . END=20003847 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1047 +chr20 20003848 . G . . END=20003854 GT:DP:GQ:MIN_DP:PL 0/0:36:91:33:0,91,1107 +chr20 20003855 . T . . END=20003858 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +chr20 20003859 . T . . END=20003859 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1207 +chr20 20003860 . A . . END=20003860 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +chr20 20003861 . A . . END=20003861 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1107 +chr20 20003862 . C . . END=20003873 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1142 +chr20 20003874 . C . . END=20003874 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1103 +chr20 20003875 . C . . END=20003875 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1001 +chr20 20003876 . G . . END=20003876 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1097 +chr20 20003877 . T . . END=20003878 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,96,1440 +chr20 20003879 . A . . END=20003880 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +chr20 20003881 . G . . END=20003881 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1092 +chr20 20003882 . C . . END=20003895 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +chr20 20003896 . G . . END=20003896 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 20003897 . T . . END=20003907 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +chr20 20003908 . C . . END=20003909 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20003910 . C . . END=20003910 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1113 +chr20 20003911 . C . . END=20003913 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20003914 . C . . END=20003916 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +chr20 20003917 . G . . END=20003942 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1177 +chr20 20003943 . C . . END=20003943 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1221 +chr20 20003944 . A . . END=20003962 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1050 +chr20 20003963 . A . . END=20003963 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1167 +chr20 20003964 . C . . END=20003966 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +chr20 20003967 . T . . END=20003967 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1177 +chr20 20003968 . G . . END=20003981 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,102,1142 +chr20 20003982 . G . . END=20003983 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1230 +chr20 20003984 . C . . END=20004001 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,108,1620 +chr20 20004002 . G . . END=20004002 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1311 +chr20 20004003 . T . . END=20004017 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,108,1211 +chr20 20004018 . T . . END=20004018 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1266 +chr20 20004019 . T . . END=20004078 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,103,1236 +chr20 20004079 . T . . END=20004079 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1187 +chr20 20004080 . T . . END=20004114 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,102,1261 +chr20 20004115 . T . . END=20004115 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1305 +chr20 20004116 . A . . END=20004129 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1311 +chr20 20004130 . G . . END=20004138 GT:DP:GQ:MIN_DP:PL 0/0:38:93:35:0,93,1395 +chr20 20004139 . T . . END=20004141 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +chr20 20004142 . A . . END=20004142 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1082 +chr20 20004143 . A . . END=20004143 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20004144 . A . . END=20004144 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1107 +chr20 20004145 . A . . END=20004146 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +chr20 20004147 . C . . END=20004147 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1082 +chr20 20004148 . C . . END=20004150 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1091 +chr20 20004151 . A . . END=20004151 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chr20 20004152 . A . . END=20004153 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chr20 20004154 . A . . END=20004154 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 20004155 . C . . END=20004155 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1022 +chr20 20004156 . G . . END=20004159 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +chr20 20004160 . T . . END=20004160 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1122 +chr20 20004161 . A . . END=20004175 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1162 +chr20 20004176 . A . . END=20004184 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +chr20 20004185 . A . . END=20004189 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +chr20 20004190 . G . . END=20004213 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,873 +chr20 20004214 . G . . END=20004216 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chr20 20004217 . A . . END=20004220 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chr20 20004221 . C . . END=20004225 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 20004226 . C . . END=20004228 