Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Change "##Mutect Version=x.y" to "##MutectVersion=x.y" #5183

Closed
2 tasks done
rasmushenningsson opened this issue Sep 13, 2018 · 1 comment
Closed
2 tasks done

Change "##Mutect Version=x.y" to "##MutectVersion=x.y" #5183

rasmushenningsson opened this issue Sep 13, 2018 · 1 comment
Assignees
Labels

Comments

@rasmushenningsson
Copy link

rasmushenningsson commented Sep 13, 2018

Bug Report

Affected tool(s) or class(es)

Mutect2

Affected version(s)

  • Latest public release version [2.1]
  • Latest master branch as of [2018-09-13]

Description

The VCF header line
"##Mutect Version=x.y"
causes problems for some VCF readers. Each header line is required to be a key-value pair and a space character is not expected in the key. (The VCF specification is not clear on this matter, but I've never encountered a space character in a VCF header key before.)
Making VCF files that are easily readable by downstream tools should be in the interest of Mutect2.

Steps to reproduce

Create a VCF file using Mutect2 and look at the header.

Expected behavior

output
"##MutectVersion=2.1"

Actual behavior

output
"##Mutect Version=2.1"

@davidbenjamin
Copy link
Contributor

Thanks for spotting this, @rasmushenningsson!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

2 participants