diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf index fb6374fbf46..3a0742ffd7d 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf @@ -25,255 +25,255 @@ ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 -20 10000117 . C T 926.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;DP=66;ExcessHet=3.0103;FS=11.007;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.913;QD=14.48;ReadPosRankSum=-0.223;SOR=1.538 GT:AD:DD:DF:DP:GQ:PL 0/1:36,28:36,28:0.5607,0.4393:64:99:934,0,1248 -20 10000211 . C T 962.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;DP=54;ExcessHet=3.0103;FS=5.587;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.057;QD=18.16;ReadPosRankSum=0.703;SOR=0.944 GT:AD:DD:DF:DP:GQ:PL 0/1:26,27:26,27:0.4909,0.5091:53:99:970,0,906 -20 10000439 . T G 2819.06 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.86;QD=25.36;SOR=1.236 GT:AD:DD:DF:DP:GQ:PL 1/1:0,80:0,79.99:0.0122,0.9878:80:99:2833,240,0 -20 10000598 . T A 1956.06 . AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.45;QD=28.73;SOR=1.225 GT:AD:DD:DF:DP:GQ:PL 1/1:0,49:0,49:0.0196,0.9804:49:99:1970,147,0 -20 10000694 . G A 1029.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;DP=87;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=48.86;MQRankSum=-5.114;QD=12.56;ReadPosRankSum=0.657;SOR=0.566 GT:AD:DD:DF:DP:GQ:PL 0/1:45,37:63.36,0.41:0.9786,0.0214:82:99:1037,0,1601 -20 10000758 . T A 3853.06 . AC=2;AF=1.00;AN=2;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.51;QD=30.97;SOR=0.802 GT:AD:DD:DF:DP:GQ:PL 1/1:0,95:0,92.83:0.0106,0.9894:95:99:3867,286,0 -20 10001019 . T G 671.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;DP=75;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-7.498;QD=10.33;ReadPosRankSum=-0.925;SOR=0.665 GT:AD:DD:DF:DP:GQ:PL 0/1:39,26:40.1,24.75:0.6148,0.3852:65:99:679,0,1426 -20 10001298 . T A 2932.06 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.93;QD=27.24;SOR=0.963 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,73:0.0133,0.9867:73:99:2946,220,0 -20 10001436 . A AAGGCT 2325.03 . AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.22;QD=28.20;SOR=3.014 GT:AD:DD:DF:DP:GQ:PL 1/1:0,52:0.01,52.26:0.0186,0.9814:52:99:2339,156,0 -20 10001474 . C T 2655.06 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.87;QD=25.00;SOR=1.516 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,73:0.0133,0.9867:73:99:2669,219,0 -20 10001617 . C A 1752.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DP=105;ExcessHet=3.0103;FS=13.163;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=1.373;QD=17.02;ReadPosRankSum=-0.280;SOR=1.346 GT:AD:DD:DF:DP:GQ:PL 0/1:52,51:51.82,50.16:0.508,0.492:103:99:1760,0,1781 -20 10001628 . G A 3913.06 . AC=2;AF=1.00;AN=2;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.19;QD=29.56;SOR=1.053 GT:AD:DD:DF:DP:GQ:PL 1/1:0,95:0,93.97:0.0104,0.9896:95:99:3927,285,0 -20 10001661 . T C 3621.06 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.13;QD=30.62;SOR=1.112 GT:AD:DD:DF:DP:GQ:PL 1/1:0,83:0,81.97:0.0119,0.9881:83:99:3635,249,0 -20 10001670 . T G 3688.06 . AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.60;QD=28.17;SOR=0.897 GT:AD:DD:DF:DP:GQ:PL 1/1:0,84:0,83.98:0.0116,0.9884:84:99:3702,253,0 -20 10002058 . T G 2978.06 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.931;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQRankSum=3.068;QD=26.80;ReadPosRankSum=0.624;SOR=0.776 GT:AD:DD:DF:DP:GQ:PL 1/1:1,74:0,73.98:0.0132,0.9868:75:99:2992,216,0 -20 10002099 . C T 1215.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=68;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-0.850;QD=18.70;ReadPosRankSum=0.173;SOR=0.375 GT:AD:DD:DF:DP:GQ:PL 0/1:27,38:27,35:0.4375,0.5625:65:99:1223,0,844 -20 10002138 . C G 2458.06 . AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.64;QD=26.00;SOR=0.765 GT:AD:DD:DF:DP:GQ:PL 1/1:0,56:0,54:0.0179,0.9821:56:99:2472,169,0 -20 10002142 . G C 2422.06 . AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.08;QD=30.02;SOR=0.804 GT:AD:DD:DF:DP:GQ:PL 1/1:0,55:0,53:0.0182,0.9818:55:99:2436,166,0 -20 10002458 . G GTTT 2154.96 . AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.67;QD=31.98;SOR=2.303 GT:AD:DD:DF:DP:GQ:PL 1/1:0,56:0.02,50.11:0.0196,0.9804:56:99:2090,167,0 -20 10002470 . C T 2537.06 . AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.92;QD=27.51;SOR=0.859 GT:AD:DD:DF:DP:GQ:PL 1/1:0,63:0.01,59.77:0.0163,0.9837:63:99:2551,189,0 -20 10002625 . G T 2680.06 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.08;QD=29.11;SOR=1.127 GT:AD:DD:DF:DP:GQ:PL 1/1:0,64:0,64:0.0152,0.9848:64:99:2694,193,0 -20 10003021 . C T 2398.06 . AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.04;QD=28.08;SOR=1.071 GT:AD:DD:DF:DP:GQ:PL 1/1:0,60:0,60:0.0161,0.9839:60:99:2412,181,0 -20 10003358 . A C 1475.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;DP=91;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.011;QD=16.58;ReadPosRankSum=-1.355;SOR=0.572 GT:AD:DD:DF:DP:GQ:PL 0/1:45,44:44.9,44.1:0.5044,0.4956:89:99:1483,0,1477 -20 10003651 . T C 3635.06 . AC=2;AF=1.00;AN=2;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.24;QD=23.23;SOR=1.511 GT:AD:DD:DF:DP:GQ:PL 1/1:0,93:0,92.99:0.0105,0.9895:93:99:3649,279,0 -20 10003692 . A G 2624.06 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.48;QD=29.03;SOR=1.352 GT:AD:DD:DF:DP:GQ:PL 1/1:0,68:0,68:0.0143,0.9857:68:99:2638,205,0 -20 10003832 . G A 2720.06 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.82;QD=30.67;SOR=1.473 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,66:0.0147,0.9853:66:99:2734,199,0 -20 10004094 . A C 1840.06 . AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.62;QD=34.72;SOR=1.524 GT:AD:DD:DF:DP:GQ:PL 1/1:0,53:0.01,50.97:0.019,0.981:53:99:1854,157,0 -20 10004147 . A G 1852.06 . AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.19;QD=26.61;SOR=1.136 GT:AD:DD:DF:DP:GQ:PL 1/1:0,52:0,49.99:0.0193,0.9807:52:99:1866,156,0 -20 10004193 . G T 937.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;DP=54;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=3.385;QD=18.39;ReadPosRankSum=1.724;SOR=0.941 GT:AD:DD:DF:DP:GQ:PL 0/1:23,28:20.98,25.86:0.45,0.55:51:99:945,0,776 -20 10004222 . C CA 42.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=69;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-2.220;QD=0.95;ReadPosRankSum=0.198;SOR=0.932 GT:AD:DD:DF:DP:GQ:PL 0/1:35,10:35.85,8.36:0.7975,0.2025:45:50:50,0,923 -20 10004223 . A AG 77.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=69;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=2.260;QD=1.62;ReadPosRankSum=0.060;SOR=0.504 GT:AD:DD:DF:DP:GQ:PL 0/1:36,12:35.14,11.16:0.7483,0.2517:48:85:85,0,983 -20 10004351 . C G 2770.06 . AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.05;QD=29.20;SOR=0.874 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0,69:0.0141,0.9859:70:99:2784,211,0 -20 10004389 . T G 2509.06 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.62;QD=28.55;SOR=1.143 GT:AD:DD:DF:DP:GQ:PL 1/1:0,62:0,62:0.0156,0.9844:62:99:2523,187,0 -20 10004610 . A C 3640.06 . AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.75;QD=34.42;SOR=0.761 GT:AD:DD:DF:DP:GQ:PL 1/1:0,89:0,88.99:0.011,0.989:89:99:3654,267,0 -20 10004725 . A G 972.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;DP=67;ExcessHet=3.0103;FS=15.830;MLEAC=1;MLEAF=0.500;MQ=55.04;MQRankSum=3.008;QD=14.96;ReadPosRankSum=2.087;SOR=0.605 GT:AD:DD:DF:DP:GQ:PL 0/1:35,30:35,29:0.5455,0.4545:65:99:980,0,1168 -20 10004769 . TAAAACTATGC T 1011.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=80;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-6.625;QD=15.81;ReadPosRankSum=1.879;SOR=1.306 GT:AD:DD:DF:DP:GQ:PL 0/1:37,27:37.98,27.79:0.5752,0.4248:64:99:1019,0,1471 -20 10004874 . A C 3617.06 . AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.35;QD=28.53;SOR=1.286 GT:AD:DD:DF:DP:GQ:PL 1/1:0,87:0,86.99:0.0112,0.9888:87:99:3631,261,0 -20 10004887 . A G 1344.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=90;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.067;QD=15.82;ReadPosRankSum=-1.114;SOR=0.984 GT:AD:DD:DF:DP:GQ:PL 0/1:45,40:45,40:0.5288,0.4712:85:99:1352,0,1542 -20 10005010 . C T 2949.06 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.68;QD=27.23;SOR=1.226 GT:AD:DD:DF:DP:GQ:PL 1/1:0,72:0,72:0.0135,0.9865:72:99:2963,217,0 -20 10005427 . C T 2229.06 . AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.62;QD=29.52;SOR=0.729 GT:AD:DD:DF:DP:GQ:PL 1/1:0,55:0,54.99:0.0176,0.9824:55:99:2243,165,0 -20 10005499 . A G 3068.06 . AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.47;SOR=1.121 GT:AD:DD:DF:DP:GQ:PL 1/1:0,76:0,75:0.013,0.987:76:99:3082,229,0 -20 10005587 . A G 1250.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;DP=76;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.972;QD=17.37;ReadPosRankSum=0.248;SOR=0.848 GT:AD:DD:DF:DP:GQ:PL 0/1:36,36:35.89,36.1:0.4986,0.5014:72:99:1258,0,1236 -20 10005723 . A G 3077.06 . AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.79;QD=32.91;SOR=0.947 GT:AD:DD:DF:DP:GQ:PL 1/1:0,86:0,85.99:0.0114,0.9886:86:99:3091,258,0 -20 10006291 . G A 999.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=85;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-1.081;QD=11.90;ReadPosRankSum=-1.447;SOR=0.659 GT:AD:DD:DF:DP:GQ:PL 0/1:53,31:53,31:0.6279,0.3721:84:99:1007,0,1905 -20 10006404 . A C 2943.06 . AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.22;QD=31.31;SOR=1.432 GT:AD:DD:DF:DP:GQ:PL 1/1:0,76:0,76:0.0128,0.9872:76:99:2957,228,0 -20 10006682 . T A 2889.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.44;QD=31.45;SOR=1.179 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,72.99:0.0133,0.9867:73:99:2903,219,0 -20 10006819 . AAAAC A 2554.03 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.06;QD=33.27;SOR=0.762 GT:AD:DD:DF:DP:GQ:PL 1/1:0,58:0.01,58.98:0.0166,0.9834:58:99:2568,176,0 -20 10007150 . G C 690.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DP=64;ExcessHet=3.0103;FS=5.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.077;SOR=0.746 GT:AD:DD:DF:DP:GQ:PL 0/1:38,25:38.15,24.84:0.6024,0.3976:63:99:698,0,1479 -20 10007175 . C T 1371.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;DP=63;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=1.319;QD=22.49;ReadPosRankSum=-1.213;SOR=0.434 GT:AD:DD:DF:DP:GQ:PL 0/1:23,38:23,38:0.3809,0.6191:61:99:1379,0,780 -20 10007352 . C T 2779.06 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;QD=31.26;SOR=1.054 GT:AD:DD:DF:DP:GQ:PL 1/1:0,69:0,69:0.0141,0.9859:69:99:2793,208,0 -20 10007531 . A G 2935.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.75;QD=27.76;SOR=1.577 GT:AD:DD:DF:DP:GQ:PL 1/1:0,72:0,72:0.0135,0.9865:72:99:2949,217,0 -20 10007980 . A C 3539.06 . AC=2;AF=1.00;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.70;QD=29.09;SOR=0.990 GT:AD:DD:DF:DP:GQ:PL 1/1:0,90:0,89.99:0.0109,0.9891:90:99:3553,270,0 -20 10008029 . T TA 2010.03 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.11;MQRankSum=0.651;QD=26.10;ReadPosRankSum=-1.357;SOR=0.774 GT:AD:DD:DF:DP:GQ:PL 1/1:3,74:2.93,74.32:0.0496,0.9504:77:99:2024,145,0 -20 10008146 . TA T 2165.03 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.56;QD=30.93;SOR=0.874 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0,69.09:0.0141,0.9859:70:99:2179,211,0 -20 10008221 . T C 3239.06 . AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;QD=26.08;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 1/1:0,80:0,79.99:0.0122,0.9878:80:99:3253,240,0 -20 10008458 . T G 2669.06 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.76;QD=33.85;SOR=0.980 GT:AD:DD:DF:DP:GQ:PL 1/1:0,69:0,68.99:0.0141,0.9859:69:99:2683,207,0 -20 10008742 . G T 736.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.893;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.07;MQRankSum=-1.502;QD=15.03;ReadPosRankSum=0.200;SOR=0.741 GT:AD:DD:DF:DP:GQ:PL 0/1:23,26:5.39,39.66:0.1357,0.8643:49:99:744,0,580 -20 10008758 . C CA 707.49 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DP=51;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=37.72;MQRankSum=-0.875;QD=18.62;ReadPosRankSum=-0.262;SOR=0.405 GT:AD:DD:DF:DP:GQ:PL 1/1:4,34:0.22,38.5:0.03,0.97:38:10:721,10,0 -20 10008921 . C CA 283.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=60;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-1.306;QD=8.10;ReadPosRankSum=-0.017;SOR=0.644 GT:AD:DD:DF:DP:GQ:PL 0/1:18,17:17.38,15.82:0.5221,0.4779:35:99:291,0,366 -20 10008948 . TA T 2091.03 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQRankSum=1.946;QD=27.08;ReadPosRankSum=0.884;SOR=0.721 GT:AD:DD:DF:DP:GQ:PL 1/1:1,53:0.01,51.22:0.019,0.981:54:99:2105,117,0 -20 10008952 . CACACACACACA C,CCACACACACA 1700.02 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.963;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.23;MQRankSum=1.976;QD=25.42;ReadPosRankSum=0.868;SOR=1.112 GT:AD:DD:DF:DP:GQ:PL 1/2:1,17,18:0.07,15.27,16.5:0.0308,0.4668,0.5024:36:99:1717,539,803,595,0,533 -20 10009227 . A G 1390.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DP=63;ExcessHet=3.0103;FS=9.110;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=1.428;QD=22.43;ReadPosRankSum=-1.159;SOR=0.281 GT:AD:DD:DF:DP:GQ:PL 0/1:23,39:22,38:0.3709,0.6291:62:99:1398,0,740 -20 10009246 . A G 3017.06 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.68;QD=27.65;SOR=0.887 GT:AD:DD:DF:DP:GQ:PL 1/1:0,77:0,75:0.013,0.987:77:99:3031,231,0 -20 10009400 . T A 3013.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.804 GT:AD:DD:DF:DP:GQ:PL 1/1:0,74:0,74:0.0132,0.9868:74:99:3027,223,0 -20 10009512 . C G 3054.06 . AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.53;QD=30.56;SOR=1.223 GT:AD:DD:DF:DP:GQ:PL 1/1:0,77:0,76.99:0.0127,0.9873:77:99:3068,231,0 -20 10009719 . A G 1901.06 . AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.71;QD=33.35;SOR=1.047 GT:AD:DD:DF:DP:GQ:PL 1/1:0,57:0.01,56.97:0.017,0.983:57:99:1915,170,0 -20 10009795 . A G 1895.06 . AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.62;QD=33.63;SOR=1.514 GT:AD:DD:DF:DP:GQ:PL 1/1:0,47:0.01,46.85:0.0206,0.9794:47:99:1909,141,0 -20 10009842 . G GAA 562.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-0.936;QD=16.07;ReadPosRankSum=1.757;SOR=0.602 GT:AD:DD:DF:DP:GQ:PL 0/1:19,16:19.34,14.65:0.5651,0.4349:35:99:570,0,691 -20 10009844 . G A 683.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=0.975;QD=19.53;ReadPosRankSum=-2.419;SOR=0.793 GT:AD:DD:DF:DP:GQ:PL 0/1:16,19:14.68,19.38:0.4349,0.5651:35:99:691,0,585 -20 10009871 . A G 679.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=62;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=1.336;QD=18.37;ReadPosRankSum=0.840;SOR=0.631 GT:AD:DD:DF:DP:GQ:PL 0/1:18,19:16.46,20:0.4539,0.5461:37:99:687,0,593 -20 10009875 . A G,AGGGAGG 2389.06 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.378;DP=58;ExcessHet=3.0103;FS=6.463;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.44;MQRankSum=1.413;QD=30.55;ReadPosRankSum=1.373;SOR=0.461 GT:AD:DD:DF:DP:GQ:PL 1/2:2,15,14:0.11,16.06,14.02:0.0334,0.514,0.4525:31:99:2406,645,532,697,0,574 -20 10009879 . A G 2259.06 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=53;ExcessHet=3.0103;FS=8.605;MLEAC=2;MLEAF=1.00;MQ=50.48;MQRankSum=1.681;QD=32.62;ReadPosRankSum=1.113;SOR=1.198 GT:AD:DD:DF:DP:GQ:PL 1/1:2,51:0.04,50.39:0.0198,0.9802:53:99:2273,150,0 -20 10009883 . A G 2166.06 . AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.81;QD=29.33;SOR=1.755 GT:AD:DD:DF:DP:GQ:PL 1/1:0,49:15.8,24.8:0.3944,0.6056:49:99:2180,147,0 -20 10010393 . T G 1485.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.351;DP=79;ExcessHet=3.0103;FS=11.600;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.284;QD=18.81;ReadPosRankSum=-1.738;SOR=0.606 GT:AD:DD:DF:DP:GQ:PL 0/1:36,43:35.88,43.12:0.4553,0.5447:79:99:1493,0,1230 -20 10010536 . G GA 2455.03 . AC=2;AF=1.00;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.74;QD=30.69;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 1/1:0,80:0,76.16:0.0128,0.9872:80:99:2469,240,0 -20 10010766 . T G 2426.06 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=35.36;SOR=0.818 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,66:0.0147,0.9853:66:99:2440,199,0 -20 10010832 . T C 2966.06 . AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.51;QD=34.30;SOR=1.091 GT:AD:DD:DF:DP:GQ:PL 1/1:0,75:0,75:0.013,0.987:75:99:2980,226,0 -20 10011075 . C T 1346.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.364;DP=86;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-1.036;SOR=0.968 GT:AD:DD:DF:DP:GQ:PL 0/1:44,39:43.91,39.07:0.5285,0.4715:83:99:1354,0,1333 -20 10011309 . T C 2707.06 . AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.00;SOR=1.223 GT:AD:DD:DF:DP:GQ:PL 1/1:0,77:0,76.99:0.0127,0.9873:77:99:2721,231,0 -20 10011517 . GA G 519.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DP=99;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=2.041;QD=6.84;ReadPosRankSum=0.603;SOR=0.412 GT:AD:DD:DF:DP:GQ:PL 0/1:46,30:46.44,29.73:0.6069,0.3931:76:99:527,0,876 -20 10011666 . C T 2976.06 . AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.06;QD=30.82;SOR=1.103 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,73:0.0133,0.9867:73:99:2990,220,0 -20 10011939 . C T 2528.06 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.55;QD=29.27;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 1/1:0,62:2.8,55.48:0.063,0.937:62:99:2542,187,0 -20 10012021 . CA C 2000.03 . AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.12;QD=30.30;SOR=1.196 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,65.06:0.0149,0.9851:66:99:2014,198,0 -20 10012362 . G T 850.06 . AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.31;QD=35.92;SOR=4.003 GT:AD:DD:DF:DP:GQ:PL 1/1:0,23:1.01,20.52:0.0853,0.9147:23:69:864,69,0 -20 10012384 . T C 250.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;DP=18;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=53.38;MQRankSum=-0.811;QD=13.92;ReadPosRankSum=0.800;SOR=0.044 GT:AD:DD:DF:DP:GQ:PL 0/1:10,8:11.43,5.87:0.6438,0.3562:18:99:258,0,355 -20 10012387 . T C 548.06 . AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.38;QD=32.24;SOR=3.383 GT:AD:DD:DF:DP:GQ:PL 1/1:0,17:1.07,14.46:0.1182,0.8818:17:50:562,50,0 -20 10012479 . A G 589.06 . AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.29;QD=34.65;SOR=0.804 GT:AD:DD:DF:DP:GQ:PL 1/1:0,17:0.01,15.98:0.0561,0.9439:17:50:603,50,0 -20 10012498 . C G 436.06 . AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.25;QD=29.63;SOR=1.609 GT:AD:DD:DF:DP:GQ:PL 1/1:0,10:2.78,5.26:0.3766,0.6234:10:30:450,30,0 -20 10012518 . T C 466.06 . AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.58;QD=28.76;SOR=1.270 GT:AD:DD:DF:DP:GQ:PL 1/1:0,11:1.22,9.76:0.1708,0.8292:11:33:480,33,0 -20 10012521 . C T 92.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.86;MQRankSum=-0.376;QD=7.72;ReadPosRankSum=2.405;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:8,4:8.13,3.85:0.6529,0.3471:12:99:100,0,221 -20 10012570 . G GCA 481.02 . AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.52;QD=29.94;SOR=3.442 GT:AD:DD:DF:DP:GQ:PL 1/1:0,11:0.44,5.97:0.1712,0.8288:11:33:495,33,0 -20 10012572 . GT G 481.02 . AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.60;QD=31.54;SOR=3.442 GT:AD:DD:DF:DP:GQ:PL 1/1:0,11:0.44,5.98:0.1712,0.8288:11:33:495,33,0 -20 10012631 . C CG 514.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=21;ExcessHet=3.0103;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-1.670;QD=24.50;ReadPosRankSum=-1.777;SOR=0.048 GT:AD:DD:DF:DP:GQ:PL 0/1:8,13:7.08,4.33:0.6023,0.3977:21:99:522,0,297 -20 10012636 . G C 548.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;DP=22;ExcessHet=3.0103;FS=5.959;MLEAC=1;MLEAF=0.500;MQ=48.93;MQRankSum=-1.513;QD=24.94;ReadPosRankSum=-1.777;SOR=0.058 GT:AD:DD:DF:DP:GQ:PL 0/1:8,14:6.62,5.69:0.5325,0.4675:22:99:556,0,294 -20 10012714 . G C 1315.06 . AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.52;QD=28.86;SOR=2.964 GT:AD:DD:DF:DP:GQ:PL 1/1:0,35:0,35:0.027,0.973:35:99:1329,105,0 -20 10012751 . T C 952.06 . AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.73;QD=31.74;SOR=0.976 GT:AD:DD:DF:DP:GQ:PL 1/1:0,30:0.01,29.97:0.0315,0.9685:30:89:966,89,0 -20 10013119 . C T 1032.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;DP=61;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=51.43;MQRankSum=-1.089;QD=17.50;ReadPosRankSum=0.159;SOR=0.405 GT:AD:DD:DF:DP:GQ:PL 0/1:29,30:27.85,30.57:0.4774,0.5226:59:99:1040,0,936 -20 10013574 . G A 1071.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;DP=73;ExcessHet=3.0103;FS=7.109;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-0.271;QD=15.53;ReadPosRankSum=0.706;SOR=1.675 GT:AD:DD:DF:DP:GQ:PL 0/1:38,31:38.01,30.99:0.5494,0.4506:69:99:1079,0,1301 -20 10014990 . C CAT 1267.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;DP=89;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=3.260;QD=16.46;ReadPosRankSum=-0.311;SOR=0.429 GT:AD:DD:DF:DP:GQ:PL 0/1:38,39:38.13,39.18:0.4934,0.5066:77:99:1275,0,1247 -20 10015679 . C T 161.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.497;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:5,5:4,5:0.4547,0.5453:10:99:169,0,166 -20 10015761 . T C 365.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=1.294;QD=16.62;ReadPosRankSum=1.805;SOR=0.352 GT:AD:DD:DF:DP:GQ:PL 0/1:9,13:13.95,6.5:0.6659,0.3341:22:99:373,0,284 -20 10018158 . G C 1660.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.213;DP=94;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.118;QD=18.87;ReadPosRankSum=1.179;SOR=0.834 GT:AD:DD:DF:DP:GQ:PL 0/1:40,48:39.95,48.04:0.455,0.545:88:99:1668,0,1165 -20 10018555 . G A 1588.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=84;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=0.815;SOR=0.627 GT:AD:DD:DF:DP:GQ:PL 0/1:35,45:35,45:0.439,0.561:80:99:1596,0,1211 -20 10019093 . A G 1265.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=73;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.073;QD=18.34;ReadPosRankSum=-0.252;SOR=0.665 GT:AD:DD:DF:DP:GQ:PL 0/1:33,36:32.88,36.11:0.4773,0.5227:69:99:1273,0,1104 -20 10020229 . G A 1559.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.792;DP=84;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.104;QD=19.02;ReadPosRankSum=-0.549;SOR=0.573 GT:AD:DD:DF:DP:GQ:PL 0/1:38,44:37.99,44.01:0.4642,0.5358:82:99:1567,0,1130 -20 10023689 . G A 1873.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;DP=82;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=1.352;QD=23.42;ReadPosRankSum=1.162;SOR=0.549 GT:AD:DD:DF:DP:GQ:PL 0/1:29,51:29,51:0.3658,0.6342:80:99:1881,0,946 -20 10024107 . C T 1715.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.770;DP=89;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.546;QD=19.95;ReadPosRankSum=0.148;SOR=0.823 GT:AD:DD:DF:DP:GQ:PL 0/1:38,48:37.85,48.14:0.4415,0.5585:86:99:1723,0,1086 -20 10024300 . C CTT 134.01 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-0.728;QD=8.38;ReadPosRankSum=-0.140;SOR=1.863 GT:AD:DD:DF:DP:GQ:PL 0/1:8,8:6.66,8.51:0.4463,0.5537:16:99:106,0,111 -20 10026357 . T C 1187.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DP=63;ExcessHet=3.0103;FS=8.911;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-0.148;QD=18.85;ReadPosRankSum=-0.076;SOR=0.722 GT:AD:DD:DF:DP:GQ:PL 0/1:28,35:27.99,35.01:0.446,0.554:63:99:1195,0,932 -20 10026794 . C T 1105.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;DP=56;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.719;QD=21.26;ReadPosRankSum=-0.533;SOR=0.428 GT:AD:DD:DF:DP:GQ:PL 0/1:19,33:19.12,32.87:0.3726,0.6274:52:99:1113,0,529 -20 10027234 . A ATTAG 1350.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=75;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-0.845;QD=19.57;ReadPosRankSum=-0.510;SOR=0.926 GT:AD:DD:DF:DP:GQ:PL 0/1:34,35:34.21,35.14:0.4935,0.5065:69:99:1358,0,1320 -20 10027868 . A G 1760.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.793;DP=91;ExcessHet=3.0103;FS=6.873;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.047;QD=19.56;ReadPosRankSum=1.872;SOR=0.937 GT:AD:DD:DF:DP:GQ:PL 0/1:44,46:44,46:0.4892,0.5108:90:99:1768,0,1671 -20 10027872 . A G 1745.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.491;DP=88;ExcessHet=3.0103;FS=8.704;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.065;QD=20.06;ReadPosRankSum=1.053;SOR=0.834 GT:AD:DD:DF:DP:GQ:PL 0/1:42,45:42,45:0.4831,0.5169:87:99:1753,0,1606 -20 10028867 . A ATG 1137.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DP=93;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=2.711;QD=16.02;ReadPosRankSum=0.630;SOR=0.336 GT:AD:DD:DF:DP:GQ:PL 0/1:32,39:32.6,37.8:0.4641,0.5359:71:99:1145,0,915 -20 10030188 . T A 1393.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=82;ExcessHet=3.0103;FS=9.186;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.013;QD=17.21;ReadPosRankSum=-0.553;SOR=1.105 GT:AD:DD:DF:DP:GQ:PL 0/1:42,39:42,39:0.5181,0.4819:81:99:1401,0,1524 -20 10031254 . A AT 1493.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=90;ExcessHet=3.0103;FS=9.250;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.017;QD=17.57;ReadPosRankSum=0.663;SOR=0.211 GT:AD:DD:DF:DP:GQ:PL 0/1:38,47:37.77,46.47:0.4496,0.5504:85:99:1501,0,1159 -20 10031342 . G A 1855.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;DP=93;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.866;QD=19.95;ReadPosRankSum=-0.012;SOR=0.955 GT:AD:DD:DF:DP:GQ:PL 0/1:41,52:40.99,50.01:0.4515,0.5485:93:99:1863,0,1375 -20 10031798 . G A 4311.06 . AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.61;QD=29.41;SOR=0.900 GT:AD:DD:DF:DP:GQ:PL 1/1:0,104:0,104:0.0094,0.9906:104:99:4325,313,0 -20 10031827 . C T 2025.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.552;DP=115;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.945;QD=18.76;ReadPosRankSum=-1.396;SOR=0.382 GT:AD:DD:DF:DP:GQ:PL 0/1:52,56:52,56:0.4818,0.5182:108:99:2033,0,1798 -20 10032094 . G A 1241.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.488;DP=86;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.579;SOR=0.260 GT:AD:DD:DF:DP:GQ:PL 0/1:47,36:46.91,36.08:0.5637,0.4363:83:99:1249,0,1497 -20 10032413 . T G 890.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.142;DP=66;ExcessHet=3.0103;FS=10.444;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.065;QD=13.49;ReadPosRankSum=-1.003;SOR=1.293 GT:AD:DD:DF:DP:GQ:PL 0/1:35,31:35.01,30.99:0.5295,0.4705:66:99:898,0,1277 -20 10032882 . A T 1223.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.697;DP=76;ExcessHet=3.0103;FS=4.673;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.014;QD=16.32;ReadPosRankSum=0.626;SOR=0.338 GT:AD:DD:DF:DP:GQ:PL 0/1:39,36:39.01,35.99:0.5195,0.4805:75:99:1231,0,1406 -20 10032972 . C CAT 1152.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=67;ExcessHet=3.0103;FS=5.062;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.017;QD=18.30;ReadPosRankSum=-0.723;SOR=1.300 GT:AD:DD:DF:DP:GQ:PL 0/1:33,30:33.06,30.06:0.5231,0.4769:63:99:1160,0,1295 -20 10034306 . T C 803.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;DP=80;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=1.150;QD=10.72;ReadPosRankSum=0.539;SOR=0.685 GT:AD:DD:DF:DP:GQ:PL 0/1:46,29:46.17,28.82:0.6127,0.3873:75:99:811,0,1593 -20 10036930 . CGATAGCCCTAGCCCTAGATA C 1063.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=98;ExcessHet=3.0103;FS=11.152;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-4.048;QD=15.64;ReadPosRankSum=0.460;SOR=0.269 GT:AD:DD:DF:DP:GQ:PL 0/1:39,29:48.82,24.66:0.66,0.34:68:99:1071,0,1507 -20 10037037 . C T 1457.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.504;DP=88;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.193;QD=18.00;ReadPosRankSum=-1.609;SOR=0.495 GT:AD:DD:DF:DP:GQ:PL 0/1:39,42:37.42,42.54:0.4688,0.5312:81:99:1465,0,1124 -20 10037110 . T TGATA 2804.03 . AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.01;QD=31.11;SOR=0.933 GT:AD:DD:DF:DP:GQ:PL 1/1:0,63:0.02,62.2:0.0158,0.9842:63:99:2818,189,0 -20 10037144 . T TGATAGATA 1847.03 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.21;QD=34.66;SOR=1.179 GT:AD:DD:DF:DP:GQ:PL 1/1:0,43:0.05,44.81:0.0223,0.9777:43:99:1861,127,0 -20 10037709 . A T 1024.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.934;QD=14.43;ReadPosRankSum=0.040;SOR=0.608 GT:AD:DD:DF:DP:GQ:PL 0/1:39,32:39.12,31.88:0.5496,0.4504:71:99:1032,0,1354 -20 10039371 . T G 1345.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;DP=76;ExcessHet=3.0103;FS=6.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=0.391;SOR=1.031 GT:AD:DD:DF:DP:GQ:PL 0/1:34,40:34.01,39.99:0.4606,0.5394:74:99:1353,0,1194 -20 10040772 . C CT 2020.03 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.32;QD=28.86;SOR=0.811 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0,70.15:0.0139,0.9861:70:99:2034,210,0 -20 10040812 . AT A 2631.03 . AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.21;QD=29.40;SOR=0.721 GT:AD:DD:DF:DP:GQ:PL 1/1:0,71:0,70.75:0.0138,0.9862:71:99:2645,214,0 -20 10040821 . T A 1192.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-0.097;QD=15.29;ReadPosRankSum=-1.350;SOR=0.688 GT:AD:DD:DF:DP:GQ:PL 0/1:38,40:37.35,39.76:0.4848,0.5152:78:99:1200,0,1099 -20 10041304 . C T 2780.06 . AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.39;QD=36.76;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 1/1:0,68:0.06,67:0.0153,0.9847:68:99:2794,204,0 -20 10041701 . A ATATG 1434.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=80;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=0.340;QD=24.32;ReadPosRankSum=-0.023;SOR=0.260 GT:AD:DD:DF:DP:GQ:PL 0/1:9,50:7.42,50.46:0.1407,0.8593:59:57:1442,0,57 -20 10042319 . C T 2673.06 . AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.06;QD=30.54;SOR=1.033 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,66:0.0147,0.9853:66:99:2687,199,0 -20 10042761 . A G 3568.06 . AC=2;AF=1.00;AN=2;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=21.53;SOR=1.389 GT:AD:DD:DF:DP:GQ:PL 1/1:0,91:0,89.98:0.0109,0.9891:91:99:3582,272,0 -20 10042829 . A G 3070.06 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.77;QD=34.87;SOR=0.855 GT:AD:DD:DF:DP:GQ:PL 1/1:0,78:0,77:0.0127,0.9873:78:99:3084,235,0 -20 10043002 . A T 1308.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DP=89;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-0.035;SOR=0.434 GT:AD:DD:DF:DP:GQ:PL 0/1:48,38:47.99,38.01:0.5568,0.4432:86:99:1316,0,1658 -20 10044849 . A G 2106.06 . AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.61;QD=31.04;SOR=1.316 GT:AD:DD:DF:DP:GQ:PL 1/1:0,59:0,58.98:0.0164,0.9836:59:99:2120,177,0 -20 10045078 . G T 3286.06 . AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.78;QD=27.86;SOR=0.876 GT:AD:DD:DF:DP:GQ:PL 1/1:0,81:0,81:0.012,0.988:81:99:3300,244,0 -20 10045642 . G C 3122.06 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;QD=34.17;SOR=0.821 GT:AD:DD:DF:DP:GQ:PL 1/1:0,81:0,80.34:0.0122,0.9878:81:99:3136,243,0 -20 10046178 . AAGAAAGAAAG A 2136.03 . AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.77;QD=28.60;SOR=0.818 GT:AD:DD:DF:DP:GQ:PL 1/1:0,49:0.02,49.53:0.0197,0.9803:49:99:2150,149,0 -20 10046537 . A G 840.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.909;DP=57;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=0.395;QD=14.75;ReadPosRankSum=0.727;SOR=1.262 GT:AD:DD:DF:DP:GQ:PL 0/1:28,29:27.99,29:0.4914,0.5086:57:99:848,0,902 -20 10050828 . T C 1248.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;DP=91;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.892;QD=14.52;ReadPosRankSum=-0.140;SOR=0.521 GT:AD:DD:DF:DP:GQ:PL 0/1:49,37:48.92,37.07:0.5673,0.4327:86:99:1256,0,1768 -20 10051448 . T C 1155.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=71;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.404;QD=16.51;ReadPosRankSum=-0.705;SOR=0.302 GT:AD:DD:DF:DP:GQ:PL 0/1:35,35:34.99,35:0.5,0.5:70:99:1163,0,1150 -20 10052688 . C A 1083.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=83;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.870;QD=14.07;ReadPosRankSum=1.443;SOR=0.379 GT:AD:DD:DF:DP:GQ:PL 0/1:45,32:45,32:0.5823,0.4177:77:99:1091,0,1645 -20 10058022 . T C 996.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;DP=72;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.466;QD=14.66;ReadPosRankSum=0.018;SOR=0.849 GT:AD:DD:DF:DP:GQ:PL 0/1:36,32:36.12,31.88:0.5303,0.4697:68:99:1004,0,1261 -20 10062935 . C CA 123.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-1.502;QD=5.37;ReadPosRankSum=-1.113;SOR=0.743 GT:AD:DD:DF:DP:GQ:PL 0/1:13,10:9.88,12.14:0.453,0.547:23:99:131,0,101 -20 10067049 . TAAAAAAAA T,TA 633.02 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.106;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.73;MQRankSum=-0.429;QD=28.77;ReadPosRankSum=-1.226;SOR=0.941 GT:AD:DD:DF:DP:GQ:PL 1/2:2,11,9:2.14,8.73,9.99:0.1315,0.4079,0.4606:22:99:650,163,340,134,0,106 -20 10067090 . C A 2019.06 . AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.57;QD=25.57;SOR=0.729 GT:AD:DD:DF:DP:GQ:PL 1/1:0,55:0.26,41.87:0.0286,0.9714:55:99:2033,164,0 -20 10067264 . G A 2937.06 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.37;QD=33.11;SOR=0.776 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,72.99:0.0133,0.9867:73:99:2951,219,0 -20 10067722 . A C 2161.06 . AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.20;SOR=0.846 GT:AD:DD:DF:DP:GQ:PL 1/1:0,54:0,54:0.0179,0.9821:54:99:2175,163,0 -20 10068158 . GTGTATATATATA G 97.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=28;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=0.328;QD=13.94;ReadPosRankSum=0.524;SOR=0.061 GT:AD:DD:DF:DP:GQ:PL 0/1:3,4:2.57,4.63:0.3881,0.6119:7:57:105,0,57 -20 10068160 . GTATATATATATGTA G,* 56.01 . AC=1,1;AF=0.500,0.500;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.29;QD=9.33;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 1/2:0,2,4:0.09,2.37,4.67:0.1079,0.3328,0.5594:6:53:706,158,131,98,0,53 -20 10068981 . G A 2518.06 . AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.49;SOR=0.941 GT:AD:DD:DF:DP:GQ:PL 1/1:0,61:0,60.97:0.0159,0.9841:61:99:2532,184,0 -20 10070602 . T C 2706.06 . AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.78;QD=31.67;SOR=0.749 GT:AD:DD:DF:DP:GQ:PL 1/1:0,72:0,71.99:0.0135,0.9865:72:99:2720,216,0 -20 10070936 . T A 3646.06 . AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.96;QD=29.53;SOR=0.846 GT:AD:DD:DF:DP:GQ:PL 1/1:0,82:0,82.06:0.0119,0.9881:82:99:3660,247,0 -20 10070938 . G GA 3680.03 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.07;QD=32.63;SOR=0.818 GT:AD:DD:DF:DP:GQ:PL 1/1:0,83:0,83.03:0.0118,0.9882:83:99:3694,250,0 -20 10071135 . C T 3272.06 . AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.21;QD=30.36;SOR=1.003 GT:AD:DD:DF:DP:GQ:PL 1/1:0,79:0,79:0.0124,0.9876:79:99:3286,238,0 -20 10071187 . G A 3425.06 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.73;QD=28.13;SOR=1.367 GT:AD:DD:DF:DP:GQ:PL 1/1:0,82:0,81.99:0.0119,0.9881:82:99:3439,246,0 -20 10071890 . T C 1989.06 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.31;QD=34.90;SOR=0.728 GT:AD:DD:DF:DP:GQ:PL 1/1:0,57:0,57:0.017,0.983:57:99:2003,171,0 -20 10072505 . A G 2114.06 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.03;SOR=0.822 GT:AD:DD:DF:DP:GQ:PL 1/1:0,64:0,63.97:0.0152,0.9848:64:99:2128,191,0 -20 10074187 . A G 3116.06 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.14;QD=27.97;SOR=0.881 GT:AD:DD:DF:DP:GQ:PL 1/1:0,79:0.01,78.59:0.0125,0.9875:79:99:3130,238,0 -20 10074240 . T C 3421.06 . AC=2;AF=1.00;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.79;QD=28.31;SOR=0.922 GT:AD:DD:DF:DP:GQ:PL 1/1:0,85:0.01,84.59:0.0116,0.9884:85:99:3435,255,0 -20 10074716 . G A 2415.06 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;QD=35.21;SOR=1.214 GT:AD:DD:DF:DP:GQ:PL 1/1:0,64:0,63.99:0.0152,0.9848:64:99:2429,192,0 -20 10074806 . G A 2832.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.38;QD=35.18;SOR=0.840 GT:AD:DD:DF:DP:GQ:PL 1/1:0,71:0,70.99:0.0137,0.9863:71:99:2846,213,0 -20 10075043 . T C 2420.06 . AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.64;QD=29.59;SOR=1.107 GT:AD:DD:DF:DP:GQ:PL 1/1:0,61:0,61:0.0159,0.9841:61:99:2434,184,0 -20 10075168 . C T 3627.06 . AC=2;AF=1.00;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.37;QD=32.25;SOR=0.997 GT:AD:DD:DF:DP:GQ:PL 1/1:0,88:0,87.98:0.0111,0.9889:88:99:3641,264,0 -20 10075508 . GA G 1952.03 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.11;QD=27.89;SOR=1.085 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0.01,69.96:0.014,0.986:70:99:1966,210,0 -20 10076250 . A G 1128.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.386;DP=82;ExcessHet=3.0103;FS=7.546;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.423;QD=14.29;ReadPosRankSum=0.270;SOR=0.344 GT:AD:DD:DF:DP:GQ:PL 0/1:40,39:40.12,38.88:0.5076,0.4924:79:99:1136,0,1339 -20 10076339 . A G 1330.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=76;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.866;QD=18.48;ReadPosRankSum=1.015;SOR=0.446 GT:AD:DD:DF:DP:GQ:PL 0/1:32,40:39.3,31.4:0.5544,0.4456:72:99:1338,0,1035 -20 10076399 . G A 1828.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.154;DP=95;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-1.058;SOR=0.952 GT:AD:DD:DF:DP:GQ:PL 0/1:44,50:43.62,50.29:0.4652,0.5348:94:99:1836,0,1544 -20 10076989 . CA C,CAA 235.02 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.566;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.29;MQRankSum=-0.507;QD=7.58;ReadPosRankSum=-0.608;SOR=0.653 GT:AD:DD:DF:DP:GQ:PL 1/2:7,17,7:7.54,14.16,6.48:0.2739,0.4863,0.2399:31:41:252,41,376,147,0,360 -20 10077752 . T C 1366.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.503;DP=83;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=-0.352;SOR=1.251 GT:AD:DD:DF:DP:GQ:PL 0/1:34,45:34.01,44.99:0.4322,0.5678:79:99:1374,0,1187 -20 10079476 . T G 31.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570;DP=55;ExcessHet=3.0103;FS=57.922;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-0.826;QD=0.72;ReadPosRankSum=1.533;SOR=4.970 GT:AD:DD:DF:DP:GQ:PL 0/1:33,11:32.75,10.85:0.7401,0.2599:44:39:39,0,1137 -20 10081750 . C A 1374.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DP=92;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.406;SOR=0.664 GT:AD:DD:DF:DP:GQ:PL 0/1:44,39:43.9,39.09:0.5283,0.4717:83:99:1382,0,1525 -20 10081800 . C T 1130.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=69;ExcessHet=3.0103;FS=11.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-2.622;SOR=0.143 GT:AD:DD:DF:DP:GQ:PL 0/1:35,33:34.93,33.07:0.5133,0.4867:68:99:1138,0,1222 -20 10082892 . C T 1727.06 . AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;QD=34.86;SOR=0.883 GT:AD:DD:DF:DP:GQ:PL 1/1:0,44:0,43.99:0.0218,0.9782:44:99:1741,132,0 -20 10085211 . A T 1231.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DP=81;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.028;QD=16.21;ReadPosRankSum=-1.405;SOR=0.723 GT:AD:DD:DF:DP:GQ:PL 0/1:40,36:40,36:0.5257,0.4743:76:99:1239,0,1443 -20 10086110 . G A 1295.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;DP=83;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-0.680;QD=16.00;ReadPosRankSum=0.170;SOR=0.495 GT:AD:DD:DF:DP:GQ:PL 0/1:43,38:43,38:0.5301,0.4699:81:99:1303,0,1506 -20 10086283 . G T 1046.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;DP=86;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=1.889;SOR=0.529 GT:AD:DD:DF:DP:GQ:PL 0/1:52,32:52,32:0.6163,0.3837:84:99:1054,0,1771 -20 10086619 . T A 817.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=76;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.312;QD=11.68;ReadPosRankSum=-0.760;SOR=0.846 GT:AD:DD:DF:DP:GQ:PL 0/1:45,25:45,25:0.6389,0.3611:70:99:825,0,1603 -20 10086853 . G A 1023.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.915;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-0.177;QD=14.02;ReadPosRankSum=-0.100;SOR=0.767 GT:AD:DD:DF:DP:GQ:PL 0/1:41,32:41.12,31.87:0.5617,0.4383:73:99:1031,0,1280 -20 10086954 . G A 1116.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=70;ExcessHet=3.0103;FS=4.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-0.534;SOR=1.185 GT:AD:DD:DF:DP:GQ:PL 0/1:34,34:34.09,33.9:0.5014,0.4986:68:99:1124,0,1051 -20 10087230 . A G 1863.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;DP=101;ExcessHet=3.0103;FS=3.860;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=1.707;QD=19.41;ReadPosRankSum=0.307;SOR=0.960 GT:AD:DD:DF:DP:GQ:PL 0/1:42,54:42,54:0.4388,0.5612:96:99:1871,0,1428 -20 10087394 . T G 1709.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;DP=85;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=1.207;QD=20.35;ReadPosRankSum=0.885;SOR=0.436 GT:AD:DD:DF:DP:GQ:PL 0/1:35,49:35,49:0.4186,0.5814:84:99:1717,0,1186 -20 10087754 . T G 1403.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=87;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.166;QD=17.77;ReadPosRankSum=-0.378;SOR=0.596 GT:AD:DD:DF:DP:GQ:PL 0/1:37,42:37.02,40.98:0.4752,0.5248:79:99:1411,0,1236 -20 10087804 . C T 1640.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;DP=104;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.618;QD=16.41;ReadPosRankSum=0.341;SOR=0.369 GT:AD:DD:DF:DP:GQ:PL 0/1:50,50:49.78,50.2:0.4979,0.5021:100:99:1648,0,1511 -20 10087820 . C CAG 458.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.422;QD=8.34;ReadPosRankSum=-0.019;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 0/1:37,18:38.59,18.7:0.6677,0.3323:55:99:466,0,1168 -20 10088063 . C T 1438.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DP=94;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.515;QD=15.47;ReadPosRankSum=0.285;SOR=1.053 GT:AD:DD:DF:DP:GQ:PL 0/1:49,44:48.71,44.28:0.5233,0.4767:93:99:1446,0,1403 -20 10088699 . C T 797.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DP=67;ExcessHet=3.0103;FS=16.952;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-3.140;QD=12.87;ReadPosRankSum=-1.456;SOR=1.914 GT:AD:DD:DF:DP:GQ:PL 0/1:36,26:35.82,26.14:0.5757,0.4243:62:99:805,0,1088 -20 10088730 . G A 993.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=57;ExcessHet=3.0103;FS=9.708;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-5.213;QD=17.74;ReadPosRankSum=0.581;SOR=1.011 GT:AD:DD:DF:DP:GQ:PL 0/1:30,26:29.8,26.16:0.5314,0.4686:56:99:1001,0,1152 -20 10088736 . A C 1102.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=60;ExcessHet=3.0103;FS=7.080;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-5.157;QD=18.38;ReadPosRankSum=0.573;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 0/1:31,29:30.79,29.17:0.5131,0.4869:60:99:1110,0,1194 -20 10088747 . A G 1132.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.877;DP=56;ExcessHet=3.0103;FS=9.708;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-4.881;QD=20.23;ReadPosRankSum=0.009;SOR=1.162 GT:AD:DD:DF:DP:GQ:PL 0/1:26,30:26.01,29.99:0.4656,0.5344:56:99:1140,0,995 -20 10088799 . G A 1039.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.503;DP=54;ExcessHet=3.0103;FS=10.098;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-2.498;QD=19.62;ReadPosRankSum=1.075;SOR=1.003 GT:AD:DD:DF:DP:GQ:PL 0/1:22,31:21.99,31.01:0.4181,0.5819:53:99:1047,0,617 -20 10088895 . C T 556.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=0.260;QD=13.92;ReadPosRankSum=1.238;SOR=0.727 GT:AD:DD:DF:DP:GQ:PL 0/1:22,18:22.44,17.36:0.5608,0.4392:40:99:564,0,651 -20 10088968 . C CAAA 1205.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQRankSum=-5.145;QD=18.84;ReadPosRankSum=0.629;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:32,32:27.12,31.61:0.463,0.537:64:99:1213,0,1236 -20 10088980 . T C 1268.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.42;MQRankSum=-5.018;QD=17.38;ReadPosRankSum=1.577;SOR=0.758 GT:AD:DD:DF:DP:GQ:PL 0/1:39,34:34.1,32.19:0.514,0.486:73:99:1276,0,1497 -20 10088985 . T C 1199.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DP=77;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=-5.248;QD=16.21;ReadPosRankSum=1.452;SOR=0.742 GT:AD:DD:DF:DP:GQ:PL 0/1:42,32:37.29,30.08:0.552,0.448:74:99:1207,0,1599 -20 10089441 . A G 1200.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.885;DP=79;ExcessHet=3.0103;FS=6.071;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.948;QD=15.80;ReadPosRankSum=-0.156;SOR=1.363 GT:AD:DD:DF:DP:GQ:PL 0/1:37,39:37.17,36.54:0.5042,0.4958:76:99:1208,0,1313 -20 10089525 . C T 1569.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.859;DP=83;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=1.531;QD=19.38;ReadPosRankSum=0.862;SOR=0.617 GT:AD:DD:DF:DP:GQ:PL 0/1:38,43:36.86,43.14:0.4617,0.5383:81:99:1577,0,1088 -20 10090289 . CA C 414.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=88;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.531;QD=10.91;ReadPosRankSum=0.535;SOR=1.127 GT:AD:DD:DF:DP:GQ:PL 0/1:14,24:13.43,18.97:0.4195,0.5805:38:99:422,0,231 -20 10090764 . A G 861.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;DP=67;ExcessHet=3.0103;FS=4.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=1.207;SOR=0.310 GT:AD:DD:DF:DP:GQ:PL 0/1:34,29:34.13,28.87:0.5405,0.4595:63:99:869,0,1207 -20 10090970 . T C 1278.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DP=70;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=1.509;QD=18.53;ReadPosRankSum=-0.072;SOR=0.518 GT:AD:DD:DF:DP:GQ:PL 0/1:33,36:32.77,36.22:0.4757,0.5243:69:99:1286,0,1092 -20 10091214 . C T 1270.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.916;QD=18.15;ReadPosRankSum=-0.035;SOR=0.625 GT:AD:DD:DF:DP:GQ:PL 0/1:33,37:33,37:0.4722,0.5278:70:99:1278,0,1110 -20 10092415 . A G 1656.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.731;DP=103;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.082;SOR=0.665 GT:AD:DD:DF:DP:GQ:PL 0/1:52,49:51.9,49.09:0.5137,0.4863:101:99:1664,0,1901 -20 10092927 . G T 127.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=83;ExcessHet=3.0103;FS=60.191;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.009;QD=1.77;ReadPosRankSum=-0.220;SOR=5.279 GT:AD:DD:DF:DP:GQ:PL 0/1:59,13:59.92,12.02:0.8239,0.1761:72:99:135,0,1864 -20 10093568 . GT G 356.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=1.078;QD=8.29;ReadPosRankSum=0.655;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:22,21:21.87,18.86:0.5352,0.4648:43:99:364,0,386 -20 10093923 . T A 1096.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=73;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.358;QD=16.37;ReadPosRankSum=-1.583;SOR=0.772 GT:AD:DD:DF:DP:GQ:PL 0/1:35,32:35.01,31.99:0.5218,0.4782:67:99:1104,0,1257 -20 10094251 . T A 1291.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=67;ExcessHet=3.0103;FS=11.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=1.806;SOR=1.211 GT:AD:DD:DF:DP:GQ:PL 0/1:26,36:25.57,36.41:0.4153,0.5847:62:99:1299,0,781 -20 10094582 . A G 944.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=1.270;QD=13.69;ReadPosRankSum=-0.018;SOR=0.772 GT:AD:DD:DF:DP:GQ:PL 0/1:39,30:39.01,29.99:0.5635,0.4365:69:99:952,0,1350 -20 10094774 . C T 1057.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.962;QD=14.10;ReadPosRankSum=0.197;SOR=0.690 GT:AD:DD:DF:DP:GQ:PL 0/1:40,35:40.15,34.82:0.5346,0.4654:75:99:1065,0,1282 -20 10095432 . GTGATGATGA G 868.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=79;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-4.431;QD=17.37;ReadPosRankSum=0.396;SOR=0.460 GT:AD:DD:DF:DP:GQ:PL 0/1:27,23:27.11,23.15:0.5379,0.4621:50:99:876,0,1000 -20 10095741 . A G 1096.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DP=72;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-2.313;QD=15.67;ReadPosRankSum=-0.500;SOR=0.515 GT:AD:DD:DF:DP:GQ:PL 0/1:36,34:36.11,33.89:0.5154,0.4846:70:99:1104,0,1233 -20 10096293 . C T 1376.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=1.397;QD=18.36;ReadPosRankSum=-1.135;SOR=0.638 GT:AD:DD:DF:DP:GQ:PL 0/1:37,38:37,38.01:0.4934,0.5066:75:99:1384,0,1258 -20 10096596 . C T 1583.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=0.612;QD=18.20;ReadPosRankSum=-0.170;SOR=0.640 GT:AD:DD:DF:DP:GQ:PL 0/1:40,47:40.08,46.92:0.4616,0.5384:87:99:1591,0,1273 -20 10096768 . A C 1703.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.764;DP=96;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.609;QD=18.72;ReadPosRankSum=0.613;SOR=0.445 GT:AD:DD:DF:DP:GQ:PL 0/1:42,49:42,49:0.4623,0.5377:91:99:1711,0,1452 -20 10096899 . G T 1635.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.755;DP=84;ExcessHet=3.0103;FS=13.441;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.677;QD=19.71;ReadPosRankSum=0.422;SOR=1.954 GT:AD:DD:DF:DP:GQ:PL 0/1:40,43:40,43.01:0.4823,0.5177:83:99:1643,0,1520 -20 10096905 . TA T 1630.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=86;ExcessHet=3.0103;FS=11.056;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.739;QD=18.96;ReadPosRankSum=0.461;SOR=1.761 GT:AD:DD:DF:DP:GQ:PL 0/1:43,43:43,43:0.5,0.5:86:99:1638,0,1623 -20 10096933 . G C 1534.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;DP=89;ExcessHet=3.0103;FS=19.713;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-1.840;QD=17.24;ReadPosRankSum=0.383;SOR=1.420 GT:AD:DD:DF:DP:GQ:PL 0/1:47,42:47.11,41.88:0.5287,0.4713:89:99:1542,0,1763 -20 10096958 . G A 1789.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DP=93;ExcessHet=3.0103;FS=19.322;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-1.664;QD=19.45;ReadPosRankSum=-1.593;SOR=1.431 GT:AD:DD:DF:DP:GQ:PL 0/1:44,48:43.98,48.01:0.4786,0.5214:92:99:1797,0,1622 -20 10097075 . T G 1466.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;DP=96;ExcessHet=3.0103;FS=6.613;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-1.389;QD=15.94;ReadPosRankSum=0.235;SOR=0.628 GT:AD:DD:DF:DP:GQ:PL 0/1:44,48:44.15,46.79:0.4858,0.5142:92:99:1474,0,1482 -20 10097101 . C CTTT 1124.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;DP=81;ExcessHet=3.0103;FS=7.014;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-1.720;QD=16.79;ReadPosRankSum=3.010;SOR=0.519 GT:AD:DD:DF:DP:GQ:PL 0/1:33,34:33.4,31.07:0.5175,0.4825:67:99:1132,0,1217 -20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 1081.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=90;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-6.464;QD=12.15;ReadPosRankSum=-3.097;SOR=0.948 GT:AD:DD:DF:DP:GQ:PL 0/1:57,32:56.34,30.75:0.6436,0.3564:89:99:1089,0,2243 -20 10097437 . TTTTC *,T 929.01 . AC=1,1;AF=0.500,0.500;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.68;QD=16.89;SOR=1.877 GT:AD:DD:DF:DP:GQ:PL 1/2:0,32,23:0.03,31.04,23.53:0.0179,0.5562,0.4259:55:99:2123,939,1800,1192,0,1122 -20 10097626 . C A 647.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=54;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-1.331;QD=13.49;ReadPosRankSum=1.015;SOR=0.324 GT:AD:DD:DF:DP:GQ:PL 0/1:28,20:27.92,20.07:0.5785,0.4215:48:99:655,0,957 -20 10097789 . T C 709.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;DP=60;ExcessHet=3.0103;FS=5.374;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-2.805;QD=12.45;ReadPosRankSum=0.220;SOR=0.756 GT:AD:DD:DF:DP:GQ:PL 0/1:34,23:34,23:0.5933,0.4067:57:99:717,0,1190 -20 10097928 . G A 591.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=37;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-1.654;QD=16.43;ReadPosRankSum=-0.079;SOR=0.951 GT:AD:DD:DF:DP:GQ:PL 0/1:17,19:17,19:0.4737,0.5263:36:99:599,0,586 -20 10098110 . G C 607.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;DP=36;ExcessHet=3.0103;FS=6.658;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-1.477;QD=16.88;ReadPosRankSum=-0.730;SOR=0.069 GT:AD:DD:DF:DP:GQ:PL 0/1:19,17:18.84,14.72:0.558,0.442:36:99:615,0,727 -20 10098135 . C A 492.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=39;ExcessHet=3.0103;FS=4.449;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.563;QD=12.63;ReadPosRankSum=-0.591;SOR=0.070 GT:AD:DD:DF:DP:GQ:PL 0/1:25,14:34.87,2.95:0.9007,0.0993:39:99:500,0,964 -20 10098219 . TATATATA T 325.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.147;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-0.205;QD=15.50;ReadPosRankSum=0.427;SOR=0.465 GT:AD:DD:DF:DP:GQ:PL 0/1:12,9:11,9:0.5455,0.4545:21:99:333,0,461 -20 10098237 . A T 265.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-1.885;QD=18.97;ReadPosRankSum=1.118;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:7,7:7,7:0.4999,0.5001:14:99:273,0,273 -20 10098265 . T C 154.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQRankSum=-1.834;QD=25.77;ReadPosRankSum=0.842;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 0/1:2,4:2.97,1.93:0.5753,0.4247:6:59:162,0,59 -20 10098885 . C CA 463.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-4.449;QD=14.95;ReadPosRankSum=-0.954;SOR=0.518 GT:AD:DD:DF:DP:GQ:PL 0/1:17,14:12.36,18.8:0.4029,0.5971:31:99:471,0,572 -20 10098945 . T C 428.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;DP=22;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-2.504;QD=19.48;ReadPosRankSum=1.038;SOR=2.368 GT:AD:DD:DF:DP:GQ:PL 0/1:9,13:0.56,19.41:0.071,0.929:22:99:436,0,248 -20 10098987 . C T 400.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.127;DP=25;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-2.734;QD=16.69;ReadPosRankSum=0.436;SOR=2.925 GT:AD:DD:DF:DP:GQ:PL 0/1:11,13:13.59,10.08:0.5682,0.4318:24:99:408,0,350 -20 10099029 . T C 355.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;DP=30;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-3.731;QD=12.26;ReadPosRankSum=-1.224;SOR=1.609 GT:AD:DD:DF:DP:GQ:PL 0/1:19,10:25.99,0.65:0.9422,0.0578:29:99:363,0,768 -20 10099034 . C A 355.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DP=29;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-3.731;QD=12.26;ReadPosRankSum=-1.850;SOR=1.609 GT:AD:DD:DF:DP:GQ:PL 0/1:19,10:18.71,10.16:0.6384,0.3616:29:99:363,0,768 -20 10099044 . A C 355.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.81;MQRankSum=-4.533;QD=12.26;ReadPosRankSum=-2.207;SOR=0.892 GT:AD:DD:DF:DP:GQ:PL 0/1:19,10:18.72,9.15:0.6602,0.3398:29:99:363,0,768 -20 10099046 . T C 325.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-4.418;QD=13.57;ReadPosRankSum=-2.297;SOR=0.515 GT:AD:DD:DF:DP:GQ:PL 0/1:15,9:17.83,6.12:0.7256,0.2744:24:99:333,0,603 -20 10099055 . T C 277.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.20;MQRankSum=-4.179;QD=11.11;ReadPosRankSum=-1.970;SOR=0.770 GT:AD:DD:DF:DP:GQ:PL 0/1:17,8:1.49,18.5:0.1131,0.8869:25:99:285,0,673 -20 10099079 . C T 137.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=30;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=-2.614;QD=4.59;ReadPosRankSum=0.969;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 0/1:24,6:17.11,12.55:0.572,0.428:30:99:145,0,886 -20 10099111 . T TTTTGTTTG 686.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=52;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-0.973;QD=16.35;ReadPosRankSum=-1.860;SOR=0.967 GT:AD:DD:DF:DP:GQ:PL 0/1:23,19:1.81,38.05:0.0671,0.9329:42:99:694,0,802 -20 10099140 . G T 1026.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=64;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-2.469;QD=16.56;ReadPosRankSum=0.846;SOR=1.114 GT:AD:DD:DF:DP:GQ:PL 0/1:30,32:2.81,55.06:0.0637,0.9363:62:99:1034,0,931 -20 10099190 . G T 1055.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-1.711;QD=16.24;ReadPosRankSum=-1.260;SOR=0.776 GT:AD:DD:DF:DP:GQ:PL 0/1:33,32:33.01,31.99:0.5076,0.4924:65:99:1063,0,1154 -20 10099220 . A G 598.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;DP=47;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-2.596;QD=13.30;ReadPosRankSum=0.629;SOR=0.519 GT:AD:DD:DF:DP:GQ:PL 0/1:25,20:25.13,19.87:0.5559,0.4441:45:99:606,0,873 -20 10099250 . G A 720.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.170;DP=39;ExcessHet=3.0103;FS=7.195;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-2.272;QD=19.48;ReadPosRankSum=0.583;SOR=0.162 GT:AD:DD:DF:DP:GQ:PL 0/1:16,21:15.87,21.13:0.4326,0.5674:37:99:728,0,424 -20 10099535 . G A 1356.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.034;DP=68;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-1.418;QD=20.87;ReadPosRankSum=-0.777;SOR=0.408 GT:AD:DD:DF:DP:GQ:PL 0/1:26,39:24.12,38.94:0.3861,0.6139:65:99:1364,0,686 -20 10099565 . C T 1367.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.595;DP=70;ExcessHet=3.0103;FS=8.736;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.266;QD=19.82;ReadPosRankSum=1.225;SOR=0.191 GT:AD:DD:DF:DP:GQ:PL 0/1:31,38:29.14,37.92:0.4364,0.5636:69:99:1375,0,994 -20 10099755 . C T 1119.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DP=66;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.022;QD=17.23;ReadPosRankSum=-0.230;SOR=0.446 GT:AD:DD:DF:DP:GQ:PL 0/1:33,32:33.23,31.7:0.5114,0.4886:65:99:1127,0,1148 -20 10099832 . A G 1094.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;DP=75;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=0.869;QD=15.20;ReadPosRankSum=-1.023;SOR=0.871 GT:AD:DD:DF:DP:GQ:PL 0/1:39,33:38.96,33.04:0.54,0.46:72:99:1102,0,1430 +20 10000117 . C T 926.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;DP=66;ExcessHet=0.0000;FS=11.007;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.913;QD=14.48;ReadPosRankSum=-0.223;SOR=1.538 GT:AD:DD:DF:DP:GQ:PL 0/1:36,28:36,28:0.5607,0.4393:64:99:934,0,1248 +20 10000211 . C T 962.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;DP=54;ExcessHet=0.0000;FS=5.587;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.057;QD=18.16;ReadPosRankSum=0.703;SOR=0.944 GT:AD:DD:DF:DP:GQ:PL 0/1:26,27:26,27:0.4909,0.5091:53:99:970,0,906 +20 10000439 . T G 2819.06 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.86;QD=25.36;SOR=1.236 GT:AD:DD:DF:DP:GQ:PL 1/1:0,80:0,79.99:0.0122,0.9878:80:99:2833,240,0 +20 10000598 . T A 1956.06 . AC=2;AF=1.00;AN=2;DP=51;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.45;QD=28.73;SOR=1.225 GT:AD:DD:DF:DP:GQ:PL 1/1:0,49:0,49:0.0196,0.9804:49:99:1970,147,0 +20 10000694 . G A 1029.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;DP=87;ExcessHet=0.0000;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=48.86;MQRankSum=-5.114;QD=12.56;ReadPosRankSum=0.657;SOR=0.566 GT:AD:DD:DF:DP:GQ:PL 0/1:45,37:63.36,0.41:0.9786,0.0214:82:99:1037,0,1601 +20 10000758 . T A 3853.06 . AC=2;AF=1.00;AN=2;DP=97;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.51;QD=30.97;SOR=0.802 GT:AD:DD:DF:DP:GQ:PL 1/1:0,95:0,92.83:0.0106,0.9894:95:99:3867,286,0 +20 10001019 . T G 671.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;DP=75;ExcessHet=0.0000;FS=3.406;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-7.498;QD=10.33;ReadPosRankSum=-0.925;SOR=0.665 GT:AD:DD:DF:DP:GQ:PL 0/1:39,26:40.1,24.75:0.6148,0.3852:65:99:679,0,1426 +20 10001298 . T A 2932.06 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.93;QD=27.24;SOR=0.963 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,73:0.0133,0.9867:73:99:2946,220,0 +20 10001436 . A AAGGCT 2325.03 . AC=2;AF=1.00;AN=2;DP=58;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.22;QD=28.20;SOR=3.014 GT:AD:DD:DF:DP:GQ:PL 1/1:0,52:0.01,52.26:0.0186,0.9814:52:99:2339,156,0 +20 10001474 . C T 2655.06 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.87;QD=25.00;SOR=1.516 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,73:0.0133,0.9867:73:99:2669,219,0 +20 10001617 . C A 1752.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DP=105;ExcessHet=0.0000;FS=13.163;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=1.373;QD=17.02;ReadPosRankSum=-0.280;SOR=1.346 GT:AD:DD:DF:DP:GQ:PL 0/1:52,51:51.82,50.16:0.508,0.492:103:99:1760,0,1781 +20 10001628 . G A 3913.06 . AC=2;AF=1.00;AN=2;DP=98;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.19;QD=29.56;SOR=1.053 GT:AD:DD:DF:DP:GQ:PL 1/1:0,95:0,93.97:0.0104,0.9896:95:99:3927,285,0 +20 10001661 . T C 3621.06 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.13;QD=30.62;SOR=1.112 GT:AD:DD:DF:DP:GQ:PL 1/1:0,83:0,81.97:0.0119,0.9881:83:99:3635,249,0 +20 10001670 . T G 3688.06 . AC=2;AF=1.00;AN=2;DP=86;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.60;QD=28.17;SOR=0.897 GT:AD:DD:DF:DP:GQ:PL 1/1:0,84:0,83.98:0.0116,0.9884:84:99:3702,253,0 +20 10002058 . T G 2978.06 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.931;DP=79;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQRankSum=3.068;QD=26.80;ReadPosRankSum=0.624;SOR=0.776 GT:AD:DD:DF:DP:GQ:PL 1/1:1,74:0,73.98:0.0132,0.9868:75:99:2992,216,0 +20 10002099 . C T 1215.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=68;ExcessHet=0.0000;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-0.850;QD=18.70;ReadPosRankSum=0.173;SOR=0.375 GT:AD:DD:DF:DP:GQ:PL 0/1:27,38:27,35:0.4375,0.5625:65:99:1223,0,844 +20 10002138 . C G 2458.06 . AC=2;AF=1.00;AN=2;DP=57;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.64;QD=26.00;SOR=0.765 GT:AD:DD:DF:DP:GQ:PL 1/1:0,56:0,54:0.0179,0.9821:56:99:2472,169,0 +20 10002142 . G C 2422.06 . AC=2;AF=1.00;AN=2;DP=56;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.08;QD=30.02;SOR=0.804 GT:AD:DD:DF:DP:GQ:PL 1/1:0,55:0,53:0.0182,0.9818:55:99:2436,166,0 +20 10002458 . G GTTT 2154.96 . AC=2;AF=1.00;AN=2;DP=65;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.67;QD=31.98;SOR=2.303 GT:AD:DD:DF:DP:GQ:PL 1/1:0,56:0.02,50.11:0.0196,0.9804:56:99:2090,167,0 +20 10002470 . C T 2537.06 . AC=2;AF=1.00;AN=2;DP=68;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.92;QD=27.51;SOR=0.859 GT:AD:DD:DF:DP:GQ:PL 1/1:0,63:0.01,59.77:0.0163,0.9837:63:99:2551,189,0 +20 10002625 . G T 2680.06 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.08;QD=29.11;SOR=1.127 GT:AD:DD:DF:DP:GQ:PL 1/1:0,64:0,64:0.0152,0.9848:64:99:2694,193,0 +20 10003021 . C T 2398.06 . AC=2;AF=1.00;AN=2;DP=63;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.04;QD=28.08;SOR=1.071 GT:AD:DD:DF:DP:GQ:PL 1/1:0,60:0,60:0.0161,0.9839:60:99:2412,181,0 +20 10003358 . A C 1475.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;DP=91;ExcessHet=0.0000;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.011;QD=16.58;ReadPosRankSum=-1.355;SOR=0.572 GT:AD:DD:DF:DP:GQ:PL 0/1:45,44:44.9,44.1:0.5044,0.4956:89:99:1483,0,1477 +20 10003651 . T C 3635.06 . AC=2;AF=1.00;AN=2;DP=98;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.24;QD=23.23;SOR=1.511 GT:AD:DD:DF:DP:GQ:PL 1/1:0,93:0,92.99:0.0105,0.9895:93:99:3649,279,0 +20 10003692 . A G 2624.06 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.48;QD=29.03;SOR=1.352 GT:AD:DD:DF:DP:GQ:PL 1/1:0,68:0,68:0.0143,0.9857:68:99:2638,205,0 +20 10003832 . G A 2720.06 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.82;QD=30.67;SOR=1.473 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,66:0.0147,0.9853:66:99:2734,199,0 +20 10004094 . A C 1840.06 . AC=2;AF=1.00;AN=2;DP=55;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.62;QD=34.72;SOR=1.524 GT:AD:DD:DF:DP:GQ:PL 1/1:0,53:0.01,50.97:0.019,0.981:53:99:1854,157,0 +20 10004147 . A G 1852.06 . AC=2;AF=1.00;AN=2;DP=54;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.19;QD=26.61;SOR=1.136 GT:AD:DD:DF:DP:GQ:PL 1/1:0,52:0,49.99:0.0193,0.9807:52:99:1866,156,0 +20 10004193 . G T 937.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;DP=54;ExcessHet=0.0000;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=3.385;QD=18.39;ReadPosRankSum=1.724;SOR=0.941 GT:AD:DD:DF:DP:GQ:PL 0/1:23,28:20.98,25.86:0.45,0.55:51:99:945,0,776 +20 10004222 . C CA 42.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=69;ExcessHet=0.0000;FS=3.221;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-2.220;QD=0.95;ReadPosRankSum=0.198;SOR=0.932 GT:AD:DD:DF:DP:GQ:PL 0/1:35,10:35.85,8.36:0.7975,0.2025:45:50:50,0,923 +20 10004223 . A AG 77.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=69;ExcessHet=0.0000;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=2.260;QD=1.62;ReadPosRankSum=0.060;SOR=0.504 GT:AD:DD:DF:DP:GQ:PL 0/1:36,12:35.14,11.16:0.7483,0.2517:48:85:85,0,983 +20 10004351 . C G 2770.06 . AC=2;AF=1.00;AN=2;DP=71;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.05;QD=29.20;SOR=0.874 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0,69:0.0141,0.9859:70:99:2784,211,0 +20 10004389 . T G 2509.06 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.62;QD=28.55;SOR=1.143 GT:AD:DD:DF:DP:GQ:PL 1/1:0,62:0,62:0.0156,0.9844:62:99:2523,187,0 +20 10004610 . A C 3640.06 . AC=2;AF=1.00;AN=2;DP=93;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.75;QD=34.42;SOR=0.761 GT:AD:DD:DF:DP:GQ:PL 1/1:0,89:0,88.99:0.011,0.989:89:99:3654,267,0 +20 10004725 . A G 972.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;DP=67;ExcessHet=0.0000;FS=15.830;MLEAC=1;MLEAF=0.500;MQ=55.04;MQRankSum=3.008;QD=14.96;ReadPosRankSum=2.087;SOR=0.605 GT:AD:DD:DF:DP:GQ:PL 0/1:35,30:35,29:0.5455,0.4545:65:99:980,0,1168 +20 10004769 . TAAAACTATGC T 1011.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=80;ExcessHet=0.0000;FS=3.758;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-6.625;QD=15.81;ReadPosRankSum=1.879;SOR=1.306 GT:AD:DD:DF:DP:GQ:PL 0/1:37,27:37.98,27.79:0.5752,0.4248:64:99:1019,0,1471 +20 10004874 . A C 3617.06 . AC=2;AF=1.00;AN=2;DP=90;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.35;QD=28.53;SOR=1.286 GT:AD:DD:DF:DP:GQ:PL 1/1:0,87:0,86.99:0.0112,0.9888:87:99:3631,261,0 +20 10004887 . A G 1344.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=90;ExcessHet=0.0000;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.067;QD=15.82;ReadPosRankSum=-1.114;SOR=0.984 GT:AD:DD:DF:DP:GQ:PL 0/1:45,40:45,40:0.5288,0.4712:85:99:1352,0,1542 +20 10005010 . C T 2949.06 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.68;QD=27.23;SOR=1.226 GT:AD:DD:DF:DP:GQ:PL 1/1:0,72:0,72:0.0135,0.9865:72:99:2963,217,0 +20 10005427 . C T 2229.06 . AC=2;AF=1.00;AN=2;DP=60;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.62;QD=29.52;SOR=0.729 GT:AD:DD:DF:DP:GQ:PL 1/1:0,55:0,54.99:0.0176,0.9824:55:99:2243,165,0 +20 10005499 . A G 3068.06 . AC=2;AF=1.00;AN=2;DP=78;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.47;SOR=1.121 GT:AD:DD:DF:DP:GQ:PL 1/1:0,76:0,75:0.013,0.987:76:99:3082,229,0 +20 10005587 . A G 1250.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;DP=76;ExcessHet=0.0000;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.972;QD=17.37;ReadPosRankSum=0.248;SOR=0.848 GT:AD:DD:DF:DP:GQ:PL 0/1:36,36:35.89,36.1:0.4986,0.5014:72:99:1258,0,1236 +20 10005723 . A G 3077.06 . AC=2;AF=1.00;AN=2;DP=88;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.79;QD=32.91;SOR=0.947 GT:AD:DD:DF:DP:GQ:PL 1/1:0,86:0,85.99:0.0114,0.9886:86:99:3091,258,0 +20 10006291 . G A 999.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=85;ExcessHet=0.0000;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-1.081;QD=11.90;ReadPosRankSum=-1.447;SOR=0.659 GT:AD:DD:DF:DP:GQ:PL 0/1:53,31:53,31:0.6279,0.3721:84:99:1007,0,1905 +20 10006404 . A C 2943.06 . AC=2;AF=1.00;AN=2;DP=83;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.22;QD=31.31;SOR=1.432 GT:AD:DD:DF:DP:GQ:PL 1/1:0,76:0,76:0.0128,0.9872:76:99:2957,228,0 +20 10006682 . T A 2889.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.44;QD=31.45;SOR=1.179 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,72.99:0.0133,0.9867:73:99:2903,219,0 +20 10006819 . AAAAC A 2554.03 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.06;QD=33.27;SOR=0.762 GT:AD:DD:DF:DP:GQ:PL 1/1:0,58:0.01,58.98:0.0166,0.9834:58:99:2568,176,0 +20 10007150 . G C 690.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DP=64;ExcessHet=0.0000;FS=5.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.077;SOR=0.746 GT:AD:DD:DF:DP:GQ:PL 0/1:38,25:38.15,24.84:0.6024,0.3976:63:99:698,0,1479 +20 10007175 . C T 1371.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;DP=63;ExcessHet=0.0000;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=1.319;QD=22.49;ReadPosRankSum=-1.213;SOR=0.434 GT:AD:DD:DF:DP:GQ:PL 0/1:23,38:23,38:0.3809,0.6191:61:99:1379,0,780 +20 10007352 . C T 2779.06 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;QD=31.26;SOR=1.054 GT:AD:DD:DF:DP:GQ:PL 1/1:0,69:0,69:0.0141,0.9859:69:99:2793,208,0 +20 10007531 . A G 2935.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.75;QD=27.76;SOR=1.577 GT:AD:DD:DF:DP:GQ:PL 1/1:0,72:0,72:0.0135,0.9865:72:99:2949,217,0 +20 10007980 . A C 3539.06 . AC=2;AF=1.00;AN=2;DP=92;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.70;QD=29.09;SOR=0.990 GT:AD:DD:DF:DP:GQ:PL 1/1:0,90:0,89.99:0.0109,0.9891:90:99:3553,270,0 +20 10008029 . T TA 2010.03 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DP=97;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.11;MQRankSum=0.651;QD=26.10;ReadPosRankSum=-1.357;SOR=0.774 GT:AD:DD:DF:DP:GQ:PL 1/1:3,74:2.93,74.32:0.0496,0.9504:77:99:2024,145,0 +20 10008146 . TA T 2165.03 . AC=2;AF=1.00;AN=2;DP=77;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.56;QD=30.93;SOR=0.874 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0,69.09:0.0141,0.9859:70:99:2179,211,0 +20 10008221 . T C 3239.06 . AC=2;AF=1.00;AN=2;DP=83;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;QD=26.08;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 1/1:0,80:0,79.99:0.0122,0.9878:80:99:3253,240,0 +20 10008458 . T G 2669.06 . AC=2;AF=1.00;AN=2;DP=72;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.76;QD=33.85;SOR=0.980 GT:AD:DD:DF:DP:GQ:PL 1/1:0,69:0,68.99:0.0141,0.9859:69:99:2683,207,0 +20 10008742 . G T 736.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.893;DP=50;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.07;MQRankSum=-1.502;QD=15.03;ReadPosRankSum=0.200;SOR=0.741 GT:AD:DD:DF:DP:GQ:PL 0/1:23,26:5.39,39.66:0.1357,0.8643:49:99:744,0,580 +20 10008758 . C CA 707.49 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DP=51;ExcessHet=0.0000;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=37.72;MQRankSum=-0.875;QD=18.62;ReadPosRankSum=-0.262;SOR=0.405 GT:AD:DD:DF:DP:GQ:PL 1/1:4,34:0.22,38.5:0.03,0.97:38:10:721,10,0 +20 10008921 . C CA 283.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=60;ExcessHet=0.0000;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-1.306;QD=8.10;ReadPosRankSum=-0.017;SOR=0.644 GT:AD:DD:DF:DP:GQ:PL 0/1:18,17:17.38,15.82:0.5221,0.4779:35:99:291,0,366 +20 10008948 . TA T 2091.03 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DP=56;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQRankSum=1.946;QD=27.08;ReadPosRankSum=0.884;SOR=0.721 GT:AD:DD:DF:DP:GQ:PL 1/1:1,53:0.01,51.22:0.019,0.981:54:99:2105,117,0 +20 10008952 . CACACACACACA C,CCACACACACA 1700.02 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.963;DP=63;ExcessHet=0.0000;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.23;MQRankSum=1.976;QD=25.42;ReadPosRankSum=0.868;SOR=1.112 GT:AD:DD:DF:DP:GQ:PL 1/2:1,17,18:0.07,15.27,16.5:0.0308,0.4668,0.5024:36:99:1717,539,803,595,0,533 +20 10009227 . A G 1390.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DP=63;ExcessHet=0.0000;FS=9.110;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=1.428;QD=22.43;ReadPosRankSum=-1.159;SOR=0.281 GT:AD:DD:DF:DP:GQ:PL 0/1:23,39:22,38:0.3709,0.6291:62:99:1398,0,740 +20 10009246 . A G 3017.06 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.68;QD=27.65;SOR=0.887 GT:AD:DD:DF:DP:GQ:PL 1/1:0,77:0,75:0.013,0.987:77:99:3031,231,0 +20 10009400 . T A 3013.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.804 GT:AD:DD:DF:DP:GQ:PL 1/1:0,74:0,74:0.0132,0.9868:74:99:3027,223,0 +20 10009512 . C G 3054.06 . AC=2;AF=1.00;AN=2;DP=80;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.53;QD=30.56;SOR=1.223 GT:AD:DD:DF:DP:GQ:PL 1/1:0,77:0,76.99:0.0127,0.9873:77:99:3068,231,0 +20 10009719 . A G 1901.06 . AC=2;AF=1.00;AN=2;DP=65;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.71;QD=33.35;SOR=1.047 GT:AD:DD:DF:DP:GQ:PL 1/1:0,57:0.01,56.97:0.017,0.983:57:99:1915,170,0 +20 10009795 . A G 1895.06 . AC=2;AF=1.00;AN=2;DP=49;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.62;QD=33.63;SOR=1.514 GT:AD:DD:DF:DP:GQ:PL 1/1:0,47:0.01,46.85:0.0206,0.9794:47:99:1909,141,0 +20 10009842 . G GAA 562.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=52;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-0.936;QD=16.07;ReadPosRankSum=1.757;SOR=0.602 GT:AD:DD:DF:DP:GQ:PL 0/1:19,16:19.34,14.65:0.5651,0.4349:35:99:570,0,691 +20 10009844 . G A 683.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;DP=54;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=0.975;QD=19.53;ReadPosRankSum=-2.419;SOR=0.793 GT:AD:DD:DF:DP:GQ:PL 0/1:16,19:14.68,19.38:0.4349,0.5651:35:99:691,0,585 +20 10009871 . A G 679.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=62;ExcessHet=0.0000;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=1.336;QD=18.37;ReadPosRankSum=0.840;SOR=0.631 GT:AD:DD:DF:DP:GQ:PL 0/1:18,19:16.46,20:0.4539,0.5461:37:99:687,0,593 +20 10009875 . A G,AGGGAGG 2389.06 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.378;DP=58;ExcessHet=0.0000;FS=6.463;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.44;MQRankSum=1.413;QD=30.55;ReadPosRankSum=1.373;SOR=0.461 GT:AD:DD:DF:DP:GQ:PL 1/2:2,15,14:0.11,16.06,14.02:0.0334,0.514,0.4525:31:99:2406,645,532,697,0,574 +20 10009879 . A G 2259.06 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=53;ExcessHet=0.0000;FS=8.605;MLEAC=2;MLEAF=1.00;MQ=50.48;MQRankSum=1.681;QD=32.62;ReadPosRankSum=1.113;SOR=1.198 GT:AD:DD:DF:DP:GQ:PL 1/1:2,51:0.04,50.39:0.0198,0.9802:53:99:2273,150,0 +20 10009883 . A G 2166.06 . AC=2;AF=1.00;AN=2;DP=52;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.81;QD=29.33;SOR=1.755 GT:AD:DD:DF:DP:GQ:PL 1/1:0,49:15.8,24.8:0.3944,0.6056:49:99:2180,147,0 +20 10010393 . T G 1485.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.351;DP=79;ExcessHet=0.0000;FS=11.600;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.284;QD=18.81;ReadPosRankSum=-1.738;SOR=0.606 GT:AD:DD:DF:DP:GQ:PL 0/1:36,43:35.88,43.12:0.4553,0.5447:79:99:1493,0,1230 +20 10010536 . G GA 2455.03 . AC=2;AF=1.00;AN=2;DP=92;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.74;QD=30.69;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 1/1:0,80:0,76.16:0.0128,0.9872:80:99:2469,240,0 +20 10010766 . T G 2426.06 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=35.36;SOR=0.818 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,66:0.0147,0.9853:66:99:2440,199,0 +20 10010832 . T C 2966.06 . AC=2;AF=1.00;AN=2;DP=76;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.51;QD=34.30;SOR=1.091 GT:AD:DD:DF:DP:GQ:PL 1/1:0,75:0,75:0.013,0.987:75:99:2980,226,0 +20 10011075 . C T 1346.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.364;DP=86;ExcessHet=0.0000;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-1.036;SOR=0.968 GT:AD:DD:DF:DP:GQ:PL 0/1:44,39:43.91,39.07:0.5285,0.4715:83:99:1354,0,1333 +20 10011309 . T C 2707.06 . AC=2;AF=1.00;AN=2;DP=80;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.00;SOR=1.223 GT:AD:DD:DF:DP:GQ:PL 1/1:0,77:0,76.99:0.0127,0.9873:77:99:2721,231,0 +20 10011517 . GA G 519.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DP=99;ExcessHet=0.0000;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=2.041;QD=6.84;ReadPosRankSum=0.603;SOR=0.412 GT:AD:DD:DF:DP:GQ:PL 0/1:46,30:46.44,29.73:0.6069,0.3931:76:99:527,0,876 +20 10011666 . C T 2976.06 . AC=2;AF=1.00;AN=2;DP=74;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.06;QD=30.82;SOR=1.103 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,73:0.0133,0.9867:73:99:2990,220,0 +20 10011939 . C T 2528.06 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.55;QD=29.27;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 1/1:0,62:2.8,55.48:0.063,0.937:62:99:2542,187,0 +20 10012021 . CA C 2000.03 . AC=2;AF=1.00;AN=2;DP=71;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.12;QD=30.30;SOR=1.196 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,65.06:0.0149,0.9851:66:99:2014,198,0 +20 10012362 . G T 850.06 . AC=2;AF=1.00;AN=2;DP=25;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.31;QD=35.92;SOR=4.003 GT:AD:DD:DF:DP:GQ:PL 1/1:0,23:1.01,20.52:0.0853,0.9147:23:69:864,69,0 +20 10012384 . T C 250.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;DP=18;ExcessHet=0.0000;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=53.38;MQRankSum=-0.811;QD=13.92;ReadPosRankSum=0.800;SOR=0.044 GT:AD:DD:DF:DP:GQ:PL 0/1:10,8:11.43,5.87:0.6438,0.3562:18:99:258,0,355 +20 10012387 . T C 548.06 . AC=2;AF=1.00;AN=2;DP=18;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.38;QD=32.24;SOR=3.383 GT:AD:DD:DF:DP:GQ:PL 1/1:0,17:1.07,14.46:0.1182,0.8818:17:50:562,50,0 +20 10012479 . A G 589.06 . AC=2;AF=1.00;AN=2;DP=18;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.29;QD=34.65;SOR=0.804 GT:AD:DD:DF:DP:GQ:PL 1/1:0,17:0.01,15.98:0.0561,0.9439:17:50:603,50,0 +20 10012498 . C G 436.06 . AC=2;AF=1.00;AN=2;DP=10;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.25;QD=29.63;SOR=1.609 GT:AD:DD:DF:DP:GQ:PL 1/1:0,10:2.78,5.26:0.3766,0.6234:10:30:450,30,0 +20 10012518 . T C 466.06 . AC=2;AF=1.00;AN=2;DP=12;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.58;QD=28.76;SOR=1.270 GT:AD:DD:DF:DP:GQ:PL 1/1:0,11:1.22,9.76:0.1708,0.8292:11:33:480,33,0 +20 10012521 . C T 92.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=12;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.86;MQRankSum=-0.376;QD=7.72;ReadPosRankSum=2.405;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:8,4:8.13,3.85:0.6529,0.3471:12:99:100,0,221 +20 10012570 . G GCA 481.02 . AC=2;AF=1.00;AN=2;DP=11;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.52;QD=29.94;SOR=3.442 GT:AD:DD:DF:DP:GQ:PL 1/1:0,11:0.44,5.97:0.1712,0.8288:11:33:495,33,0 +20 10012572 . GT G 481.02 . AC=2;AF=1.00;AN=2;DP=12;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.60;QD=31.54;SOR=3.442 GT:AD:DD:DF:DP:GQ:PL 1/1:0,11:0.44,5.98:0.1712,0.8288:11:33:495,33,0 +20 10012631 . C CG 514.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=21;ExcessHet=0.0000;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-1.670;QD=24.50;ReadPosRankSum=-1.777;SOR=0.048 GT:AD:DD:DF:DP:GQ:PL 0/1:8,13:7.08,4.33:0.6023,0.3977:21:99:522,0,297 +20 10012636 . G C 548.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;DP=22;ExcessHet=0.0000;FS=5.959;MLEAC=1;MLEAF=0.500;MQ=48.93;MQRankSum=-1.513;QD=24.94;ReadPosRankSum=-1.777;SOR=0.058 GT:AD:DD:DF:DP:GQ:PL 0/1:8,14:6.62,5.69:0.5325,0.4675:22:99:556,0,294 +20 10012714 . G C 1315.06 . AC=2;AF=1.00;AN=2;DP=36;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.52;QD=28.86;SOR=2.964 GT:AD:DD:DF:DP:GQ:PL 1/1:0,35:0,35:0.027,0.973:35:99:1329,105,0 +20 10012751 . T C 952.06 . AC=2;AF=1.00;AN=2;DP=31;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.73;QD=31.74;SOR=0.976 GT:AD:DD:DF:DP:GQ:PL 1/1:0,30:0.01,29.97:0.0315,0.9685:30:89:966,89,0 +20 10013119 . C T 1032.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;DP=61;ExcessHet=0.0000;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=51.43;MQRankSum=-1.089;QD=17.50;ReadPosRankSum=0.159;SOR=0.405 GT:AD:DD:DF:DP:GQ:PL 0/1:29,30:27.85,30.57:0.4774,0.5226:59:99:1040,0,936 +20 10013574 . G A 1071.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;DP=73;ExcessHet=0.0000;FS=7.109;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-0.271;QD=15.53;ReadPosRankSum=0.706;SOR=1.675 GT:AD:DD:DF:DP:GQ:PL 0/1:38,31:38.01,30.99:0.5494,0.4506:69:99:1079,0,1301 +20 10014990 . C CAT 1267.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;DP=89;ExcessHet=0.0000;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=3.260;QD=16.46;ReadPosRankSum=-0.311;SOR=0.429 GT:AD:DD:DF:DP:GQ:PL 0/1:38,39:38.13,39.18:0.4934,0.5066:77:99:1275,0,1247 +20 10015679 . C T 161.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=10;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.497;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:5,5:4,5:0.4547,0.5453:10:99:169,0,166 +20 10015761 . T C 365.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;DP=23;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=1.294;QD=16.62;ReadPosRankSum=1.805;SOR=0.352 GT:AD:DD:DF:DP:GQ:PL 0/1:9,13:13.95,6.5:0.6659,0.3341:22:99:373,0,284 +20 10018158 . G C 1660.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.213;DP=94;ExcessHet=0.0000;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.118;QD=18.87;ReadPosRankSum=1.179;SOR=0.834 GT:AD:DD:DF:DP:GQ:PL 0/1:40,48:39.95,48.04:0.455,0.545:88:99:1668,0,1165 +20 10018555 . G A 1588.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=84;ExcessHet=0.0000;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=0.815;SOR=0.627 GT:AD:DD:DF:DP:GQ:PL 0/1:35,45:35,45:0.439,0.561:80:99:1596,0,1211 +20 10019093 . A G 1265.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=73;ExcessHet=0.0000;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.073;QD=18.34;ReadPosRankSum=-0.252;SOR=0.665 GT:AD:DD:DF:DP:GQ:PL 0/1:33,36:32.88,36.11:0.4773,0.5227:69:99:1273,0,1104 +20 10020229 . G A 1559.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.792;DP=84;ExcessHet=0.0000;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.104;QD=19.02;ReadPosRankSum=-0.549;SOR=0.573 GT:AD:DD:DF:DP:GQ:PL 0/1:38,44:37.99,44.01:0.4642,0.5358:82:99:1567,0,1130 +20 10023689 . G A 1873.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;DP=82;ExcessHet=0.0000;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=1.352;QD=23.42;ReadPosRankSum=1.162;SOR=0.549 GT:AD:DD:DF:DP:GQ:PL 0/1:29,51:29,51:0.3658,0.6342:80:99:1881,0,946 +20 10024107 . C T 1715.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.770;DP=89;ExcessHet=0.0000;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.546;QD=19.95;ReadPosRankSum=0.148;SOR=0.823 GT:AD:DD:DF:DP:GQ:PL 0/1:38,48:37.85,48.14:0.4415,0.5585:86:99:1723,0,1086 +20 10024300 . C CTT 134.01 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=53;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-0.728;QD=8.38;ReadPosRankSum=-0.140;SOR=1.863 GT:AD:DD:DF:DP:GQ:PL 0/1:8,8:6.66,8.51:0.4463,0.5537:16:99:106,0,111 +20 10026357 . T C 1187.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DP=63;ExcessHet=0.0000;FS=8.911;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-0.148;QD=18.85;ReadPosRankSum=-0.076;SOR=0.722 GT:AD:DD:DF:DP:GQ:PL 0/1:28,35:27.99,35.01:0.446,0.554:63:99:1195,0,932 +20 10026794 . C T 1105.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;DP=56;ExcessHet=0.0000;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.719;QD=21.26;ReadPosRankSum=-0.533;SOR=0.428 GT:AD:DD:DF:DP:GQ:PL 0/1:19,33:19.12,32.87:0.3726,0.6274:52:99:1113,0,529 +20 10027234 . A ATTAG 1350.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=75;ExcessHet=0.0000;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-0.845;QD=19.57;ReadPosRankSum=-0.510;SOR=0.926 GT:AD:DD:DF:DP:GQ:PL 0/1:34,35:34.21,35.14:0.4935,0.5065:69:99:1358,0,1320 +20 10027868 . A G 1760.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.793;DP=91;ExcessHet=0.0000;FS=6.873;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.047;QD=19.56;ReadPosRankSum=1.872;SOR=0.937 GT:AD:DD:DF:DP:GQ:PL 0/1:44,46:44,46:0.4892,0.5108:90:99:1768,0,1671 +20 10027872 . A G 1745.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.491;DP=88;ExcessHet=0.0000;FS=8.704;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.065;QD=20.06;ReadPosRankSum=1.053;SOR=0.834 GT:AD:DD:DF:DP:GQ:PL 0/1:42,45:42,45:0.4831,0.5169:87:99:1753,0,1606 +20 10028867 . A ATG 1137.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DP=93;ExcessHet=0.0000;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=2.711;QD=16.02;ReadPosRankSum=0.630;SOR=0.336 GT:AD:DD:DF:DP:GQ:PL 0/1:32,39:32.6,37.8:0.4641,0.5359:71:99:1145,0,915 +20 10030188 . T A 1393.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=82;ExcessHet=0.0000;FS=9.186;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.013;QD=17.21;ReadPosRankSum=-0.553;SOR=1.105 GT:AD:DD:DF:DP:GQ:PL 0/1:42,39:42,39:0.5181,0.4819:81:99:1401,0,1524 +20 10031254 . A AT 1493.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=90;ExcessHet=0.0000;FS=9.250;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.017;QD=17.57;ReadPosRankSum=0.663;SOR=0.211 GT:AD:DD:DF:DP:GQ:PL 0/1:38,47:37.77,46.47:0.4496,0.5504:85:99:1501,0,1159 +20 10031342 . G A 1855.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;DP=93;ExcessHet=0.0000;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.866;QD=19.95;ReadPosRankSum=-0.012;SOR=0.955 GT:AD:DD:DF:DP:GQ:PL 0/1:41,52:40.99,50.01:0.4515,0.5485:93:99:1863,0,1375 +20 10031798 . G A 4311.06 . AC=2;AF=1.00;AN=2;DP=107;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.61;QD=29.41;SOR=0.900 GT:AD:DD:DF:DP:GQ:PL 1/1:0,104:0,104:0.0094,0.9906:104:99:4325,313,0 +20 10031827 . C T 2025.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.552;DP=115;ExcessHet=0.0000;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.945;QD=18.76;ReadPosRankSum=-1.396;SOR=0.382 GT:AD:DD:DF:DP:GQ:PL 0/1:52,56:52,56:0.4818,0.5182:108:99:2033,0,1798 +20 10032094 . G A 1241.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.488;DP=86;ExcessHet=0.0000;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.579;SOR=0.260 GT:AD:DD:DF:DP:GQ:PL 0/1:47,36:46.91,36.08:0.5637,0.4363:83:99:1249,0,1497 +20 10032413 . T G 890.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.142;DP=66;ExcessHet=0.0000;FS=10.444;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.065;QD=13.49;ReadPosRankSum=-1.003;SOR=1.293 GT:AD:DD:DF:DP:GQ:PL 0/1:35,31:35.01,30.99:0.5295,0.4705:66:99:898,0,1277 +20 10032882 . A T 1223.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.697;DP=76;ExcessHet=0.0000;FS=4.673;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.014;QD=16.32;ReadPosRankSum=0.626;SOR=0.338 GT:AD:DD:DF:DP:GQ:PL 0/1:39,36:39.01,35.99:0.5195,0.4805:75:99:1231,0,1406 +20 10032972 . C CAT 1152.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=67;ExcessHet=0.0000;FS=5.062;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.017;QD=18.30;ReadPosRankSum=-0.723;SOR=1.300 GT:AD:DD:DF:DP:GQ:PL 0/1:33,30:33.06,30.06:0.5231,0.4769:63:99:1160,0,1295 +20 10034306 . T C 803.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;DP=80;ExcessHet=0.0000;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=1.150;QD=10.72;ReadPosRankSum=0.539;SOR=0.685 GT:AD:DD:DF:DP:GQ:PL 0/1:46,29:46.17,28.82:0.6127,0.3873:75:99:811,0,1593 +20 10036930 . CGATAGCCCTAGCCCTAGATA C 1063.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=98;ExcessHet=0.0000;FS=11.152;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-4.048;QD=15.64;ReadPosRankSum=0.460;SOR=0.269 GT:AD:DD:DF:DP:GQ:PL 0/1:39,29:48.82,24.66:0.66,0.34:68:99:1071,0,1507 +20 10037037 . C T 1457.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.504;DP=88;ExcessHet=0.0000;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.193;QD=18.00;ReadPosRankSum=-1.609;SOR=0.495 GT:AD:DD:DF:DP:GQ:PL 0/1:39,42:37.42,42.54:0.4688,0.5312:81:99:1465,0,1124 +20 10037110 . T TGATA 2804.03 . AC=2;AF=1.00;AN=2;DP=84;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.01;QD=31.11;SOR=0.933 GT:AD:DD:DF:DP:GQ:PL 1/1:0,63:0.02,62.2:0.0158,0.9842:63:99:2818,189,0 +20 10037144 . T TGATAGATA 1847.03 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.21;QD=34.66;SOR=1.179 GT:AD:DD:DF:DP:GQ:PL 1/1:0,43:0.05,44.81:0.0223,0.9777:43:99:1861,127,0 +20 10037709 . A T 1024.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;DP=73;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.934;QD=14.43;ReadPosRankSum=0.040;SOR=0.608 GT:AD:DD:DF:DP:GQ:PL 0/1:39,32:39.12,31.88:0.5496,0.4504:71:99:1032,0,1354 +20 10039371 . T G 1345.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;DP=76;ExcessHet=0.0000;FS=6.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=0.391;SOR=1.031 GT:AD:DD:DF:DP:GQ:PL 0/1:34,40:34.01,39.99:0.4606,0.5394:74:99:1353,0,1194 +20 10040772 . C CT 2020.03 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.32;QD=28.86;SOR=0.811 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0,70.15:0.0139,0.9861:70:99:2034,210,0 +20 10040812 . AT A 2631.03 . AC=2;AF=1.00;AN=2;DP=83;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.21;QD=29.40;SOR=0.721 GT:AD:DD:DF:DP:GQ:PL 1/1:0,71:0,70.75:0.0138,0.9862:71:99:2645,214,0 +20 10040821 . T A 1192.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;DP=84;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-0.097;QD=15.29;ReadPosRankSum=-1.350;SOR=0.688 GT:AD:DD:DF:DP:GQ:PL 0/1:38,40:37.35,39.76:0.4848,0.5152:78:99:1200,0,1099 +20 10041304 . C T 2780.06 . AC=2;AF=1.00;AN=2;DP=68;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.39;QD=36.76;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 1/1:0,68:0.06,67:0.0153,0.9847:68:99:2794,204,0 +20 10041701 . A ATATG 1434.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=80;ExcessHet=0.0000;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=0.340;QD=24.32;ReadPosRankSum=-0.023;SOR=0.260 GT:AD:DD:DF:DP:GQ:PL 0/1:9,50:7.42,50.46:0.1407,0.8593:59:57:1442,0,57 +20 10042319 . C T 2673.06 . AC=2;AF=1.00;AN=2;DP=69;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.06;QD=30.54;SOR=1.033 GT:AD:DD:DF:DP:GQ:PL 1/1:0,66:0,66:0.0147,0.9853:66:99:2687,199,0 +20 10042761 . A G 3568.06 . AC=2;AF=1.00;AN=2;DP=94;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=21.53;SOR=1.389 GT:AD:DD:DF:DP:GQ:PL 1/1:0,91:0,89.98:0.0109,0.9891:91:99:3582,272,0 +20 10042829 . A G 3070.06 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.77;QD=34.87;SOR=0.855 GT:AD:DD:DF:DP:GQ:PL 1/1:0,78:0,77:0.0127,0.9873:78:99:3084,235,0 +20 10043002 . A T 1308.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DP=89;ExcessHet=0.0000;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-0.035;SOR=0.434 GT:AD:DD:DF:DP:GQ:PL 0/1:48,38:47.99,38.01:0.5568,0.4432:86:99:1316,0,1658 +20 10044849 . A G 2106.06 . AC=2;AF=1.00;AN=2;DP=59;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.61;QD=31.04;SOR=1.316 GT:AD:DD:DF:DP:GQ:PL 1/1:0,59:0,58.98:0.0164,0.9836:59:99:2120,177,0 +20 10045078 . G T 3286.06 . AC=2;AF=1.00;AN=2;DP=84;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.78;QD=27.86;SOR=0.876 GT:AD:DD:DF:DP:GQ:PL 1/1:0,81:0,81:0.012,0.988:81:99:3300,244,0 +20 10045642 . G C 3122.06 . AC=2;AF=1.00;AN=2;DP=82;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;QD=34.17;SOR=0.821 GT:AD:DD:DF:DP:GQ:PL 1/1:0,81:0,80.34:0.0122,0.9878:81:99:3136,243,0 +20 10046178 . AAGAAAGAAAG A 2136.03 . AC=2;AF=1.00;AN=2;DP=63;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.77;QD=28.60;SOR=0.818 GT:AD:DD:DF:DP:GQ:PL 1/1:0,49:0.02,49.53:0.0197,0.9803:49:99:2150,149,0 +20 10046537 . A G 840.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.909;DP=57;ExcessHet=0.0000;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=0.395;QD=14.75;ReadPosRankSum=0.727;SOR=1.262 GT:AD:DD:DF:DP:GQ:PL 0/1:28,29:27.99,29:0.4914,0.5086:57:99:848,0,902 +20 10050828 . T C 1248.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;DP=91;ExcessHet=0.0000;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.892;QD=14.52;ReadPosRankSum=-0.140;SOR=0.521 GT:AD:DD:DF:DP:GQ:PL 0/1:49,37:48.92,37.07:0.5673,0.4327:86:99:1256,0,1768 +20 10051448 . T C 1155.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=71;ExcessHet=0.0000;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.404;QD=16.51;ReadPosRankSum=-0.705;SOR=0.302 GT:AD:DD:DF:DP:GQ:PL 0/1:35,35:34.99,35:0.5,0.5:70:99:1163,0,1150 +20 10052688 . C A 1083.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=83;ExcessHet=0.0000;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.870;QD=14.07;ReadPosRankSum=1.443;SOR=0.379 GT:AD:DD:DF:DP:GQ:PL 0/1:45,32:45,32:0.5823,0.4177:77:99:1091,0,1645 +20 10058022 . T C 996.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;DP=72;ExcessHet=0.0000;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.466;QD=14.66;ReadPosRankSum=0.018;SOR=0.849 GT:AD:DD:DF:DP:GQ:PL 0/1:36,32:36.12,31.88:0.5303,0.4697:68:99:1004,0,1261 +20 10062935 . C CA 123.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=89;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-1.502;QD=5.37;ReadPosRankSum=-1.113;SOR=0.743 GT:AD:DD:DF:DP:GQ:PL 0/1:13,10:9.88,12.14:0.453,0.547:23:99:131,0,101 +20 10067049 . TAAAAAAAA T,TA 633.02 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.106;DP=73;ExcessHet=0.0000;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.73;MQRankSum=-0.429;QD=28.77;ReadPosRankSum=-1.226;SOR=0.941 GT:AD:DD:DF:DP:GQ:PL 1/2:2,11,9:2.14,8.73,9.99:0.1315,0.4079,0.4606:22:99:650,163,340,134,0,106 +20 10067090 . C A 2019.06 . AC=2;AF=1.00;AN=2;DP=56;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.57;QD=25.57;SOR=0.729 GT:AD:DD:DF:DP:GQ:PL 1/1:0,55:0.26,41.87:0.0286,0.9714:55:99:2033,164,0 +20 10067264 . G A 2937.06 . AC=2;AF=1.00;AN=2;DP=73;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.37;QD=33.11;SOR=0.776 GT:AD:DD:DF:DP:GQ:PL 1/1:0,73:0,72.99:0.0133,0.9867:73:99:2951,219,0 +20 10067722 . A C 2161.06 . AC=2;AF=1.00;AN=2;DP=59;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.20;SOR=0.846 GT:AD:DD:DF:DP:GQ:PL 1/1:0,54:0,54:0.0179,0.9821:54:99:2175,163,0 +20 10068158 . GTGTATATATATA G 97.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=28;ExcessHet=0.0000;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=0.328;QD=13.94;ReadPosRankSum=0.524;SOR=0.061 GT:AD:DD:DF:DP:GQ:PL 0/1:3,4:2.57,4.63:0.3881,0.6119:7:57:105,0,57 +20 10068160 . GTATATATATATGTA G,* 56.01 . AC=1,1;AF=0.500,0.500;AN=2;DP=32;ExcessHet=0.0000;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.29;QD=9.33;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 1/2:0,2,4:0.09,2.37,4.67:0.1079,0.3328,0.5594:6:53:706,158,131,98,0,53 +20 10068981 . G A 2518.06 . AC=2;AF=1.00;AN=2;DP=65;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.49;SOR=0.941 GT:AD:DD:DF:DP:GQ:PL 1/1:0,61:0,60.97:0.0159,0.9841:61:99:2532,184,0 +20 10070602 . T C 2706.06 . AC=2;AF=1.00;AN=2;DP=76;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.78;QD=31.67;SOR=0.749 GT:AD:DD:DF:DP:GQ:PL 1/1:0,72:0,71.99:0.0135,0.9865:72:99:2720,216,0 +20 10070936 . T A 3646.06 . AC=2;AF=1.00;AN=2;DP=86;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.96;QD=29.53;SOR=0.846 GT:AD:DD:DF:DP:GQ:PL 1/1:0,82:0,82.06:0.0119,0.9881:82:99:3660,247,0 +20 10070938 . G GA 3680.03 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.07;QD=32.63;SOR=0.818 GT:AD:DD:DF:DP:GQ:PL 1/1:0,83:0,83.03:0.0118,0.9882:83:99:3694,250,0 +20 10071135 . C T 3272.06 . AC=2;AF=1.00;AN=2;DP=88;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.21;QD=30.36;SOR=1.003 GT:AD:DD:DF:DP:GQ:PL 1/1:0,79:0,79:0.0124,0.9876:79:99:3286,238,0 +20 10071187 . G A 3425.06 . AC=2;AF=1.00;AN=2;DP=85;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.73;QD=28.13;SOR=1.367 GT:AD:DD:DF:DP:GQ:PL 1/1:0,82:0,81.99:0.0119,0.9881:82:99:3439,246,0 +20 10071890 . T C 1989.06 . AC=2;AF=1.00;AN=2;DP=61;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.31;QD=34.90;SOR=0.728 GT:AD:DD:DF:DP:GQ:PL 1/1:0,57:0,57:0.017,0.983:57:99:2003,171,0 +20 10072505 . A G 2114.06 . AC=2;AF=1.00;AN=2;DP=67;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.03;SOR=0.822 GT:AD:DD:DF:DP:GQ:PL 1/1:0,64:0,63.97:0.0152,0.9848:64:99:2128,191,0 +20 10074187 . A G 3116.06 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.14;QD=27.97;SOR=0.881 GT:AD:DD:DF:DP:GQ:PL 1/1:0,79:0.01,78.59:0.0125,0.9875:79:99:3130,238,0 +20 10074240 . T C 3421.06 . AC=2;AF=1.00;AN=2;DP=89;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.79;QD=28.31;SOR=0.922 GT:AD:DD:DF:DP:GQ:PL 1/1:0,85:0.01,84.59:0.0116,0.9884:85:99:3435,255,0 +20 10074716 . G A 2415.06 . AC=2;AF=1.00;AN=2;DP=70;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;QD=35.21;SOR=1.214 GT:AD:DD:DF:DP:GQ:PL 1/1:0,64:0,63.99:0.0152,0.9848:64:99:2429,192,0 +20 10074806 . G A 2832.06 . AC=2;AF=1.00;AN=2;DP=75;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.38;QD=35.18;SOR=0.840 GT:AD:DD:DF:DP:GQ:PL 1/1:0,71:0,70.99:0.0137,0.9863:71:99:2846,213,0 +20 10075043 . T C 2420.06 . AC=2;AF=1.00;AN=2;DP=64;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.64;QD=29.59;SOR=1.107 GT:AD:DD:DF:DP:GQ:PL 1/1:0,61:0,61:0.0159,0.9841:61:99:2434,184,0 +20 10075168 . C T 3627.06 . AC=2;AF=1.00;AN=2;DP=91;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.37;QD=32.25;SOR=0.997 GT:AD:DD:DF:DP:GQ:PL 1/1:0,88:0,87.98:0.0111,0.9889:88:99:3641,264,0 +20 10075508 . GA G 1952.03 . AC=2;AF=1.00;AN=2;DP=81;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.11;QD=27.89;SOR=1.085 GT:AD:DD:DF:DP:GQ:PL 1/1:0,70:0.01,69.96:0.014,0.986:70:99:1966,210,0 +20 10076250 . A G 1128.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.386;DP=82;ExcessHet=0.0000;FS=7.546;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.423;QD=14.29;ReadPosRankSum=0.270;SOR=0.344 GT:AD:DD:DF:DP:GQ:PL 0/1:40,39:40.12,38.88:0.5076,0.4924:79:99:1136,0,1339 +20 10076339 . A G 1330.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=76;ExcessHet=0.0000;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.866;QD=18.48;ReadPosRankSum=1.015;SOR=0.446 GT:AD:DD:DF:DP:GQ:PL 0/1:32,40:39.3,31.4:0.5544,0.4456:72:99:1338,0,1035 +20 10076399 . G A 1828.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.154;DP=95;ExcessHet=0.0000;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-1.058;SOR=0.952 GT:AD:DD:DF:DP:GQ:PL 0/1:44,50:43.62,50.29:0.4652,0.5348:94:99:1836,0,1544 +20 10076989 . CA C,CAA 235.02 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.566;DP=82;ExcessHet=0.0000;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.29;MQRankSum=-0.507;QD=7.58;ReadPosRankSum=-0.608;SOR=0.653 GT:AD:DD:DF:DP:GQ:PL 1/2:7,17,7:7.54,14.16,6.48:0.2739,0.4863,0.2399:31:41:252,41,376,147,0,360 +20 10077752 . T C 1366.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.503;DP=83;ExcessHet=0.0000;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=-0.352;SOR=1.251 GT:AD:DD:DF:DP:GQ:PL 0/1:34,45:34.01,44.99:0.4322,0.5678:79:99:1374,0,1187 +20 10079476 . T G 31.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570;DP=55;ExcessHet=0.0000;FS=57.922;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-0.826;QD=0.72;ReadPosRankSum=1.533;SOR=4.970 GT:AD:DD:DF:DP:GQ:PL 0/1:33,11:32.75,10.85:0.7401,0.2599:44:39:39,0,1137 +20 10081750 . C A 1374.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DP=92;ExcessHet=0.0000;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.406;SOR=0.664 GT:AD:DD:DF:DP:GQ:PL 0/1:44,39:43.9,39.09:0.5283,0.4717:83:99:1382,0,1525 +20 10081800 . C T 1130.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=69;ExcessHet=0.0000;FS=11.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-2.622;SOR=0.143 GT:AD:DD:DF:DP:GQ:PL 0/1:35,33:34.93,33.07:0.5133,0.4867:68:99:1138,0,1222 +20 10082892 . C T 1727.06 . AC=2;AF=1.00;AN=2;DP=45;ExcessHet=0.0000;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;QD=34.86;SOR=0.883 GT:AD:DD:DF:DP:GQ:PL 1/1:0,44:0,43.99:0.0218,0.9782:44:99:1741,132,0 +20 10085211 . A T 1231.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DP=81;ExcessHet=0.0000;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.028;QD=16.21;ReadPosRankSum=-1.405;SOR=0.723 GT:AD:DD:DF:DP:GQ:PL 0/1:40,36:40,36:0.5257,0.4743:76:99:1239,0,1443 +20 10086110 . G A 1295.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;DP=83;ExcessHet=0.0000;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-0.680;QD=16.00;ReadPosRankSum=0.170;SOR=0.495 GT:AD:DD:DF:DP:GQ:PL 0/1:43,38:43,38:0.5301,0.4699:81:99:1303,0,1506 +20 10086283 . G T 1046.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;DP=86;ExcessHet=0.0000;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=1.889;SOR=0.529 GT:AD:DD:DF:DP:GQ:PL 0/1:52,32:52,32:0.6163,0.3837:84:99:1054,0,1771 +20 10086619 . T A 817.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=76;ExcessHet=0.0000;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.312;QD=11.68;ReadPosRankSum=-0.760;SOR=0.846 GT:AD:DD:DF:DP:GQ:PL 0/1:45,25:45,25:0.6389,0.3611:70:99:825,0,1603 +20 10086853 . G A 1023.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.915;DP=75;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-0.177;QD=14.02;ReadPosRankSum=-0.100;SOR=0.767 GT:AD:DD:DF:DP:GQ:PL 0/1:41,32:41.12,31.87:0.5617,0.4383:73:99:1031,0,1280 +20 10086954 . G A 1116.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=70;ExcessHet=0.0000;FS=4.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-0.534;SOR=1.185 GT:AD:DD:DF:DP:GQ:PL 0/1:34,34:34.09,33.9:0.5014,0.4986:68:99:1124,0,1051 +20 10087230 . A G 1863.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;DP=101;ExcessHet=0.0000;FS=3.860;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=1.707;QD=19.41;ReadPosRankSum=0.307;SOR=0.960 GT:AD:DD:DF:DP:GQ:PL 0/1:42,54:42,54:0.4388,0.5612:96:99:1871,0,1428 +20 10087394 . T G 1709.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;DP=85;ExcessHet=0.0000;FS=4.225;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=1.207;QD=20.35;ReadPosRankSum=0.885;SOR=0.436 GT:AD:DD:DF:DP:GQ:PL 0/1:35,49:35,49:0.4186,0.5814:84:99:1717,0,1186 +20 10087754 . T G 1403.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=87;ExcessHet=0.0000;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.166;QD=17.77;ReadPosRankSum=-0.378;SOR=0.596 GT:AD:DD:DF:DP:GQ:PL 0/1:37,42:37.02,40.98:0.4752,0.5248:79:99:1411,0,1236 +20 10087804 . C T 1640.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;DP=104;ExcessHet=0.0000;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.618;QD=16.41;ReadPosRankSum=0.341;SOR=0.369 GT:AD:DD:DF:DP:GQ:PL 0/1:50,50:49.78,50.2:0.4979,0.5021:100:99:1648,0,1511 +20 10087820 . C CAG 458.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;DP=103;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.422;QD=8.34;ReadPosRankSum=-0.019;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 0/1:37,18:38.59,18.7:0.6677,0.3323:55:99:466,0,1168 +20 10088063 . C T 1438.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DP=94;ExcessHet=0.0000;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.515;QD=15.47;ReadPosRankSum=0.285;SOR=1.053 GT:AD:DD:DF:DP:GQ:PL 0/1:49,44:48.71,44.28:0.5233,0.4767:93:99:1446,0,1403 +20 10088699 . C T 797.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DP=67;ExcessHet=0.0000;FS=16.952;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-3.140;QD=12.87;ReadPosRankSum=-1.456;SOR=1.914 GT:AD:DD:DF:DP:GQ:PL 0/1:36,26:35.82,26.14:0.5757,0.4243:62:99:805,0,1088 +20 10088730 . G A 993.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=57;ExcessHet=0.0000;FS=9.708;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-5.213;QD=17.74;ReadPosRankSum=0.581;SOR=1.011 GT:AD:DD:DF:DP:GQ:PL 0/1:30,26:29.8,26.16:0.5314,0.4686:56:99:1001,0,1152 +20 10088736 . A C 1102.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=60;ExcessHet=0.0000;FS=7.080;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-5.157;QD=18.38;ReadPosRankSum=0.573;SOR=0.850 GT:AD:DD:DF:DP:GQ:PL 0/1:31,29:30.79,29.17:0.5131,0.4869:60:99:1110,0,1194 +20 10088747 . A G 1132.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.877;DP=56;ExcessHet=0.0000;FS=9.708;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-4.881;QD=20.23;ReadPosRankSum=0.009;SOR=1.162 GT:AD:DD:DF:DP:GQ:PL 0/1:26,30:26.01,29.99:0.4656,0.5344:56:99:1140,0,995 +20 10088799 . G A 1039.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.503;DP=54;ExcessHet=0.0000;FS=10.098;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-2.498;QD=19.62;ReadPosRankSum=1.075;SOR=1.003 GT:AD:DD:DF:DP:GQ:PL 0/1:22,31:21.99,31.01:0.4181,0.5819:53:99:1047,0,617 +20 10088895 . C T 556.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;DP=43;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=0.260;QD=13.92;ReadPosRankSum=1.238;SOR=0.727 GT:AD:DD:DF:DP:GQ:PL 0/1:22,18:22.44,17.36:0.5608,0.4392:40:99:564,0,651 +20 10088968 . C CAAA 1205.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=77;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQRankSum=-5.145;QD=18.84;ReadPosRankSum=0.629;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:32,32:27.12,31.61:0.463,0.537:64:99:1213,0,1236 +20 10088980 . T C 1268.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;DP=74;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.42;MQRankSum=-5.018;QD=17.38;ReadPosRankSum=1.577;SOR=0.758 GT:AD:DD:DF:DP:GQ:PL 0/1:39,34:34.1,32.19:0.514,0.486:73:99:1276,0,1497 +20 10088985 . T C 1199.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DP=77;ExcessHet=0.0000;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=-5.248;QD=16.21;ReadPosRankSum=1.452;SOR=0.742 GT:AD:DD:DF:DP:GQ:PL 0/1:42,32:37.29,30.08:0.552,0.448:74:99:1207,0,1599 +20 10089441 . A G 1200.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.885;DP=79;ExcessHet=0.0000;FS=6.071;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.948;QD=15.80;ReadPosRankSum=-0.156;SOR=1.363 GT:AD:DD:DF:DP:GQ:PL 0/1:37,39:37.17,36.54:0.5042,0.4958:76:99:1208,0,1313 +20 10089525 . C T 1569.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.859;DP=83;ExcessHet=0.0000;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=1.531;QD=19.38;ReadPosRankSum=0.862;SOR=0.617 GT:AD:DD:DF:DP:GQ:PL 0/1:38,43:36.86,43.14:0.4617,0.5383:81:99:1577,0,1088 +20 10090289 . CA C 414.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=88;ExcessHet=0.0000;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.531;QD=10.91;ReadPosRankSum=0.535;SOR=1.127 GT:AD:DD:DF:DP:GQ:PL 0/1:14,24:13.43,18.97:0.4195,0.5805:38:99:422,0,231 +20 10090764 . A G 861.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;DP=67;ExcessHet=0.0000;FS=4.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=1.207;SOR=0.310 GT:AD:DD:DF:DP:GQ:PL 0/1:34,29:34.13,28.87:0.5405,0.4595:63:99:869,0,1207 +20 10090970 . T C 1278.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DP=70;ExcessHet=0.0000;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=1.509;QD=18.53;ReadPosRankSum=-0.072;SOR=0.518 GT:AD:DD:DF:DP:GQ:PL 0/1:33,36:32.77,36.22:0.4757,0.5243:69:99:1286,0,1092 +20 10091214 . C T 1270.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=73;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.916;QD=18.15;ReadPosRankSum=-0.035;SOR=0.625 GT:AD:DD:DF:DP:GQ:PL 0/1:33,37:33,37:0.4722,0.5278:70:99:1278,0,1110 +20 10092415 . A G 1656.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.731;DP=103;ExcessHet=0.0000;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.082;SOR=0.665 GT:AD:DD:DF:DP:GQ:PL 0/1:52,49:51.9,49.09:0.5137,0.4863:101:99:1664,0,1901 +20 10092927 . G T 127.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=83;ExcessHet=0.0000;FS=60.191;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.009;QD=1.77;ReadPosRankSum=-0.220;SOR=5.279 GT:AD:DD:DF:DP:GQ:PL 0/1:59,13:59.92,12.02:0.8239,0.1761:72:99:135,0,1864 +20 10093568 . GT G 356.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DP=62;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=1.078;QD=8.29;ReadPosRankSum=0.655;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:22,21:21.87,18.86:0.5352,0.4648:43:99:364,0,386 +20 10093923 . T A 1096.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=73;ExcessHet=0.0000;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.358;QD=16.37;ReadPosRankSum=-1.583;SOR=0.772 GT:AD:DD:DF:DP:GQ:PL 0/1:35,32:35.01,31.99:0.5218,0.4782:67:99:1104,0,1257 +20 10094251 . T A 1291.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=67;ExcessHet=0.0000;FS=11.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=1.806;SOR=1.211 GT:AD:DD:DF:DP:GQ:PL 0/1:26,36:25.57,36.41:0.4153,0.5847:62:99:1299,0,781 +20 10094582 . A G 944.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=73;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=1.270;QD=13.69;ReadPosRankSum=-0.018;SOR=0.772 GT:AD:DD:DF:DP:GQ:PL 0/1:39,30:39.01,29.99:0.5635,0.4365:69:99:952,0,1350 +20 10094774 . C T 1057.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DP=81;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.962;QD=14.10;ReadPosRankSum=0.197;SOR=0.690 GT:AD:DD:DF:DP:GQ:PL 0/1:40,35:40.15,34.82:0.5346,0.4654:75:99:1065,0,1282 +20 10095432 . GTGATGATGA G 868.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=79;ExcessHet=0.0000;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-4.431;QD=17.37;ReadPosRankSum=0.396;SOR=0.460 GT:AD:DD:DF:DP:GQ:PL 0/1:27,23:27.11,23.15:0.5379,0.4621:50:99:876,0,1000 +20 10095741 . A G 1096.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DP=72;ExcessHet=0.0000;FS=4.721;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-2.313;QD=15.67;ReadPosRankSum=-0.500;SOR=0.515 GT:AD:DD:DF:DP:GQ:PL 0/1:36,34:36.11,33.89:0.5154,0.4846:70:99:1104,0,1233 +20 10096293 . C T 1376.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DP=79;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=1.397;QD=18.36;ReadPosRankSum=-1.135;SOR=0.638 GT:AD:DD:DF:DP:GQ:PL 0/1:37,38:37,38.01:0.4934,0.5066:75:99:1384,0,1258 +20 10096596 . C T 1583.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;DP=91;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=0.612;QD=18.20;ReadPosRankSum=-0.170;SOR=0.640 GT:AD:DD:DF:DP:GQ:PL 0/1:40,47:40.08,46.92:0.4616,0.5384:87:99:1591,0,1273 +20 10096768 . A C 1703.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.764;DP=96;ExcessHet=0.0000;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.609;QD=18.72;ReadPosRankSum=0.613;SOR=0.445 GT:AD:DD:DF:DP:GQ:PL 0/1:42,49:42,49:0.4623,0.5377:91:99:1711,0,1452 +20 10096899 . G T 1635.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.755;DP=84;ExcessHet=0.0000;FS=13.441;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.677;QD=19.71;ReadPosRankSum=0.422;SOR=1.954 GT:AD:DD:DF:DP:GQ:PL 0/1:40,43:40,43.01:0.4823,0.5177:83:99:1643,0,1520 +20 10096905 . TA T 1630.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=86;ExcessHet=0.0000;FS=11.056;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.739;QD=18.96;ReadPosRankSum=0.461;SOR=1.761 GT:AD:DD:DF:DP:GQ:PL 0/1:43,43:43,43:0.5,0.5:86:99:1638,0,1623 +20 10096933 . G C 1534.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;DP=89;ExcessHet=0.0000;FS=19.713;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-1.840;QD=17.24;ReadPosRankSum=0.383;SOR=1.420 GT:AD:DD:DF:DP:GQ:PL 0/1:47,42:47.11,41.88:0.5287,0.4713:89:99:1542,0,1763 +20 10096958 . G A 1789.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DP=93;ExcessHet=0.0000;FS=19.322;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-1.664;QD=19.45;ReadPosRankSum=-1.593;SOR=1.431 GT:AD:DD:DF:DP:GQ:PL 0/1:44,48:43.98,48.01:0.4786,0.5214:92:99:1797,0,1622 +20 10097075 . T G 1466.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;DP=96;ExcessHet=0.0000;FS=6.613;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-1.389;QD=15.94;ReadPosRankSum=0.235;SOR=0.628 GT:AD:DD:DF:DP:GQ:PL 0/1:44,48:44.15,46.79:0.4858,0.5142:92:99:1474,0,1482 +20 10097101 . C CTTT 1124.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;DP=81;ExcessHet=0.0000;FS=7.014;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-1.720;QD=16.79;ReadPosRankSum=3.010;SOR=0.519 GT:AD:DD:DF:DP:GQ:PL 0/1:33,34:33.4,31.07:0.5175,0.4825:67:99:1132,0,1217 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 1081.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=90;ExcessHet=0.0000;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-6.464;QD=12.15;ReadPosRankSum=-3.097;SOR=0.948 GT:AD:DD:DF:DP:GQ:PL 0/1:57,32:56.34,30.75:0.6436,0.3564:89:99:1089,0,2243 +20 10097437 . TTTTC *,T 929.01 . AC=1,1;AF=0.500,0.500;AN=2;DP=78;ExcessHet=0.0000;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.68;QD=16.89;SOR=1.877 GT:AD:DD:DF:DP:GQ:PL 1/2:0,32,23:0.03,31.04,23.53:0.0179,0.5562,0.4259:55:99:2123,939,1800,1192,0,1122 +20 10097626 . C A 647.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=54;ExcessHet=0.0000;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-1.331;QD=13.49;ReadPosRankSum=1.015;SOR=0.324 GT:AD:DD:DF:DP:GQ:PL 0/1:28,20:27.92,20.07:0.5785,0.4215:48:99:655,0,957 +20 10097789 . T C 709.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;DP=60;ExcessHet=0.0000;FS=5.374;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-2.805;QD=12.45;ReadPosRankSum=0.220;SOR=0.756 GT:AD:DD:DF:DP:GQ:PL 0/1:34,23:34,23:0.5933,0.4067:57:99:717,0,1190 +20 10097928 . G A 591.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=37;ExcessHet=0.0000;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-1.654;QD=16.43;ReadPosRankSum=-0.079;SOR=0.951 GT:AD:DD:DF:DP:GQ:PL 0/1:17,19:17,19:0.4737,0.5263:36:99:599,0,586 +20 10098110 . G C 607.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;DP=36;ExcessHet=0.0000;FS=6.658;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-1.477;QD=16.88;ReadPosRankSum=-0.730;SOR=0.069 GT:AD:DD:DF:DP:GQ:PL 0/1:19,17:18.84,14.72:0.558,0.442:36:99:615,0,727 +20 10098135 . C A 492.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=39;ExcessHet=0.0000;FS=4.449;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.563;QD=12.63;ReadPosRankSum=-0.591;SOR=0.070 GT:AD:DD:DF:DP:GQ:PL 0/1:25,14:34.87,2.95:0.9007,0.0993:39:99:500,0,964 +20 10098219 . TATATATA T 325.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.147;DP=21;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-0.205;QD=15.50;ReadPosRankSum=0.427;SOR=0.465 GT:AD:DD:DF:DP:GQ:PL 0/1:12,9:11,9:0.5455,0.4545:21:99:333,0,461 +20 10098237 . A T 265.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;DP=14;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-1.885;QD=18.97;ReadPosRankSum=1.118;SOR=0.693 GT:AD:DD:DF:DP:GQ:PL 0/1:7,7:7,7:0.4999,0.5001:14:99:273,0,273 +20 10098265 . T C 154.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DP=6;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQRankSum=-1.834;QD=25.77;ReadPosRankSum=0.842;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 0/1:2,4:2.97,1.93:0.5753,0.4247:6:59:162,0,59 +20 10098885 . C CA 463.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=33;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-4.449;QD=14.95;ReadPosRankSum=-0.954;SOR=0.518 GT:AD:DD:DF:DP:GQ:PL 0/1:17,14:12.36,18.8:0.4029,0.5971:31:99:471,0,572 +20 10098945 . T C 428.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;DP=22;ExcessHet=0.0000;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-2.504;QD=19.48;ReadPosRankSum=1.038;SOR=2.368 GT:AD:DD:DF:DP:GQ:PL 0/1:9,13:0.56,19.41:0.071,0.929:22:99:436,0,248 +20 10098987 . C T 400.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.127;DP=25;ExcessHet=0.0000;FS=7.005;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-2.734;QD=16.69;ReadPosRankSum=0.436;SOR=2.925 GT:AD:DD:DF:DP:GQ:PL 0/1:11,13:13.59,10.08:0.5682,0.4318:24:99:408,0,350 +20 10099029 . T C 355.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;DP=30;ExcessHet=0.0000;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-3.731;QD=12.26;ReadPosRankSum=-1.224;SOR=1.609 GT:AD:DD:DF:DP:GQ:PL 0/1:19,10:25.99,0.65:0.9422,0.0578:29:99:363,0,768 +20 10099034 . C A 355.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DP=29;ExcessHet=0.0000;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-3.731;QD=12.26;ReadPosRankSum=-1.850;SOR=1.609 GT:AD:DD:DF:DP:GQ:PL 0/1:19,10:18.71,10.16:0.6384,0.3616:29:99:363,0,768 +20 10099044 . A C 355.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DP=29;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.81;MQRankSum=-4.533;QD=12.26;ReadPosRankSum=-2.207;SOR=0.892 GT:AD:DD:DF:DP:GQ:PL 0/1:19,10:18.72,9.15:0.6602,0.3398:29:99:363,0,768 +20 10099046 . T C 325.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;DP=24;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-4.418;QD=13.57;ReadPosRankSum=-2.297;SOR=0.515 GT:AD:DD:DF:DP:GQ:PL 0/1:15,9:17.83,6.12:0.7256,0.2744:24:99:333,0,603 +20 10099055 . T C 277.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;DP=25;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.20;MQRankSum=-4.179;QD=11.11;ReadPosRankSum=-1.970;SOR=0.770 GT:AD:DD:DF:DP:GQ:PL 0/1:17,8:1.49,18.5:0.1131,0.8869:25:99:285,0,673 +20 10099079 . C T 137.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=30;ExcessHet=0.0000;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=-2.614;QD=4.59;ReadPosRankSum=0.969;SOR=1.329 GT:AD:DD:DF:DP:GQ:PL 0/1:24,6:17.11,12.55:0.572,0.428:30:99:145,0,886 +20 10099111 . T TTTTGTTTG 686.60 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=52;ExcessHet=0.0000;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-0.973;QD=16.35;ReadPosRankSum=-1.860;SOR=0.967 GT:AD:DD:DF:DP:GQ:PL 0/1:23,19:1.81,38.05:0.0671,0.9329:42:99:694,0,802 +20 10099140 . G T 1026.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=64;ExcessHet=0.0000;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-2.469;QD=16.56;ReadPosRankSum=0.846;SOR=1.114 GT:AD:DD:DF:DP:GQ:PL 0/1:30,32:2.81,55.06:0.0637,0.9363:62:99:1034,0,931 +20 10099190 . G T 1055.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;DP=65;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-1.711;QD=16.24;ReadPosRankSum=-1.260;SOR=0.776 GT:AD:DD:DF:DP:GQ:PL 0/1:33,32:33.01,31.99:0.5076,0.4924:65:99:1063,0,1154 +20 10099220 . A G 598.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;DP=47;ExcessHet=0.0000;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-2.596;QD=13.30;ReadPosRankSum=0.629;SOR=0.519 GT:AD:DD:DF:DP:GQ:PL 0/1:25,20:25.13,19.87:0.5559,0.4441:45:99:606,0,873 +20 10099250 . G A 720.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=3.170;DP=39;ExcessHet=0.0000;FS=7.195;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-2.272;QD=19.48;ReadPosRankSum=0.583;SOR=0.162 GT:AD:DD:DF:DP:GQ:PL 0/1:16,21:15.87,21.13:0.4326,0.5674:37:99:728,0,424 +20 10099535 . G A 1356.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=5.034;DP=68;ExcessHet=0.0000;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-1.418;QD=20.87;ReadPosRankSum=-0.777;SOR=0.408 GT:AD:DD:DF:DP:GQ:PL 0/1:26,39:24.12,38.94:0.3861,0.6139:65:99:1364,0,686 +20 10099565 . C T 1367.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.595;DP=70;ExcessHet=0.0000;FS=8.736;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.266;QD=19.82;ReadPosRankSum=1.225;SOR=0.191 GT:AD:DD:DF:DP:GQ:PL 0/1:31,38:29.14,37.92:0.4364,0.5636:69:99:1375,0,994 +20 10099755 . C T 1119.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DP=66;ExcessHet=0.0000;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.022;QD=17.23;ReadPosRankSum=-0.230;SOR=0.446 GT:AD:DD:DF:DP:GQ:PL 0/1:33,32:33.23,31.7:0.5114,0.4886:65:99:1127,0,1148 +20 10099832 . A G 1094.64 . AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;DP=75;ExcessHet=0.0000;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=0.869;QD=15.20;ReadPosRankSum=-1.023;SOR=0.871 GT:AD:DD:DF:DP:GQ:PL 0/1:39,33:38.96,33.04:0.54,0.46:72:99:1102,0,1430 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf.idx b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf.idx index 2abe0add8ae..3f1caef96f5 100644 Binary files a/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf.idx and b/src/test/resources/org/broadinstitute/hellbender/tools/haplotypecaller/expected.testVCFMode.gatk4.withDDandDF.vcf.idx differ