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Update MarkDuplicatesGATK/MarkDuplicatesSpark to incorporate recent Picard development #3705

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droazen opened this issue Oct 17, 2017 · 1 comment
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Update MarkDuplicatesGATK/MarkDuplicatesSpark to incorporate recent Picard development #3705

droazen opened this issue Oct 17, 2017 · 1 comment
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@lbergelson @jamesemery
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Picard PRIORITY_HIGH Spark tools
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Engine-2Q2018

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@droazen
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droazen commented Oct 17, 2017

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@droazen droazen added this to the Engine-4.0 milestone Oct 17, 2017
@droazen droazen mentioned this issue Oct 17, 2017
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@droazen droazen mentioned this issue Oct 17, 2017
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@droazen droazen changed the title Update GATK4 MarkDuplicates/MarkDuplicatesSpark to incorporate recent Picard development Update MarkDuplicatesGATK/MarkDuplicatesSpark to incorporate recent Picard development Oct 17, 2017
@droazen droazen modified the milestones: Engine-4.0, Engine-4.1 Jan 16, 2018
@droazen droazen modified the milestones: Engine-4.1, Engine-1Q2018 Feb 5, 2018
@droazen droazen modified the milestones: Engine-1Q2018, Engine-2Q2018 Apr 6, 2018
@jamesemery jamesemery mentioned this issue Apr 18, 2018
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@jamesemery jamesemery mentioned this issue Sep 7, 2018
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This task has been completed with recent updates to the tie-breaking code, to continue tracking MarkDuplicatesSpark tie out see this branch: #4675

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Picard PRIORITY_HIGH Spark tools
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Engine-2Q2018
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@droazen @lbergelson @jamesemery