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The VCF header line
"##Mutect Version=x.y"
causes problems for some VCF readers. Each header line is required to be a key-value pair and a space character is not expected in the key. (The VCF specification is not clear on this matter, but I've never encountered a space character in a VCF header key before.)
Making VCF files that are easily readable by downstream tools should be in the interest of Mutect2.
Steps to reproduce
Create a VCF file using Mutect2 and look at the header.
Expected behavior
output
"##MutectVersion=2.1"
Actual behavior
output
"##Mutect Version=2.1"
The text was updated successfully, but these errors were encountered:
Bug Report
Affected tool(s) or class(es)
Mutect2
Affected version(s)
Description
The VCF header line
"##Mutect Version=x.y"
causes problems for some VCF readers. Each header line is required to be a key-value pair and a space character is not expected in the key. (The VCF specification is not clear on this matter, but I've never encountered a space character in a VCF header key before.)
Making VCF files that are easily readable by downstream tools should be in the interest of Mutect2.
Steps to reproduce
Create a VCF file using Mutect2 and look at the header.
Expected behavior
output
"##MutectVersion=2.1"
Actual behavior
output
"##Mutect Version=2.1"
The text was updated successfully, but these errors were encountered: