diff --git a/scripts/variantstore/wdl/test/GvsQuickstartHailIntegration.wdl b/scripts/variantstore/wdl/test/GvsQuickstartHailIntegration.wdl index 52b2bbe2c1e..a63fa3793b0 100644 --- a/scripts/variantstore/wdl/test/GvsQuickstartHailIntegration.wdl +++ b/scripts/variantstore/wdl/test/GvsQuickstartHailIntegration.wdl @@ -66,7 +66,6 @@ workflow GvsQuickstartHailIntegration { git_branch_or_tag = git_branch_or_tag, git_hash = git_hash, drop_state = "ZERO", - use_VETS = use_VETS, use_compressed_references = use_compressed_references, extract_do_not_filter_override = extract_do_not_filter_override, load_vcf_headers = true, @@ -99,7 +98,6 @@ workflow GvsQuickstartHailIntegration { git_branch_or_tag = git_branch_or_tag, git_hash = git_hash, project_id = project_id, - use_VETS = use_VETS, dataset_name = GvsQuickstartVcfIntegration.dataset_name, filter_set_name = GvsQuickstartVcfIntegration.filter_set_name, scatter_width = 10, diff --git a/scripts/variantstore/wdl/test/GvsQuickstartIntegration.wdl b/scripts/variantstore/wdl/test/GvsQuickstartIntegration.wdl index 857c04b8ba7..c0545017e71 100644 --- a/scripts/variantstore/wdl/test/GvsQuickstartIntegration.wdl +++ b/scripts/variantstore/wdl/test/GvsQuickstartIntegration.wdl @@ -83,7 +83,6 @@ workflow GvsQuickstartIntegration { input: git_branch_or_tag = git_branch_or_tag, git_hash = GetToolVersions.git_hash, - use_VETS = true, extract_do_not_filter_override = false, dataset_suffix = "vets_hail", use_default_dockers = use_default_dockers,