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Use Spark to speed up the MarkDuplicates and SortSam steps in the single-sample pipeline #3706

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droazen opened this issue Oct 17, 2017 · 1 comment · Fixed by #4656
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Use Spark to speed up the MarkDuplicates and SortSam steps in the single-sample pipeline #3706

droazen opened this issue Oct 17, 2017 · 1 comment · Fixed by #4656
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@lbergelson @jamesemery
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performance PRIORITY_HIGH Spark
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Engine-2Q2018

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droazen commented Oct 17, 2017

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@droazen droazen added this to the Engine-4.0 milestone Oct 17, 2017
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droazen commented Oct 17, 2017

Depends on #3705

This was referenced Oct 17, 2017
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@droazen droazen modified the milestones: Engine-4.0, Engine-4.1 Jan 16, 2018
@droazen droazen modified the milestones: Engine-4.1, Engine-1Q2018 Feb 5, 2018
@jamesemery jamesemery mentioned this issue Feb 9, 2018
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@droazen droazen modified the milestones: Engine-1Q2018, Engine-2Q2018 Apr 6, 2018
This was referenced Apr 12, 2018
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performance PRIORITY_HIGH Spark
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MarkDuplicatesSpark improvements checkpoint broadinstitute/gatk
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@droazen @lbergelson @jamesemery