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +chr20 20004229 . T . . END=20004232 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20004233 . A . . END=20004233 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,929 +chr20 20004234 . G . . END=20004263 GT:DP:GQ:MIN_DP:PL 0/0:28:72:25:0,72,819 +chr20 20004264 . G . . END=20004264 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,825 +chr20 20004265 . A . . END=20004265 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chr20 20004266 . G . . END=20004269 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,66,990 +chr20 20004270 . A . . END=20004305 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,1080 +chr20 20004306 . A . . END=20004306 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,924 +chr20 20004307 . C . . END=20004309 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,908 +chr20 20004310 . A . . END=20004310 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,959 +chr20 20004311 . A . . END=20004319 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +chr20 20004320 . A . . END=20004320 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1009 +chr20 20004321 . A . . END=20004323 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20004324 . A . . END=20004324 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1009 +chr20 20004325 . G . . END=20004326 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 20004327 . C . . END=20004327 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,938 +chr20 20004328 . G . . END=20004330 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1023 +chr20 20004331 . C . . END=20004331 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,947 +chr20 20004332 . A . . END=20004333 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1023 +chr20 20004334 . G . . END=20004335 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +chr20 20004336 . T . . END=20004344 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 20004345 . C . . END=20004345 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chr20 20004346 . C . . END=20004349 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,1002 +chr20 20004350 . A . . END=20004350 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,999 +chr20 20004351 . A . . END=20004363 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1082 +chr20 20004364 . G . . END=20004364 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1097 +chr20 20004365 . G . . END=20004380 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,1002 +chr20 20004381 . G . . END=20004381 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chr20 20004382 . A . . END=20004385 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,1023 +chr20 20004386 . C . . END=20004386 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,982 +chr20 20004387 . C . . END=20004391 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +chr20 20004392 . A . . END=20004392 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,1013 +chr20 20004393 . G . . END=20004400 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1017 +chr20 20004401 . G . . END=20004401 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chr20 20004402 . C . . END=20004402 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,972 +chr20 20004403 . G . . END=20004407 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1087 +chr20 20004408 . T . . END=20004411 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1042 +chr20 20004412 . A . . END=20004420 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +chr20 20004421 . A . . END=20004423 GT:DP:GQ:MIN_DP:PL 0/0:30:76:29:0,76,964 +chr20 20004424 . T . . END=20004424 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,894 +chr20 20004425 . G . . END=20004429 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 20004430 . C . . END=20004430 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20004431 . A . . END=20004431 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,874 +chr20 20004432 . C . . END=20004433 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,889 +chr20 20004434 . G . . END=20004439 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,843 +chr20 20004440 . T . . END=20004440 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20004441 . A . . END=20004445 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +chr20 20004446 . G . . END=20004452 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,945 +chr20 20004453 . A . . END=20004454 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +chr20 20004455 . A . . END=20004456 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,990 +chr20 20004457 . C . . END=20004457 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,849 +chr20 20004458 . A . . END=20004469 GT:DP:GQ:MIN_DP:PL 0/0:25:63:23:0,63,945 +chr20 20004470 . C . . END=20004470 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,774 +chr20 20004471 . A . . END=20004479 GT:DP:GQ:MIN_DP:PL 0/0:27:66:25:0,66,990 +chr20 20004480 . A . . END=20004489 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 20004490 . A . . END=20004490 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,904 +chr20 20004491 . A . . END=20004493 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chr20 20004494 . A . . END=20004494 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +chr20 20004495 . G . . END=20004518 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,814 +chr20 20004519 . A . . END=20004522 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chr20 20004523 . C . . END=20004536 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +chr20 20004537 . C . . END=20004537 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,880 +chr20 20004538 . T . . END=20004538 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chr20 20004539 . C . . END=20004539 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,824 +chr20 20004540 . A . . END=20004540 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,873 +chr20 20004541 . A . . END=20004541 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,869 +chr20 20004542 . G . . END=20004547 GT:DP:GQ:MIN_DP:PL 0/0:27:69:25:0,69,1035 +chr20 20004548 . G . . END=20004552 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,894 +chr20 20004553 . T . . END=20004555 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,929 +chr20 20004556 . T . . END=20004556 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,953 +chr20 20004557 . T . . END=20004559 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +chr20 20004560 . A . . END=20004567 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +chr20 20004568 . C . . END=20004571 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,962 +chr20 20004572 . T . . END=20004575 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1077 +chr20 20004576 . C . . END=20004576 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1076 +chr20 20004577 . T . . END=20004577 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1117 +chr20 20004578 . C . . END=20004578 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1006 +chr20 20004579 . C . . END=20004579 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1027 +chr20 20004580 . A . . END=20004582 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1107 +chr20 20004583 . A . . END=20004583 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1098 +chr20 20004584 . T . . END=20004584 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1117 +chr20 20004585 . C . . END=20004585 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1031 +chr20 20004586 . A . . END=20004587 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,1177 +chr20 20004588 . A . . END=20004588 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1172 +chr20 20004589 . A . . END=20004590 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1211 +chr20 20004591 . T . . END=20004591 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1172 +chr20 20004592 . G . . END=20004605 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1186 +chr20 20004606 . C . . END=20004606 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1103 +chr20 20004607 . A . . END=20004612 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +chr20 20004613 . T . . END=20004615 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +chr20 20004616 . C . . END=20004622 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1485 +chr20 20004623 . A . . END=20004629 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chr20 20004630 . G . . END=20004630 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1117 +chr20 20004631 . C . . END=20004631 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chr20 20004632 . T . . END=20004634 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1127 +chr20 20004635 . G . . END=20004641 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1048 +chr20 20004642 . A . . END=20004646 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +chr20 20004647 . G . . END=20004647 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,1033 +chr20 20004648 . G . . END=20004655 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +chr20 20004656 . A . . END=20004674 GT:DP:GQ:MIN_DP:PL 0/0:31:72:30:0,72,1080 +chr20 20004675 . T . . END=20004675 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chr20 20004676 . A . . END=20004682 GT:DP:GQ:MIN_DP:PL 0/0:32:71:31:0,71,1013 +chr20 20004683 . A . . END=20004691 GT:DP:GQ:MIN_DP:PL 0/0:31:60:30:0,60,900 +chr20 20004692 . G . . END=20004693 GT:DP:GQ:MIN_DP:PL 0/0:30:57:29:0,57,855 +chr20 20004694 . A . . END=20004694 GT:DP:GQ:MIN_DP:PL 0/0:30:54:30:0,54,810 +chr20 20004695 . T . . END=20004695 GT:DP:GQ:MIN_DP:PL 0/0:30:48:30:0,48,720 +chr20 20004696 . G . . END=20004696 GT:DP:GQ:MIN_DP:PL 0/0:30:51:30:0,51,765 +chr20 20004697 . T . . END=20004697 GT:DP:GQ:MIN_DP:PL 0/0:31:42:31:0,42,630 +chr20 20004698 . A . . END=20004698 GT:DP:GQ:MIN_DP:PL 0/0:31:34:31:0,34,939 +chr20 20004699 . A . . END=20004700 GT:DP:GQ:MIN_DP:PL 0/0:30:45:29:0,45,675 +chr20 20004701 . CTT C,CT, 102.77 . BaseQRankSum=0.107;ClippingRankSum=0.107;DP=29;ExcessHet=3.0103;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00;MQRankSum=1.826;RAW_MQ=102400.00;ReadPosRankSum=1.396 GT:AD:DP:GQ:PL:SB 1/2:2,4,6,0:12:20:140,60,222,20,0,25,115,97,43,138:1,1,0,10 +chr20 20004704 . T . . END=20004704 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,585 +chr20 20004705 . T . . END=20004705 GT:DP:GQ:MIN_DP:PL 0/0:27:36:27:0,36,540 +chr20 20004706 . T . . END=20004715 GT:DP:GQ:MIN_DP:PL 0/0:25:39:25:0,39,585 +chr20 20004716 . T . . END=20004716 GT:DP:GQ:MIN_DP:PL 0/0:25:36:25:0,36,540 +chr20 20004717 . T . . END=20004720 GT:DP:GQ:MIN_DP:PL 0/0:25:39:24:0,39,585 +chr20 20004721 . T . . END=20004723 GT:DP:GQ:MIN_DP:PL 0/0:24:42:24:0,42,630 +chr20 20004724 . T . . END=20004724 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chr20 20004725 . G . . END=20004735 GT:DP:GQ:MIN_DP:PL 0/0:16:42:15:0,42,630 +chr20 20004736 . T . . END=20004737 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chr20 20004738 . A . . END=20004747 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chr20 20004748 . A . . END=20004749 GT:DP:GQ:MIN_DP:PL 0/0:15:39:13:0,39,442 +chr20 20004750 . G . . END=20004755 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,477 +chr20 20004756 . A . . END=20004756 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,522 +chr20 20004757 . T . . END=20004761 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 +chr20 20004762 . T . . END=20004763 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chr20 20004764 . C . . END=20004764 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chr20 20004765 . A . . END=20004768 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chr20 20004769 . G . . END=20004772 GT:DP:GQ:MIN_DP:PL 0/0:18:48:16:0,48,536 +chr20 20004773 . T . . END=20004774 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,765 +chr20 20004775 . T . . END=20004777 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 20004778 . C . . END=20004778 GT:DP:GQ:MIN_DP:PL 0/0:19:43:19:0,43,591 +chr20 20004779 . G . . END=20004779 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,571 +chr20 20004780 . G . . END=20004780 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,616 +chr20 20004781 . C . . END=20004781 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,661 +chr20 20004782 . T . . END=20004782 GT:DP:GQ:MIN_DP:PL 0/0:20:35:20:0,35,605 +chr20 20004783 . C . . END=20004784 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,665 +chr20 20004785 . C . . END=20004787 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,640 +chr20 20004788 . C . . END=20004789 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,665 +chr20 20004790 . G . . END=20004793 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 20004794 . C . . END=20004794 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,646 +chr20 20004795 . A . . END=20004796 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 20004797 . C . . END=20004797 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,620 +chr20 20004798 . C . . END=20004798 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chr20 20004799 . T . . END=20004799 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,646 +chr20 20004800 . C . . END=20004800 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,640 +chr20 20004801 . C . . END=20004817 GT:DP:GQ:MIN_DP:PL 0/0:22:60:20:0,60,685 +chr20 20004818 . C . . END=20004819 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +chr20 20004820 . T . . END=20004820 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,844 +chr20 20004821 . C . . END=20004842 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,824 +chr20 20004843 . C . . END=20004848 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,878 +chr20 20004849 . C . . END=20004849 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,859 +chr20 20004850 . T . . END=20004850 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,898 +chr20 20004851 . A . . END=20004851 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,879 +chr20 20004852 . C . . END=20004854 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,898 +chr20 20004855 . G . . END=20004856 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,894 +chr20 20004857 . G . . END=20004861 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +chr20 20004862 . C . . END=20004876 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +chr20 20004877 . A . . END=20004877 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,849 +chr20 20004878 . A . . END=20004901 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,874 +chr20 20004902 . T . . END=20004902 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chr20 20004903 . G . . END=20004903 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chr20 20004904 . A . . END=20004906 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chr20 20004907 . T . . END=20004908 GT:DP:GQ:MIN_DP:PL 0/0:30:73:29:0,73,899 +chr20 20004909 . T . . END=20004909 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,958 +chr20 20004910 . C . . END=20004910 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chr20 20004911 . A . . END=20004913 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +chr20 20004914 . A . . END=20004916 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chr20 20004917 . T . . END=20004930 GT:DP:GQ:MIN_DP:PL 0/0:29:78:26:0,78,874 +chr20 20004931 . C . . END=20004937 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,909 +chr20 20004938 . T . . END=20004953 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,1023 +chr20 20004954 . T . . END=20004960 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chr20 20004961 . C . . END=20004971 GT:DP:GQ:MIN_DP:PL 0/0:29:75:27:0,75,1125 +chr20 20004972 . C . . END=20004979 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,929 +chr20 20004980 . C . . END=20004982 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1013 +chr20 20004983 . A . . END=20004984 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,998 +chr20 20004985 . A . . END=20005011 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1058