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We've been implementing new features but the coverage in the sv.utils package has been non-pretty.
Some of the classes like ExternalCommandlineProgramModule.java and GATKSVVCFConstants.java are OK (ExternalCommandlineProgramModule exists for historical reason, when we had SGA as the assembler; GATKSVVCFConstants is mostly holding String literals), but other classes are doing actual work and have low coverage.
We should test them, not via integration tests only, but also unit tests.
The text was updated successfully, but these errors were encountered:
We've been implementing new features but the coverage in the
sv.utils
package has been non-pretty.Some of the classes like
ExternalCommandlineProgramModule.java
andGATKSVVCFConstants.java
are OK (ExternalCommandlineProgramModule
exists for historical reason, when we had SGA as the assembler;GATKSVVCFConstants
is mostly holding String literals), but other classes are doing actual work and have low coverage.We should test them, not via integration tests only, but also unit tests.
The text was updated successfully, but these errors were encountered: