From 0cb632ac35092e1c6a462bbfd0df569a065a26e8 Mon Sep 17 00:00:00 2001
From: kachulis <39926576+kachulis@users.noreply.github.com>
Date: Tue, 11 Aug 2020 18:49:40 -0400
Subject: [PATCH] GeneExpressionEvaluation tool (#6602)
Adds a tool for evaluating gene expression from rna-seq aligned to whole genome.
---
.../rnaseq/GeneExpressionEvaluation.java | 691 ++
.../hellbender/GATKBaseTest.java | 8 +
...neExpressionEvaluationIntegrationTest.java | 188 +
.../GeneExpressionEvaluationUnitTest.java | 504 +
src/test/resources/large/E_Coli.gff3 | 3 +
src/test/resources/large/E_Coli.gff3.idx | 3 +
src/test/resources/large/E_Coli_small_rna.bam | 3 +
.../resources/large/E_Coli_small_rna.bam.bai | 3 +
.../large/Homo_sapiens.GRCh37.20.gff3 | 3 +
.../large/Homo_sapiens.GRCh37.20.gff3.idx | 3 +
.../large/NA12878.RNAseq.with.mate.info.bam | 3 +
.../NA12878.RNAseq.with.mate.info.bam.bai | 3 +
..._coli_expected.overlap.equal.map.equal.tsv | 9173 +++++++++++++++++
...coli_expected.overlap.equal.map.ignore.tsv | 9173 +++++++++++++++++
...xpected.overlap.proportional.map.equal.tsv | 9173 +++++++++++++++++
...pected.overlap.proportional.map.ignore.tsv | 9173 +++++++++++++++++
.../expected.overlap.equal.map.equal.tsv | 2637 +++++
.../expected.overlap.equal.map.ignore.tsv | 2637 +++++
...xpected.overlap.proportional.map.equal.tsv | 2637 +++++
...pected.overlap.proportional.map.ignore.tsv | 2637 +++++
20 files changed, 48655 insertions(+)
create mode 100644 src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation.java
create mode 100644 src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationIntegrationTest.java
create mode 100644 src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationUnitTest.java
create mode 100644 src/test/resources/large/E_Coli.gff3
create mode 100644 src/test/resources/large/E_Coli.gff3.idx
create mode 100755 src/test/resources/large/E_Coli_small_rna.bam
create mode 100755 src/test/resources/large/E_Coli_small_rna.bam.bai
create mode 100644 src/test/resources/large/Homo_sapiens.GRCh37.20.gff3
create mode 100644 src/test/resources/large/Homo_sapiens.GRCh37.20.gff3.idx
create mode 100644 src/test/resources/large/NA12878.RNAseq.with.mate.info.bam
create mode 100644 src/test/resources/large/NA12878.RNAseq.with.mate.info.bam.bai
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv
create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv
diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation.java
new file mode 100644
index 00000000000..8d0230c2e3c
--- /dev/null
+++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation.java
@@ -0,0 +1,691 @@
+package org.broadinstitute.hellbender.tools.walkers.rnaseq;
+
+import htsjdk.samtools.AlignmentBlock;
+import htsjdk.samtools.Cigar;
+import htsjdk.samtools.SAMFileHeader;
+import htsjdk.samtools.SAMReadGroupRecord;
+import htsjdk.samtools.SAMSequenceDictionary;
+import htsjdk.samtools.SAMTag;
+import htsjdk.samtools.SAMUtils;
+import htsjdk.samtools.TextCigarCodec;
+import htsjdk.samtools.util.Interval;
+import htsjdk.samtools.util.IntervalList;
+import htsjdk.samtools.util.OverlapDetector;
+import htsjdk.tribble.annotation.Strand;
+import htsjdk.tribble.gff.Gff3BaseData;
+import htsjdk.tribble.gff.Gff3Feature;
+import org.apache.commons.lang3.tuple.Pair;
+import org.broadinstitute.barclay.argparser.Argument;
+import org.broadinstitute.barclay.argparser.BetaFeature;
+import org.broadinstitute.barclay.argparser.CommandLineProgramProperties;
+import org.broadinstitute.barclay.argparser.ExperimentalFeature;
+import org.broadinstitute.barclay.help.DocumentedFeature;
+import org.broadinstitute.hellbender.cmdline.StandardArgumentDefinitions;
+import org.broadinstitute.hellbender.cmdline.programgroups.CoverageAnalysisProgramGroup;
+import org.broadinstitute.hellbender.engine.*;
+import org.broadinstitute.hellbender.engine.filters.AlignmentAgreesWithHeaderReadFilter;
+import org.broadinstitute.hellbender.engine.filters.MappingQualityReadFilter;
+import org.broadinstitute.hellbender.engine.filters.ReadFilter;
+import org.broadinstitute.hellbender.engine.filters.ReadFilterLibrary;
+import org.broadinstitute.hellbender.exceptions.GATKException;
+import org.broadinstitute.hellbender.exceptions.UserException;
+
+import org.broadinstitute.hellbender.utils.IntervalUtils;
+import org.broadinstitute.hellbender.utils.SimpleInterval;
+
+import org.broadinstitute.hellbender.utils.read.GATKRead;
+
+import org.broadinstitute.hellbender.utils.tsv.DataLine;
+import org.broadinstitute.hellbender.utils.tsv.TableColumnCollection;
+import org.broadinstitute.hellbender.utils.tsv.TableReader;
+import org.broadinstitute.hellbender.utils.tsv.TableWriter;
+
+
+import java.io.File;
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.*;
+import java.util.stream.Collectors;
+
+/**
+ * Evaluate gene expression from RNA-seq reads aligned to genome.
+ *
+ * This tool counts fragments to evaluate gene expression from RNA-seq reads aligned to the genome. Features to evaluate expression over are defined in an input annotation file in gff3 fomat
+ * (https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md). Output is a tsv listing sense and antisense expression for all stranded grouping features,
+ * and expression (labeled as sense) for all unstranded grouping features.
+ *
+ *
+ *
+ *
Input
+ *
+ * - BAM file of RNA-seq reads
+ * - Gff3 file of feature annotations
+ *
+ *
+ *
+ *
Output
+ * TSV file of gene expression
+ *
+ *
+ *
+ *
Usage Examples
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ *
+ *
+ *
+ *Reads are assumed to be paired-end. Reads which are in a "good pair" are counted once together as a single fragment. Reads which are not in a "good pair" are each counted separately. Fragment
+ * size is not explicitly considered in the "good pair" decision, instead we rely on the aligner to take that into consideration intelligently when deciding whether to set the properly paired flag.
+ * A "good pair" is defined as:
+ *
Both reads are mapped
+ * Properly paired flag is set
+ * Both reads are on same contig
+ * Mapping quality of both reads is at least minimum-mapping-quality
+ *
+ *
+ *
+ * Reads can be either from spliced or unspliced RNA. If from spliced RNA, alignment blocks of reads are taken as their coverage.
+ * If from unspliced RNA, the entire region from the most 5' base of either read to most 3' base of either read is taken as the fragment
+ * coverage. Splice status is set through the command line. By default, splice status is taken to be "spliced."
+ *
+ *
For spliced RNA
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ *
+ *
+ *
+ *
For unspliced RNA
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --unspliced
+ *
+ *
+ *
+ * Gene expression is aggregated over "groupingType" features, and overlap of fragments with features is determined by "overlapType" features. By default,
+ * "groupingType" is genes, and "overlapType" is exons. Additional grouping_types and overlap_types can be used as well.
+ *
+ *
Use gene and pseudogene as grouping types
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --grouping-type gene
+ * --grouping-type pseudogene
+ *
+ *
+ *
+ * The read orientation can be set using the read-strand argument. By default, it is assumed that read1 will be on the forward strand,
+ * and read2 on the reverse strand.
+ *
+ *
+ *
Set read strands to read1 reverse, read2 forward
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --read-strands REVERSE-FORWARD
+ *
+ *
+ * Set read1 and read2 to both be forward strand
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --read-strands FORWARD-FORWARD
+ *
+ *
+ *
+ *
+ * Multi-overlapping fragments (fragment alignments which overlap multiple grouping features) can be handled in two ways. Equal weight can be given to each grouping feature,
+ * in which case each is given weight 1/N, for N overlapping grouping features.
+ *
+ *
+ *
Equal weight for multi-overlapping fragments
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --multi-overlap-method EQUAL
+ *
+ *
+ * Multi-overlapping fragments can also have weight distributed according to how much of the fragment overlaps each feature. In this case, each grouping feature is given an unnormalized weight corresponding
+ * to the fraction of the fragment that overlaps its overlapping features. A "non-overlapping" option is also given an unnormalized weight corresponding the the fraction of the fragment that overlaps no features.
+ * Final weights for each feature are found by normalizing by the sum of unnormalized weights. This is the default behavior.
+ *
+ *
+ *
Proportional weight for multi-overlapping fragments
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --multi-overlap-method PROPORTIONAL
+ *
+ *
+ *
+ * Multi-mapping fragments (fragments whose reads map to multiple locations) can also be handled in two ways. They can be ignored, in which case only fragments with a single mapping are counted.
+ * This is default behavior.
+ *
+ *
+ *
Ignore multi-mapping fragments
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --multi-map-method IGNORE
+ *
+ *
+ * Multi-mapping fragments can alternatively have their weight distributed equally between the different alignments. If run in this setting, minimum-mapping-quality will be set to 0,
+ * regardless of its value on the command line.
+ *
+ *
+ *
Equally weight each alignment of multi-mapping fragments
+ *
+ * gatk GeneExpressionEvaluation
+ * -I input.bam
+ * -G geneAnnotations.gff3
+ * -O output.tsv
+ * --multi-map-method EQUAL
+ *
+ *
+ * The number of mapping for a particular fragment is extracted via the NH tag.
+ * Currently this tool only works on a single sample BAM. If a readgroup header line indicates multiple samples in the same BAM, the tool will throw an exception.
+ */
+
+@CommandLineProgramProperties(
+ summary = "This tool evaluates gene expression from RNA-seq reads aligned to genome. Features to evaluate expression over are defined in an input annotation file in gff3 fomat " +
+ "(https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md). Output is a tsv listing sense and antisense expression for all grouping features. " +
+ "For unstranded features, fragments transcribed on the forward strand are counted as sense, and fragments transcribed on the reverse strand are counted as antisense.",
+ oneLineSummary = "Evaluate gene expression from RNA-seq reads aligned to genome.",
+ programGroup = CoverageAnalysisProgramGroup.class
+)
+@DocumentedFeature
+@BetaFeature
+public final class GeneExpressionEvaluation extends ReadWalker {
+
+ @Argument(
+ doc = "Output file for gene expression.",
+ fullName = StandardArgumentDefinitions.OUTPUT_LONG_NAME,
+ shortName = StandardArgumentDefinitions.OUTPUT_SHORT_NAME
+ )
+ private File outputCountsFile = null;
+
+ @Argument(doc="Gff3 file containing feature annotations", shortName = "G", fullName = "gff-file")
+ private FeatureInput gffFile;
+
+ @Argument(doc="Feature types to group by", fullName = "grouping-type")
+ private Set groupingType = new HashSet<>(Collections.singleton("gene"));
+
+ @Argument(doc="Feature overlap types", fullName = "overlap-type")
+ private Set overlapType = new HashSet<>(Collections.singleton("exon"));
+
+ @Argument(doc="Whether to label features by ID or Name", fullName = "feature-label-key")
+ private FeatureLabelType featureLabelKey = FeatureLabelType.NAME;
+
+ @Argument(doc = "Which strands (forward or reverse) each read is expected to be on", fullName = "read-strands")
+ private ReadStrands readStrands = ReadStrands.FORWARD_REVERSE;
+
+ @Argument(doc = "How to distribute weight of alignments which overlap multiple features", fullName = "multi-overlap-method")
+ private MultiOverlapMethod multiOverlapMethod = MultiOverlapMethod.PROPORTIONAL;
+
+ @Argument(doc = "How to distribute weight of reads with multiple alignments", fullName = "multi-map-method")
+ private MultiMapMethod multiMapMethod = MultiMapMethod.IGNORE;
+
+ @Argument(doc = "Whether the rna is unspliced. If spliced, alignments must be from an aligner run in a splice-aware mode. If unspliced, alignments must be from an aligner run in a non-splicing mode.")
+ private boolean unspliced = false;
+
+ final private Map featureCounts = new LinkedHashMap<>();
+
+ final private OverlapDetector> featureOverlapDetector = new OverlapDetector<>(0,0);
+
+ private String sampleName = null;
+
+ final MappingQualityReadFilter mappingQualityFilter = new MappingQualityReadFilter();
+
+ enum FeatureLabelType {
+ NAME("Name") {
+ @Override
+ String getValue(final Gff3BaseData baseData) {
+ return baseData.getName();
+ }
+ },
+ ID("ID") {
+ @Override
+ String getValue(final Gff3BaseData baseData) {
+ return baseData.getId();
+ }
+ };
+
+ String key;
+ FeatureLabelType(final String key) {
+ this.key = key;
+ }
+ String getKey() {
+ return key;
+ }
+ abstract String getValue(final Gff3BaseData baseData);
+
+ }
+
+ enum MultiOverlapMethod {
+
+ EQUAL {
+ @Override
+ Map getWeights(final List alignmentIntervals, final OverlapDetector> featureOverlapDetector) {
+ final Set overlappingFeatures = alignmentIntervals.stream().flatMap(i -> featureOverlapDetector.getOverlaps(i).stream().map(Pair::getLeft)).collect(Collectors.toSet());
+ final int nOverlappingFeatures = overlappingFeatures.size();
+ final Map weights = new LinkedHashMap<>();
+ for (final Gff3BaseData feature : overlappingFeatures) {
+ weights.put(feature, 1.0d/nOverlappingFeatures);
+ }
+ return weights;
+ }
+ },
+
+ PROPORTIONAL {
+ @Override
+ Map getWeights(final List alignmentIntervals, final OverlapDetector> featureOverlapDetector) {
+ final List mergedAlignmentIntervals = getMergedIntervals(alignmentIntervals);
+
+ final int basesOnReference = mergedAlignmentIntervals.stream().map(Interval::getLengthOnReference).reduce(0, Integer::sum);
+ int totalCoveredBases = 0;
+ double summedUnNormalizedWeights = 0;
+ final Map weights = new LinkedHashMap<>();
+ for (final Interval alignmentInterval : mergedAlignmentIntervals) {
+ final Set> overlaps = featureOverlapDetector.getOverlaps(alignmentInterval);
+ final Map> overlappingIntervalsByFeature = new LinkedHashMap<>();
+ final List allOverlappingIntervals = new ArrayList<>();
+ for (Pair overlap : overlaps) {
+ final List overlappingIntervals = overlappingIntervalsByFeature.computeIfAbsent(overlap.getLeft(), f -> new ArrayList<>());
+ overlappingIntervals.add(overlap.getRight());
+ allOverlappingIntervals.add(overlap.getRight());
+ }
+
+ final List allOverlappingIntervalsMerged = getMergedIntervals(allOverlappingIntervals);
+ totalCoveredBases += allOverlappingIntervalsMerged.stream().map(alignmentInterval::getIntersectionLength).reduce(0,Integer::sum);
+ for (Map.Entry> overlap : overlappingIntervalsByFeature.entrySet()) {
+ final List mergedOverlapIntervals = getMergedIntervals(overlap.getValue());
+ final double weight = (double)mergedOverlapIntervals.stream().map(alignmentInterval::getIntersectionLength).reduce(0,Integer::sum)/basesOnReference;
+ weights.compute(overlap.getKey(), (k,v) -> v == null? weight : v + weight);
+ summedUnNormalizedWeights += weight;
+ }
+ }
+
+ summedUnNormalizedWeights += 1.0 - (double)totalCoveredBases/basesOnReference;
+
+ final double normalizationFactor = 1.0d/summedUnNormalizedWeights;
+
+ for (final Gff3BaseData feature : weights.keySet()) {
+ weights.compute(feature, (k,v) -> v*normalizationFactor);
+ }
+
+ return weights;
+ }
+ };
+
+ abstract Map getWeights(final List alignmentIntervals, final OverlapDetector> featureOverlapDetector);
+ }
+
+ enum MultiMapMethod {
+ IGNORE {
+ @Override
+ protected Map getWeightsForMethod(final int nHits, final Map previousWeights) {
+ if (nHits == 1) {
+ return previousWeights;
+ } else {
+ return Collections.emptyMap();
+ }
+ }
+ },
+ EQUAL {
+ @Override
+ protected Map getWeightsForMethod(final int nHits, final Map previousWeights) {
+ if (nHits == 1) {
+ return previousWeights;
+ } else {
+ final Map newWeights = new HashMap<>(previousWeights.size());
+ for (final Map.Entry entry : previousWeights.entrySet()) {
+ newWeights.put(entry.getKey(), entry.getValue()/(double)nHits);
+ }
+ return newWeights;
+ }
+ }
+ };
+
+ Map getWeights(final int nHits, final Map previousWeights) {
+ if (nHits < 1) {
+ throw new GATKException("nHits = " + nHits + ", cannot be less than 1");
+ }
+
+ return getWeightsForMethod(nHits, previousWeights);
+ }
+
+ abstract protected Map getWeightsForMethod(final int nHits, final Map previousWeights);
+
+ }
+
+ @Override
+ public List getDefaultReadFilters() {
+ final List readFilters = new ArrayList<>();
+ readFilters.add(ReadFilterLibrary.VALID_ALIGNMENT_START);
+ readFilters.add(ReadFilterLibrary.VALID_ALIGNMENT_END);
+ readFilters.add(new AlignmentAgreesWithHeaderReadFilter(getHeaderForReads()));
+ readFilters.add(ReadFilterLibrary.HAS_MATCHING_BASES_AND_QUALS);
+ readFilters.add(ReadFilterLibrary.READLENGTH_EQUALS_CIGARLENGTH);
+ readFilters.add(ReadFilterLibrary.SEQ_IS_STORED);
+ readFilters.add(ReadFilterLibrary.MAPPED);
+ readFilters.add(ReadFilterLibrary.NON_ZERO_REFERENCE_LENGTH_ALIGNMENT);
+ readFilters.add(ReadFilterLibrary.NOT_DUPLICATE);
+ readFilters.add(mappingQualityFilter);
+ return readFilters;
+ }
+
+ @Override
+ public void onTraversalStart() {
+ validateOutputFile(outputCountsFile);
+ if(multiMapMethod == MultiMapMethod.EQUAL) {
+ mappingQualityFilter.minMappingQualityScore = 0;
+ }
+ final SAMSequenceDictionary dict = getBestAvailableSequenceDictionary();
+ final SAMFileHeader header = getHeaderForReads();
+ for (final SAMReadGroupRecord readGroupRecord : header.getReadGroups()) {
+ if (sampleName == null) {
+ sampleName = readGroupRecord.getSample();
+ } else {
+ if (!sampleName.equals(readGroupRecord.getSample())) {
+ throw new GATKException("Cannot run GeneExpressionEvaluation on multi-sample bam.");
+ }
+ }
+ }
+ if (dict == null) {
+ throw new GATKException("sequence dictionary must be specified (" + StandardArgumentDefinitions.SEQUENCE_DICTIONARY_NAME + ").");
+ }
+
+ logger.info("collecting list of features");
+ final List allIntervals = hasUserSuppliedIntervals()? getTraversalIntervals() : IntervalUtils.getAllIntervalsForReference(dict);
+ for (final SimpleInterval interval : allIntervals) {
+ final List contigFeatures = features.getFeatures(gffFile, interval);
+ logger.info("collecting features in " + interval.getContig() + ":" + interval.getStart() + "-" + interval.getEnd());
+ for (final Gff3Feature feature : contigFeatures) {
+ if (groupingType.contains(feature.getType())) {
+ final List overlappingFeatures = feature.getDescendents().stream().filter(f -> overlapType.contains(f.getType())).map(f -> new Interval(f.getContig(), f.getStart(), f.getEnd())).collect(Collectors.toList());
+ final Gff3BaseData shrunkGroupingBaseData = shrinkBaseData(feature.getBaseData());
+ addGroupingFeature(shrunkGroupingBaseData, overlappingFeatures);
+ }
+ }
+ }
+
+ logger.info("Collecting read counts...");
+ }
+
+ private void validateOutputFile(final File file) {
+ if (file.exists()) {
+ if (!Files.isWritable(file.toPath())) {
+ throw new UserException.CouldNotCreateOutputFile(file, " is not writable");
+ }
+ } else {
+ if (!Files.isWritable(file.getAbsoluteFile().getParentFile().toPath())) {
+ throw new UserException.CouldNotCreateOutputFile(file, " is not writable");
+ }
+ }
+ }
+
+ private Gff3BaseData shrinkBaseData(final Gff3BaseData baseData) {
+ //remove all but featureLabelKey attributes
+ final Map> shrunkAttributes = baseData.getAttributes().entrySet().stream().filter(e -> e.getKey().equals(featureLabelKey.getKey())).collect(Collectors.toMap(Map.Entry::getKey,Map.Entry::getValue));
+ return new Gff3BaseData(baseData.getContig(), baseData.getSource(), baseData.getType(), baseData.getStart(), baseData.getEnd(), baseData.getScore(), baseData.getStrand(), baseData.getPhase(), shrunkAttributes);
+ }
+
+ private void addGroupingFeature(final Gff3BaseData groupingBaseData, final List overlappingFeatures) {
+ final String geneLabel = featureLabelKey.getValue(groupingBaseData);
+ if (geneLabel == null) {
+ throw new UserException("no geneid field " + featureLabelKey + " found in feature at " + groupingBaseData.getContig() + ":" + groupingBaseData.getStart() + "-" + groupingBaseData.getEnd());
+ }
+
+ featureCounts.put(groupingBaseData, new Coverage(0, 0));
+ for (final Interval overlappingFeature : overlappingFeatures) {
+ featureOverlapDetector.addLhs(Pair.of(groupingBaseData, overlappingFeature), overlappingFeature);
+ }
+ }
+
+
+ static boolean inGoodPair(final GATKRead read, int minimumMappingQuality, final ReadStrands readStrands) {
+
+ boolean ret = !read.mateIsUnmapped() && read.isProperlyPaired() && read.getContig().equals(read.getMateContig());
+ if (ret) {
+ final boolean readsOnSameStrand = read.isReverseStrand() == read.mateIsReverseStrand();
+ ret = readStrands.expectReadsOnSameStrand == readsOnSameStrand;
+ }
+
+ if (ret) {
+ if (!read.hasAttribute(SAMTag.MQ.toString())) {
+ throw new GATKException("Mate quality must be included. Consider running FixMateInformation.");
+ }
+ ret = read.getAttributeAsInteger(SAMTag.MQ.toString()) >= minimumMappingQuality;
+ }
+
+ return ret;
+ }
+
+ /**
+ * Get the alignment intervals associated with the particular read. If the read is part of a "good pair" then the alignment intervals will be calculated based on the read and its
+ * mate, otherwise based on only the read. For spliced data, the alignment intervals are based on the alignment blocks of the read (and its mate if a "good pair"). For unspliced data,
+ * only a single interval is returned, which is the interval from the 5' most base covered by the read or its mate, and the 3' most base covered by the read or its mate (or by the read only
+ * if not a "good pair"). Note that for good pairs this method is only called for one of the reads in the pair so as to not double count.
+ *
+ * @param read the read
+ * @param unspliced whether data is unspliced
+ * @param minimumMappingQuality the minimum mapping quality required of both the read and its mate in order to be considered a "good pair"
+ * @return alignment intervals to search for overlapping genes
+ */
+ static List getAlignmentIntervals(final GATKRead read, final boolean unspliced, final int minimumMappingQuality, final ReadStrands readStrands) {
+
+ if (!unspliced) {
+ final List alignmentIntervals = new ArrayList<>();
+
+ final List readAlignmentBlocks = SAMUtils.getAlignmentBlocks(read.getCigar(), read.getStart(), "read cigar");
+
+ for( final AlignmentBlock block : readAlignmentBlocks) {
+ alignmentIntervals.add(new Interval(read.getContig(), block.getReferenceStart(), block.getReferenceStart()+block.getLength() - 1));
+ }
+
+ if (inGoodPair(read, minimumMappingQuality, readStrands)) {
+ final String mateCigarString = read.getAttributeAsString(SAMTag.MC.toString());
+ if(mateCigarString == null) {
+ throw new GATKException("Mate cigar must be present if using spliced reads");
+ }
+ final List mateAlignmentBlocks = SAMUtils.getAlignmentBlocks(TextCigarCodec.decode(mateCigarString), read.getMateStart(), "mate cigar");
+ for( final AlignmentBlock block : mateAlignmentBlocks) {
+ final Interval alignmentBlockInterval = new Interval(read.getMateContig(), block.getReferenceStart(), block.getReferenceStart()+block.getLength() - 1);
+ alignmentIntervals.add(alignmentBlockInterval);
+ }
+ }
+ return getMergedIntervals(alignmentIntervals);
+
+ } else {
+ if (read.isUnmapped()) {
+ return Collections.emptyList();
+ }
+
+ final boolean inGoodPair = inGoodPair(read, minimumMappingQuality, readStrands);
+
+ final int start = inGoodPair? Math.min(read.getStart(), read.getMateStart()) : read.getStart();
+ final int end = inGoodPair? start + Math.abs(read.getFragmentLength()) - 1 : read.getEnd();
+ return Collections.singletonList(new Interval(read.getContig(), start, end));
+ }
+
+
+ }
+
+ @Override
+ public void apply(GATKRead read, ReferenceContext referenceContext, FeatureContext featureContext) {
+ if ((read.isFirstOfPair() || !inGoodPair(read, mappingQualityFilter.minMappingQualityScore, readStrands))) {
+ final List alignmentIntervals = getAlignmentIntervals(read, unspliced, mappingQualityFilter.minMappingQualityScore, readStrands);
+
+ final Map initialWeights = multiOverlapMethod.getWeights(alignmentIntervals, featureOverlapDetector);
+ final Map finalWeights = multiMapMethod.getWeights(read.hasAttribute(SAMTag.NH.toString()) ? read.getAttributeAsInteger(SAMTag.NH.toString()) : 1, initialWeights);
+
+ for (final Map.Entry weight : finalWeights.entrySet()) {
+ final Gff3BaseData feature = weight.getKey();
+ final boolean isSense = readStrands.isSense(read, feature);
+ if (isSense) {
+ featureCounts.get(feature).addSenseCount(weight.getValue());
+ } else {
+ featureCounts.get(feature).addAntiSenseCount(weight.getValue());
+ }
+ }
+ }
+ }
+
+
+
+ @Override
+ public Object onTraversalSuccess() {
+ logger.info(String.format("Writing read counts to %s...", outputCountsFile.getAbsolutePath()));
+ try (final FragmentCountWriter writer = new FragmentCountWriter(outputCountsFile.toPath(), sampleName, featureLabelKey)) {
+ int i=0;
+ for (final GATKPath input_bam: readArguments.getReadPathSpecifiers()) {
+ writer.writeMetadata("input_bam_"+i, input_bam.toString());
+ i++;
+ }
+ writer.writeMetadata("annotation_file", gffFile.toString());
+ for (final Map.Entry featureCoverage : featureCounts.entrySet()) {
+ final Gff3BaseData feature = featureCoverage.getKey();
+ final Coverage coverage = featureCoverage.getValue();
+ writer.writeRecord(new SingleStrandFeatureCoverage(feature, coverage.sense_count, true));
+ if (feature.getStrand() != Strand.NONE) {
+ writer.writeRecord(new SingleStrandFeatureCoverage(feature, coverage.antisense_count, false));
+ }
+ }
+ } catch (IOException ex) {
+ throw new UserException(ex.getMessage());
+ }
+
+ logger.info(String.format("%s complete.", getClass().getSimpleName()));
+
+ return null;
+ }
+
+ public static class FragmentCountWriter extends TableWriter {
+ final String name;
+ final FeatureLabelType gene_label_key;
+ public FragmentCountWriter(final Path file , final String name, final FeatureLabelType gene_label_key) throws IOException {
+ super(file, new TableColumnCollection("gene_label", "contig", "start", "stop", "strand", "sense_antisense", name+"_counts"));
+ this.name = name;
+ this.gene_label_key = gene_label_key;
+ }
+
+ protected void composeLine(final SingleStrandFeatureCoverage fragmentCount, final DataLine dataLine) {
+ final String gene_label = gene_label_key.getValue(fragmentCount.baseData);
+ dataLine.set("contig", fragmentCount.baseData.getContig())
+ .set("start", fragmentCount.baseData.getStart())
+ .set("stop", fragmentCount.baseData.getEnd())
+ .set("strand", fragmentCount.baseData.getStrand().encode())
+ .set("sense_antisense", fragmentCount.sense? "sense" : "antisense")
+ .set(name != null? name+"_counts" : "counts", fragmentCount.count, 2)
+ .set("gene_label", gene_label == null? "" : gene_label);
+ }
+ }
+
+ public static class FragmentCountReader extends TableReader {
+
+ public FragmentCountReader(final Path file) throws IOException {
+ super(file);
+ }
+ @Override
+ protected GeneExpressionEvaluation.SingleStrandFeatureCoverage createRecord(final DataLine dataLine) {
+ return new GeneExpressionEvaluation.SingleStrandFeatureCoverage(new Gff3BaseData(dataLine.get("contig"),".", ".",
+ dataLine.getInt("start"), dataLine.getInt("stop"), -1d, Strand.decode(dataLine.get("strand")), -1,
+ Collections.singletonMap("ID", Collections.singletonList(dataLine.get("gene_label")))), dataLine.getDouble(6), dataLine.get("sense_antisense").equals("sense"));
+ }
+ }
+
+ public static class Coverage {
+ private double sense_count;
+ private double antisense_count;
+
+ public Coverage(final double sense_count, final double antisense_count) {
+ this.sense_count = sense_count;
+ this.antisense_count = antisense_count;
+ }
+
+ public void addSenseCount(double count) {
+ sense_count += count;
+ }
+
+ public void addAntiSenseCount(double count) {
+ antisense_count += count;
+ }
+
+ public double getSenseCount() {
+ return sense_count;
+ }
+
+ public double getAntisenseCount() {
+ return antisense_count;
+ }
+ }
+
+ public static class SingleStrandFeatureCoverage {
+ public final Gff3BaseData baseData;
+ public final double count;
+ public final boolean sense;
+
+ SingleStrandFeatureCoverage(final Gff3BaseData baseData, final double count, final boolean sense) {
+ this.baseData = baseData;
+ this.count = count;
+ this.sense = sense;
+ }
+ }
+
+ enum ReadStrands {
+ FORWARD_FORWARD(true, true),
+ FORWARD_REVERSE(true, false),
+ REVERSE_FORWARD(false, true),
+ REVERSE_REVERSE(false, false);
+
+ ReadStrands(final boolean r1TranscriptionStrand, final boolean r2TranscriptionStrand) {
+ this.r1TranscriptionStrand = r1TranscriptionStrand;
+ this.r2TranscriptionStrand = r2TranscriptionStrand;
+ this.expectReadsOnSameStrand = r1TranscriptionStrand == r2TranscriptionStrand;
+ }
+ final boolean r1TranscriptionStrand;
+ final boolean r2TranscriptionStrand;
+ final boolean expectReadsOnSameStrand;
+
+ boolean isSense(final GATKRead read, final Gff3BaseData feature) {
+
+ final Strand senseStrand = feature.getStrand() == Strand.NONE ? Strand.POSITIVE : feature.getStrand(); // call forward strand sense for unstranded features
+ final boolean isTranscriptionStrand = read.isFirstOfPair() ? r1TranscriptionStrand : r2TranscriptionStrand;
+ final boolean trancriptionStrandIsReverseStrand = isTranscriptionStrand == read.isReverseStrand();
+ final Strand transcriptionStrand = trancriptionStrandIsReverseStrand? Strand.NEGATIVE : Strand.POSITIVE;
+ return transcriptionStrand == senseStrand;
+ }
+ }
+
+ private static List getMergedIntervals(final List intervals) {
+ final List intervalsCopy = new ArrayList<>(intervals);
+ Collections.sort(intervalsCopy);
+ final IntervalList.IntervalMergerIterator mergeringIterator = new IntervalList.IntervalMergerIterator(intervalsCopy.iterator(), true, true, false);
+ final List merged = new ArrayList<>();
+ while (mergeringIterator.hasNext()) {
+ merged.add(mergeringIterator.next());
+ }
+ return merged;
+ }
+}
diff --git a/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java b/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java
index c56867f2941..1abba24fefc 100644
--- a/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java
+++ b/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java
@@ -74,6 +74,14 @@ public abstract class GATKBaseTest extends BaseTest {
public static final String NA12878_20_21_WGS_cram = largeFileTestDir + "CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram";
public static final String NA12878_20_21_covered_regions = publicTestDir + "wgs_calling_regions.v1.chr20_chr21.interval_list";
+ // ~10,000 reads from chromosome 20 of NA12878 RNA-seq, aligned to b37 with STAR
+ public static final String NA12878_20_RNAseq_bam = largeFileTestDir + "NA12878.RNAseq.with.mate.info.bam";
+ public static final String b37_20_gff3 = largeFileTestDir + "Homo_sapiens.GRCh37.20.gff3";
+
+ // ~20,000 reads from E-Coli RNA-seq, aligned with bwa-aln
+ public static final String E_COLI_RNAseq_bam = largeFileTestDir + "E_Coli_small_rna.bam";
+ public static final String E_COLI_gff3 = largeFileTestDir + "E_Coli.gff3";
+
// Variants from a DBSNP 138 VCF overlapping the reads in NA12878_20_21_WGS_bam
public static final String dbsnp_138_b37_20_21_vcf = largeFileTestDir + "dbsnp_138.b37.20.21.vcf";
diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationIntegrationTest.java
new file mode 100644
index 00000000000..d53b0a0c76a
--- /dev/null
+++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationIntegrationTest.java
@@ -0,0 +1,188 @@
+package org.broadinstitute.hellbender.tools.walkers.rnaseq;
+
+import htsjdk.tribble.gff.Gff3BaseData;
+import org.broadinstitute.hellbender.CommandLineProgramTest;
+
+import org.testng.Assert;
+import org.testng.annotations.DataProvider;
+import org.testng.annotations.Test;
+
+import java.io.File;
+import java.io.IOException;
+import java.nio.file.Path;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.LinkedHashMap;
+import java.util.List;
+import java.util.Map;
+
+public class GeneExpressionEvaluationIntegrationTest extends CommandLineProgramTest {
+
+ // If true, update the expected outputs in tests that assert a match vs. prior output,
+ // instead of actually running the tests. Can be used with "./gradlew test -Dtest.single=GeneExpressionEvaluationIntegrationTest"
+ // to update all of the exact-match tests at once. After you do this, you should look at the
+ // diffs in the new expected outputs in git to confirm that they are consistent with expectations.
+ public static final boolean UPDATE_MATCH_EXPECTED_OUTPUTS = false;
+
+ public static final String TEST_FILES_DIR = toolsTestDir + "walkers/rnaseq/GeneExpressionEvaluation/";
+
+ //allow results to differ by less than 0.1% from past and still count as passing
+ private static final double DEFAULT_LENIENCE = 0.001;
+
+ /*
+ * Make sure that someone didn't leave the UPDATE_EXACT_MATCH_EXPECTED_OUTPUTS toggle turned on
+ */
+ @Test
+ public void assertThatExpectedOutputUpdateToggleIsDisabled() {
+ Assert.assertFalse(UPDATE_MATCH_EXPECTED_OUTPUTS, "The toggle to update expected outputs should not be left enabled");
+ }
+
+ @DataProvider(name = "consistentWithPastDataProvider")
+ public Object[][] consistentWithPastDataProvider() {
+ return new Object[][] {
+ {NA12878_20_RNAseq_bam, b37_20_gff3, GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, GeneExpressionEvaluation.MultiMapMethod.IGNORE,
+ new File(TEST_FILES_DIR, "expected.overlap.proportional.map.ignore.tsv"), "exon", false},
+ {NA12878_20_RNAseq_bam, b37_20_gff3, GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, GeneExpressionEvaluation.MultiMapMethod.IGNORE,
+ new File(TEST_FILES_DIR, "expected.overlap.equal.map.ignore.tsv"), "exon", false},
+ {NA12878_20_RNAseq_bam, b37_20_gff3, GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, GeneExpressionEvaluation.MultiMapMethod.EQUAL,
+ new File(TEST_FILES_DIR, "expected.overlap.proportional.map.equal.tsv"), "exon", false},
+ {NA12878_20_RNAseq_bam, b37_20_gff3, GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, GeneExpressionEvaluation.MultiMapMethod.EQUAL,
+ new File(TEST_FILES_DIR, "expected.overlap.equal.map.equal.tsv"), "exon", false},
+
+ {E_COLI_RNAseq_bam, E_COLI_gff3, GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, GeneExpressionEvaluation.MultiMapMethod.IGNORE,
+ new File(TEST_FILES_DIR, "e_coli_expected.overlap.proportional.map.ignore.tsv"), "CDS", true},
+ {E_COLI_RNAseq_bam, E_COLI_gff3, GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, GeneExpressionEvaluation.MultiMapMethod.IGNORE,
+ new File(TEST_FILES_DIR, "e_coli_expected.overlap.equal.map.ignore.tsv"), "CDS", true},
+ {E_COLI_RNAseq_bam, E_COLI_gff3, GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, GeneExpressionEvaluation.MultiMapMethod.EQUAL,
+ new File(TEST_FILES_DIR, "e_coli_expected.overlap.proportional.map.equal.tsv"), "CDS", true},
+ {E_COLI_RNAseq_bam, E_COLI_gff3, GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, GeneExpressionEvaluation.MultiMapMethod.EQUAL,
+ new File(TEST_FILES_DIR, "e_coli_expected.overlap.equal.map.equal.tsv"), "CDS", true}
+ };
+ }
+
+ @Test(dataProvider = "consistentWithPastDataProvider")
+ public void testConsistentWithPast(final String bamPath, final String gff3Path, final GeneExpressionEvaluation.MultiOverlapMethod multiOverlapMethod, final GeneExpressionEvaluation.MultiMapMethod multiMapMethod, final File expected,
+ final String overlapType, final Boolean unspliced) throws IOException {
+ final File output = createTempFile("testConsistentWithPast", ".tsv");
+
+ final String outputPath = UPDATE_MATCH_EXPECTED_OUTPUTS ? expected.getAbsolutePath() : output.getAbsolutePath();
+
+ final String[] args = {
+ "-I", bamPath,
+ "-G", gff3Path,
+ "--grouping-type", "gene",
+ "--grouping-type", "pseudogene",
+ "--overlap-type", overlapType,
+ "--multi-overlap-method", multiOverlapMethod.toString(),
+ "--multi-map-method", multiMapMethod.toString(),
+ "--unspliced", unspliced.toString(),
+ "-O", outputPath
+ };
+
+ runCommandLine(args);
+
+ // Test for an exact match against past results
+ if ( ! UPDATE_MATCH_EXPECTED_OUTPUTS ) {
+ assertResultsEquivalent(output.toPath(), expected.toPath(), DEFAULT_LENIENCE);
+ }
+ }
+
+ @DataProvider(name = "testCompareReadStrandsDataProvider")
+ public Object[][] testCompareReadStrandsDataProvider() {
+ return new Object[][] {
+ {NA12878_20_RNAseq_bam, b37_20_gff3, "exon", false},
+ {E_COLI_RNAseq_bam, E_COLI_gff3, "CDS", true}
+ };
+ }
+
+ @Test(dataProvider = "testCompareReadStrandsDataProvider")
+ public void testCompareReadStrands(final String bamPath, final String gff3Path, final String overlapType, final Boolean unspliced) throws IOException {
+ final File output1 = createTempFile("testSwapTranscriptionRead1", ".tsv");
+ final File output2 = createTempFile("testSwapTranscriptionRead2", ".tsv");
+
+ for (final GeneExpressionEvaluation.ReadStrands readStrands1 : GeneExpressionEvaluation.ReadStrands.values()) {
+ for (final GeneExpressionEvaluation.ReadStrands readStrands2 : GeneExpressionEvaluation.ReadStrands.values()) {
+ if (readStrands1.r1TranscriptionStrand == readStrands2.r1TranscriptionStrand || readStrands1.r2TranscriptionStrand == readStrands2.r2TranscriptionStrand) {
+ //compare only full swaps for both read strands
+ continue;
+ }
+ final List args1 = new ArrayList<>(
+ Arrays.asList(
+ "-I", bamPath,
+ "-G", gff3Path,
+ "--grouping-type", "gene",
+ "--grouping-type", "pseudogene",
+ "--overlap-type", overlapType,
+ "--read-strands", readStrands1.name(),
+ "--unspliced", unspliced.toString(),
+ "-O", output1.getAbsolutePath()
+ )
+ );
+
+ final List args2 = new ArrayList<>(
+ Arrays.asList(
+ "-I", bamPath,
+ "-G", gff3Path,
+ "--grouping-type", "gene",
+ "--grouping-type", "pseudogene",
+ "--overlap-type", overlapType,
+ "--read-strands", readStrands2.name(),
+ "--unspliced", unspliced.toString(),
+ "-O", output2.getAbsolutePath()
+ )
+ );
+ runCommandLine(args1);
+ runCommandLine(args2);
+ assertResultsEquivalent(output1.toPath(), output2.toPath(), 0, true);
+ }
+ }
+ }
+
+ private void assertResultsEquivalent(final Path file1, final Path file2, final double lenience) throws IOException {
+ assertResultsEquivalent(file1, file2, lenience, false);
+ }
+
+ private void assertResultsEquivalent(final Path file1, final Path file2, final double lenience, final boolean swapSenseAntiSense) throws IOException {
+ final Map coverageMap1 = readCoverage(file1);
+ final Map coverageMap2 = readCoverage(file2);
+
+ Assert.assertEquals(coverageMap1.keySet(), coverageMap2.keySet());
+
+ for (final Map.Entry entry : coverageMap1.entrySet()) {
+ final Gff3BaseData feature = entry.getKey();
+ final GeneExpressionEvaluation.Coverage coverage1 = entry.getValue();
+
+ final GeneExpressionEvaluation.Coverage coverage2 = coverageMap2.get(feature);
+
+ assertEquivalentWithLenience(coverage1.getSenseCount(), swapSenseAntiSense? coverage2.getAntisenseCount() : coverage2.getSenseCount(), lenience);
+ assertEquivalentWithLenience(coverage2.getSenseCount(), swapSenseAntiSense? coverage1.getAntisenseCount() : coverage1.getSenseCount(), lenience);
+ }
+ }
+
+ private void assertEquivalentWithLenience(final double res1, final double res2, final double lenience) {
+ Assert.assertTrue(res1 >= 0);
+ Assert.assertTrue(res2 >= 0);
+ if (res1 + res2 > 0) {
+ Assert.assertTrue(2*Math.abs(res1 - res2)/(res1 + res2) <= lenience, "res1 = " + res1 + " res2 = " + res2);
+ }
+ }
+
+ private Map readCoverage(final Path file) throws IOException {
+ final GeneExpressionEvaluation.FragmentCountReader reader = new GeneExpressionEvaluation.FragmentCountReader(file);
+ final Map coverageMap = new LinkedHashMap<>();
+
+ for (final GeneExpressionEvaluation.SingleStrandFeatureCoverage singleStrandFeatureCoverage : reader) {
+ coverageMap.compute(
+ singleStrandFeatureCoverage.baseData, (k, v) -> v == null ?
+ (singleStrandFeatureCoverage.sense? new GeneExpressionEvaluation.Coverage(singleStrandFeatureCoverage.count, 0) :
+ new GeneExpressionEvaluation.Coverage(0, singleStrandFeatureCoverage.count)
+ ) :
+ (singleStrandFeatureCoverage.sense? new GeneExpressionEvaluation.Coverage(singleStrandFeatureCoverage.count, v.getAntisenseCount()) :
+ new GeneExpressionEvaluation.Coverage(v.getSenseCount(), singleStrandFeatureCoverage.count)
+ )
+ );
+ }
+ return coverageMap;
+ }
+}
+
diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationUnitTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationUnitTest.java
new file mode 100644
index 00000000000..71761d99fad
--- /dev/null
+++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluationUnitTest.java
@@ -0,0 +1,504 @@
+package org.broadinstitute.hellbender.tools.walkers.rnaseq;
+
+import htsjdk.samtools.SAMFileHeader;
+import htsjdk.samtools.SAMTag;
+import htsjdk.samtools.util.Interval;
+import htsjdk.samtools.util.OverlapDetector;
+import htsjdk.tribble.annotation.Strand;
+import htsjdk.tribble.gff.Gff3BaseData;
+import org.apache.commons.lang3.tuple.Pair;
+import org.broadinstitute.hellbender.GATKBaseTest;
+import org.broadinstitute.hellbender.utils.read.ArtificialReadUtils;
+import org.broadinstitute.hellbender.utils.read.GATKRead;
+import org.testng.Assert;
+import org.testng.annotations.DataProvider;
+import org.testng.annotations.Test;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+public class GeneExpressionEvaluationUnitTest extends GATKBaseTest {
+ private static final double DEFAULT_LENIENCE = 0.00001;
+
+ @Test
+ public void testInGoodPair() {
+ final SAMFileHeader header = ArtificialReadUtils.createArtificialSamHeader(2, 1, 10000);
+ final GATKRead read1 = ArtificialReadUtils.createArtificialRead(header,"theRead", 1, 200, 100);
+
+
+ read1.setMatePosition(read1.getContig(), 300);
+ read1.setMateIsReverseStrand(true);
+ read1.setIsProperlyPaired(true);
+ read1.setAttribute(SAMTag.MQ.toString(), 20);
+ read1.setFragmentLength(300);
+ read1.setAttribute(SAMTag.MC.toString(), "100M");
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+
+ //not properly paired
+ read1.setIsProperlyPaired(false);
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ read1.setIsProperlyPaired(true);
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+
+ //chimeric
+ read1.setMatePosition(header.getSequenceDictionary().getSequence(0).getSequenceName(), 300);
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ read1.setMatePosition(read1.getContig(), 300);
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+
+ //strand orientations
+ //reads are +-
+ //both on transcription strand or neither on transcription strand, bad
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD));
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE));
+ //one on transcription strand, other not, good
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD));
+
+ //reads are ++
+ read1.setMateIsReverseStrand(false);
+ //both on transcription strand or neither on transcription strand, good
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD));
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE));
+ //one on transcription strand, other not, bad
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD));
+
+ //reads are -+
+ read1.setIsReverseStrand(true);
+ //both on transcription strand or neither on transcription strand, bad
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD));
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE));
+ //one on transcription strand, other not, good
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD));
+
+ //reads are --
+ read1.setMateIsReverseStrand(true);
+ //both on transcription strand or neither on transcription strand, good
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD));
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE));
+ //one on transcription strand, other not, bad
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD));
+
+ //mate mapping quality too low
+ read1.setIsReverseStrand(false);
+ read1.setAttribute(SAMTag.MQ.toString(), -1);
+ Assert.assertFalse(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ read1.setAttribute(SAMTag.MQ.toString(), 20);
+ Assert.assertTrue(GeneExpressionEvaluation.inGoodPair(read1, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE));
+ }
+
+ @DataProvider(name = "testGetAlignmentIntervalsDataProvider")
+ public Object[][] testGetAlignmentIntervalsDataProvider() {
+ final SAMFileHeader header = ArtificialReadUtils.createArtificialSamHeader(1, 1, 10000);
+
+ final List examples = new ArrayList<>();
+ final GATKRead splicedRead = ArtificialReadUtils.createArtificialRead(header, "splicedRead", 0, 100, 150);
+ final String contig = splicedRead.getContig();
+ splicedRead.setCigar("10M35N64M2I27M22N35M5D12M");
+ pairRead(splicedRead, contig, 400, "50M25N100M");
+ final List expectedIntervalsSplicedRead = Arrays.asList(new Interval(contig, 100, 109),
+ new Interval(contig, 145, 235),
+ new Interval(contig, 258, 292),
+ new Interval(contig, 298, 309),
+ new Interval(contig, 400, 449),
+ new Interval(contig, 475, 574)
+ );
+ examples.add(new Object[]{splicedRead, true, expectedIntervalsSplicedRead});
+
+ final GATKRead splicedReadReverseStrand = ArtificialReadUtils.createArtificialRead(header, "splicedRead", 0, 400, 150);
+ splicedReadReverseStrand.setCigar("50M25N100M");
+ splicedReadReverseStrand.setIsReverseStrand(true);
+ pairRead(splicedReadReverseStrand, contig, 100, "10M35N64M2I27M22N35M5D12M");
+ examples.add(new Object[]{splicedReadReverseStrand, true, expectedIntervalsSplicedRead});
+
+ final GATKRead splicedReadImproperlyPaired = ArtificialReadUtils.createArtificialRead(header, "splicedRead", 0, 100, 150);
+ splicedReadImproperlyPaired.setCigar("10M35N64M2I27M22N35M5D12M");
+ pairRead(splicedReadImproperlyPaired, contig, 400, "50M25N100M");
+ splicedReadImproperlyPaired.setIsProperlyPaired(false);
+ examples.add(new Object[]{splicedReadImproperlyPaired, true, Arrays.asList(new Interval(contig, 100, 109),
+ new Interval(contig, 145, 235),
+ new Interval(contig, 258, 292),
+ new Interval(contig, 298, 309)
+ )
+ }
+ );
+
+ final GATKRead splicedReadImproperlyPairedReverseStrand = ArtificialReadUtils.createArtificialRead(header, "splicedRead", 0, 400, 150);
+ splicedReadImproperlyPairedReverseStrand.setCigar("50M25N100M");
+ splicedReadImproperlyPairedReverseStrand.setIsReverseStrand(true);
+ pairRead(splicedReadImproperlyPairedReverseStrand, contig, 100, "10M35N64M2I27M22N35M5D12M");
+ splicedReadImproperlyPairedReverseStrand.setIsProperlyPaired(false);
+ examples.add(new Object[]{splicedReadImproperlyPairedReverseStrand, true, Arrays.asList(new Interval(contig, 400, 449), new Interval(contig, 475, 574))}
+ );
+
+ final GATKRead splicedReadOverlappingMate = ArtificialReadUtils.createArtificialRead(header, "splicedRead", 0, 100, 150);
+ final List expectedIntervalsSplicedReadOverlappingMate = Arrays.asList(new Interval(contig, 100, 109),
+ new Interval(contig, 145, 235),
+ new Interval(contig, 258, 292),
+ new Interval(contig, 298, 349),
+ new Interval(contig, 375, 474)
+ );
+
+ splicedReadOverlappingMate.setCigar("10M35N64M2I27M22N35M5D12M");
+ pairRead(splicedReadOverlappingMate, contig, 300, "50M25N100M");
+ examples.add(new Object[]{splicedReadOverlappingMate, true, expectedIntervalsSplicedReadOverlappingMate});
+
+ final GATKRead splicedReadOverlappingMateReverseStrand = ArtificialReadUtils.createArtificialRead(header, "splicedRead", 0, 300, 150);
+ splicedReadOverlappingMateReverseStrand.setCigar("50M25N100M");
+ splicedReadOverlappingMateReverseStrand.setIsReverseStrand(true);
+ pairRead(splicedReadOverlappingMateReverseStrand, contig, 100, "10M35N64M2I27M22N35M5D12M");
+ examples.add(new Object[]{splicedReadOverlappingMateReverseStrand, true, expectedIntervalsSplicedReadOverlappingMate});
+
+ final GATKRead unsplicedRead = ArtificialReadUtils.createArtificialRead(header, "unsplicedRead", 0, 100, 150);
+ final List expectedIntervalsUnsplicedRead = Collections.singletonList(new Interval(contig, 100, 449));
+ unsplicedRead.setCigar("150M");
+ pairRead(unsplicedRead, contig, 300, "150M");
+ unsplicedRead.setFragmentLength(350);
+ examples.add(new Object[]{unsplicedRead, false, expectedIntervalsUnsplicedRead}
+ );
+
+ final GATKRead unsplicedReadReverseStrand = ArtificialReadUtils.createArtificialRead(header, "unsplicedRead", 0, 300, 150);
+ unsplicedReadReverseStrand.setCigar("150M");
+ unsplicedReadReverseStrand.setIsReverseStrand(true);
+ pairRead(unsplicedReadReverseStrand, contig, 100, "150M");
+ unsplicedReadReverseStrand.setFragmentLength(-350);
+ examples.add(new Object[]{unsplicedReadReverseStrand, false, expectedIntervalsUnsplicedRead}
+ );
+
+ final GATKRead unsplicedReadImproperlyPaired = ArtificialReadUtils.createArtificialRead(header, "unsplicedRead", 0, 100, 150);
+ unsplicedReadImproperlyPaired.setCigar("150M");
+ pairRead(unsplicedReadImproperlyPaired, contig, 300, "150M");
+ unsplicedReadImproperlyPaired.setIsProperlyPaired(false);
+ unsplicedReadImproperlyPaired.setFragmentLength(350);
+ examples.add(new Object[]{unsplicedReadImproperlyPaired, false, Collections.singletonList(new Interval(contig, 100, 249))});
+
+ final GATKRead unsplicedReadImproperlyPairedReverseStrand = ArtificialReadUtils.createArtificialRead(header, "unsplicedRead", 0, 300, 150);
+ unsplicedReadImproperlyPairedReverseStrand.setCigar("150M");
+ unsplicedReadImproperlyPairedReverseStrand.setIsReverseStrand(true);
+ pairRead(unsplicedReadImproperlyPairedReverseStrand, contig, 100, "150M");
+ unsplicedReadImproperlyPairedReverseStrand.setIsProperlyPaired(false);
+ unsplicedReadImproperlyPairedReverseStrand.setFragmentLength(-350);
+ examples.add(new Object[]{unsplicedReadImproperlyPairedReverseStrand, false, Collections.singletonList(new Interval(contig, 300, 449))});
+
+
+ return examples.toArray(new Object[0][]);
+ }
+
+ private void pairRead(final GATKRead read, final String mateContig, final int mateStart, final String mateCigar) {
+ read.setIsProperlyPaired(true);
+ read.setMatePosition(mateContig, mateStart);
+ read.setMateIsReverseStrand(!read.isReverseStrand());
+ read.setAttribute(SAMTag.MQ.toString(), 20);
+ read.setAttribute(SAMTag.MC.toString(), mateCigar);
+ }
+
+ @Test(dataProvider = "testGetAlignmentIntervalsDataProvider")
+ public void testGetAlignmentIntervals(final GATKRead read, final boolean spliced, final List expectedAlignmentIntervals) {
+ Assert.assertEquals(GeneExpressionEvaluation.getAlignmentIntervals(read, !spliced, 0, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE), expectedAlignmentIntervals);
+ }
+
+ @DataProvider(name = "testSenseAntisenseDataProvider")
+ public Object[][] testSenseAntisenseDataProvider() {
+ final Gff3BaseData forwardFeature = new Gff3BaseData("1", ".", "gene", 1, 100, -1d, Strand.POSITIVE, 0, Collections.emptyMap());
+ final Gff3BaseData reverseFeature = new Gff3BaseData("1", ".", "gene", 1, 100, -1d, Strand.NEGATIVE, 0, Collections.emptyMap());
+ final Gff3BaseData unstrandedFeature = new Gff3BaseData("1", ".", "gene", 1, 100, -1d, Strand.NONE, 0, Collections.emptyMap());
+
+ final List examples = new ArrayList<>();
+ final GATKRead read1Forward = getReadForStrandTest(false, true);
+ examples.add(new Object[]{read1Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, true});
+ examples.add(new Object[]{read1Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, true});
+ examples.add(new Object[]{read1Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, false});
+ examples.add(new Object[]{read1Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, false});
+
+ examples.add(new Object[]{read1Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, true});
+ examples.add(new Object[]{read1Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, true});
+ examples.add(new Object[]{read1Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, false});
+ examples.add(new Object[]{read1Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, false});
+
+ examples.add(new Object[]{read1Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, false});
+ examples.add(new Object[]{read1Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, false});
+ examples.add(new Object[]{read1Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, true});
+ examples.add(new Object[]{read1Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, true});
+
+ final GATKRead read1Reverse = getReadForStrandTest(true, true);
+ examples.add(new Object[]{read1Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, false});
+ examples.add(new Object[]{read1Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, false});
+ examples.add(new Object[]{read1Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, true});
+ examples.add(new Object[]{read1Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, true});
+
+ examples.add(new Object[]{read1Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, false});
+ examples.add(new Object[]{read1Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, false});
+ examples.add(new Object[]{read1Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, true});
+ examples.add(new Object[]{read1Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, true});
+
+ examples.add(new Object[]{read1Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, true});
+ examples.add(new Object[]{read1Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, true});
+ examples.add(new Object[]{read1Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, false});
+ examples.add(new Object[]{read1Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, false});
+
+ final GATKRead read2Forward = getReadForStrandTest(false, false);
+ examples.add(new Object[]{read2Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, true});
+ examples.add(new Object[]{read2Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, false});
+ examples.add(new Object[]{read2Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, true});
+ examples.add(new Object[]{read2Forward, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, false});
+
+ examples.add(new Object[]{read2Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, true});
+ examples.add(new Object[]{read2Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, false});
+ examples.add(new Object[]{read2Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, true});
+ examples.add(new Object[]{read2Forward, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, false});
+
+ examples.add(new Object[]{read2Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, false});
+ examples.add(new Object[]{read2Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, true});
+ examples.add(new Object[]{read2Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, false});
+ examples.add(new Object[]{read2Forward, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, true});
+
+ final GATKRead read2Reverse = getReadForStrandTest(true, false);
+ examples.add(new Object[]{read2Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, false});
+ examples.add(new Object[]{read2Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, true});
+ examples.add(new Object[]{read2Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, false});
+ examples.add(new Object[]{read2Reverse, forwardFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, true});
+
+ examples.add(new Object[]{read2Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, false});
+ examples.add(new Object[]{read2Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, true});
+ examples.add(new Object[]{read2Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, false});
+ examples.add(new Object[]{read2Reverse, unstrandedFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, true});
+
+ examples.add(new Object[]{read2Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_FORWARD, true});
+ examples.add(new Object[]{read2Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.FORWARD_REVERSE, false});
+ examples.add(new Object[]{read2Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_FORWARD, true});
+ examples.add(new Object[]{read2Reverse, reverseFeature, GeneExpressionEvaluation.ReadStrands.REVERSE_REVERSE, false});
+ return examples.toArray(new Object[0][]);
+ }
+
+ private GATKRead getReadForStrandTest(final boolean isReverseStrand, final boolean isFirstOfPair) {
+ final GATKRead read = ArtificialReadUtils.createArtificialRead("150M");
+ read.setIsReverseStrand(isReverseStrand);
+ if (isFirstOfPair) {
+ read.setIsFirstOfPair();
+ } else {
+ read.setIsSecondOfPair();
+ }
+
+ return read;
+ }
+
+ @Test(dataProvider = "testSenseAntisenseDataProvider")
+ public void testSenseAntisense(final GATKRead read, final Gff3BaseData feature, final GeneExpressionEvaluation.ReadStrands readStrands, final boolean expectedSense) {
+ final boolean actualSense = readStrands.isSense(read, feature);
+ Assert.assertEquals(actualSense, expectedSense);
+ }
+
+
+ @DataProvider(name = "testMultiOverlapMethodDataProvider")
+ public Object[][] testMultiOverlapMethodDataProvider() {
+ /*
+ first, build overlap detector. three genes in play
+
+ 150-250 350-450
+ gene1 -------- --------
+ 225-300 500-600
+ gene2 --------- --------
+ 100-200 400-410
+ gene3 ------- ---
+ */
+
+ final Gff3BaseData gene1 = new Gff3BaseData("theContig", ".", "gene", 150, 450, -1d, Strand.POSITIVE, 0, Collections.singletonMap("ID", Collections.singletonList("gene1")));
+ final Gff3BaseData gene2 = new Gff3BaseData("theContig", ".", "gene", 225, 600, -1d, Strand.POSITIVE, 0, Collections.singletonMap("ID", Collections.singletonList("gene2")));
+ final Gff3BaseData gene3 = new Gff3BaseData("theContig", ".", "gene", 100, 410, -1d, Strand.POSITIVE, 0, Collections.singletonMap("ID", Collections.singletonList("gene3")));
+
+ final OverlapDetector> featureOverlapDetector = new OverlapDetector<>(0,0);
+ //gene1 overlaps
+ for (final Interval interval : Arrays.asList(new Interval("theContig", 150, 250), new Interval("theContig", 350, 450))) {
+ featureOverlapDetector.addLhs(Pair.of(gene1, interval), interval);
+ }
+
+ //gene2 overlaps
+ for (final Interval interval : Arrays.asList(new Interval("theContig", 225, 300), new Interval("theContig", 500, 600))) {
+ featureOverlapDetector.addLhs(Pair.of(gene2, interval), interval);
+ }
+
+ //gene3 overlaps
+ for (final Interval interval : Arrays.asList(new Interval("theContig", 100, 200), new Interval("theContig", 400, 410))) {
+ featureOverlapDetector.addLhs(Pair.of(gene3, interval), interval);
+ }
+
+ final List examples = new ArrayList<>();
+
+ /*
+ alignments overlap none of genes, expect empty map
+
+ 150-250 350-450
+ gene1 -------- --------
+ 225-300 500-600
+ gene2 --------- --------
+ 100-200 400-410
+ gene3 ------- ---
+ 20-75 325-340 700-750
+ alignments *** ** ********
+ */
+ final List noOverlapAlignments = Arrays.asList(new Interval("theContig", 20, 75), new Interval("theContig", 325, 340), new Interval("theContig", 700,750));
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, noOverlapAlignments, featureOverlapDetector, Collections.emptyMap()});
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, noOverlapAlignments, featureOverlapDetector, Collections.emptyMap()});
+
+ /*
+ alignments overlap only gene1, but not fully contained in gene1 exons
+
+ 150-250 350-450
+ gene1 -------- --------
+ 225-300 500-600
+ gene2 --------- --------
+ 100-200 400-410
+ gene3 ------- ---
+ 325-375 440-460
+ alignments *** **
+ */
+ final List overlapGene1Alignments = Arrays.asList(new Interval("theContig", 325, 375), new Interval("theContig", 440, 460));
+ //for EQUAL method, gene1 has weight 1
+ final Map overlapGene1EqualWeights = Collections.singletonMap(gene1, (double)1);
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, overlapGene1Alignments, featureOverlapDetector, overlapGene1EqualWeights});
+
+ //for PROPORTIONAL method, alignments are 72 bases, with 37 overlapping gene1. So gene1 has weight 37/72
+ final Map overlapGene1ProportionalWeights = Collections.singletonMap(gene1, (double)37/(double)72);
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, overlapGene1Alignments, featureOverlapDetector, overlapGene1ProportionalWeights});
+
+ /*
+ alignments overlap gene1 and gene3
+
+ 150-250 350-450
+ gene1 -------- --------
+ 225-300 500-600
+ gene2 --------- --------
+ 100-200 400-410
+ gene3 ------- ---
+ 125-200 400-410
+ alignments ***** ***
+ */
+ final List overlapGene1AndGene3Alignments = Arrays.asList(new Interval("theContig", 125, 200), new Interval("theContig", 400, 410));
+ //for EQUAL method, gene1 and gene 3 both have weight 1/2
+ final Map overlapGene1Gene3EqualWeights = new HashMap<>();
+ Arrays.asList(gene1,gene3).forEach(g -> overlapGene1Gene3EqualWeights.put(g, (double)1/(double)2));
+
+
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, overlapGene1AndGene3Alignments, featureOverlapDetector, overlapGene1Gene3EqualWeights});
+ /* for PROPORTIONAL METHOD
+ gene1 alignment bases: 51 + 11 = 62
+ gene2 alignment bases: 0
+ gene3 alignment bases: 76 + 11 = 87
+ off gene alignment bases: 0
+ gene1 weight = 62/(62+87)
+ gene3 weight = 87/(62+87)
+ */
+ final Map overlapGene1Gene3ProportionalWeights = new HashMap<>();
+ overlapGene1Gene3ProportionalWeights.put(gene1, (double)62/(double)(62 + 87));
+ overlapGene1Gene3ProportionalWeights.put(gene3, (double)87/(double)(62 + 87));
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, overlapGene1AndGene3Alignments, featureOverlapDetector, overlapGene1Gene3ProportionalWeights});
+
+ /*
+ alignments overlap all three genes, and extend into region covered my none of genes
+
+ 150-250 350-450
+ gene1 -------- --------
+ 225-300 500-600
+ gene2 --------- --------
+ 100-200 400-410
+ gene3 ------- ---
+ 175-250 400-525
+ alignments ******* *******
+ */
+
+ final List overlapAll3Alignments = Arrays.asList(new Interval("theContig", 175, 250), new Interval("theContig", 400, 525));
+ //for EQUAL method, all three genes have wight 1/3
+ final Map overlapAll3EqualWeights = new HashMap<>();
+ Arrays.asList(gene1, gene2, gene3).forEach(g -> overlapAll3EqualWeights.put(g, (double)1/(double)3));
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.EQUAL, overlapAll3Alignments, featureOverlapDetector, overlapAll3EqualWeights});
+ /* for PROPORTIONAL METHOD
+ gene1 alignment bases: 76 + 51 = 127
+ gene2 alignment bases: 26 + 26 = 52
+ gene3 alignment bases: 26 + 11 = 37
+ off gene alignment bases: 49
+ gene1 weight = 127/(127 + 52 + 37 + 49)
+ gene2 weight = 52/(127 + 52 + 37 + 49)
+ gene3 weight = 37/(127 + 52 + 37 + 49)
+ */
+ final Map overlapAll3ProportionalWeights = new HashMap<>();
+ overlapAll3ProportionalWeights.put(gene1, (double)127/(double)(127 + 52 + 37 + 49));
+ overlapAll3ProportionalWeights.put(gene2, (double)52/(double)(127 + 52 + 37 + 49));
+ overlapAll3ProportionalWeights.put(gene3, (double)37/(double)(127 + 52 + 37 + 49));
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiOverlapMethod.PROPORTIONAL, overlapAll3Alignments, featureOverlapDetector, overlapAll3ProportionalWeights});
+
+
+ return examples.toArray(new Object[0][]);
+ }
+
+ @Test(dataProvider = "testMultiOverlapMethodDataProvider")
+ public void testMultiOverlapMethod(final GeneExpressionEvaluation.MultiOverlapMethod multiOverlapMethod, final List alignmentIntervals, final OverlapDetector> featureOverlapDetector,
+ final Map expectedWeights) {
+ final Map actualWeights = multiOverlapMethod.getWeights(alignmentIntervals, featureOverlapDetector);
+ assertWeightMapsEquivalent(actualWeights, expectedWeights);
+ }
+
+ @DataProvider(name = "testMultiMapMethodDataProvider")
+ public Object[][] testMultiMapMethodDataProvider() {
+ final Gff3BaseData gene1 = new Gff3BaseData("theContig", ".", "gene", 150, 450, -1d, Strand.POSITIVE, 0, Collections.singletonMap("ID", Collections.singletonList("gene1")));
+ final Gff3BaseData gene2 = new Gff3BaseData("theContig", ".", "gene", 225, 600, -1d, Strand.POSITIVE, 0, Collections.singletonMap("ID", Collections.singletonList("gene2")));
+ final Gff3BaseData gene3 = new Gff3BaseData("theContig", ".", "gene", 100, 410, -1d, Strand.POSITIVE, 0, Collections.singletonMap("ID", Collections.singletonList("gene3")));
+
+ final Map previousWeights = new HashMap<>();
+ previousWeights.put(gene1, (double)47/(double)3);
+ previousWeights.put(gene2, (double)93/(double)7);
+ previousWeights.put(gene3, (double)7653/(double)2);
+
+ final List examples = new ArrayList<>();
+
+
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiMapMethod.IGNORE, 1, previousWeights, previousWeights});
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiMapMethod.IGNORE, 3, previousWeights, Collections.emptyMap()});
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiMapMethod.IGNORE, 7, previousWeights, Collections.emptyMap()});
+
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiMapMethod.EQUAL, 1, previousWeights, previousWeights});
+
+ final Map expectedWeightsEqualNhits3 = new HashMap<>();
+ expectedWeightsEqualNhits3.put(gene1, (double)47/(double)(3*3));
+ expectedWeightsEqualNhits3.put(gene2, (double)93/(double)(7*3));
+ expectedWeightsEqualNhits3.put(gene3, (double)7653/(double)(2*3));
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiMapMethod.EQUAL, 3, previousWeights, expectedWeightsEqualNhits3});
+
+ final Map expectedWeightsEqualNhits7 = new HashMap<>();
+ expectedWeightsEqualNhits7.put(gene1, (double)47/(double)(3*7));
+ expectedWeightsEqualNhits7.put(gene2, (double)93/(double)(7*7));
+ expectedWeightsEqualNhits7.put(gene3, (double)7653/(double)(2*7));
+ examples.add(new Object[]{GeneExpressionEvaluation.MultiMapMethod.EQUAL, 7, previousWeights, expectedWeightsEqualNhits7});
+
+ return examples.toArray(new Object[0][]);
+ }
+
+ @Test(dataProvider = "testMultiMapMethodDataProvider")
+ public void testMultiMapMethod(final GeneExpressionEvaluation.MultiMapMethod multiMapMethod, final int nHits, final Map previousWeights, final Map expectedWeights) {
+ final Map actualWeights = multiMapMethod.getWeights(nHits, previousWeights);
+ assertWeightMapsEquivalent(actualWeights, expectedWeights);
+ }
+
+ private void assertWeightMapsEquivalent(final Map actualMap, final Map expectedMap) {
+ Assert.assertEquals(actualMap.keySet(), expectedMap.keySet());
+ for (final Map.Entry entry : actualMap.entrySet()) {
+ final T key = entry.getKey();
+ final double actualValue = entry.getValue();
+ final double expectedValue = expectedMap.get(key);
+
+ //should never have non-zero weights
+ Assert.assertTrue(actualValue >= 0);
+ Assert.assertTrue(expectedValue >= 0);
+
+ if (actualValue + expectedValue > 0) {
+ Assert.assertTrue(2 * Math.abs(actualValue - expectedValue) / (actualValue + expectedValue) <= DEFAULT_LENIENCE, " for key: " + key.toString() + " actual = " + actualValue + ", expected = " + expectedValue);
+ }
+ }
+ }
+}
diff --git a/src/test/resources/large/E_Coli.gff3 b/src/test/resources/large/E_Coli.gff3
new file mode 100644
index 00000000000..7ad8985c31f
--- /dev/null
+++ b/src/test/resources/large/E_Coli.gff3
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7a53b4439d83d445099c6e2966f74e6e53ae84c78e4cc8934302fef6bba13521
+size 2855144
diff --git a/src/test/resources/large/E_Coli.gff3.idx b/src/test/resources/large/E_Coli.gff3.idx
new file mode 100644
index 00000000000..73984a53357
--- /dev/null
+++ b/src/test/resources/large/E_Coli.gff3.idx
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
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new file mode 100644
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diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv
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+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/E_Coli_small_rna.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/E_Coli.gff3
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+bcr NC_000913.3 2278570 2279760 - sense 13.0
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+rsuA NC_000913.3 2279788 2280483 - sense 2.0
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+mqo NC_000913.3 2305108 2306754 - antisense 24.0
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+ada NC_000913.3 2309341 2310405 - antisense 64.0
+ftp NC_000913.3 2310479 2311534 - sense 0.0
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+ompC NC_000913.3 2311646 2312749 - sense 0.0
+ompC NC_000913.3 2311646 2312749 - antisense 84.0
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+rcsD NC_000913.3 2313488 2316160 + sense 27.5
+rcsD NC_000913.3 2313488 2316160 + antisense 168.5
+rcsB NC_000913.3 2316177 2316827 + sense 1.5
+rcsB NC_000913.3 2316177 2316827 + antisense 70.5
+rcsC NC_000913.3 2317027 2319876 - sense 10.0
+rcsC NC_000913.3 2317027 2319876 - antisense 27.0
+atoS NC_000913.3 2320043 2321869 + sense 9.0
+atoS NC_000913.3 2320043 2321869 + antisense 32.0
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diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv
new file mode 100644
index 00000000000..36319ffcfa8
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv
@@ -0,0 +1,9173 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/E_Coli_small_rna.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/E_Coli.gff3
+gene_label contig start stop strand sense_antisense sample1_counts
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+sgrR NC_000913.3 75644 77299 - sense 0.0
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+creC NC_000913.3 4636696 4638120 + antisense 0.0
+creD NC_000913.3 4638178 4639530 + sense 0.0
+creD NC_000913.3 4638178 4639530 + antisense 0.0
+arcA NC_000913.3 4639590 4640306 - sense 0.0
+arcA NC_000913.3 4639590 4640306 - antisense 0.0
+yjjY NC_000913.3 4640402 4640542 + sense 0.0
+yjjY NC_000913.3 4640402 4640542 + antisense 0.0
+yjtD NC_000913.3 4640942 4641628 + sense 0.0
+yjtD NC_000913.3 4640942 4641628 + antisense 0.0
diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv
new file mode 100644
index 00000000000..99f1ed5270f
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv
@@ -0,0 +1,9173 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/E_Coli_small_rna.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/E_Coli.gff3
+gene_label contig start stop strand sense_antisense sample1_counts
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+thrA NC_000913.3 337 2799 + sense 0.0
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+thrB NC_000913.3 2801 3733 + sense 0.0
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+yejG NC_000913.3 2277893 2278237 - antisense 7109.5
+bcr NC_000913.3 2278570 2279760 - sense 11.0
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+rsuA NC_000913.3 2279788 2280483 - sense 2.0
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+yejL NC_000913.3 2284129 2284356 + antisense 12.15
+yejM NC_000913.3 2284376 2286136 + sense 55.08
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+ccmH NC_000913.3 2291358 2292410 - sense 0.11
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+ftp NC_000913.3 2310479 2311534 - sense 0.0
+ftp NC_000913.3 2310479 2311534 - antisense 1.63
+ompC NC_000913.3 2311646 2312749 - sense 0.0
+ompC NC_000913.3 2311646 2312749 - antisense 74.96
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+rcsD NC_000913.3 2313488 2316160 + sense 27.75
+rcsD NC_000913.3 2313488 2316160 + antisense 166.94
+rcsB NC_000913.3 2316177 2316827 + sense 0.03
+rcsB NC_000913.3 2316177 2316827 + antisense 53.53
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+atoS NC_000913.3 2320043 2321869 + sense 9.0
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+yfaQ NC_000913.3 2328148 2329797 - sense 3.0
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+yfaS NC_000913.3 2329798 2334402 - sense 4.0
+yfaS NC_000913.3 2329798 2334402 - antisense 7.0
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+yfaA NC_000913.3 2334956 2336644 - sense 1.73
+yfaA NC_000913.3 2334956 2336644 - antisense 5.0
+gyrA NC_000913.3 2336793 2339420 - sense 7.0
+gyrA NC_000913.3 2336793 2339420 - antisense 88.92
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+yfaL NC_000913.3 2340417 2344169 - sense 0.0
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+ypaB NC_000913.3 2344594 2344737 - sense 0.0
+ypaB NC_000913.3 2344594 2344737 - antisense 3.49
+nrdA NC_000913.3 2344865 2347150 + sense 9.26
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+nrdB NC_000913.3 2347384 2348514 + sense 0.0
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+yfaE NC_000913.3 2348514 2348768 + sense 0.0
+yfaE NC_000913.3 2348514 2348768 + antisense 0.3
+inaA NC_000913.3 2348822 2349472 - sense 0.0
+inaA NC_000913.3 2348822 2349472 - antisense 63.64
+yfaH NC_000913.3 2349687 2349893 + sense 4.6
+yfaH NC_000913.3 2349687 2349893 + antisense 1.63
+glpQ NC_000913.3 2349935 2351011 - sense 0.2
+glpQ NC_000913.3 2349935 2351011 - antisense 49.58
+glpT NC_000913.3 2351016 2352374 - sense 0.0
+glpT NC_000913.3 2351016 2352374 - antisense 1.0
+glpA NC_000913.3 2352647 2354275 + sense 0.0
+glpA NC_000913.3 2352647 2354275 + antisense 0.0
+glpB NC_000913.3 2354265 2355524 + sense 2.0
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+yjjX NC_000913.3 4633233 4633745 - sense 0.0
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+creA NC_000913.3 4635521 4635994 + sense 0.0
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+creD NC_000913.3 4638178 4639530 + sense 0.0
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+yjtD NC_000913.3 4640942 4641628 + sense 0.0
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diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv
new file mode 100644
index 00000000000..b1647b5529b
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv
@@ -0,0 +1,9173 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/E_Coli_small_rna.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/E_Coli.gff3
+gene_label contig start stop strand sense_antisense sample1_counts
+thrL NC_000913.3 190 255 + sense 0.0
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+thrA NC_000913.3 337 2799 + sense 0.0
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+thrB NC_000913.3 2801 3733 + sense 0.0
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+thrC NC_000913.3 3734 5020 + sense 0.0
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+yaaX NC_000913.3 5234 5530 + sense 0.0
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+yaaA NC_000913.3 5683 6459 - sense 0.0
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+yaaJ NC_000913.3 6529 7959 - sense 0.0
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+mbiA NC_000913.3 10830 11315 + sense 0.0
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+nhaR NC_000913.3 18715 19620 + sense 0.0
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+insB-1 NC_000913.3 19811 20314 - sense 0.0
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+rpsT NC_000913.3 20815 21078 - sense 0.0
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+kefC NC_000913.3 47769 49631 + sense 0.0
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+rluA NC_000913.3 59687 60346 - sense 0.0
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+rapA NC_000913.3 60358 63264 - sense 0.0
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+araC NC_000913.3 70387 71265 + sense 0.0
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+yabI NC_000913.3 71351 72115 + sense 0.0
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+thiQ NC_000913.3 72229 72927 - sense 0.0
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+thiP NC_000913.3 72911 74521 - sense 0.0
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+thiB NC_000913.3 74497 75480 - sense 0.0
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+sgrR NC_000913.3 75644 77299 - sense 0.0
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+sgrS NC_000913.3 77367 77593 + sense 0.0
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+setA NC_000913.3 77621 78799 + sense 0.0
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+leuD NC_000913.3 78848 79453 - sense 0.0
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+leuC NC_000913.3 79464 80864 - sense 0.0
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+leuB NC_000913.3 80867 81958 - sense 0.0
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+leuA NC_000913.3 81958 83529 - sense 0.0
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+leuL NC_000913.3 83622 83708 - sense 0.0
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+leuO NC_000913.3 84368 85312 + sense 0.0
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+yabR NC_000913.3 85467 85511 - sense 0.0
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+ilvI NC_000913.3 85630 87354 + sense 0.0
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+ilvH NC_000913.3 87357 87848 + sense 0.0
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+cra NC_000913.3 88028 89032 + sense 0.0
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+mraZ NC_000913.3 89634 90092 + sense 0.0
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+rsmH NC_000913.3 90094 91035 + sense 0.0
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+ftsL NC_000913.3 91032 91397 + sense 0.0
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+ftsI NC_000913.3 91413 93179 + sense 0.0
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+murE NC_000913.3 93166 94653 + sense 0.0
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+murF NC_000913.3 94650 96008 + sense 0.0
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+murC NC_000913.3 100765 102240 + sense 0.0
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+ddlB NC_000913.3 102233 103153 + sense 0.0
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+ftsQ NC_000913.3 103155 103985 + sense 0.0
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+bcr NC_000913.3 2278570 2279760 - sense 11.0
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diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv
new file mode 100644
index 00000000000..fef2141ab9f
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv
@@ -0,0 +1,2637 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3
+gene_label contig start stop strand sense_antisense NA12878.star_counts
+DEFB125 20 67891 77735 + sense 0.0
+DEFB125 20 67891 77735 + antisense 0.0
+DEFB126 20 123010 126392 + sense 0.0
+DEFB126 20 123010 126392 + antisense 0.0
+DEFB127 20 138111 139804 + sense 0.0
+DEFB127 20 138111 139804 + antisense 0.0
+DEFB128 20 168494 170322 - sense 0.0
+DEFB128 20 168494 170322 - antisense 0.0
+AL360078.1 20 172864 172940 - sense 0.0
+AL360078.1 20 172864 172940 - antisense 0.0
+DEFB129 20 207899 210527 + sense 0.0
+DEFB129 20 207899 210527 + antisense 0.0
+DEFB132 20 238377 241737 + sense 0.0
+DEFB132 20 238377 241737 + antisense 0.0
+RP5-1103G7.10 20 247827 249498 + sense 0.0
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+C20orf96 20 251504 271390 - sense 0.0
+C20orf96 20 251504 271390 - antisense 0.0
+ZCCHC3 20 277737 280965 + sense 0.0
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+AL034548.1 20 278214 280961 + sense 0.0
+AL034548.1 20 278214 280961 + antisense 0.0
+RP5-1103G7.4 20 300957 328868 - sense 0.0
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+SOX12 20 306207 310865 + sense 0.0
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+NRSN2 20 327426 340304 + sense 0.0
+NRSN2 20 327426 340304 + antisense 0.0
+TRIB3 20 361261 378203 + sense 0.0
+TRIB3 20 361261 378203 + antisense 0.0
+RBCK1 20 388142 411610 + sense 0.0
+RBCK1 20 388142 411610 + antisense 0.0
+TBC1D20 20 416124 443197 - sense 0.0
+TBC1D20 20 416124 443197 - antisense 0.0
+Y_RNA 20 431307 431406 + sense 0.0
+Y_RNA 20 431307 431406 + antisense 0.0
+CSNK2A1 20 459116 524465 - sense 0.0
+CSNK2A1 20 459116 524465 - antisense 0.0
+TCF15 20 584441 591042 - sense 0.0
+TCF15 20 584441 591042 - antisense 0.0
+SRXN1 20 627259 634014 - sense 0.0
+SRXN1 20 627259 634014 - antisense 0.0
+RP5-850E9.3 20 627270 656444 - sense 0.0
+RP5-850E9.3 20 627270 656444 - antisense 0.0
+SCRT2 20 642240 656823 - sense 0.0
+SCRT2 20 642240 656823 - antisense 0.0
+SLC52A3 20 740724 749131 - sense 0.0
+SLC52A3 20 740724 749131 - antisense 0.0
+FAM110A 20 814358 838106 + sense 0.0
+FAM110A 20 814358 838106 + antisense 0.0
+RPS10L 20 820090 820620 - sense 0.0
+RPS10L 20 820090 820620 - antisense 0.0
+ANGPT4 20 853296 896977 - sense 0.0
+ANGPT4 20 853296 896977 - antisense 0.0
+RSPO4 20 939095 982907 - sense 0.0
+RSPO4 20 939095 982907 - antisense 0.0
+PSMF1 20 1093906 1160596 + sense 0.0
+PSMF1 20 1093906 1160596 + antisense 0.0
+ACTG1P3 20 1141228 1142341 + sense 0.0
+ACTG1P3 20 1141228 1142341 + antisense 0.0
+TMEM74B 20 1161205 1166059 - sense 0.0
+TMEM74B 20 1161205 1166059 - antisense 0.0
+C20orf202 20 1184098 1188918 + sense 0.0
+C20orf202 20 1184098 1188918 + antisense 0.0
+RAD21L1 20 1206700 1277065 + sense 0.0
+RAD21L1 20 1206700 1277065 + antisense 0.0
+SNPH 20 1246960 1289972 + sense 0.0
+SNPH 20 1246960 1289972 + antisense 0.0
+SDCBP2 20 1290619 1309883 - sense 0.0
+SDCBP2 20 1290619 1309883 - antisense 0.0
+SDCBP2-AS1 20 1306049 1359378 + sense 0.0
+SDCBP2-AS1 20 1306049 1359378 + antisense 0.0
+AL136531.1 20 1316228 1317555 - sense 0.0
+AL136531.1 20 1316228 1317555 - antisense 0.0
+RP11-314N13.3 20 1342266 1343229 + sense 0.0
+RP11-314N13.3 20 1342266 1343229 + antisense 0.0
+FKBP1A 20 1349622 1373806 - sense 0.0
+FKBP1A 20 1349622 1373806 - antisense 0.0
+NSFL1C 20 1422807 1454487 - sense 0.0
+NSFL1C 20 1422807 1454487 - antisense 0.0
+SIRPB2 20 1451386 1472233 - sense 0.0
+SIRPB2 20 1451386 1472233 - antisense 0.0
+AL109658.1 20 1469195 1469292 + sense 0.0
+AL109658.1 20 1469195 1469292 + antisense 0.0
+RP4-576H24.2 20 1497405 1538299 - sense 0.0
+RP4-576H24.2 20 1497405 1538299 - antisense 0.0
+RNU6-917P 20 1509702 1509805 - sense 0.0
+RNU6-917P 20 1509702 1509805 - antisense 0.0
+SIRPD 20 1514897 1539489 - sense 0.0
+SIRPD 20 1514897 1539489 - antisense 0.0
+RP4-576H24.4 20 1520790 1600655 - sense 0.0
+RP4-576H24.4 20 1520790 1600655 - antisense 0.0
+SIRPB1 20 1544167 1600707 - sense 0.0
+SIRPB1 20 1544167 1600707 - antisense 0.0
+RP4-576H24.5 20 1572038 1572494 + sense 0.0
+RP4-576H24.5 20 1572038 1572494 + antisense 0.0
+SIRPG 20 1609798 1638425 - sense 0.0
+SIRPG 20 1609798 1638425 - antisense 0.0
+RP11-77C3.3 20 1614154 1629118 + sense 0.0
+RP11-77C3.3 20 1614154 1629118 + antisense 0.0
+SIRPB3P 20 1645929 1688846 - sense 0.0
+SIRPB3P 20 1645929 1688846 - antisense 0.0
+RN7SL561P 20 1647006 1647284 + sense 0.0
+RN7SL561P 20 1647006 1647284 + antisense 0.0
+RP4-673D20.5 20 1657308 1657553 - sense 0.0
+RP4-673D20.5 20 1657308 1657553 - antisense 0.0
+RP4-673D20.4 20 1702691 1703183 - sense 0.0
+RP4-673D20.4 20 1702691 1703183 - antisense 0.0
+RP4-673D20.6 20 1737402 1739586 - sense 0.0
+RP4-673D20.6 20 1737402 1739586 - antisense 0.0
+RP4-673D20.3 20 1748603 1760641 - sense 0.0
+RP4-673D20.3 20 1748603 1760641 - antisense 0.0
+RP5-968J1.1 20 1784662 1798252 - sense 0.0
+RP5-968J1.1 20 1784662 1798252 - antisense 0.0
+SIRPA 20 1875154 1920543 + sense 0.0
+SIRPA 20 1875154 1920543 + antisense 0.0
+RP4-684O24.5 20 1927892 1988163 + sense 0.0
+RP4-684O24.5 20 1927892 1988163 + antisense 0.0
+PDYN 20 1959403 1974732 - sense 0.0
+PDYN 20 1959403 1974732 - antisense 0.0
+RPL7P2 20 2056201 2056468 + sense 0.0
+RPL7P2 20 2056201 2056468 + antisense 0.0
+STK35 20 2082257 2157684 + sense 0.0
+STK35 20 2082257 2157684 + antisense 0.0
+AL121899.1 20 2137858 2137927 - sense 0.0
+AL121899.1 20 2137858 2137927 - antisense 0.0
+RP11-128M1.1 20 2187863 2193797 + sense 0.0
+RP11-128M1.1 20 2187863 2193797 + antisense 0.0
+TGM3 20 2276647 2321724 + sense 0.0
+TGM3 20 2276647 2321724 + antisense 0.0
+TGM6 20 2361554 2413399 + sense 0.0
+TGM6 20 2361554 2413399 + antisense 0.0
+Y_RNA 20 2433656 2433763 - sense 0.0
+Y_RNA 20 2433656 2433763 - antisense 0.0
+SNRPB 20 2442280 2451499 - sense 26.0
+SNRPB 20 2442280 2451499 - antisense 430.5
+SNORD119 20 2443608 2443683 - sense 0.0
+SNORD119 20 2443608 2443683 - antisense 0.0
+RP4-734P14.4 20 2447858 2489553 - sense 26.0
+RP4-734P14.4 20 2447858 2489553 - antisense 425.5
+ZNF343 20 2462463 2505348 - sense 10.0
+ZNF343 20 2462463 2505348 - antisense 266.0
+TMC2 20 2517253 2622430 + sense 3.0
+TMC2 20 2517253 2622430 + antisense 0.0
+NOP56 20 2632791 2639039 + sense 111.5
+NOP56 20 2632791 2639039 + antisense 1983.25
+MIR1292 20 2633423 2633488 + sense 2.5
+MIR1292 20 2633423 2633488 + antisense 49.75
+SNORD110 20 2634858 2634932 + sense 0.0
+SNORD110 20 2634858 2634932 + antisense 24.5
+SNORA51 20 2635713 2635844 + sense 1.0
+SNORA51 20 2635713 2635844 + antisense 14.5
+SNORD86 20 2636743 2636828 + sense 6.5
+SNORD86 20 2636743 2636828 + antisense 96.33
+SNORD56 20 2637270 2637340 + sense 0.5
+SNORD56 20 2637270 2637340 + antisense 12.33
+SNORD57 20 2637585 2637656 + sense 2.0
+SNORD57 20 2637585 2637656 + antisense 22.17
+IDH3B 20 2639041 2644865 - sense 0.0
+IDH3B 20 2639041 2644865 - antisense 0.0
+RP4-686C3.7 20 2644998 2646520 + sense 0.0
+RP4-686C3.7 20 2644998 2646520 + antisense 0.0
+EBF4 20 2673524 2740753 + sense 0.0
+EBF4 20 2673524 2740753 + antisense 0.0
+AL035460.1 20 2677351 2677781 + sense 0.0
+AL035460.1 20 2677351 2677781 + antisense 0.0
+RPL19P1 20 2761260 2761687 + sense 0.0
+RPL19P1 20 2761260 2761687 + antisense 0.0
+CPXM1 20 2774715 2781283 - sense 0.0
+CPXM1 20 2774715 2781283 - antisense 0.0
+TMEM239 20 2795614 2798712 + sense 0.0
+TMEM239 20 2795614 2798712 + antisense 0.0
+TMEM239 20 2795614 2800930 + sense 0.0
+TMEM239 20 2795614 2800930 + antisense 0.0
+C20orf141 20 2795633 2796479 + sense 0.0
+C20orf141 20 2795633 2796479 + antisense 0.0
+PCED1A 20 2815960 2821836 - sense 0.0
+PCED1A 20 2815960 2821836 - antisense 0.0
+VPS16 20 2821349 2847378 + sense 0.0
+VPS16 20 2821349 2847378 + antisense 0.0
+PTPRA 20 2844830 3019722 + sense 0.0
+PTPRA 20 2844830 3019722 + antisense 0.0
+GNRH2 20 3024268 3026393 + sense 0.0
+GNRH2 20 3024268 3026393 + antisense 0.0
+MRPS26 20 3026591 3028900 + sense 0.0
+MRPS26 20 3026591 3028900 + antisense 0.0
+OXT 20 3052266 3053163 + sense 0.0
+OXT 20 3052266 3053163 + antisense 0.0
+AVP 20 3063202 3065370 - sense 0.0
+AVP 20 3063202 3065370 - antisense 0.0
+RN7SL555P 20 3074861 3075153 + sense 0.0
+RN7SL555P 20 3074861 3075153 + antisense 0.0
+UBOX5-AS1 20 3087559 3131513 + sense 0.0
+UBOX5-AS1 20 3087559 3131513 + antisense 0.0
+UBOX5 20 3088219 3140842 - sense 0.0
+UBOX5 20 3088219 3140842 - antisense 0.0
+FASTKD5 20 3127165 3140543 - sense 0.0
+FASTKD5 20 3127165 3140543 - antisense 0.0
+LZTS3 20 3143263 3154192 - sense 0.0
+LZTS3 20 3143263 3154192 - antisense 0.0
+DDRGK1 20 3170996 3185331 - sense 0.0
+DDRGK1 20 3170996 3185331 - antisense 0.0
+ITPA 20 3189514 3204516 + sense 0.0
+ITPA 20 3189514 3204516 + antisense 0.0
+SLC4A11 20 3208063 3219836 - sense 0.0
+SLC4A11 20 3208063 3219836 - antisense 0.0
+C20orf194 20 3229951 3388272 - sense 0.0
+C20orf194 20 3229951 3388272 - antisense 0.0
+RN7SL839P 20 3261065 3261355 + sense 0.0
+RN7SL839P 20 3261065 3261355 + antisense 0.0
+RNU6-1019P 20 3340683 3340789 + sense 0.0
+RNU6-1019P 20 3340683 3340789 + antisense 0.0
+UBE2V1P1 20 3342527 3342971 - sense 0.0
+UBE2V1P1 20 3342527 3342971 - antisense 0.0
+U3 20 3364876 3365086 + sense 0.0
+U3 20 3364876 3365086 + antisense 0.0
+AL117334.1 20 3384863 3384932 + sense 0.0
+AL117334.1 20 3384863 3384932 + antisense 0.0
+RP11-137F15.1 20 3445824 3446091 - sense 0.0
+RP11-137F15.1 20 3445824 3446091 - antisense 0.0
+ATRN 20 3451687 3631769 + sense 0.0
+ATRN 20 3451687 3631769 + antisense 0.0
+SF3A3P1 20 3470176 3471652 - sense 0.0
+SF3A3P1 20 3470176 3471652 - antisense 0.0
+AL109805.1 20 3487654 3487759 + sense 0.0
+AL109805.1 20 3487654 3487759 + antisense 0.0
+GFRA4 20 3639939 3644046 - sense 0.0
+GFRA4 20 3639939 3644046 - antisense 0.0
+ADAM33 20 3648612 3662893 - sense 0.0
+ADAM33 20 3648612 3662893 - antisense 0.0
+SIGLEC1 20 3667617 3687775 - sense 0.0
+SIGLEC1 20 3667617 3687775 - antisense 0.0
+HSPA12B 20 3713314 3733758 + sense 0.0
+HSPA12B 20 3713314 3733758 + antisense 0.0
+C20orf27 20 3734155 3749034 - sense 0.0
+C20orf27 20 3734155 3749034 - antisense 0.0
+SPEF1 20 3758151 3762095 - sense 0.0
+SPEF1 20 3758151 3762095 - antisense 0.0
+CENPB 20 3764498 3767337 - sense 0.0
+CENPB 20 3764498 3767337 - antisense 0.0
+CDC25B 20 3767578 3786762 + sense 0.0
+CDC25B 20 3767578 3786762 + antisense 0.0
+AP5S1 20 3801178 3805949 + sense 0.0
+AP5S1 20 3801178 3805949 + antisense 0.0
+MAVS 20 3827487 3849280 + sense 0.0
+MAVS 20 3827487 3849280 + antisense 0.0
+RP11-119B16.2 20 3868886 3869515 - sense 0.0
+RP11-119B16.2 20 3868886 3869515 - antisense 0.0
+PANK2 20 3869486 3907605 + sense 0.0
+PANK2 20 3869486 3907605 + antisense 0.0
+MIR103A2 20 3898141 3898218 + sense 0.0
+MIR103A2 20 3898141 3898218 + antisense 0.0
+RNF24 20 3907956 3996229 - sense 0.0
+RNF24 20 3907956 3996229 - antisense 0.0
+FTLP3 20 4004552 4005091 + sense 0.0
+FTLP3 20 4004552 4005091 + antisense 0.0
+RPL21P2 20 4040280 4040760 - sense 0.0
+RPL21P2 20 4040280 4040760 - antisense 0.0
+RP11-352D3.2 20 4050799 4055812 - sense 0.0
+RP11-352D3.2 20 4050799 4055812 - antisense 0.0
+SMOX 20 4101627 4168394 + sense 0.0
+SMOX 20 4101627 4168394 + antisense 0.0
+RP4-779E11.3 20 4173712 4176590 + sense 0.0
+RP4-779E11.3 20 4173712 4176590 + antisense 0.0
+ADRA1D 20 4201329 4229721 - sense 0.0
+ADRA1D 20 4201329 4229721 - antisense 0.0
+RP11-307O10.1 20 4411808 4412320 - sense 0.0
+RP11-307O10.1 20 4411808 4412320 - antisense 0.0
+RP5-1164C1.2 20 4456285 4505846 + sense 0.0
+RP5-1164C1.2 20 4456285 4505846 + antisense 0.0
+RPL7AL2 20 4571639 4571946 - sense 0.0
+RPL7AL2 20 4571639 4571946 - antisense 0.0
+RPS4XP2 20 4610073 4610865 - sense 0.0
+RPS4XP2 20 4610073 4610865 - antisense 0.0
+PRNP 20 4666882 4682236 + sense 0.0
+PRNP 20 4666882 4682236 + antisense 0.0
+PRND 20 4702556 4709106 + sense 0.0
+PRND 20 4702556 4709106 + antisense 0.0
+PRNT 20 4711928 4721314 - sense 0.0
+PRNT 20 4711928 4721314 - antisense 0.0
+RP5-1068H6.1 20 4716315 4717319 - sense 0.0
+RP5-1068H6.1 20 4716315 4717319 - antisense 0.0
+RASSF2 20 4760669 4804291 - sense 0.0
+RASSF2 20 4760669 4804291 - antisense 0.0
+SLC23A2 20 4833002 4990939 - sense 0.0
+SLC23A2 20 4833002 4990939 - antisense 0.0
+SNORA31 20 4849630 4849764 + sense 0.0
+SNORA31 20 4849630 4849764 + antisense 0.0
+snoU13 20 4863030 4863122 + sense 0.0
+snoU13 20 4863030 4863122 + antisense 0.0
+RP5-1116H23.1 20 4994166 4994370 - sense 0.0
+RP5-1116H23.1 20 4994166 4994370 - antisense 0.0
+RN7SL514P 20 5006365 5006628 + sense 0.0
+RN7SL514P 20 5006365 5006628 + antisense 0.0
+RNA5SP474 20 5079033 5079122 - sense 0.0
+RNA5SP474 20 5079033 5079122 - antisense 0.0
+TMEM230 20 5080486 5093749 - sense 0.0
+TMEM230 20 5080486 5093749 - antisense 0.0
+Y_RNA 20 5094639 5094729 - sense 0.0
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+PCNA 20 5095599 5107272 - sense 0.0
+PCNA 20 5095599 5107272 - antisense 0.0
+SNORA26 20 5102063 5102185 - sense 0.0
+SNORA26 20 5102063 5102185 - antisense 0.0
+CDS2 20 5107432 5178533 + sense 0.0
+CDS2 20 5107432 5178533 + antisense 0.0
+UBE2D3P1 20 5273034 5273477 - sense 0.0
+UBE2D3P1 20 5273034 5273477 - antisense 0.0
+PROKR2 20 5282317 5297378 - sense 0.0
+PROKR2 20 5282317 5297378 - antisense 0.0
+RNA5-8SP7 20 5326652 5326806 - sense 0.0
+RNA5-8SP7 20 5326652 5326806 - antisense 0.0
+LINC00658 20 5407541 5451740 - sense 0.0
+LINC00658 20 5407541 5451740 - antisense 0.0
+RP5-828H9.1 20 5451853 5455828 + sense 0.0
+RP5-828H9.1 20 5451853 5455828 + antisense 0.0
+LINC00654 20 5476713 5485259 - sense 0.0
+LINC00654 20 5476713 5485259 - antisense 0.0
+RP5-1022P6.7 20 5479762 5483527 + sense 0.0
+RP5-1022P6.7 20 5479762 5483527 + antisense 0.0
+RP5-1022P6.4 20 5488521 5490648 - sense 0.0
+RP5-1022P6.4 20 5488521 5490648 - antisense 0.0
+RPS18P1 20 5513524 5513981 + sense 0.0
+RPS18P1 20 5513524 5513981 + antisense 0.0
+RP5-1022P6.5 20 5514274 5516535 + sense 0.0
+RP5-1022P6.5 20 5514274 5516535 + antisense 0.0
+GPCPD1 20 5525085 5591672 - sense 0.0
+GPCPD1 20 5525085 5591672 - antisense 0.0
+RP5-1022P6.3 20 5529486 5530127 + sense 0.0
+RP5-1022P6.3 20 5529486 5530127 + antisense 0.0
+C20orf196 20 5731039 5844558 + sense 0.0
+C20orf196 20 5731039 5844558 + antisense 0.0
+RNU1-55P 20 5870701 5870858 + sense 0.0
+RNU1-55P 20 5870701 5870858 + antisense 0.0
+CHGB 20 5892076 5906007 + sense 0.0
+CHGB 20 5892076 5906007 + antisense 0.0
+RP5-967N21.2 20 5908731 5909964 - sense 0.0
+RP5-967N21.2 20 5908731 5909964 - antisense 0.0
+TRMT6 20 5917881 5931182 - sense 0.0
+TRMT6 20 5917881 5931182 - antisense 0.0
+MCM8 20 5931298 5975852 + sense 0.0
+MCM8 20 5931298 5975852 + antisense 0.0
+Y_RNA 20 5945184 5945296 + sense 0.0
+Y_RNA 20 5945184 5945296 + antisense 0.0
+RP5-967N21.7 20 5945826 5946157 + sense 0.0
+RP5-967N21.7 20 5945826 5946157 + antisense 0.0
+RN7SL498P 20 5982379 5982674 + sense 0.0
+RN7SL498P 20 5982379 5982674 + antisense 0.0
+CRLS1 20 5986736 6020699 + sense 0.0
+CRLS1 20 5986736 6020699 + antisense 0.0
+LRRN4 20 6021424 6034695 - sense 0.0
+LRRN4 20 6021424 6034695 - antisense 0.0
+FERMT1 20 6055492 6104191 - sense 0.0
+FERMT1 20 6055492 6104191 - antisense 0.0
+TARDBPP1 20 6181636 6182838 - sense 0.0
+TARDBPP1 20 6181636 6182838 - antisense 0.0
+RP4-775C13.1 20 6194346 6196028 + sense 0.0
+RP4-775C13.1 20 6194346 6196028 + antisense 0.0
+RP4-775C13.2 20 6199846 6200090 + sense 0.0
+RP4-775C13.2 20 6199846 6200090 + antisense 0.0
+AL109618.1 20 6209441 6209595 - sense 0.0
+AL109618.1 20 6209441 6209595 - antisense 0.0
+CASC20 20 6427370 6509106 + sense 0.0
+CASC20 20 6427370 6509106 + antisense 0.0
+RP5-859D4.3 20 6711905 6716783 - sense 0.0
+RP5-859D4.3 20 6711905 6716783 - antisense 0.0
+BMP2 20 6748311 6760927 + sense 0.0
+BMP2 20 6748311 6760927 + antisense 0.0
+snoR26 20 6841661 6841755 + sense 0.0
+snoR26 20 6841661 6841755 + antisense 0.0
+RP4-764O22.1 20 7050261 7127303 + sense 0.0
+RP4-764O22.1 20 7050261 7127303 + antisense 0.0
+RP4-764O22.2 20 7127114 7234849 - sense 0.0
+RP4-764O22.2 20 7127114 7234849 - antisense 0.0
+RP11-19D2.1 20 7237227 7238861 - sense 0.0
+RP11-19D2.1 20 7237227 7238861 - antisense 0.0
+RP11-19D2.2 20 7282703 7288079 - sense 0.0
+RP11-19D2.2 20 7282703 7288079 - antisense 0.0
+RP5-988G17.1 20 7328114 7348279 + sense 0.0
+RP5-988G17.1 20 7328114 7348279 + antisense 0.0
+RN7SL547P 20 7614211 7614498 - sense 0.0
+RN7SL547P 20 7614211 7614498 - antisense 0.0
+AL031653.1 20 7677533 7677624 - sense 0.0
+AL031653.1 20 7677533 7677624 - antisense 0.0
+RP5-836E8.1 20 7812445 7812969 - sense 0.0
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+HAO1 20 7863628 7921121 - sense 0.0
+HAO1 20 7863628 7921121 - antisense 0.0
+TMX4 20 7957995 8000476 - sense 0.0
+TMX4 20 7957995 8000476 - antisense 0.0
+RP5-971N18.3 20 7999870 8024159 + sense 0.0
+RP5-971N18.3 20 7999870 8024159 + antisense 0.0
+PHKBP1 20 8078471 8080421 - sense 0.0
+PHKBP1 20 8078471 8080421 - antisense 0.0
+PLCB1 20 8112824 8949003 + sense 0.0
+PLCB1 20 8112824 8949003 + antisense 0.0
+PLCB1-IT1 20 8229351 8237564 + sense 0.0
+PLCB1-IT1 20 8229351 8237564 + antisense 0.0
+AL031655.1 20 8589827 8589912 + sense 0.0
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+AL031655.2 20 8590801 8590887 - sense 0.0
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+RNU105B 20 8811833 8812040 + sense 0.0
+RNU105B 20 8811833 8812040 + antisense 0.0
+RP5-859I17.2 20 8910542 8910685 - sense 0.0
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+AL121898.1 20 9047481 9047555 - sense 0.0
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+PLCB4 20 9049410 9461889 + sense 0.0
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+RP5-1119D9.4 20 9485827 9495645 - sense 0.0
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+LAMP5 20 9495005 9511171 + sense 0.0
+LAMP5 20 9495005 9511171 + antisense 0.0
+PAK7 20 9518036 9819689 - sense 0.0
+PAK7 20 9518036 9819689 - antisense 0.0
+RP5-986I17.2 20 9556255 9558336 + sense 0.0
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+RP5-839B4.8 20 9966736 9987764 + sense 0.0
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+ANKEF1 20 9966774 10037410 + sense 0.0
+ANKEF1 20 9966774 10037410 + antisense 0.0
+SNAP25-AS1 20 10002620 10349424 - sense 0.0
+SNAP25-AS1 20 10002620 10349424 - antisense 0.0
+AL109754.1 20 10036968 10037063 + sense 0.0
+AL109754.1 20 10036968 10037063 + antisense 0.0
+RP11-416N4.4 20 10154168 10177638 + sense 0.0
+RP11-416N4.4 20 10154168 10177638 + antisense 0.0
+RP11-416N4.1 20 10160883 10166423 + sense 0.0
+RP11-416N4.1 20 10160883 10166423 + antisense 0.0
+SNAP25 20 10199478 10288066 + sense 0.0
+SNAP25 20 10199478 10288066 + antisense 0.0
+HIGD1AP15 20 10315067 10315346 + sense 0.0
+HIGD1AP15 20 10315067 10315346 + antisense 0.0
+RPL23AP6 20 10329805 10330276 - sense 0.0
+RPL23AP6 20 10329805 10330276 - antisense 0.0
+AL023913.1 20 10342736 10342878 - sense 0.0
+AL023913.1 20 10342736 10342878 - antisense 0.0
+SDAD1P2 20 10366427 10368454 + sense 0.0
+SDAD1P2 20 10366427 10368454 + antisense 0.0
+MKKS 20 10381657 10414870 - sense 0.0
+MKKS 20 10381657 10414870 - antisense 0.0
+SLX4IP 20 10415951 10617477 + sense 0.0
+SLX4IP 20 10415951 10617477 + antisense 0.0
+RP5-1099D15.1 20 10593509 10594877 - sense 0.0
+RP5-1099D15.1 20 10593509 10594877 - antisense 0.0
+JAG1 20 10618332 10654694 - sense 0.0
+JAG1 20 10618332 10654694 - antisense 0.0
+JAG1 20 10625847 10627014 - sense 0.0
+JAG1 20 10625847 10627014 - antisense 0.0
+RP11-103J8.1 20 10653576 10975572 + sense 0.0
+RP11-103J8.1 20 10653576 10975572 + antisense 0.0
+RP1-278O22.1 20 10733738 10734614 + sense 0.0
+RP1-278O22.1 20 10733738 10734614 + antisense 0.0
+RP1-278O22.2 20 10733926 10745934 - sense 0.0
+RP1-278O22.2 20 10733926 10745934 - antisense 0.0
+RP4-697P8.3 20 10855981 10889920 - sense 0.0
+RP4-697P8.3 20 10855981 10889920 - antisense 0.0
+FAT1P1 20 10869230 10869736 - sense 0.0
+FAT1P1 20 10869230 10869736 - antisense 0.0
+RP11-103J8.2 20 10981952 10982411 + sense 0.0
+RP11-103J8.2 20 10981952 10982411 + antisense 0.0
+C20orf187 20 11008408 11010014 + sense 0.0
+C20orf187 20 11008408 11010014 + antisense 0.0
+RP4-734C18.1 20 11214818 11282173 - sense 0.0
+RP4-734C18.1 20 11214818 11282173 - antisense 0.0
+RPS11P1 20 11326031 11326503 - sense 0.0
+RPS11P1 20 11326031 11326503 - antisense 0.0
+RP5-1128N12.2 20 11589084 11589696 - sense 0.0
+RP5-1128N12.2 20 11589084 11589696 - antisense 0.0
+PGAM3P 20 11601699 11602125 + sense 0.0
+PGAM3P 20 11601699 11602125 + antisense 0.0
+RP11-268G13.1 20 11665792 11667971 - sense 0.0
+RP11-268G13.1 20 11665792 11667971 - antisense 0.0
+LINC00687 20 11781111 11851363 - sense 0.0
+LINC00687 20 11781111 11851363 - antisense 0.0
+AL080274.1 20 11790813 11791095 - sense 0.0
+AL080274.1 20 11790813 11791095 - antisense 0.0
+RN7SKP111 20 11799469 11799739 - sense 0.0
+RN7SKP111 20 11799469 11799739 - antisense 0.0
+RP5-1012F16.2 20 11819003 11819222 + sense 0.0
+RP5-1012F16.2 20 11819003 11819222 + antisense 0.0
+BTBD3 20 11871371 11907257 + sense 0.0
+BTBD3 20 11871371 11907257 + antisense 0.0
+RP4-742J24.2 20 11890052 11899325 - sense 0.0
+RP4-742J24.2 20 11890052 11899325 - antisense 0.0
+RP4-796I8.1 20 12224543 12224944 - sense 0.0
+RP4-796I8.1 20 12224543 12224944 - antisense 0.0
+RP11-102J14.1 20 12286261 12297133 - sense 0.0
+RP11-102J14.1 20 12286261 12297133 - antisense 0.0
+PA2G4P2 20 12360704 12361903 + sense 0.0
+PA2G4P2 20 12360704 12361903 + antisense 0.0
+RP5-1069C8.2 20 12845850 12933167 - sense 0.0
+RP5-1069C8.2 20 12845850 12933167 - antisense 0.0
+RP5-1069C8.3 20 12915525 12916431 - sense 0.0
+RP5-1069C8.3 20 12915525 12916431 - antisense 0.0
+RP11-157E14.1 20 12930986 12932275 + sense 0.0
+RP11-157E14.1 20 12930986 12932275 + antisense 0.0
+SPTLC3 20 12989627 13147411 + sense 0.0
+SPTLC3 20 12989627 13147411 + antisense 0.0
+RP4-718P11.1 20 13054315 13054960 - sense 0.0
+RP4-718P11.1 20 13054315 13054960 - antisense 0.0
+ISM1 20 13202418 13281298 + sense 0.0
+ISM1 20 13202418 13281298 + antisense 0.0
+ISM1-AS1 20 13218448 13220321 - sense 0.0
+ISM1-AS1 20 13218448 13220321 - antisense 0.0
+RP5-1077I2.3 20 13224711 13226016 - sense 0.0
+RP5-1077I2.3 20 13224711 13226016 - antisense 0.0
+TASP1 20 13246709 13619587 - sense 0.0
+TASP1 20 13246709 13619587 - antisense 0.0
+GAPDHP2 20 13373324 13374321 + sense 0.0
+GAPDHP2 20 13373324 13374321 + antisense 0.0
+ESF1 20 13694969 13765532 - sense 0.0
+ESF1 20 13694969 13765532 - antisense 0.0
+NDUFAF5 20 13765596 13799067 + sense 0.0
+NDUFAF5 20 13765596 13799067 + antisense 0.0
+SEL1L2 20 13829893 13977089 - sense 0.0
+SEL1L2 20 13829893 13977089 - antisense 0.0
+AL117333.1 20 13936410 13936503 - sense 0.0
+AL117333.1 20 13936410 13936503 - antisense 0.0
+RNU6-278P 20 13953962 13954070 - sense 0.0
+RNU6-278P 20 13953962 13954070 - antisense 0.0
+MACROD2 20 13976015 16033842 + sense 0.0
+MACROD2 20 13976015 16033842 + antisense 0.0
+RPS3P1 20 13984154 13984345 + sense 0.0
+RPS3P1 20 13984154 13984345 + antisense 0.0
+AIMP1P1 20 14108046 14108982 + sense 0.0
+AIMP1P1 20 14108046 14108982 + antisense 0.0
+RN7SL864P 20 14203687 14203976 + sense 0.0
+RN7SL864P 20 14203687 14203976 + antisense 0.0
+FLRT3 20 14303634 14318262 - sense 0.0
+FLRT3 20 14303634 14318262 - antisense 0.0
+RNU6-228P 20 14332966 14333071 + sense 0.0
+RNU6-228P 20 14332966 14333071 + antisense 0.0
+RNF11B 20 14527830 14528269 - sense 0.0
+RNF11B 20 14527830 14528269 - antisense 0.0
+MACROD2-IT1 20 14535030 14617170 + sense 0.0
+MACROD2-IT1 20 14535030 14617170 + antisense 0.0
+RPS10P2 20 14738209 14738702 + sense 0.0
+RPS10P2 20 14738209 14738702 + antisense 0.0
+MACROD2-AS1 20 14864899 14910161 - sense 0.0
+MACROD2-AS1 20 14864899 14910161 - antisense 0.0
+RP5-974N19.1 20 14914489 14916009 - sense 0.0
+RP5-974N19.1 20 14914489 14916009 - antisense 0.0
+RNU6-1159P 20 15002199 15002305 - sense 0.0
+RNU6-1159P 20 15002199 15002305 - antisense 0.0
+RNU6-115P 20 15003498 15003604 + sense 0.0
+RNU6-115P 20 15003498 15003604 + antisense 0.0
+RNA5SP475 20 15261410 15261519 - sense 0.0
+RNA5SP475 20 15261410 15261519 - antisense 0.0
+RP11-388K2.1 20 15532802 15533530 - sense 0.0
+RP11-388K2.1 20 15532802 15533530 - antisense 0.0
+AL121584.1 20 15539025 15539113 - sense 0.0
+AL121584.1 20 15539025 15539113 - antisense 0.0
+ENSAP1 20 15600139 15600464 - sense 0.0
+ENSAP1 20 15600139 15600464 - antisense 0.0
+PPIAP17 20 16204395 16205180 - sense 0.0
+PPIAP17 20 16204395 16205180 - antisense 0.0
+KIF16B 20 16252749 16554078 - sense 0.0
+KIF16B 20 16252749 16554078 - antisense 0.0
+AL118509.1 20 16390942 16391036 - sense 0.0
+AL118509.1 20 16390942 16391036 - antisense 0.0
+RPLP0P1 20 16566978 16567338 - sense 0.0
+RPLP0P1 20 16566978 16567338 - antisense 0.0
+Y_RNA 20 16651286 16651387 - sense 0.0
+Y_RNA 20 16651286 16651387 - antisense 0.0
+RPL7AL3 20 16664753 16665049 - sense 0.0
+RPL7AL3 20 16664753 16665049 - antisense 0.0
+RP4-705D16.3 20 16695489 16711593 - sense 0.0
+RP4-705D16.3 20 16695489 16711593 - antisense 0.0
+SNRPB2 20 16710606 16722421 + sense 0.0
+SNRPB2 20 16710606 16722421 + antisense 0.0
+OTOR 20 16729003 16750707 + sense 0.0
+OTOR 20 16729003 16750707 + antisense 0.0
+RP5-1195D24.1 20 16838607 16844793 - sense 0.0
+RP5-1195D24.1 20 16838607 16844793 - antisense 0.0
+U3 20 16963477 16963678 - sense 0.0
+U3 20 16963477 16963678 - antisense 0.0
+RNU6-27P 20 17168155 17168261 + sense 0.0
+RNU6-27P 20 17168155 17168261 + antisense 0.0
+RP1-298M8.1 20 17168779 17168989 + sense 0.0
+RP1-298M8.1 20 17168779 17168989 + antisense 0.0
+RNU1-131P 20 17189705 17189865 + sense 0.0
+RNU1-131P 20 17189705 17189865 + antisense 0.0
+PCSK2 20 17206752 17465223 + sense 0.0
+PCSK2 20 17206752 17465223 + antisense 0.0
+DYNLT3P1 20 17459730 17460076 - sense 0.0
+DYNLT3P1 20 17459730 17460076 - antisense 0.0
+BFSP1 20 17474550 17549865 - sense 0.0
+BFSP1 20 17474550 17549865 - antisense 0.0
+RPS27AP2 20 17497488 17497952 + sense 0.0
+RPS27AP2 20 17497488 17497952 + antisense 0.0
+DSTN 20 17550508 17590564 + sense 0.0
+DSTN 20 17550508 17590564 + antisense 0.0
+RN7SKP69 20 17556851 17557155 - sense 0.0
+RN7SKP69 20 17556851 17557155 - antisense 0.0
+RP11-462D18.2 20 17579900 17580452 - sense 0.0
+RP11-462D18.2 20 17579900 17580452 - antisense 0.0
+RRBP1 20 17594323 17662940 - sense 0.0
+RRBP1 20 17594323 17662940 - antisense 0.0
+BANF2 20 17674317 17716516 + sense 0.0
+BANF2 20 17674317 17716516 + antisense 0.0
+AL035045.1 20 17823227 17823372 + sense 0.0
+AL035045.1 20 17823227 17823372 + antisense 0.0
+RP5-905G11.3 20 17868007 17868804 - sense 0.0
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+RNU6-192P 20 17884406 17884505 + sense 0.0
+RNU6-192P 20 17884406 17884505 + antisense 0.0
+SNX5 20 17922241 17949623 - sense 0.0
+SNX5 20 17922241 17949623 - antisense 0.0
+OVOL2 20 17937623 18039832 - sense 0.0
+OVOL2 20 17937623 18039832 - antisense 0.0
+SNORD17 20 17943353 17943589 - sense 0.0
+SNORD17 20 17943353 17943589 - antisense 0.0
+MGME1 20 17949556 17971765 + sense 0.0
+MGME1 20 17949556 17971765 + antisense 0.0
+PTMAP3 20 17992599 17992928 + sense 0.0
+PTMAP3 20 17992599 17992928 + antisense 0.0
+RP4-726N1.2 20 18040137 18051652 + sense 0.0
+RP4-726N1.2 20 18040137 18051652 + antisense 0.0
+RPL15P1 20 18070760 18071359 - sense 0.0
+RPL15P1 20 18070760 18071359 - antisense 0.0
+RNU7-137P 20 18076215 18076276 - sense 0.0
+RNU7-137P 20 18076215 18076276 - antisense 0.0
+Y_RNA 20 18094111 18094223 - sense 0.0
+Y_RNA 20 18094111 18094223 - antisense 0.0
+PET117 20 18118517 18123813 + sense 0.0
+PET117 20 18118517 18123813 + antisense 0.0
+CSRP2BP 20 18118762 18169031 + sense 0.0
+CSRP2BP 20 18118762 18169031 + antisense 0.0
+AL050321.1 20 18150549 18150633 - sense 0.0
+AL050321.1 20 18150549 18150633 - antisense 0.0
+RP4-717M23.2 20 18200757 18201156 + sense 0.0
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+RN7SL14P 20 18239200 18239495 - sense 0.0
+RN7SL14P 20 18239200 18239495 - antisense 0.0
+RNU2-56P 20 18246334 18246523 - sense 0.0
+RNU2-56P 20 18246334 18246523 - antisense 0.0
+ZNF133 20 18269121 18297640 + sense 0.0
+ZNF133 20 18269121 18297640 + antisense 0.0
+RN7SKP74 20 18275787 18276095 - sense 0.0
+RN7SKP74 20 18275787 18276095 - antisense 0.0
+RP4-568F9.3 20 18294409 18295755 - sense 0.0
+RP4-568F9.3 20 18294409 18295755 - antisense 0.0
+RP4-568F9.6 20 18303196 18339944 - sense 0.0
+RP4-568F9.6 20 18303196 18339944 - antisense 0.0
+RNY4P11 20 18309650 18309746 + sense 0.0
+RNY4P11 20 18309650 18309746 + antisense 0.0
+LINC00851 20 18359693 18362128 + sense 0.0
+LINC00851 20 18359693 18362128 + antisense 0.0
+DZANK1 20 18364011 18447925 - sense 0.0
+DZANK1 20 18364011 18447925 - antisense 0.0
+GCNT1P1 20 18400804 18402098 - sense 0.0
+GCNT1P1 20 18400804 18402098 - antisense 0.0
+RNA5SP476 20 18414486 18414588 + sense 0.0
+RNA5SP476 20 18414486 18414588 + antisense 0.0
+POLR3F 20 18447771 18465287 + sense 0.0
+POLR3F 20 18447771 18465287 + antisense 0.0
+MIR3192 20 18451259 18451335 + sense 0.0
+MIR3192 20 18451259 18451335 + antisense 0.0
+RPL21P3 20 18465909 18466696 + sense 0.0
+RPL21P3 20 18465909 18466696 + antisense 0.0
+RBBP9 20 18467184 18477887 - sense 0.0
+RBBP9 20 18467184 18477887 - antisense 0.0
+RPS19P1 20 18485277 18485710 + sense 0.0
+RPS19P1 20 18485277 18485710 + antisense 0.0
+SEC23B 20 18488137 18542059 + sense 0.0
+SEC23B 20 18488137 18542059 + antisense 0.0
+AL121893.1 20 18526352 18526428 - sense 0.0
+AL121893.1 20 18526352 18526428 - antisense 0.0
+LINC00493 20 18548064 18550207 + sense 0.0
+LINC00493 20 18548064 18550207 + antisense 0.0
+DTD1 20 18568537 18744561 + sense 0.0
+DTD1 20 18568537 18744561 + antisense 0.0
+RN7SL638P 20 18572974 18573261 + sense 0.0
+RN7SL638P 20 18572974 18573261 + antisense 0.0
+RNU6ATAC34P 20 18591691 18591811 - sense 0.0
+RNU6ATAC34P 20 18591691 18591811 - antisense 0.0
+DUXAP7 20 18623426 18624278 - sense 0.0
+DUXAP7 20 18623426 18624278 - antisense 0.0
+RP11-379J5.5 20 18655039 18679353 - sense 0.0
+RP11-379J5.5 20 18655039 18679353 - antisense 0.0
+EEF1A1P34 20 18763068 18764334 - sense 0.0
+EEF1A1P34 20 18763068 18764334 - antisense 0.0
+LINC00652 20 18768295 18774979 - sense 0.0
+LINC00652 20 18768295 18774979 - antisense 0.0
+RP5-1068E13.7 20 18775173 18776711 + sense 0.0
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+C20orf78 20 18790372 18810797 - sense 0.0
+C20orf78 20 18790372 18810797 - antisense 0.0
+SCP2D1 20 18794370 18795033 + sense 0.0
+SCP2D1 20 18794370 18795033 + antisense 0.0
+AL136090.1 20 19106429 19106551 + sense 0.0
+AL136090.1 20 19106429 19106551 + antisense 0.0
+SLC24A3 20 19193290 19703581 + sense 0.0
+SLC24A3 20 19193290 19703581 + antisense 0.0
+RP11-97N19.2 20 19193496 19194121 - sense 0.0
+RP11-97N19.2 20 19193496 19194121 - antisense 0.0
+RP5-1027G4.3 20 19222946 19265240 - sense 0.0
+RP5-1027G4.3 20 19222946 19265240 - antisense 0.0
+AL049647.1 20 19321940 19322016 + sense 0.0
+AL049647.1 20 19321940 19322016 + antisense 0.0
+AL139429.1 20 19570741 19570831 - sense 0.0
+AL139429.1 20 19570741 19570831 - antisense 0.0
+RP4-718D20.3 20 19673853 19678220 - sense 0.0
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+AL121761.1 20 19715460 19715553 - sense 0.0
+AL121761.1 20 19715460 19715553 - antisense 0.0
+AL121761.2 20 19738296 19738679 - sense 0.0
+AL121761.2 20 19738296 19738679 - antisense 0.0
+RP1-122P22.2 20 19738352 19790319 + sense 0.0
+RP1-122P22.2 20 19738352 19790319 + antisense 0.0
+RPL12L3 20 19804087 19804587 - sense 0.0
+RPL12L3 20 19804087 19804587 - antisense 0.0
+RIN2 20 19867165 19983101 + sense 0.0
+RIN2 20 19867165 19983101 + antisense 0.0
+NAA20 20 19997760 20014299 + sense 0.0
+NAA20 20 19997760 20014299 + antisense 0.0
+CRNKL1 20 20015012 20036690 - sense 0.0
+CRNKL1 20 20015012 20036690 - antisense 0.0
+C20orf26 20 20033158 20341346 + sense 0.0
+C20orf26 20 20033158 20341346 + antisense 0.0
+RP5-1002M8.4 20 20075045 20076328 - sense 0.0
+RP5-1002M8.4 20 20075045 20076328 - antisense 0.0
+RP5-1178H5.2 20 20194943 20195906 - sense 0.0
+RP5-1178H5.2 20 20194943 20195906 - antisense 0.0
+RPL17P1 20 20233947 20234482 - sense 0.0
+RPL17P1 20 20233947 20234482 - antisense 0.0
+RP5-1096J16.1 20 20239051 20248453 - sense 0.0
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+RN7SL690P 20 20297428 20297684 - sense 0.0
+RN7SL690P 20 20297428 20297684 - antisense 0.0
+INSM1 20 20348765 20351590 + sense 0.0
+INSM1 20 20348765 20351590 + antisense 0.0
+RALGAPA2 20 20370196 20693131 - sense 0.0
+RALGAPA2 20 20370196 20693131 - antisense 0.0
+EIF4E2P1 20 20640354 20640608 + sense 0.0
+EIF4E2P1 20 20640354 20640608 + antisense 0.0
+RP11-23O13.1 20 20701830 20702522 + sense 0.0
+RP11-23O13.1 20 20701830 20702522 + antisense 0.0
+RN7SL607P 20 20719078 20719374 - sense 0.0
+RN7SL607P 20 20719078 20719374 - antisense 0.0
+MRPS11P1 20 20834764 20835285 - sense 0.0
+MRPS11P1 20 20834764 20835285 - antisense 0.0
+RP5-1177M21.1 20 20951089 20953203 + sense 0.0
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+LINC00237 20 21068245 21086999 - sense 0.0
+LINC00237 20 21068245 21086999 - antisense 0.0
+RPL24P2 20 21095364 21095838 + sense 0.0
+RPL24P2 20 21095364 21095838 + antisense 0.0
+PLK1S1 20 21106624 21227260 + sense 0.0
+PLK1S1 20 21106624 21227260 + antisense 0.0
+RNA5SP477 20 21119597 21119715 - sense 0.0
+RNA5SP477 20 21119597 21119715 - antisense 0.0
+RP5-872K7.7 20 21129382 21143531 - sense 0.0
+RP5-872K7.7 20 21129382 21143531 - antisense 0.0
+RP4-777D9.2 20 21134664 21198927 - sense 0.0
+RP4-777D9.2 20 21134664 21198927 - antisense 0.0
+RPS15AP1 20 21146846 21147236 - sense 0.0
+RPS15AP1 20 21146846 21147236 - antisense 0.0
+ZNF877P 20 21246492 21247103 + sense 0.0
+ZNF877P 20 21246492 21247103 + antisense 0.0
+XRN2 20 21283942 21370463 + sense 0.0
+XRN2 20 21283942 21370463 + antisense 0.0
+NKX2-4 20 21376005 21378666 - sense 0.0
+NKX2-4 20 21376005 21378666 - antisense 0.0
+RP11-227D2.3 20 21378456 21381029 + sense 0.0
+RP11-227D2.3 20 21378456 21381029 + antisense 0.0
+RN7SKP140 20 21405396 21405679 - sense 0.0
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+RP5-984P4.1 20 21468882 21469263 - sense 0.0
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+GSTM3P1 20 21482033 21482606 + sense 0.0
+GSTM3P1 20 21482033 21482606 + antisense 0.0
+NKX2-2 20 21491648 21494664 - sense 0.0
+NKX2-2 20 21491648 21494664 - antisense 0.0
+NKX2-2-AS1 20 21492085 21492947 + sense 0.0
+NKX2-2-AS1 20 21492085 21492947 + antisense 0.0
+RP5-984P4.4 20 21510840 21511382 + sense 0.0
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+PAX1 20 21686297 21696620 + sense 0.0
+PAX1 20 21686297 21696620 + antisense 0.0
+SLC25A6P1 20 21722941 21723715 - sense 0.0
+SLC25A6P1 20 21722941 21723715 - antisense 0.0
+RPL41P1 20 21735866 21736171 + sense 0.0
+RPL41P1 20 21735866 21736171 + antisense 0.0
+RP5-1185K9.1 20 21928285 21951421 + sense 0.0
+RP5-1185K9.1 20 21928285 21951421 + antisense 0.0
+RP11-125P18.1 20 22034831 22055238 + sense 0.0
+RP11-125P18.1 20 22034831 22055238 + antisense 0.0
+RP5-1097P24.1 20 22201192 22203921 + sense 0.0
+RP5-1097P24.1 20 22201192 22203921 + antisense 0.0
+RP5-828K20.1 20 22252690 22254092 - sense 0.0
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+RP5-828K20.2 20 22260866 22263310 - sense 0.0
+RP5-828K20.2 20 22260866 22263310 - antisense 0.0
+RP5-1004I9.2 20 22324331 22324568 - sense 0.0
+RP5-1004I9.2 20 22324331 22324568 - antisense 0.0
+RP5-1004I9.1 20 22380989 22401281 - sense 0.0
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+LINC00261 20 22528309 22559280 - sense 0.0
+LINC00261 20 22528309 22559280 - antisense 0.0
+FOXA2 20 22561643 22566093 - sense 0.0
+FOXA2 20 22561643 22566093 - antisense 0.0
+RP4-788L20.3 20 22568160 22588155 - sense 0.0
+RP4-788L20.3 20 22568160 22588155 - antisense 0.0
+RP11-359G22.2 20 22656710 22665982 - sense 0.0
+RP11-359G22.2 20 22656710 22665982 - antisense 0.0
+KRT18P3 20 22713440 22714727 - sense 0.0
+KRT18P3 20 22713440 22714727 - antisense 0.0
+AL158175.1 20 22713848 22713939 - sense 0.0
+AL158175.1 20 22713848 22713939 - antisense 0.0
+CYB5P4 20 22866308 22866706 - sense 0.0
+CYB5P4 20 22866308 22866706 - antisense 0.0
+RP11-189G24.2 20 22941171 22946700 - sense 0.0
+RP11-189G24.2 20 22941171 22946700 - antisense 0.0
+RP4-753D10.5 20 22990846 23011422 - sense 0.0
+RP4-753D10.5 20 22990846 23011422 - antisense 0.0
+RP4-753D10.3 20 23012179 23019873 + sense 0.0
+RP4-753D10.3 20 23012179 23019873 + antisense 0.0
+SSTR4 20 23016057 23017314 + sense 0.0
+SSTR4 20 23016057 23017314 + antisense 0.0
+THBD 20 23026270 23030378 - sense 0.0
+THBD 20 23026270 23030378 - antisense 0.0
+CD93 20 23059986 23066977 - sense 0.0
+CD93 20 23059986 23066977 - antisense 0.0
+AL118508.1 20 23061083 23061278 - sense 0.0
+AL118508.1 20 23061083 23061278 - antisense 0.0
+LINC00656 20 23105705 23113258 - sense 0.0
+LINC00656 20 23105705 23113258 - antisense 0.0
+RNA5SP478 20 23141494 23141608 - sense 0.0
+RNA5SP478 20 23141494 23141608 - antisense 0.0
+RP4-737E23.2 20 23168765 23170944 + sense 0.0
+RP4-737E23.2 20 23168765 23170944 + antisense 0.0
+RP3-322G13.7 20 23327578 23332123 - sense 0.0
+RP3-322G13.7 20 23327578 23332123 - antisense 0.0
+AL096677.1 20 23330015 23334066 - sense 0.0
+AL096677.1 20 23330015 23334066 - antisense 0.0
+NXT1 20 23331373 23335414 + sense 0.0
+NXT1 20 23331373 23335414 + antisense 0.0
+RP3-322G13.5 20 23337231 23338753 - sense 0.0
+RP3-322G13.5 20 23337231 23338753 - antisense 0.0
+GZF1 20 23342787 23353700 + sense 0.0
+GZF1 20 23342787 23353700 + antisense 0.0
+NAPB 20 23355159 23402125 - sense 0.0
+NAPB 20 23355159 23402125 - antisense 0.0
+RNA5SP479 20 23361533 23361649 - sense 0.0
+RNA5SP479 20 23361533 23361649 - antisense 0.0
+CSTL1 20 23420322 23425567 + sense 0.0
+CSTL1 20 23420322 23425567 + antisense 0.0
+CST11 20 23431040 23433494 - sense 0.0
+CST11 20 23431040 23433494 - antisense 0.0
+Y_RNA 20 23438221 23438322 - sense 0.0
+Y_RNA 20 23438221 23438322 - antisense 0.0
+CST12P 20 23456337 23460435 + sense 0.0
+CST12P 20 23456337 23460435 + antisense 0.0
+CST8 20 23471738 23476655 + sense 0.0
+CST8 20 23471738 23476655 + antisense 0.0
+RP3-333B15.4 20 23497521 23498706 - sense 0.0
+RP3-333B15.4 20 23497521 23498706 - antisense 0.0
+CST13P 20 23499783 23522655 + sense 0.0
+CST13P 20 23499783 23522655 + antisense 0.0
+CST9LP1 20 23528401 23531289 - sense 0.0
+CST9LP1 20 23528401 23531289 - antisense 0.0
+CST9L 20 23545369 23549386 - sense 0.0
+CST9L 20 23545369 23549386 - antisense 0.0
+RP11-218C14.2 20 23564282 23567147 + sense 0.0
+RP11-218C14.2 20 23564282 23567147 + antisense 0.0
+CST9 20 23583047 23586513 - sense 0.0
+CST9 20 23583047 23586513 - antisense 0.0
+CST3 20 23608534 23619110 - sense 0.0
+CST3 20 23608534 23619110 - antisense 0.0
+RP11-218C14.8 20 23612463 23612953 - sense 0.0
+RP11-218C14.8 20 23612463 23612953 - antisense 0.0
+RP11-218C14.5 20 23635862 23637027 - sense 0.0
+RP11-218C14.5 20 23635862 23637027 - antisense 0.0
+CST4 20 23666277 23669677 - sense 0.0
+CST4 20 23666277 23669677 - antisense 0.0
+CST2P1 20 23691957 23692043 - sense 0.0
+CST2P1 20 23691957 23692043 - antisense 0.0
+CST1 20 23728190 23731905 - sense 0.0
+CST1 20 23728190 23731905 - antisense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + sense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + antisense 0.0
+CST2 20 23804406 23807368 - sense 0.0
+CST2 20 23804406 23807368 - antisense 0.0
+CST5 20 23856572 23860387 - sense 0.0
+CST5 20 23856572 23860387 - antisense 0.0
+CSTP1 20 23899408 23902806 - sense 0.0
+CSTP1 20 23899408 23902806 - antisense 0.0
+RP5-831C21.1 20 23961222 23961371 - sense 0.0
+RP5-831C21.1 20 23961222 23961371 - antisense 0.0
+GGTLC1 20 23965690 23969416 - sense 0.0
+GGTLC1 20 23965690 23969416 - antisense 0.0
+POM121L3P 20 23969929 23971091 + sense 0.0
+POM121L3P 20 23969929 23971091 + antisense 0.0
+RP5-1100I6.1 20 24123226 24125022 - sense 0.0
+RP5-1100I6.1 20 24123226 24125022 - antisense 0.0
+RP5-1100I6.2 20 24180403 24205224 + sense 0.0
+RP5-1100I6.2 20 24180403 24205224 + antisense 0.0
+RNU1-23P 20 24217891 24218034 + sense 0.0
+RNU1-23P 20 24217891 24218034 + antisense 0.0
+RP4-564O4.1 20 24278221 24298722 - sense 0.0
+RP4-564O4.1 20 24278221 24298722 - antisense 0.0
+GAPDHP53 20 24426027 24426950 + sense 0.0
+GAPDHP53 20 24426027 24426950 + antisense 0.0
+SYNDIG1 20 24449835 24647252 + sense 0.0
+SYNDIG1 20 24449835 24647252 + antisense 0.0
+RP11-526K17.2 20 24472108 24482981 - sense 0.0
+RP11-526K17.2 20 24472108 24482981 - antisense 0.0
+RP5-860P4.2 20 24660183 24661627 + sense 0.0
+RP5-860P4.2 20 24660183 24661627 + antisense 0.0
+CST7 20 24929866 24940564 + sense 0.0
+CST7 20 24929866 24940564 + antisense 0.0
+APMAP 20 24943561 24973615 - sense 0.0
+APMAP 20 24943561 24973615 - antisense 0.0
+RNU6-1257P 20 24954807 24954916 + sense 0.0
+RNU6-1257P 20 24954807 24954916 + antisense 0.0
+ACSS1 20 24986868 25039616 - sense 0.0
+ACSS1 20 24986868 25039616 - antisense 0.0
+VSX1 20 25051521 25062996 - sense 0.0
+VSX1 20 25051521 25062996 - antisense 0.0
+RP5-1025A1.2 20 25079741 25080564 + sense 0.0
+RP5-1025A1.2 20 25079741 25080564 + antisense 0.0
+RP4-738P15.1 20 25121425 25129894 - sense 0.0
+RP4-738P15.1 20 25121425 25129894 - antisense 0.0
+RP4-738P15.4 20 25141803 25142697 - sense 0.0
+RP4-738P15.4 20 25141803 25142697 - antisense 0.0
+ENTPD6 20 25176329 25207365 + sense 0.0
+ENTPD6 20 25176329 25207365 + antisense 0.0
+Y_RNA 20 25195334 25195434 + sense 0.0
+Y_RNA 20 25195334 25195434 + antisense 0.0
+AL035252.1 20 25207122 25207370 - sense 0.0
+AL035252.1 20 25207122 25207370 - antisense 0.0
+PYGB 20 25228705 25278650 + sense 0.0
+PYGB 20 25228705 25278650 + antisense 0.0
+ABHD12 20 25275379 25371619 - sense 0.0
+ABHD12 20 25275379 25371619 - antisense 0.0
+PPIAP2 20 25348911 25349402 - sense 0.0
+PPIAP2 20 25348911 25349402 - antisense 0.0
+GINS1 20 25388363 25433264 + sense 0.0
+GINS1 20 25388363 25433264 + antisense 0.0
+NINL 20 25433341 25566153 - sense 0.0
+NINL 20 25433341 25566153 - antisense 0.0
+RNU6ATAC17P 20 25591789 25591859 + sense 0.0
+RNU6ATAC17P 20 25591789 25591859 + antisense 0.0
+NANP 20 25593571 25604811 - sense 0.0
+NANP 20 25593571 25604811 - antisense 0.0
+ZNF337-AS1 20 25604681 25658710 + sense 0.0
+ZNF337-AS1 20 25604681 25658710 + antisense 0.0
+RN7SL594P 20 25635232 25635517 - sense 0.0
+RN7SL594P 20 25635232 25635517 - antisense 0.0
+MED28P7 20 25650493 25651022 - sense 0.0
+MED28P7 20 25650493 25651022 - antisense 0.0
+ZNF337 20 25654851 25677477 - sense 0.0
+ZNF337 20 25654851 25677477 - antisense 0.0
+VN1R108P 20 25714900 25715729 + sense 0.0
+VN1R108P 20 25714900 25715729 + antisense 0.0
+RP13-401N8.1 20 25731854 25733397 + sense 0.0
+RP13-401N8.1 20 25731854 25733397 + antisense 0.0
+FAM182B 20 25744102 25848861 - sense 0.0
+FAM182B 20 25744102 25848861 - antisense 0.0
+RP13-401N8.3 20 25816621 25817468 - sense 0.0
+RP13-401N8.3 20 25816621 25817468 - antisense 0.0
+CFTRP1 20 25900135 25900317 - sense 0.0
+CFTRP1 20 25900135 25900317 - antisense 0.0
+RP4-760C5.5 20 25936448 25949924 + sense 0.0
+RP4-760C5.5 20 25936448 25949924 + antisense 0.0
+RP4-760C5.3 20 25989427 25991167 - sense 0.0
+RP4-760C5.3 20 25989427 25991167 - antisense 0.0
+CTD-2514C3.1 20 25999468 26001320 + sense 0.0
+CTD-2514C3.1 20 25999468 26001320 + antisense 0.0
+FAM182A 20 26035291 26073683 + sense 0.0
+FAM182A 20 26035291 26073683 + antisense 0.0
+NCOR1P1 20 26084052 26094664 - sense 0.0
+NCOR1P1 20 26084052 26094664 - antisense 0.0
+RP13-329D4.3 20 26113523 26114834 - sense 0.0
+RP13-329D4.3 20 26113523 26114834 - antisense 0.0
+MIR663A 20 26167556 26232162 - sense 0.0
+MIR663A 20 26167556 26232162 - antisense 0.0
+RP3-410C9.2 20 26171625 26174582 + sense 0.0
+RP3-410C9.2 20 26171625 26174582 + antisense 0.0
+RP4-610C12.2 20 29449474 29449652 - sense 0.0
+RP4-610C12.2 20 29449474 29449652 - antisense 0.0
+RP4-610C12.4 20 29513582 29521213 - sense 0.0
+RP4-610C12.4 20 29513582 29521213 - antisense 0.0
+RP4-610C12.3 20 29521637 29522987 - sense 0.0
+RP4-610C12.3 20 29521637 29522987 - antisense 0.0
+Y_RNA 20 29543691 29543802 - sense 0.0
+Y_RNA 20 29543691 29543802 - antisense 0.0
+RP4-610C12.1 20 29558488 29596406 - sense 0.0
+RP4-610C12.1 20 29558488 29596406 - antisense 0.0
+FRG1B 20 29611857 29634010 + sense 0.0
+FRG1B 20 29611857 29634010 + antisense 0.0
+AL441988.1 20 29637162 29637300 + sense 0.0
+AL441988.1 20 29637162 29637300 + antisense 0.0
+MLLT10P1 20 29637799 29638060 - sense 0.0
+MLLT10P1 20 29637799 29638060 - antisense 0.0
+DEFB115 20 29845467 29847435 + sense 0.0
+DEFB115 20 29845467 29847435 + antisense 0.0
+DKKL1P1 20 29861973 29862670 + sense 0.0
+DKKL1P1 20 29861973 29862670 + antisense 0.0
+RP5-854E16.2 20 29873120 29874638 - sense 0.0
+RP5-854E16.2 20 29873120 29874638 - antisense 0.0
+DEFB116 20 29891015 29896388 - sense 0.0
+DEFB116 20 29891015 29896388 - antisense 0.0
+RPL31P3 20 29899106 29899765 - sense 0.0
+RPL31P3 20 29899106 29899765 - antisense 0.0
+HAUS6P2 20 29929174 29932274 - sense 0.0
+HAUS6P2 20 29929174 29932274 - antisense 0.0
+RNA5SP480 20 29944673 29944781 + sense 0.0
+RNA5SP480 20 29944673 29944781 + antisense 0.0
+DEFB117 20 29948578 29948733 + sense 0.0
+DEFB117 20 29948578 29948733 + antisense 0.0
+DEFB118 20 29956421 29961726 + sense 0.0
+DEFB118 20 29956421 29961726 + antisense 0.0
+SNORA40 20 29964122 29964249 + sense 0.0
+SNORA40 20 29964122 29964249 + antisense 0.0
+DEFB119 20 29964967 29978406 - sense 0.0
+DEFB119 20 29964967 29978406 - antisense 0.0
+DEFB121 20 29992648 30000641 - sense 0.0
+DEFB121 20 29992648 30000641 - antisense 0.0
+DEFB122 20 30009239 30016983 - sense 0.0
+DEFB122 20 30009239 30016983 - antisense 0.0
+DEFB123 20 30028322 30038060 + sense 0.0
+DEFB123 20 30028322 30038060 + antisense 0.0
+DEFB124 20 30053309 30064560 - sense 0.0
+DEFB124 20 30053309 30064560 - antisense 0.0
+REM1 20 30063096 30072708 + sense 0.0
+REM1 20 30063096 30072708 + antisense 0.0
+LINC00028 20 30073581 30075377 + sense 0.0
+LINC00028 20 30073581 30075377 + antisense 0.0
+HM13 20 30102231 30157370 + sense 0.0
+HM13 20 30102231 30157370 + antisense 0.0
+RP3-324O17.4 20 30135307 30135852 + sense 0.0
+RP3-324O17.4 20 30135307 30135852 + antisense 0.0
+HM13-IT1 20 30150969 30151879 + sense 0.0
+HM13-IT1 20 30150969 30151879 + antisense 0.0
+HM13-AS1 20 30155510 30161066 - sense 0.0
+HM13-AS1 20 30155510 30161066 - antisense 0.0
+RNU6-384P 20 30168892 30168995 + sense 0.0
+RNU6-384P 20 30168892 30168995 + antisense 0.0
+ID1 20 30193086 30194318 + sense 0.0
+ID1 20 30193086 30194318 + antisense 0.0
+MIR3193 20 30194989 30195043 + sense 0.0
+MIR3193 20 30194989 30195043 + antisense 0.0
+COX4I2 20 30225691 30232809 + sense 0.0
+COX4I2 20 30225691 30232809 + antisense 0.0
+BCL2L1 20 30252255 30311792 - sense 0.0
+BCL2L1 20 30252255 30311792 - antisense 0.0
+RP11-243J16.7 20 30274019 30304628 + sense 0.0
+RP11-243J16.7 20 30274019 30304628 + antisense 0.0
+AL160175.1 20 30309001 30309134 + sense 0.0
+AL160175.1 20 30309001 30309134 + antisense 0.0
+TPX2 20 30327074 30389608 + sense 0.0
+TPX2 20 30327074 30389608 + antisense 0.0
+RP11-243J16.8 20 30396306 30396552 - sense 0.0
+RP11-243J16.8 20 30396306 30396552 - antisense 0.0
+MYLK2 20 30407111 30422492 + sense 0.0
+MYLK2 20 30407111 30422492 + antisense 0.0
+FOXS1 20 30432103 30433420 - sense 0.0
+FOXS1 20 30432103 30433420 - antisense 0.0
+DUSP15 20 30435440 30458550 - sense 0.0
+DUSP15 20 30435440 30458550 - antisense 0.0
+TTLL9 20 30458505 30532764 + sense 0.0
+TTLL9 20 30458505 30532764 + antisense 0.0
+RNU1-94P 20 30489057 30489229 + sense 0.0
+RNU1-94P 20 30489057 30489229 + antisense 0.0
+PDRG1 20 30532758 30539895 - sense 0.0
+PDRG1 20 30532758 30539895 - antisense 0.0
+XKR7 20 30555805 30591190 + sense 0.0
+XKR7 20 30555805 30591190 + antisense 0.0
+RNA5SP481 20 30596154 30596275 + sense 0.0
+RNA5SP481 20 30596154 30596275 + antisense 0.0
+CCM2L 20 30598245 30619984 + sense 0.0
+CCM2L 20 30598245 30619984 + antisense 0.0
+RP1-310O13.7 20 30615556 30619378 - sense 0.0
+RP1-310O13.7 20 30615556 30619378 - antisense 0.0
+RNA5SP482 20 30638391 30638508 + sense 0.0
+RNA5SP482 20 30638391 30638508 + antisense 0.0
+HCK 20 30639991 30689659 + sense 0.0
+HCK 20 30639991 30689659 + antisense 0.0
+TM9SF4 20 30697309 30755061 + sense 0.0
+TM9SF4 20 30697309 30755061 + antisense 0.0
+AL049539.1 20 30706457 30706554 - sense 0.0
+AL049539.1 20 30706457 30706554 - antisense 0.0
+RSL24D1P6 20 30758193 30758593 - sense 0.0
+RSL24D1P6 20 30758193 30758593 - antisense 0.0
+TSPY26P 20 30774280 30778330 - sense 0.0
+TSPY26P 20 30774280 30778330 - antisense 0.0
+PLAGL2 20 30780306 30795594 - sense 0.0
+PLAGL2 20 30780306 30795594 - antisense 0.0
+POFUT1 20 30795683 30826470 + sense 0.0
+POFUT1 20 30795683 30826470 + antisense 0.0
+MIR1825 20 30825598 30825650 + sense 0.0
+MIR1825 20 30825598 30825650 + antisense 0.0
+KIF3B 20 30865467 30922814 + sense 0.0
+KIF3B 20 30865467 30922814 + antisense 0.0
+AL121897.1 20 30865503 30865591 - sense 0.0
+AL121897.1 20 30865503 30865591 - antisense 0.0
+ASXL1 20 30946155 31027122 + sense 0.0
+ASXL1 20 30946155 31027122 + antisense 0.0
+C20orf112 20 31030862 31172876 - sense 0.0
+C20orf112 20 31030862 31172876 - antisense 0.0
+RP5-1184F4.5 20 31037558 31041410 + sense 0.0
+RP5-1184F4.5 20 31037558 31041410 + antisense 0.0
+RP11-410N8.3 20 31148895 31161690 + sense 0.0
+RP11-410N8.3 20 31148895 31161690 + antisense 0.0
+RP11-410N8.1 20 31169765 31181702 + sense 0.0
+RP11-410N8.1 20 31169765 31181702 + antisense 0.0
+RP11-410N8.4 20 31175281 31196695 + sense 0.0
+RP11-410N8.4 20 31175281 31196695 + antisense 0.0
+C20orf203 20 31219428 31261743 - sense 0.0
+C20orf203 20 31219428 31261743 - antisense 0.0
+BAK1P1 20 31276723 31278816 - sense 0.0
+BAK1P1 20 31276723 31278816 - antisense 0.0
+COMMD7 20 31290493 31331803 - sense 0.0
+COMMD7 20 31290493 31331803 - antisense 0.0
+DNMT3B 20 31350191 31397162 + sense 0.0
+DNMT3B 20 31350191 31397162 + antisense 0.0
+MAPRE1 20 31407699 31438211 + sense 0.0
+MAPRE1 20 31407699 31438211 + antisense 0.0
+RP5-1085F17.4 20 31430934 31442063 - sense 0.0
+RP5-1085F17.4 20 31430934 31442063 - antisense 0.0
+RP5-1085F17.3 20 31444848 31446557 + sense 0.0
+RP5-1085F17.3 20 31444848 31446557 + antisense 0.0
+EFCAB8 20 31446729 31549006 + sense 0.0
+EFCAB8 20 31446729 31549006 + antisense 0.0
+SUN5 20 31571579 31592239 - sense 0.0
+SUN5 20 31571579 31592239 - antisense 0.0
+BPIFB2 20 31595406 31611515 + sense 0.0
+BPIFB2 20 31595406 31611515 + antisense 0.0
+BPIFB6 20 31619454 31631853 + sense 0.0
+BPIFB6 20 31619454 31631853 + antisense 0.0
+HDHD1P3 20 31635323 31635958 - sense 0.0
+HDHD1P3 20 31635323 31635958 - antisense 0.0
+BPIFB3 20 31643230 31661434 + sense 0.0
+BPIFB3 20 31643230 31661434 + antisense 0.0
+AL121756.1 20 31645394 31645476 - sense 0.0
+AL121756.1 20 31645394 31645476 - antisense 0.0
+BPIFB4 20 31667450 31699557 + sense 0.0
+BPIFB4 20 31667450 31699557 + antisense 0.0
+BPIFA2 20 31749574 31769218 + sense 0.0
+BPIFA2 20 31749574 31769218 + antisense 0.0
+SOCS2P1 20 31775197 31776098 + sense 0.0
+SOCS2P1 20 31775197 31776098 + antisense 0.0
+BPIFA4P 20 31781391 31798268 + sense 0.0
+BPIFA4P 20 31781391 31798268 + antisense 0.0
+RP11-49G10.3 20 31802726 31804873 - sense 0.0
+RP11-49G10.3 20 31802726 31804873 - antisense 0.0
+BPIFA3 20 31805116 31815564 + sense 0.0
+BPIFA3 20 31805116 31815564 + antisense 0.0
+AL121901.1 20 31823091 31823387 + sense 0.0
+AL121901.1 20 31823091 31823387 + antisense 0.0
+BPIFA1 20 31823801 31831115 + sense 0.0
+BPIFA1 20 31823801 31831115 + antisense 0.0
+RPL12P3 20 31860068 31860463 - sense 0.0
+RPL12P3 20 31860068 31860463 - antisense 0.0
+BPIFB1 20 31861286 31897684 + sense 0.0
+BPIFB1 20 31861286 31897684 + antisense 0.0
+BPIFB5P 20 31904675 31917775 + sense 0.0
+BPIFB5P 20 31904675 31917775 + antisense 0.0
+BPIFB9P 20 31935526 31942250 + sense 0.0
+BPIFB9P 20 31935526 31942250 + antisense 0.0
+CDK5RAP1 20 31946645 31989367 - sense 0.0
+CDK5RAP1 20 31946645 31989367 - antisense 0.0
+SNTA1 20 31995761 32031698 - sense 0.0
+SNTA1 20 31995761 32031698 - antisense 0.0
+RN7SL511P 20 32046605 32046854 - sense 0.0
+RN7SL511P 20 32046605 32046854 - antisense 0.0
+CBFA2T2 20 32077881 32237842 + sense 0.0
+CBFA2T2 20 32077881 32237842 + antisense 0.0
+RP1-63M2.6 20 32244893 32245415 + sense 0.0
+RP1-63M2.6 20 32244893 32245415 + antisense 0.0
+NECAB3 20 32244893 32262269 - sense 0.0
+NECAB3 20 32244893 32262269 - antisense 0.0
+C20orf144 20 32250090 32253425 + sense 0.0
+C20orf144 20 32250090 32253425 + antisense 0.0
+ACTL10 20 32254304 32256331 + sense 0.0
+ACTL10 20 32254304 32256331 + antisense 0.0
+RP1-63M2.5 20 32262323 32263186 + sense 0.0
+RP1-63M2.5 20 32262323 32263186 + antisense 0.0
+E2F1 20 32263489 32274210 - sense 0.0
+E2F1 20 32263489 32274210 - antisense 0.0
+PXMP4 20 32294512 32308125 - sense 0.0
+PXMP4 20 32294512 32308125 - antisense 0.0
+RP4-553F4.2 20 32316737 32319634 - sense 0.0
+RP4-553F4.2 20 32316737 32319634 - antisense 0.0
+ZNF341 20 32319463 32380075 + sense 0.0
+ZNF341 20 32319463 32380075 + antisense 0.0
+RPL31P2 20 32339973 32340349 - sense 0.0
+RPL31P2 20 32339973 32340349 - antisense 0.0
+RP4-553F4.6 20 32375179 32398903 - sense 0.0
+RP4-553F4.6 20 32375179 32398903 - antisense 0.0
+CHMP4B 20 32399110 32442172 + sense 0.0
+CHMP4B 20 32399110 32442172 + antisense 0.0
+TPM3P2 20 32500129 32501142 - sense 0.0
+TPM3P2 20 32500129 32501142 - antisense 0.0
+PIGPP3 20 32552968 32553382 + sense 0.0
+PIGPP3 20 32552968 32553382 + antisense 0.0
+RP5-1125A11.1 20 32570858 32582163 - sense 0.0
+RP5-1125A11.1 20 32570858 32582163 - antisense 0.0
+RALY 20 32581452 32696114 + sense 0.0
+RALY 20 32581452 32696114 + antisense 0.0
+RP5-1125A11.4 20 32602775 32605555 - sense 0.0
+RP5-1125A11.4 20 32602775 32605555 - antisense 0.0
+MIR4755 20 32636925 32636996 + sense 0.0
+MIR4755 20 32636925 32636996 + antisense 0.0
+RP1-64K7.4 20 32668955 32669754 + sense 0.0
+RP1-64K7.4 20 32668955 32669754 + antisense 0.0
+EIF2S2 20 32676104 32700138 - sense 0.0
+EIF2S2 20 32676104 32700138 - antisense 0.0
+RPS2P1 20 32710276 32711096 + sense 0.0
+RPS2P1 20 32710276 32711096 + antisense 0.0
+ASIP 20 32782375 32857150 + sense 0.0
+ASIP 20 32782375 32857150 + antisense 0.0
+XPOTP1 20 32801301 32803698 - sense 0.0
+XPOTP1 20 32801301 32803698 - antisense 0.0
+RP4-785G19.5 20 32822646 32868979 - sense 0.0
+RP4-785G19.5 20 32822646 32868979 - antisense 0.0
+RP4-785G19.2 20 32833759 32834343 - sense 0.0
+RP4-785G19.2 20 32833759 32834343 - antisense 0.0
+AHCY 20 32868074 32899608 - sense 0.0
+AHCY 20 32868074 32899608 - antisense 0.0
+CTD-3216D2.5 20 32869438 32874272 - sense 0.0
+CTD-3216D2.5 20 32869438 32874272 - antisense 0.0
+CTD-3216D2.4 20 32935477 32935591 - sense 0.0
+CTD-3216D2.4 20 32935477 32935591 - antisense 0.0
+ITCH 20 32951041 33099198 + sense 0.0
+ITCH 20 32951041 33099198 + antisense 0.0
+Y_RNA 20 32971971 32972071 - sense 0.0
+Y_RNA 20 32971971 32972071 - antisense 0.0
+CDC42P1 20 32989955 32990502 - sense 0.0
+CDC42P1 20 32989955 32990502 - antisense 0.0
+ITCH-AS1 20 33029397 33029830 - sense 0.0
+ITCH-AS1 20 33029397 33029830 - antisense 0.0
+ITCH-IT1 20 33038735 33042357 + sense 0.0
+ITCH-IT1 20 33038735 33042357 + antisense 0.0
+MIR644A 20 33054130 33054223 + sense 0.0
+MIR644A 20 33054130 33054223 + antisense 0.0
+FDX1P1 20 33063729 33064279 - sense 0.0
+FDX1P1 20 33063729 33064279 - antisense 0.0
+DYNLRB1 20 33104214 33128762 + sense 0.0
+DYNLRB1 20 33104214 33128762 + antisense 0.0
+Y_RNA 20 33114315 33114411 - sense 0.0
+Y_RNA 20 33114315 33114411 - antisense 0.0
+MAP1LC3A 20 33134658 33148149 + sense 0.0
+MAP1LC3A 20 33134658 33148149 + antisense 0.0
+PIGU 20 33148346 33264910 - sense 0.0
+PIGU 20 33148346 33264910 - antisense 0.0
+RP11-346K17.3 20 33276492 33276782 + sense 0.0
+RP11-346K17.3 20 33276492 33276782 + antisense 0.0
+NCOA6 20 33284722 33413452 - sense 0.0
+NCOA6 20 33284722 33413452 - antisense 0.0
+TP53INP2 20 33292094 33301243 + sense 0.0
+TP53INP2 20 33292094 33301243 + antisense 0.0
+HMGB3P1 20 33421378 33422265 - sense 0.0
+HMGB3P1 20 33421378 33422265 - antisense 0.0
+GGT7 20 33432523 33460663 - sense 0.0
+GGT7 20 33432523 33460663 - antisense 0.0
+ACSS2 20 33459949 33515769 + sense 0.0
+ACSS2 20 33459949 33515769 + antisense 0.0
+GSS 20 33516236 33543620 - sense 0.0
+GSS 20 33516236 33543620 - antisense 0.0
+MYH7B 20 33563206 33590240 + sense 0.0
+MYH7B 20 33563206 33590240 + antisense 0.0
+MIR499A 20 33578179 33578300 + sense 0.0
+MIR499A 20 33578179 33578300 + antisense 0.0
+TRPC4AP 20 33590207 33680674 - sense 0.0
+TRPC4AP 20 33590207 33680674 - antisense 0.0
+RNU6-407P 20 33618120 33618223 - sense 0.0
+RNU6-407P 20 33618120 33618223 - antisense 0.0
+EDEM2 20 33703167 33865928 - sense 0.0
+EDEM2 20 33703167 33865928 - antisense 0.0
+SNORD56 20 33704939 33705010 - sense 0.0
+SNORD56 20 33704939 33705010 - antisense 0.0
+PROCR 20 33759876 33765165 + sense 0.0
+PROCR 20 33759876 33765165 + antisense 0.0
+RNA5SP483 20 33783109 33783226 + sense 0.0
+RNA5SP483 20 33783109 33783226 + antisense 0.0
+RP4-614O4.12 20 33789550 33791091 - sense 0.0
+RP4-614O4.12 20 33789550 33791091 - antisense 0.0
+AL121753.1 20 33802392 33802492 + sense 0.0
+AL121753.1 20 33802392 33802492 + antisense 0.0
+MMP24-AS1 20 33804265 33865934 - sense 0.0
+MMP24-AS1 20 33804265 33865934 - antisense 0.0
+MT1P3 20 33805812 33805988 + sense 0.0
+MT1P3 20 33805812 33805988 + antisense 0.0
+MMP24 20 33814457 33864801 + sense 0.0
+MMP24 20 33814457 33864801 + antisense 0.0
+RP4-614O4.11 20 33855688 33867846 - sense 0.0
+RP4-614O4.11 20 33855688 33867846 - antisense 0.0
+EIF6 20 33866714 33872788 - sense 0.0
+EIF6 20 33866714 33872788 - antisense 0.0
+FAM83C-AS1 20 33873054 33873559 + sense 0.0
+FAM83C-AS1 20 33873054 33873559 + antisense 0.0
+FAM83C 20 33873534 33880204 - sense 0.0
+FAM83C 20 33873534 33880204 - antisense 0.0
+UQCC1 20 33890369 33999944 - sense 0.0
+UQCC1 20 33890369 33999944 - antisense 0.0
+GDF5OS 20 34020827 34023248 + sense 0.0
+GDF5OS 20 34020827 34023248 + antisense 0.0
+GDF5 20 34021145 34042568 - sense 0.0
+GDF5 20 34021145 34042568 - antisense 0.0
+MIR1289-1 20 34041776 34041919 - sense 0.0
+MIR1289-1 20 34041776 34041919 - antisense 0.0
+CEP250 20 34042985 34099804 + sense 0.0
+CEP250 20 34042985 34099804 + antisense 0.0
+RP3-477O4.14 20 34064028 34078808 - sense 0.0
+RP3-477O4.14 20 34064028 34078808 - antisense 0.0
+RP3-477O4.16 20 34106682 34107108 + sense 0.0
+RP3-477O4.16 20 34106682 34107108 + antisense 0.0
+RP3-477O4.5 20 34108569 34117481 - sense 0.0
+RP3-477O4.5 20 34108569 34117481 - antisense 0.0
+C20orf173 20 34111014 34117481 - sense 0.0
+C20orf173 20 34111014 34117481 - antisense 0.0
+ERGIC3 20 34129770 34145405 + sense 0.0
+ERGIC3 20 34129770 34145405 + antisense 0.0
+RPL36P4 20 34132175 34132492 - sense 0.0
+RPL36P4 20 34132175 34132492 - antisense 0.0
+FER1L4 20 34146507 34195484 - sense 0.0
+FER1L4 20 34146507 34195484 - antisense 0.0
+RPL37P1 20 34176246 34176529 + sense 0.0
+RPL37P1 20 34176246 34176529 + antisense 0.0
+SPAG4 20 34203814 34208971 + sense 0.0
+SPAG4 20 34203814 34208971 + antisense 0.0
+CPNE1 20 34213953 34252878 - sense 0.0
+CPNE1 20 34213953 34252878 - antisense 0.0
+RP1-309K20.6 20 34220262 34262466 - sense 0.0
+RP1-309K20.6 20 34220262 34262466 - antisense 0.0
+RN7SKP271 20 34231065 34231384 + sense 0.0
+RN7SKP271 20 34231065 34231384 + antisense 0.0
+RNU6-759P 20 34235250 34235352 - sense 0.0
+RNU6-759P 20 34235250 34235352 - antisense 0.0
+RBM12 20 34236847 34252878 - sense 0.0
+RBM12 20 34236847 34252878 - antisense 0.0
+NFS1 20 34255977 34287281 - sense 0.0
+NFS1 20 34255977 34287281 - antisense 0.0
+ROMO1 20 34287194 34288906 + sense 0.0
+ROMO1 20 34287194 34288906 + antisense 0.0
+RBM39 20 34291531 34330234 - sense 0.0
+RBM39 20 34291531 34330234 - antisense 0.0
+snoU13 20 34304393 34304492 + sense 0.0
+snoU13 20 34304393 34304492 + antisense 0.0
+RPF2P1 20 34340736 34341641 + sense 0.0
+RPF2P1 20 34340736 34341641 + antisense 0.0
+RNU6-1166P 20 34357707 34357789 - sense 0.0
+RNU6-1166P 20 34357707 34357789 - antisense 0.0
+PHF20 20 34359896 34538303 + sense 0.0
+PHF20 20 34359896 34538303 + antisense 0.0
+COX7BP2 20 34438596 34438837 - sense 0.0
+COX7BP2 20 34438596 34438837 - antisense 0.0
+Y_RNA 20 34441174 34441286 - sense 0.0
+Y_RNA 20 34441174 34441286 - antisense 0.0
+HIGD1AP16 20 34466398 34466655 + sense 0.0
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+RNU4-40P 20 34475581 34475723 + sense 0.0
+RNU4-40P 20 34475581 34475723 + antisense 0.0
+RNU6-937P 20 34516492 34516597 - sense 0.0
+RNU6-937P 20 34516492 34516597 - antisense 0.0
+SCAND1 20 34541539 34547394 - sense 0.0
+SCAND1 20 34541539 34547394 - antisense 0.0
+CNBD2 20 34556512 34618622 + sense 0.0
+CNBD2 20 34556512 34618622 + antisense 0.0
+LINC00657 20 34633544 34638882 - sense 0.0
+LINC00657 20 34633544 34638882 - antisense 0.0
+RP4-550H1.4 20 34660363 34673182 + sense 0.0
+RP4-550H1.4 20 34660363 34673182 + antisense 0.0
+HMGB3P2 20 34663940 34664523 - sense 0.0
+HMGB3P2 20 34663940 34664523 - antisense 0.0
+RP4-550H1.5 20 34674174 34676114 - sense 0.0
+RP4-550H1.5 20 34674174 34676114 - antisense 0.0
+EPB41L1 20 34679426 34820721 + sense 0.0
+EPB41L1 20 34679426 34820721 + antisense 0.0
+snoU13 20 34708884 34708994 + sense 0.0
+snoU13 20 34708884 34708994 + antisense 0.0
+RP11-234K24.3 20 34736648 34743682 - sense 0.0
+RP11-234K24.3 20 34736648 34743682 - antisense 0.0
+AL121895.1 20 34756461 34758180 - sense 0.0
+AL121895.1 20 34756461 34758180 - antisense 0.0
+AAR2 20 34824381 34858840 + sense 0.0
+AAR2 20 34824381 34858840 + antisense 0.0
+DLGAP4 20 34894258 35157040 + sense 0.0
+DLGAP4 20 34894258 35157040 + antisense 0.0
+RP5-977B1.7 20 35136563 35201794 - sense 0.0
+RP5-977B1.7 20 35136563 35201794 - antisense 0.0
+MYL9 20 35169887 35178228 + sense 0.0
+MYL9 20 35169887 35178228 + antisense 0.0
+RP5-977B1.11 20 35177530 35232932 - sense 0.0
+RP5-977B1.11 20 35177530 35232932 - antisense 0.0
+TGIF2 20 35201891 35222353 + sense 0.0
+TGIF2 20 35201891 35222353 + antisense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + sense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + antisense 0.0
+C20orf24 20 35234137 35240960 + sense 0.0
+C20orf24 20 35234137 35240960 + antisense 0.0
+SLA2 20 35240721 35274619 - sense 0.0
+SLA2 20 35240721 35274619 - antisense 0.0
+HNRNPA3P2 20 35248806 35249826 + sense 0.0
+HNRNPA3P2 20 35248806 35249826 + antisense 0.0
+NDRG3 20 35280169 35374481 - sense 0.0
+NDRG3 20 35280169 35374481 - antisense 0.0
+Y_RNA 20 35296962 35297073 - sense 0.0
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+AL132768.1 20 35374459 35374533 + sense 0.0
+AL132768.1 20 35374459 35374533 + antisense 0.0
+DSN1 20 35380194 35402221 - sense 0.0
+DSN1 20 35380194 35402221 - antisense 0.0
+SOGA1 20 35405845 35492089 - sense 0.0
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+RN7SL156P 20 35498502 35498793 + sense 0.0
+RN7SL156P 20 35498502 35498793 + antisense 0.0
+TLDC2 20 35504524 35522638 + sense 0.0
+TLDC2 20 35504524 35522638 + antisense 0.0
+SAMHD1 20 35518632 35580246 - sense 0.0
+SAMHD1 20 35518632 35580246 - antisense 0.0
+RBL1 20 35624752 35724398 - sense 0.0
+RBL1 20 35624752 35724398 - antisense 0.0
+RPS3AP3 20 35650146 35650387 - sense 0.0
+RPS3AP3 20 35650146 35650387 - antisense 0.0
+RPS27AP3 20 35677657 35678110 + sense 0.0
+RPS27AP3 20 35677657 35678110 + antisense 0.0
+RBL1 20 35724188 35725581 + sense 0.0
+RBL1 20 35724188 35725581 + antisense 0.0
+MROH8 20 35729629 35807991 - sense 0.0
+MROH8 20 35729629 35807991 - antisense 0.0
+RP3-343K2.4 20 35794177 35794715 - sense 0.0
+RP3-343K2.4 20 35794177 35794715 - antisense 0.0
+RPN2 20 35806813 35870022 + sense 0.0
+RPN2 20 35806813 35870022 + antisense 0.0
+GHRH 20 35879489 35890238 - sense 0.0
+GHRH 20 35879489 35890238 - antisense 0.0
+MANBAL 20 35918041 35945663 + sense 0.0
+MANBAL 20 35918041 35945663 + antisense 0.0
+SRC 20 35973088 36034453 + sense 0.0
+SRC 20 35973088 36034453 + antisense 0.0
+RPL7AP14 20 36073135 36073936 - sense 0.0
+RPL7AP14 20 36073135 36073936 - antisense 0.0
+BLCAP 20 36120874 36156333 - sense 0.0
+BLCAP 20 36120874 36156333 - antisense 0.0
+NNAT 20 36149617 36152092 + sense 0.0
+NNAT 20 36149617 36152092 + antisense 0.0
+PPIAP3 20 36158441 36158945 + sense 0.0
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+GLRXP 20 36231254 36231587 - sense 0.0
+GLRXP 20 36231254 36231587 - antisense 0.0
+LINC00489 20 36247700 36251521 - sense 0.0
+LINC00489 20 36247700 36251521 - antisense 0.0
+RP4-640H8.2 20 36305312 36311636 + sense 0.0
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+CTNNBL1 20 36322408 36500531 + sense 0.0
+CTNNBL1 20 36322408 36500531 + antisense 0.0
+VSTM2L 20 36531499 36573752 + sense 0.0
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+RN7SKP185 20 36603558 36603883 - sense 0.0
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+TTI1 20 36611409 36661870 - sense 0.0
+TTI1 20 36611409 36661870 - antisense 0.0
+RPRD1B 20 36661948 36720768 + sense 0.0
+RPRD1B 20 36661948 36720768 + antisense 0.0
+Y_RNA 20 36681049 36681148 - sense 0.0
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+RN7SL237P 20 36726798 36727102 - sense 0.0
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+TGM2 20 36756863 36794980 - sense 0.0
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+KIAA1755 20 36838890 36889174 - sense 0.0
+KIAA1755 20 36838890 36889174 - antisense 0.0
+BPI 20 36888551 36965907 + sense 0.0
+BPI 20 36888551 36965907 + antisense 0.0
+CTD-2308N23.2 20 36916733 36954938 - sense 0.0
+CTD-2308N23.2 20 36916733 36954938 - antisense 0.0
+LBP 20 36974759 37005665 + sense 0.0
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+RP4-564F22.5 20 37034658 37045444 - sense 0.0
+RP4-564F22.5 20 37034658 37045444 - antisense 0.0
+SNHG17 20 37049235 37063996 - sense 0.0
+SNHG17 20 37049235 37063996 - antisense 0.0
+SNORA71B 20 37053843 37053979 - sense 0.0
+SNORA71B 20 37053843 37053979 - antisense 0.0
+SNORA71A 20 37055952 37056085 - sense 0.0
+SNORA71A 20 37055952 37056085 - antisense 0.0
+SNORA71C 20 37058313 37058446 - sense 0.0
+SNORA71C 20 37058313 37058446 - antisense 0.0
+SNORA71D 20 37062508 37062641 - sense 0.0
+SNORA71D 20 37062508 37062641 - antisense 0.0
+SNORA71 20 37070679 37070812 + sense 0.0
+SNORA71 20 37070679 37070812 + antisense 0.0
+SNHG11 20 37075221 37079564 + sense 0.0
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+SNORA60 20 37078013 37078146 + sense 0.0
+SNORA60 20 37078013 37078146 + antisense 0.0
+RALGAPB 20 37101459 37207504 + sense 0.0
+RALGAPB 20 37101459 37207504 + antisense 0.0
+MIR548O2 20 37145206 37145275 + sense 0.0
+MIR548O2 20 37145206 37145275 + antisense 0.0
+RPS3P2 20 37166401 37167101 + sense 0.0
+RPS3P2 20 37166401 37167101 + antisense 0.0
+ADIG 20 37209838 37217106 + sense 0.0
+ADIG 20 37209838 37217106 + antisense 0.0
+ARHGAP40 20 37230577 37279678 + sense 0.0
+ARHGAP40 20 37230577 37279678 + antisense 0.0
+RP5-1100H13.3 20 37243556 37244119 - sense 0.0
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+SLC32A1 20 37353105 37358015 + sense 0.0
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+ACTR5 20 37377085 37400834 + sense 0.0
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+RN7SKP173 20 37390171 37390485 + sense 0.0
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+PPP1R16B 20 37434348 37551667 + sense 0.0
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+RN7SL116P 20 37501413 37501720 + sense 0.0
+RN7SL116P 20 37501413 37501720 + antisense 0.0
+FAM83D 20 37554955 37581703 + sense 0.0
+FAM83D 20 37554955 37581703 + antisense 0.0
+RP4-616B8.4 20 37590568 37590754 - sense 0.0
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+DHX35 20 37590942 37668366 + sense 0.0
+DHX35 20 37590942 37668366 + antisense 0.0
+NPM1P19 20 37606354 37607065 - sense 0.0
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+RP4-705O1.1 20 37842420 37853391 - sense 0.0
+RP4-705O1.1 20 37842420 37853391 - antisense 0.0
+AL121588.1 20 37900183 37900258 + sense 0.0
+AL121588.1 20 37900183 37900258 + antisense 0.0
+ATG3P1 20 37957657 37958567 - sense 0.0
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+RN7SL680P 20 37977739 37978035 - sense 0.0
+RN7SL680P 20 37977739 37978035 - antisense 0.0
+RN7SL194P 20 37981402 37981674 + sense 0.0
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+RP5-1031J8.1 20 38414363 38441871 + sense 0.0
+RP5-1031J8.1 20 38414363 38441871 + antisense 0.0
+HSPE1P1 20 38561564 38561881 - sense 0.0
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+RP11-101E14.2 20 38633119 38637171 + sense 0.0
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+RP11-101E14.3 20 38660227 38672531 + sense 0.0
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+AL009050.1 20 38731860 38731998 - sense 0.0
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+RP1-191L6.2 20 38749682 38754998 + sense 0.0
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+SNORD112 20 39045515 39045586 + sense 0.0
+SNORD112 20 39045515 39045586 + antisense 0.0
+MAFB 20 39314488 39317880 - sense 0.0
+MAFB 20 39314488 39317880 - antisense 0.0
+RP4-644L1.2 20 39326535 39327256 - sense 0.0
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+RNA5SP484 20 39482759 39482869 - sense 0.0
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+RNU2-52P 20 39652845 39653034 + sense 0.0
+RNU2-52P 20 39652845 39653034 + antisense 0.0
+TOP1 20 39657458 39753127 + sense 0.0
+TOP1 20 39657458 39753127 + antisense 0.0
+RP1-1J6.2 20 39726969 39766643 - sense 0.0
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+PLCG1 20 39765600 39811629 + sense 0.0
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+ZHX3 20 39807088 39946312 - sense 0.0
+ZHX3 20 39807088 39946312 - antisense 0.0
+RP3-511B24.6 20 39809096 39825427 + sense 0.0
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+RP3-511B24.5 20 39825287 39825578 - sense 0.0
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+RPL23AP81 20 39825331 39825797 + sense 0.0
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+RN7SL615P 20 39918922 39919217 - sense 0.0
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+RP3-450M14.1 20 39959763 39960300 + sense 0.0
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+LPIN3 20 39969560 39989222 + sense 0.0
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+EMILIN3 20 39988606 39995467 - sense 0.0
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+RP4-620E11.5 20 40011023 40011747 + sense 0.0
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+CHD6 20 40030741 40247133 - sense 0.0
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+RP4-620E11.4 20 40087994 40090584 - sense 0.0
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+RPL12P11 20 40176061 40176561 + sense 0.0
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+RNU6-1018P 20 40313625 40313730 - sense 0.0
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+Y_RNA 20 40328260 40328355 - sense 0.0
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+SNORA26 20 40341118 40341239 - sense 0.0
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+RP5-1121H13.4 20 40619780 40692609 + sense 0.0
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+RP5-1121H13.1 20 40625771 40628037 - sense 0.0
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+RP5-1121H13.3 20 40642674 40644118 - sense 0.0
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+PTPRT 20 40701392 41818610 - sense 0.0
+PTPRT 20 40701392 41818610 - antisense 0.0
+RP4-730D4.1 20 41235334 41236199 + sense 0.0
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+RP1-232N11.2 20 41314044 41317202 + sense 0.0
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+RP4-753D4.2 20 41597383 41600132 + sense 0.0
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+RN7SKP100 20 41691966 41692249 + sense 0.0
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+RP1-269M15.3 20 41818862 41830011 + sense 0.0
+RP1-269M15.3 20 41818862 41830011 + antisense 0.0
+RN7SL666P 20 41850846 41851147 + sense 0.0
+RN7SL666P 20 41850846 41851147 + antisense 0.0
+PPIAP21 20 41859400 41859900 + sense 0.0
+PPIAP21 20 41859400 41859900 + antisense 0.0
+SCARNA15 20 41933195 41933319 + sense 0.0
+SCARNA15 20 41933195 41933319 + antisense 0.0
+RP5-862K6.4 20 42017282 42017681 - sense 0.0
+RP5-862K6.4 20 42017282 42017681 - antisense 0.0
+RNU6-743P 20 42034113 42034218 + sense 0.0
+RNU6-743P 20 42034113 42034218 + antisense 0.0
+EIF4EBP2P1 20 42051836 42052178 - sense 0.0
+EIF4EBP2P1 20 42051836 42052178 - antisense 0.0
+Y_RNA 20 42079799 42079900 - sense 0.0
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+SRSF6 20 42086568 42092245 + sense 0.0
+SRSF6 20 42086568 42092245 + antisense 0.0
+RNU6-1251P 20 42101653 42101759 + sense 0.0
+RNU6-1251P 20 42101653 42101759 + antisense 0.0
+L3MBTL1 20 42136320 42179590 + sense 0.0
+L3MBTL1 20 42136320 42179590 + antisense 0.0
+RP1-138B7.4 20 42151901 42152212 - sense 0.0
+RP1-138B7.4 20 42151901 42152212 - antisense 0.0
+RP1-138B7.5 20 42178029 42179589 - sense 0.0
+RP1-138B7.5 20 42178029 42179589 - antisense 0.0
+SGK2 20 42187608 42216877 + sense 0.0
+SGK2 20 42187608 42216877 + antisense 0.0
+IFT52 20 42219571 42275936 + sense 0.0
+IFT52 20 42219571 42275936 + antisense 0.0
+RPL27AP 20 42281163 42281931 + sense 0.0
+RPL27AP 20 42281163 42281931 + antisense 0.0
+MYBL2 20 42295754 42345136 + sense 0.0
+MYBL2 20 42295754 42345136 + antisense 0.0
+GTSF1L 20 42354804 42355638 - sense 0.0
+GTSF1L 20 42354804 42355638 - antisense 0.0
+RNU6-639P 20 42425077 42425183 - sense 0.0
+RNU6-639P 20 42425077 42425183 - antisense 0.0
+RP5-1030M6.3 20 42523360 42524108 + sense 0.0
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+TOX2 20 42543504 42698256 + sense 0.0
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+RN7SL443P 20 42635888 42636178 + sense 0.0
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+JPH2 20 42740335 42816218 - sense 0.0
+JPH2 20 42740335 42816218 - antisense 0.0
+OSER1 20 42825136 42839431 - sense 0.0
+OSER1 20 42825136 42839431 - antisense 0.0
+OSER1-AS1 20 42839600 42854667 + sense 0.0
+OSER1-AS1 20 42839600 42854667 + antisense 0.0
+GDAP1L1 20 42875887 42909013 + sense 0.0
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+FITM2 20 42931478 42939809 - sense 0.0
+FITM2 20 42931478 42939809 - antisense 0.0
+R3HDML 20 42965626 42979875 + sense 0.0
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+Y_RNA 20 42973479 42973569 + sense 0.0
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+RP5-881L22.5 20 42976192 42983825 - sense 0.0
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+HNF4A 20 42984340 43061485 + sense 0.0
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+HNF4A-AS1 20 43001386 43024346 - sense 0.0
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+RP5-881L22.6 20 43018264 43020177 - sense 0.0
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+MIR3646 20 43036760 43036843 + sense 0.0
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+AL132772.1 20 43053692 43053781 - sense 0.0
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+RP5-1013A22.5 20 43062837 43063236 + sense 0.0
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+RP5-1013A22.2 20 43077417 43078732 - sense 0.0
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+C20orf62 20 43080624 43093984 - sense 0.0
+C20orf62 20 43080624 43093984 - antisense 0.0
+RPL37AP1 20 43095204 43095482 - sense 0.0
+RPL37AP1 20 43095204 43095482 - antisense 0.0
+TTPAL 20 43104526 43123244 + sense 0.0
+TTPAL 20 43104526 43123244 + antisense 0.0
+SERINC3 20 43124862 43150750 - sense 0.0
+SERINC3 20 43124862 43150750 - antisense 0.0
+PKIG 20 43160426 43252888 + sense 0.0
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+Z97053.1 20 43234346 43248126 - sense 0.0
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+ADA 20 43248163 43280874 - sense 0.0
+ADA 20 43248163 43280874 - antisense 0.0
+RP11-445H22.3 20 43285092 43324737 - sense 0.0
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+RP11-445H22.4 20 43323533 43374662 - sense 0.0
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+WISP2 20 43343485 43357150 + sense 0.0
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+KCNK15 20 43374421 43379675 + sense 0.0
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+RIMS4 20 43380449 43438979 - sense 0.0
+RIMS4 20 43380449 43438979 - antisense 0.0
+RN7SL31P 20 43509479 43509775 - sense 0.0
+RN7SL31P 20 43509479 43509775 - antisense 0.0
+YWHAB 20 43514317 43537173 + sense 0.0
+YWHAB 20 43514317 43537173 + antisense 0.0
+PABPC1L 20 43538703 43587676 + sense 0.0
+PABPC1L 20 43538703 43587676 + antisense 0.0
+TOMM34 20 43570771 43589127 - sense 0.0
+TOMM34 20 43570771 43589127 - antisense 0.0
+STK4-AS1 20 43592435 43595043 - sense 0.0
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+STK4 20 43595115 43708600 + sense 0.0
+STK4 20 43595115 43708600 + antisense 0.0
+Y_RNA 20 43632989 43633095 + sense 0.0
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+KCNS1 20 43720951 43729753 - sense 0.0
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+WFDC5 20 43738093 43743813 - sense 0.0
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+WFDC12 20 43752066 43753106 - sense 0.0
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+PI3 20 43803517 43805185 + sense 0.0
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+SEMG1 20 43835638 43838413 + sense 0.0
+SEMG1 20 43835638 43838413 + antisense 0.0
+SEMG2 20 43849941 43853099 + sense 0.0
+SEMG2 20 43849941 43853099 + antisense 0.0
+RP1-300I2.3 20 43858458 43858832 + sense 0.0
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+RP1-300I2.2 20 43859509 43861972 + sense 0.0
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+SLPI 20 43880880 43883205 - sense 0.0
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+MATN4 20 43922085 43937169 - sense 0.0
+MATN4 20 43922085 43937169 - antisense 0.0
+RBPJL 20 43935491 43945803 + sense 0.0
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+SDC4 20 43953928 43977064 - sense 0.0
+SDC4 20 43953928 43977064 - antisense 0.0
+SYS1 20 43990577 44005438 + sense 0.0
+SYS1 20 43990577 44005438 + antisense 0.0
+SYS1-DBNDD2 20 43991840 44039250 + sense 0.0
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+TP53TG5 20 44002526 44036529 - sense 0.0
+TP53TG5 20 44002526 44036529 - antisense 0.0
+RP3-453C12.8 20 44016987 44017345 - sense 0.0
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+DBNDD2 20 44034697 44039250 + sense 0.0
+DBNDD2 20 44034697 44039250 + antisense 0.0
+PIGT 20 44044717 44054884 + sense 0.0
+PIGT 20 44044717 44054884 + antisense 0.0
+AL031663.2 20 44074071 44077220 + sense 0.0
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+RP3-461P17.10 20 44076042 44076982 + sense 0.0
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+AL031663.1 20 44095910 44107452 - sense 0.0
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+WFDC2 20 44098346 44110172 + sense 0.0
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+RP3-461P17.9 20 44116253 44118888 + sense 0.0
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+RPL5P2 20 44119458 44120311 - sense 0.0
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+SPINT3 20 44141101 44144264 - sense 0.0
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+WFDC6 20 44162835 44168134 - sense 0.0
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+RP3-461P17.6 20 44165435 44165653 - sense 0.0
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+EPPIN 20 44165625 44176391 - sense 0.0
+EPPIN 20 44165625 44176391 - antisense 0.0
+EPPIN-WFDC6 20 44165625 44176065 - sense 0.0
+EPPIN-WFDC6 20 44165625 44176065 - antisense 0.0
+HSPD1P21 20 44168622 44168866 - sense 0.0
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+WFDC8 20 44179792 44207965 - sense 0.0
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+RNA5SP485 20 44188397 44188515 - sense 0.0
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+CCNB1IP1P2 20 44196629 44197446 - sense 0.0
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+WFDC9 20 44236578 44259907 - sense 0.0
+WFDC9 20 44236578 44259907 - antisense 0.0
+WFDC10A 20 44258165 44259835 + sense 0.0
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+RPS2P7 20 44269125 44270009 - sense 0.0
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+WFDC11 20 44277202 44298909 - sense 0.0
+WFDC11 20 44277202 44298909 - antisense 0.0
+WFDC10B 20 44313292 44333658 - sense 0.0
+WFDC10B 20 44313292 44333658 - antisense 0.0
+WFDC13 20 44330655 44337456 + sense 0.0
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+MIR3617 20 44333741 44333819 - sense 0.0
+MIR3617 20 44333741 44333819 - antisense 0.0
+SPINT4 20 44350990 44354469 + sense 0.0
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+HNRNPA1P3 20 44374376 44374926 - sense 0.0
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+WFDC3 20 44376583 44420571 - sense 0.0
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+SPINT5P 20 44378559 44378713 + sense 0.0
+SPINT5P 20 44378559 44378713 + antisense 0.0
+RNU6ATAC38P 20 44407337 44407462 + sense 0.0
+RNU6ATAC38P 20 44407337 44407462 + antisense 0.0
+DNTTIP1 20 44420576 44440066 + sense 0.0
+DNTTIP1 20 44420576 44440066 + antisense 0.0
+UBE2C 20 44441215 44445596 + sense 0.0
+UBE2C 20 44441215 44445596 + antisense 0.0
+TNNC2 20 44451853 44462384 - sense 0.0
+TNNC2 20 44451853 44462384 - antisense 0.0
+SNX21 20 44462449 44471914 + sense 0.0
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+ACOT8 20 44470360 44486045 - sense 0.0
+ACOT8 20 44470360 44486045 - antisense 0.0
+ZSWIM3 20 44486256 44507761 + sense 0.0
+ZSWIM3 20 44486256 44507761 + antisense 0.0
+ZSWIM1 20 44509866 44513905 + sense 0.0
+ZSWIM1 20 44509866 44513905 + antisense 0.0
+SPATA25 20 44515128 44516274 - sense 0.0
+SPATA25 20 44515128 44516274 - antisense 0.0
+NEURL2 20 44517264 44519926 - sense 0.0
+NEURL2 20 44517264 44519926 - antisense 0.0
+CTSA 20 44518783 44527459 + sense 0.0
+CTSA 20 44518783 44527459 + antisense 0.0
+RP3-337O18.9 20 44521333 44522058 - sense 0.0
+RP3-337O18.9 20 44521333 44522058 - antisense 0.0
+PLTP 20 44527399 44540794 - sense 0.0
+PLTP 20 44527399 44540794 - antisense 0.0
+PCIF1 20 44563267 44576662 + sense 0.0
+PCIF1 20 44563267 44576662 + antisense 0.0
+ZNF335 20 44577292 44600833 - sense 0.0
+ZNF335 20 44577292 44600833 - antisense 0.0
+FTLP1 20 44603888 44604714 - sense 0.0
+FTLP1 20 44603888 44604714 - antisense 0.0
+MMP9 20 44637547 44645200 + sense 0.0
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+RP11-465L10.10 20 44642141 44650712 - sense 0.0
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+AL162458.1 20 44644111 44644231 + sense 0.0
+AL162458.1 20 44644111 44644231 + antisense 0.0
+SLC12A5 20 44650356 44688784 + sense 0.0
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+NCOA5 20 44689624 44718591 - sense 0.0
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+RPL13P2 20 44728157 44728815 + sense 0.0
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+CD40 20 44746911 44758502 + sense 0.0
+CD40 20 44746911 44758502 + antisense 0.0
+RP5-998H6.2 20 44797043 44799876 - sense 0.0
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+CDH22 20 44802372 44937137 - sense 0.0
+CDH22 20 44802372 44937137 - antisense 0.0
+SLC35C2 20 44978167 44993043 - sense 0.0
+SLC35C2 20 44978167 44993043 - antisense 0.0
+ELMO2 20 44994688 45061704 - sense 0.0
+ELMO2 20 44994688 45061704 - antisense 0.0
+ZNF663P 20 45042867 45087915 - sense 0.0
+ZNF663P 20 45042867 45087915 - antisense 0.0
+MKRN7P 20 45092541 45093763 - sense 0.0
+MKRN7P 20 45092541 45093763 - antisense 0.0
+ZNF840 20 45113100 45121279 + sense 0.0
+ZNF840 20 45113100 45121279 + antisense 0.0
+ZNF334 20 45129701 45142198 - sense 0.0
+ZNF334 20 45129701 45142198 - antisense 0.0
+OCSTAMP 20 45169585 45179213 - sense 0.0
+OCSTAMP 20 45169585 45179213 - antisense 0.0
+SLC13A3 20 45186463 45304714 - sense 0.0
+SLC13A3 20 45186463 45304714 - antisense 0.0
+TP53RK 20 45313004 45318418 - sense 0.0
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+RP1-28H20.3 20 45318298 45318928 + sense 0.0
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+SLC2A10 20 45338126 45364965 + sense 0.0
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+AL031055.1 20 45439477 45439561 - sense 0.0
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+RN7SKP33 20 45487972 45488311 + sense 0.0
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+RP11-323C15.1 20 45492202 45492743 - sense 0.0
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+EYA2 20 45523263 45817492 + sense 0.0
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+RP11-323C15.2 20 45529782 45530365 - sense 0.0
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+GAPDHP54 20 45626235 45627127 + sense 0.0
+GAPDHP54 20 45626235 45627127 + antisense 0.0
+RP5-1050K3.3 20 45700504 45700875 + sense 0.0
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+RP5-890O15.3 20 45789477 45790339 - sense 0.0
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+MIR3616 20 45795609 45795700 + sense 0.0
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+ZMYND8 20 45837859 45985567 - sense 0.0
+ZMYND8 20 45837859 45985567 - antisense 0.0
+RN7SL243P 20 45936797 45937126 - sense 0.0
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+AL031666.1 20 45943269 45943336 - sense 0.0
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+AL031666.2 20 45947246 45949467 + sense 0.0
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+RP4-569M23.4 20 45976881 45977886 - sense 0.0
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+RP4-569M23.2 20 45981305 45983377 + sense 0.0
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+RP1-148H17.1 20 46020673 46041071 - sense 0.0
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+RPL35AP 20 46106958 46107754 - sense 0.0
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+RNU6-497P 20 46113022 46113125 - sense 0.0
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+RNU6-563P 20 46121722 46121829 - sense 0.0
+RNU6-563P 20 46121722 46121829 - antisense 0.0
+NCOA3 20 46130601 46285621 + sense 0.0
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+AL021394.1 20 46199679 46199759 + sense 0.0
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+RP5-1049G16.4 20 46259010 46260182 - sense 0.0
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+SULF2 20 46285092 46415360 - sense 0.0
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+CTD-2653D5.1 20 46306645 46315041 + sense 0.0
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+RNU7-173P 20 46455713 46455788 - sense 0.0
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+SRMP1 20 46488532 46489416 + sense 0.0
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+RNA5SP486 20 46501935 46502017 + sense 0.0
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+RNU7-92P 20 46533092 46533167 + sense 0.0
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+RP11-347D21.1 20 46579543 46580799 + sense 0.0
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+RP11-347D21.3 20 46609232 46617488 - sense 0.0
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+RP11-347D21.4 20 46612148 46613057 + sense 0.0
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+SNORD36 20 46764686 46764766 - sense 0.0
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+LINC00494 20 46988693 46999372 + sense 0.0
+LINC00494 20 46988693 46999372 + antisense 0.0
+RP1-66N13.1 20 47012066 47013638 - sense 0.0
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+RNU7-144P 20 47122480 47122555 - sense 0.0
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+PREX1 20 47240790 47444420 - sense 0.0
+PREX1 20 47240790 47444420 - antisense 0.0
+AL035106.1 20 47355867 47355985 - sense 0.0
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+ARFGEF2 20 47538427 47653230 + sense 0.0
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+SNAP23P 20 47654894 47655139 - sense 0.0
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+RP1-155G6.4 20 47657000 47662581 - sense 0.0
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+CSE1L 20 47662849 47713489 + sense 0.0
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+STAU1 20 47729878 47804904 - sense 0.0
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+ARPC3P1 20 47751017 47751549 + sense 0.0
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+DDX27 20 47835884 47860614 + sense 0.0
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+ZNFX1 20 47854483 47894963 - sense 0.0
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+ZFAS1 20 47894715 47905797 + sense 0.0
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+SNORD12C 20 47895477 47895565 + sense 0.0
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+SNORD12B 20 47896856 47896946 + sense 0.0
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+SNORD12 20 47897220 47897309 + sense 0.0
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+KCNB1 20 47980414 48099184 - sense 0.0
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+PTGIS 20 48120411 48184683 - sense 0.0
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+AL118525.1 20 48203218 48203311 + sense 0.0
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+B4GALT5 20 48249482 48330415 - sense 0.0
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+SNRPFP1 20 48346128 48346379 - sense 0.0
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+RNU6-919P 20 48411348 48411451 + sense 0.0
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+SLC9A8 20 48429250 48508779 + sense 0.0
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+RNU7-72P 20 48444529 48444590 + sense 0.0
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+RP5-1041C10.3 20 48445662 48447622 + sense 0.0
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+SPATA2 20 48519928 48532080 - sense 0.0
+SPATA2 20 48519928 48532080 - antisense 0.0
+Y_RNA 20 48537134 48537231 - sense 0.0
+Y_RNA 20 48537134 48537231 - antisense 0.0
+RNF114 20 48552948 48570429 + sense 0.0
+RNF114 20 48552948 48570429 + antisense 0.0
+snoU13 20 48556833 48556937 - sense 0.0
+snoU13 20 48556833 48556937 - antisense 0.0
+KRT18P4 20 48573282 48574569 + sense 0.0
+KRT18P4 20 48573282 48574569 + antisense 0.0
+RNU6-147P 20 48588643 48588749 + sense 0.0
+RNU6-147P 20 48588643 48588749 + antisense 0.0
+SNAI1 20 48599536 48605423 + sense 0.0
+SNAI1 20 48599536 48605423 + antisense 0.0
+TRERNA1 20 48657253 48658041 - sense 0.0
+TRERNA1 20 48657253 48658041 - antisense 0.0
+TMEM189-UBE2V1 20 48697661 48770174 - sense 0.0
+TMEM189-UBE2V1 20 48697661 48770174 - antisense 0.0
+UBE2V1 20 48697661 48732496 - sense 0.0
+UBE2V1 20 48697661 48732496 - antisense 0.0
+TMEM189 20 48697663 48770335 - sense 0.0
+TMEM189 20 48697663 48770335 - antisense 0.0
+RP11-112L6.3 20 48780001 48782639 - sense 0.0
+RP11-112L6.3 20 48780001 48782639 - antisense 0.0
+RP11-112L6.2 20 48782899 48788279 + sense 0.0
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+RP11-112L6.4 20 48789087 48793096 + sense 0.0
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+CEBPB 20 48807376 48809212 + sense 0.0
+CEBPB 20 48807376 48809212 + antisense 0.0
+RP11-290F20.3 20 48884023 48896332 + sense 0.0
+RP11-290F20.3 20 48884023 48896332 + antisense 0.0
+RP11-290F20.1 20 48909257 48931459 + sense 0.0
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+RP11-290F20.2 20 48927248 48937879 - sense 0.0
+RP11-290F20.2 20 48927248 48937879 - antisense 0.0
+RN7SL636P 20 49045729 49046020 - sense 0.0
+RN7SL636P 20 49045729 49046020 - antisense 0.0
+COX6CP2 20 49096304 49096528 + sense 0.0
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+PTPN1 20 49126891 49201299 + sense 0.0
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+RN7SL672P 20 49174221 49174535 - sense 0.0
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+Y_RNA 20 49179546 49179647 + sense 0.0
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+RP4-530I15.9 20 49187512 49194578 - sense 0.0
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+MIR645 20 49202323 49202416 + sense 0.0
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+FAM65C 20 49202645 49308065 - sense 0.0
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+RPL36P2 20 49237300 49237614 + sense 0.0
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+BCAS4 20 49411431 49493714 + sense 0.0
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+TMSB4XP6 20 49457152 49457286 - sense 0.0
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+ADNP 20 49505585 49547958 - sense 0.0
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+PSMD10P1 20 49530268 49530948 + sense 0.0
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+DPM1 20 49551404 49575092 - sense 0.0
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+AL034553.1 20 49555183 49555269 + sense 0.0
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+MOCS3 20 49575363 49577820 + sense 0.0
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+KCNG1 20 49620193 49639666 - sense 0.0
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+RPSAP1 20 49747325 49748204 - sense 0.0
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+AL035457.1 20 49794042 49794136 + sense 0.0
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+AL079339.1 20 49993772 49993858 - sense 0.0
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+NFATC2 20 50003494 50179370 - sense 0.0
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+MIR3194 20 50069442 50069514 - sense 0.0
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+SALL4 20 50400581 50419059 - sense 0.0
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+RNU6-347P 20 50518830 50518934 + sense 0.0
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+RNU7-6P 20 50521508 50521569 + sense 0.0
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+RN7SL603P 20 50557083 50557372 - sense 0.0
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+ZFP64 20 50668202 50820847 - sense 0.0
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+ERP29P1 20 50726883 50727588 - sense 0.0
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+MRPS33P4 20 51127791 51128107 + sense 0.0
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+RP4-715N11.2 20 51288456 51307468 + sense 0.0
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+RP11-80K6.2 20 51474877 51479394 - sense 0.0
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+RPL36P1 20 51506701 51506925 + sense 0.0
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+TSHZ2 20 51588946 52111869 + sense 0.0
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+AL050316.1 20 51679156 51679240 + sense 0.0
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+RN7SKP184 20 51714191 51714523 + sense 0.0
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+RP11-15M15.1 20 51785182 51796089 - sense 0.0
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+RP11-15M15.2 20 51812768 51825244 - sense 0.0
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+RP4-669H2.1 20 52014199 52029448 - sense 0.0
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+PPIAP10 20 52037738 52038195 + sense 0.0
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+RP5-823G15.5 20 52069597 52120853 - sense 0.0
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+AL354993.1 20 52105495 52106164 + sense 0.0
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+Y_RNA 20 52161154 52161264 + sense 0.0
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+RP4-724E16.2 20 52169309 52191847 + sense 0.0
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+ZNF217 20 52183604 52226446 - sense 0.0
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+AC005808.3 20 52224893 52251129 + sense 0.0
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+RNU7-14P 20 52285236 52285297 - sense 0.0
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+SUMO1P1 20 52491791 52492096 - sense 0.0
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+BCAS1 20 52553316 52687304 - sense 0.0
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+AC005220.3 20 52556699 52559047 + sense 0.0
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+CYP24A1 20 52769988 52790512 - sense 0.0
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+PFDN4 20 52824386 52844591 + sense 0.0
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+DOK5 20 53092136 53267710 + sense 0.0
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+RNU4ATAC7P 20 53476227 53476351 - sense 0.0
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+RPL12P4 20 53691155 53691685 + sense 0.0
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+RP5-1010E17.1 20 54039549 54084752 + sense 0.0
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+CBLN4 20 54572496 54580528 - sense 0.0
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+RNA5SP487 20 54780108 54780229 - sense 0.0
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+MC3R 20 54823788 54824871 + sense 0.0
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+RP11-380D15.2 20 54842928 54844287 + sense 0.0
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+RP11-380D15.3 20 54871023 54874216 - sense 0.0
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+FAM210B 20 54933971 54943719 + sense 0.0
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+AURKA 20 54944445 54967393 - sense 0.0
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+CSTF1 20 54967427 54979518 + sense 0.0
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+CASS4 20 54987168 55034396 + sense 0.0
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+RPL39P 20 55034484 55034639 - sense 0.0
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+AL121914.1 20 55035322 55035413 - sense 0.0
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+RTFDC1 20 55043647 55093943 + sense 0.0
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+snoU13 20 55050699 55050801 + sense 0.0
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+GCNT7 20 55066548 55100981 - sense 0.0
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+FAM209A 20 55092243 55101198 + sense 0.0
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+AL109806.1 20 55097413 55097855 + sense 0.0
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+FAM209B 20 55108302 55111576 + sense 0.0
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+RP5-843L14.1 20 55152619 55173677 + sense 0.0
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+RPS4XP3 20 55176757 55177169 + sense 0.0
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+U3 20 55182733 55182849 + sense 0.0
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+TFAP2C 20 55204358 55214339 + sense 0.0
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+RNU6-1146P 20 55242486 55242587 + sense 0.0
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+PTMAP6 20 55275893 55276570 - sense 0.0
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+AL133232.1 20 55293942 55294025 + sense 0.0
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+RP5-897D18.1 20 55305453 55306516 + sense 0.0
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+AL117380.2 20 55575143 55575213 + sense 0.0
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+AL117380.1 20 55629846 55629897 + sense 0.0
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+RP11-560A15.4 20 55680797 55682184 + sense 0.0
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+RP11-560A15.3 20 55689971 55697148 + sense 0.0
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+BMP7 20 55743804 55841685 - sense 0.0
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+RP4-813D12.2 20 55789928 55790922 + sense 0.0
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+Y_RNA 20 55886910 55887014 + sense 0.0
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+MIR4325 20 55896558 55896647 - sense 0.0
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+SPO11 20 55904815 55919050 + sense 0.0
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+RAE1 20 55926066 55954267 + sense 0.0
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+MTND1P9 20 55932482 55933425 - sense 0.0
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+MTRNR2L3 20 55933496 55934878 - sense 0.0
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+RP4-800J21.3 20 55959216 55968118 - sense 0.0
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+RBM38 20 55966463 55984389 + sense 0.0
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+HMGB1P1 20 56063448 56064083 - sense 0.0
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+CTCFL 20 56071035 56100708 - sense 0.0
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+PCK1 20 56136136 56141513 + sense 0.0
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+ZBP1 20 56178902 56195632 - sense 0.0
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+PMEPA1 20 56223448 56286592 - sense 0.0
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+MIR4532 20 56470450 56470500 + sense 0.0
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+AL354984.1 20 56493940 56494091 + sense 0.0
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+AL354984.2 20 56642512 56642663 + sense 0.0
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+RP13-379L11.3 20 56672323 56672647 + sense 0.0
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+C20orf85 20 56725960 56736206 + sense 0.0
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+ANKRD60 20 56793551 56803709 - sense 0.0
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+PPP4R1L 20 56806188 56884495 - sense 0.0
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+RAB22A 20 56884752 56942563 + sense 0.0
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+VAPB 20 56964178 57026157 + sense 0.0
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+APCDD1L 20 57034157 57090187 - sense 0.0
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+APCDD1L-AS1 20 57090435 57194944 + sense 0.0
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+AL050327.1 20 57180140 57180283 + sense 0.0
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+MGC4294 20 57209828 57210772 + sense 0.0
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+STX16 20 57226328 57254582 + sense 0.0
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+STX16-NPEPL1 20 57226490 57290466 + sense 0.0
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+NPEPL1 20 57264187 57294294 + sense 0.0
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+PIEZO1P2 20 57315588 57358877 - sense 0.0
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+MIR296 20 57392187 57392780 - sense 0.0
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+MIR298 20 57393281 57393368 - sense 0.0
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+GNAS-AS1 20 57393974 57425958 - sense 0.0
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+GNAS 20 57414773 57486247 + sense 0.0
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+NELFCD 20 57556263 57570188 + sense 0.0
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+CTSZ 20 57570240 57582302 - sense 0.0
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+TUBB1 20 57594309 57601709 + sense 0.0
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+ATP5E 20 57600522 57607437 - sense 0.0
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+SLMO2 20 57608200 57617964 - sense 0.0
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+MRPS16P2 20 57688279 57688686 + sense 0.0
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+ZNF831 20 57766075 57834168 + sense 0.0
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+EDN3 20 57875482 57901047 + sense 0.0
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+PIEZO1P1 20 58035674 58035892 - sense 0.0
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+RP11-164D18.2 20 58090246 58091094 + sense 0.0
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+PHACTR3 20 58152564 58422766 + sense 0.0
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+RNU7-141P 20 58427722 58427783 - sense 0.0
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+SYCP2 20 58438618 58508710 - sense 0.0
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+FAM217B 20 58508819 58523735 + sense 0.0
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+PPP1R3D 20 58511894 58515352 - sense 0.0
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+CDH26 20 58533471 58609066 + sense 0.0
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+C20orf197 20 58630980 58648008 + sense 0.0
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+RP5-1043L13.1 20 58662895 59102516 + sense 0.0
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+MIR646 20 58883532 58883625 + sense 0.0
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+MTCO2P1 20 58989454 58989930 - sense 0.0
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+MIR4533 20 59053169 59053239 + sense 0.0
+MIR4533 20 59053169 59053239 + antisense 0.0
+MIR548AG2 20 59139620 59139683 + sense 0.0
+MIR548AG2 20 59139620 59139683 + antisense 0.0
+RP11-151E14.1 20 59387060 59389267 - sense 0.0
+RP11-151E14.1 20 59387060 59389267 - antisense 0.0
+RP5-827L5.2 20 59652280 59652872 - sense 0.0
+RP5-827L5.2 20 59652280 59652872 - antisense 0.0
+RP5-827L5.1 20 59654196 59655235 + sense 0.0
+RP5-827L5.1 20 59654196 59655235 + antisense 0.0
+CDH4 20 59827482 60515673 + sense 0.0
+CDH4 20 59827482 60515673 + antisense 0.0
+RP11-429E11.3 20 60292562 60294804 - sense 0.0
+RP11-429E11.3 20 60292562 60294804 - antisense 0.0
+RP11-429E11.2 20 60313275 60330112 - sense 0.0
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+TAF4 20 60528525 60640866 - sense 0.0
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+MIR1257 20 60528602 60528718 - sense 0.0
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+hsa-mir-3195 20 60639858 60639941 + sense 0.0
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+LSM14B 20 60697517 60710434 + sense 0.0
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+PSMA7 20 60711791 60718496 - sense 0.0
+PSMA7 20 60711791 60718496 - antisense 0.0
+SS18L1 20 60718822 60757540 + sense 0.0
+SS18L1 20 60718822 60757540 + antisense 0.0
+MTG2 20 60758085 60778624 + sense 0.0
+MTG2 20 60758085 60778624 + antisense 0.0
+HRH3 20 60790026 60795323 - sense 0.0
+HRH3 20 60790026 60795323 - antisense 0.0
+OSBPL2 20 60813580 60871268 + sense 0.0
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+ADRM1 20 60877149 60883918 + sense 0.0
+ADRM1 20 60877149 60883918 + antisense 0.0
+RP11-157P1.4 20 60880488 60881381 - sense 0.0
+RP11-157P1.4 20 60880488 60881381 - antisense 0.0
+LAMA5 20 60883011 60942368 - sense 0.0
+LAMA5 20 60883011 60942368 - antisense 0.0
+MIR4758 20 60907543 60907613 - sense 0.0
+MIR4758 20 60907543 60907613 - antisense 0.0
+RP11-157P1.5 20 60928051 60931536 + sense 0.0
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+RPS21 20 60962172 60963576 + sense 0.0
+RPS21 20 60962172 60963576 + antisense 0.0
+CABLES2 20 60963688 60982341 - sense 0.0
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+RBBP8NL 20 60985293 61002589 - sense 0.0
+RBBP8NL 20 60985293 61002589 - antisense 0.0
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+RP5-908M14.5 20 61004604 61006568 + antisense 0.0
+GATA5 20 61038553 61051026 - sense 0.0
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+RP13-379O24.3 20 61052926 61053650 + sense 0.0
+RP13-379O24.3 20 61052926 61053650 + antisense 0.0
+RP13-379O24.2 20 61088965 61091152 - sense 0.0
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+C20orf166-AS1 20 61141550 61148733 - sense 0.0
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+C20orf166 20 61147660 61167971 + sense 0.0
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+MIR1-1 20 61151510 61151586 + sense 0.0
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+MIR133A2 20 61162119 61162220 + sense 0.0
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+RPL7P3 20 61169878 61170591 + sense 0.0
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+WI2-87327B8.1 20 61172797 61174714 + sense 0.0
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+SLCO4A1 20 61273797 61317137 + sense 0.0
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+RP11-93B14.5 20 61294371 61298076 - sense 0.0
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+LINC00686 20 61326376 61331832 - sense 0.0
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+NTSR1 20 61340189 61394123 + sense 0.0
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+RP11-93B14.4 20 61363918 61366699 - sense 0.0
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+LINC00659 20 61405480 61406764 - sense 0.0
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+OGFR-AS1 20 61431979 61436939 - sense 0.0
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+OGFR 20 61436187 61445352 + sense 0.0
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+COL9A3 20 61447596 61472511 + sense 0.0
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+DPH3P1 20 61476490 61477543 + sense 0.0
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+DIDO1 20 61509090 61569304 - sense 0.0
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+GID8 20 61569471 61576996 + sense 0.0
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+BHLHE23 20 61637331 61638387 - sense 0.0
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+RP11-305P22.9 20 61640735 61716423 + sense 0.0
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+LINC00029 20 61665569 61668380 - sense 0.0
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+LINC01056 20 61669363 61685215 + sense 0.0
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+HAR1B 20 61726845 61733671 - sense 0.0
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+HAR1A 20 61733483 61735738 + sense 0.0
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+RP5-963E22.5 20 61758847 61760811 - sense 0.0
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+RP5-963E22.4 20 61798149 61812255 - sense 0.0
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+MIR124-3 20 61809852 61809938 + sense 0.0
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+YTHDF1 20 61826781 61847586 - sense 0.0
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+BIRC7 20 61867235 61871859 + sense 0.0
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+MIR3196 20 61870131 61870194 + sense 0.0
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+NKAIN4 20 61872136 61904046 - sense 0.0
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+ARFGAP1 20 61904137 61921142 + sense 0.0
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+COL20A1 20 61924538 61966203 + sense 0.0
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+RNU6-994P 20 61968691 61968801 + sense 0.0
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+CHRNA4 20 61975420 62009753 - sense 0.0
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+KCNQ2 20 62037542 62103993 - sense 0.0
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+RP11-358D14.2 20 62079404 62080682 + sense 0.0
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+EEF1A2 20 62119366 62130505 - sense 0.0
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+RP4-697K14.3 20 62133640 62136464 + sense 0.0
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+PPDPF 20 62152077 62153559 + sense 0.0
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+PTK6 20 62159778 62168723 - sense 0.0
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+SRMS 20 62172163 62178857 - sense 0.0
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+C20orf195 20 62184373 62188061 + sense 0.0
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+HELZ2 20 62189439 62205592 - sense 0.0
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+GMEB2 20 62218955 62258394 - sense 0.0
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+CTD-3184A7.4 20 62258580 62260177 + sense 0.0
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+STMN3 20 62271061 62284780 - sense 0.0
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+RTEL1 20 62289163 62328416 + sense 0.0
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+RTEL1-TNFRSF6B 20 62290653 62330037 + sense 0.0
+RTEL1-TNFRSF6B 20 62290653 62330037 + antisense 0.0
+TNFRSF6B 20 62328021 62330037 + sense 0.0
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+ARFRP1 20 62329996 62339377 - sense 0.0
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+ZGPAT 20 62338817 62367494 + sense 0.0
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+LIME1 20 62366815 62370456 + sense 0.0
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+RP4-583P15.14 20 62369623 62371751 + sense 0.0
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+SLC2A4RG 20 62371214 62374858 + sense 0.0
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+ZBTB46 20 62375019 62462597 - sense 0.0
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+RP4-583P15.10 20 62376042 62377311 + sense 0.0
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+RP4-583P15.11 20 62439429 62447874 + sense 0.0
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+AL158091.1 20 62474779 62475273 - sense 0.0
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+ABHD16B 20 62492566 62494341 + sense 0.0
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+C20ORF135 20 62492879 62493217 - sense 0.0
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+TPD52L2 20 62496596 62522898 + sense 0.0
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+DNAJC5 20 62526518 62567384 + sense 0.0
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+RNU1-134P 20 62540308 62540472 + sense 0.0
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+MIR941-2 20 62550834 62550950 + sense 0.0
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+MIR941-1 20 62551365 62551481 + sense 0.0
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+UCKL1 20 62571186 62587769 - sense 0.0
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+MIR1914 20 62572818 62572897 - sense 0.0
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+MIR647 20 62573984 62574079 - sense 0.0
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+AL118506.1 20 62585007 62585495 + sense 0.0
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+SAMD10 20 62605466 62611361 - sense 0.0
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+PRPF6 20 62612488 62664453 + sense 0.0
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+LINC00176 20 62665697 62671315 + sense 0.0
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+SOX18 20 62679076 62680994 - sense 0.0
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+TCEA2 20 62681189 62703700 + sense 0.0
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+RP13-152O15.5 20 62688156 62688437 + sense 0.0
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+RGS19 20 62704534 62711323 - sense 0.0
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+OPRL1 20 62711526 62731996 + sense 0.0
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+C20orf201 20 62714733 62715712 - sense 0.0
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+NPBWR2 20 62737173 62738524 - sense 0.0
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+MYT1 20 62783144 62873604 + sense 0.0
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+PCMTD2 20 62887094 62926855 + sense 0.0
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+CICP4 20 62921540 62924351 - sense 0.0
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+LINC00266-1 20 62921738 62944485 + sense 0.0
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diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv
new file mode 100644
index 00000000000..2e35378df70
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv
@@ -0,0 +1,2637 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3
+gene_label contig start stop strand sense_antisense NA12878.star_counts
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+DEFB126 20 123010 126392 + sense 0.0
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+DEFB127 20 138111 139804 + sense 0.0
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+DEFB128 20 168494 170322 - sense 0.0
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+AL360078.1 20 172864 172940 - sense 0.0
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+DEFB132 20 238377 241737 + sense 0.0
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+RP5-1103G7.10 20 247827 249498 + sense 0.0
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+C20orf96 20 251504 271390 - sense 0.0
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+ZCCHC3 20 277737 280965 + sense 0.0
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+SOX12 20 306207 310865 + sense 0.0
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+NRSN2 20 327426 340304 + sense 0.0
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+TRIB3 20 361261 378203 + sense 0.0
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+RBCK1 20 388142 411610 + sense 0.0
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+TBC1D20 20 416124 443197 - sense 0.0
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+Y_RNA 20 431307 431406 + sense 0.0
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+CSNK2A1 20 459116 524465 - sense 0.0
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+TCF15 20 584441 591042 - sense 0.0
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+SCRT2 20 642240 656823 - sense 0.0
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+FAM110A 20 814358 838106 + sense 0.0
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+RPS10L 20 820090 820620 - sense 0.0
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+ANGPT4 20 853296 896977 - sense 0.0
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+PSMF1 20 1093906 1160596 + sense 0.0
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+ACTG1P3 20 1141228 1142341 + sense 0.0
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+TMEM74B 20 1161205 1166059 - sense 0.0
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+RAD21L1 20 1206700 1277065 + sense 0.0
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+SNPH 20 1246960 1289972 + sense 0.0
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+NSFL1C 20 1422807 1454487 - sense 0.0
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+SIRPB2 20 1451386 1472233 - sense 0.0
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+AL109658.1 20 1469195 1469292 + sense 0.0
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+RNU6-917P 20 1509702 1509805 - sense 0.0
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+SIRPD 20 1514897 1539489 - sense 0.0
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+SIRPG 20 1609798 1638425 - sense 0.0
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+SIRPB3P 20 1645929 1688846 - sense 0.0
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+RN7SL561P 20 1647006 1647284 + sense 0.0
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+RP4-673D20.6 20 1737402 1739586 - sense 0.0
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+SIRPA 20 1875154 1920543 + sense 0.0
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+RP4-684O24.5 20 1927892 1988163 + sense 0.0
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+PDYN 20 1959403 1974732 - sense 0.0
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+RPL7P2 20 2056201 2056468 + sense 0.0
+RPL7P2 20 2056201 2056468 + antisense 0.0
+STK35 20 2082257 2157684 + sense 0.0
+STK35 20 2082257 2157684 + antisense 0.0
+AL121899.1 20 2137858 2137927 - sense 0.0
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+RP11-128M1.1 20 2187863 2193797 + sense 0.0
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+TGM3 20 2276647 2321724 + sense 0.0
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+TGM6 20 2361554 2413399 + sense 0.0
+TGM6 20 2361554 2413399 + antisense 0.0
+Y_RNA 20 2433656 2433763 - sense 0.0
+Y_RNA 20 2433656 2433763 - antisense 0.0
+SNRPB 20 2442280 2451499 - sense 26.0
+SNRPB 20 2442280 2451499 - antisense 430.5
+SNORD119 20 2443608 2443683 - sense 0.0
+SNORD119 20 2443608 2443683 - antisense 0.0
+RP4-734P14.4 20 2447858 2489553 - sense 26.0
+RP4-734P14.4 20 2447858 2489553 - antisense 425.5
+ZNF343 20 2462463 2505348 - sense 10.0
+ZNF343 20 2462463 2505348 - antisense 266.0
+TMC2 20 2517253 2622430 + sense 3.0
+TMC2 20 2517253 2622430 + antisense 0.0
+NOP56 20 2632791 2639039 + sense 111.5
+NOP56 20 2632791 2639039 + antisense 1981.67
+MIR1292 20 2633423 2633488 + sense 2.5
+MIR1292 20 2633423 2633488 + antisense 49.5
+SNORD110 20 2634858 2634932 + sense 0.0
+SNORD110 20 2634858 2634932 + antisense 24.5
+SNORA51 20 2635713 2635844 + sense 1.0
+SNORA51 20 2635713 2635844 + antisense 14.5
+SNORD86 20 2636743 2636828 + sense 6.5
+SNORD86 20 2636743 2636828 + antisense 96.33
+SNORD56 20 2637270 2637340 + sense 0.5
+SNORD56 20 2637270 2637340 + antisense 12.33
+SNORD57 20 2637585 2637656 + sense 2.0
+SNORD57 20 2637585 2637656 + antisense 22.17
+IDH3B 20 2639041 2644865 - sense 0.0
+IDH3B 20 2639041 2644865 - antisense 0.0
+RP4-686C3.7 20 2644998 2646520 + sense 0.0
+RP4-686C3.7 20 2644998 2646520 + antisense 0.0
+EBF4 20 2673524 2740753 + sense 0.0
+EBF4 20 2673524 2740753 + antisense 0.0
+AL035460.1 20 2677351 2677781 + sense 0.0
+AL035460.1 20 2677351 2677781 + antisense 0.0
+RPL19P1 20 2761260 2761687 + sense 0.0
+RPL19P1 20 2761260 2761687 + antisense 0.0
+CPXM1 20 2774715 2781283 - sense 0.0
+CPXM1 20 2774715 2781283 - antisense 0.0
+TMEM239 20 2795614 2798712 + sense 0.0
+TMEM239 20 2795614 2798712 + antisense 0.0
+TMEM239 20 2795614 2800930 + sense 0.0
+TMEM239 20 2795614 2800930 + antisense 0.0
+C20orf141 20 2795633 2796479 + sense 0.0
+C20orf141 20 2795633 2796479 + antisense 0.0
+PCED1A 20 2815960 2821836 - sense 0.0
+PCED1A 20 2815960 2821836 - antisense 0.0
+VPS16 20 2821349 2847378 + sense 0.0
+VPS16 20 2821349 2847378 + antisense 0.0
+PTPRA 20 2844830 3019722 + sense 0.0
+PTPRA 20 2844830 3019722 + antisense 0.0
+GNRH2 20 3024268 3026393 + sense 0.0
+GNRH2 20 3024268 3026393 + antisense 0.0
+MRPS26 20 3026591 3028900 + sense 0.0
+MRPS26 20 3026591 3028900 + antisense 0.0
+OXT 20 3052266 3053163 + sense 0.0
+OXT 20 3052266 3053163 + antisense 0.0
+AVP 20 3063202 3065370 - sense 0.0
+AVP 20 3063202 3065370 - antisense 0.0
+RN7SL555P 20 3074861 3075153 + sense 0.0
+RN7SL555P 20 3074861 3075153 + antisense 0.0
+UBOX5-AS1 20 3087559 3131513 + sense 0.0
+UBOX5-AS1 20 3087559 3131513 + antisense 0.0
+UBOX5 20 3088219 3140842 - sense 0.0
+UBOX5 20 3088219 3140842 - antisense 0.0
+FASTKD5 20 3127165 3140543 - sense 0.0
+FASTKD5 20 3127165 3140543 - antisense 0.0
+LZTS3 20 3143263 3154192 - sense 0.0
+LZTS3 20 3143263 3154192 - antisense 0.0
+DDRGK1 20 3170996 3185331 - sense 0.0
+DDRGK1 20 3170996 3185331 - antisense 0.0
+ITPA 20 3189514 3204516 + sense 0.0
+ITPA 20 3189514 3204516 + antisense 0.0
+SLC4A11 20 3208063 3219836 - sense 0.0
+SLC4A11 20 3208063 3219836 - antisense 0.0
+C20orf194 20 3229951 3388272 - sense 0.0
+C20orf194 20 3229951 3388272 - antisense 0.0
+RN7SL839P 20 3261065 3261355 + sense 0.0
+RN7SL839P 20 3261065 3261355 + antisense 0.0
+RNU6-1019P 20 3340683 3340789 + sense 0.0
+RNU6-1019P 20 3340683 3340789 + antisense 0.0
+UBE2V1P1 20 3342527 3342971 - sense 0.0
+UBE2V1P1 20 3342527 3342971 - antisense 0.0
+U3 20 3364876 3365086 + sense 0.0
+U3 20 3364876 3365086 + antisense 0.0
+AL117334.1 20 3384863 3384932 + sense 0.0
+AL117334.1 20 3384863 3384932 + antisense 0.0
+RP11-137F15.1 20 3445824 3446091 - sense 0.0
+RP11-137F15.1 20 3445824 3446091 - antisense 0.0
+ATRN 20 3451687 3631769 + sense 0.0
+ATRN 20 3451687 3631769 + antisense 0.0
+SF3A3P1 20 3470176 3471652 - sense 0.0
+SF3A3P1 20 3470176 3471652 - antisense 0.0
+AL109805.1 20 3487654 3487759 + sense 0.0
+AL109805.1 20 3487654 3487759 + antisense 0.0
+GFRA4 20 3639939 3644046 - sense 0.0
+GFRA4 20 3639939 3644046 - antisense 0.0
+ADAM33 20 3648612 3662893 - sense 0.0
+ADAM33 20 3648612 3662893 - antisense 0.0
+SIGLEC1 20 3667617 3687775 - sense 0.0
+SIGLEC1 20 3667617 3687775 - antisense 0.0
+HSPA12B 20 3713314 3733758 + sense 0.0
+HSPA12B 20 3713314 3733758 + antisense 0.0
+C20orf27 20 3734155 3749034 - sense 0.0
+C20orf27 20 3734155 3749034 - antisense 0.0
+SPEF1 20 3758151 3762095 - sense 0.0
+SPEF1 20 3758151 3762095 - antisense 0.0
+CENPB 20 3764498 3767337 - sense 0.0
+CENPB 20 3764498 3767337 - antisense 0.0
+CDC25B 20 3767578 3786762 + sense 0.0
+CDC25B 20 3767578 3786762 + antisense 0.0
+AP5S1 20 3801178 3805949 + sense 0.0
+AP5S1 20 3801178 3805949 + antisense 0.0
+MAVS 20 3827487 3849280 + sense 0.0
+MAVS 20 3827487 3849280 + antisense 0.0
+RP11-119B16.2 20 3868886 3869515 - sense 0.0
+RP11-119B16.2 20 3868886 3869515 - antisense 0.0
+PANK2 20 3869486 3907605 + sense 0.0
+PANK2 20 3869486 3907605 + antisense 0.0
+MIR103A2 20 3898141 3898218 + sense 0.0
+MIR103A2 20 3898141 3898218 + antisense 0.0
+RNF24 20 3907956 3996229 - sense 0.0
+RNF24 20 3907956 3996229 - antisense 0.0
+FTLP3 20 4004552 4005091 + sense 0.0
+FTLP3 20 4004552 4005091 + antisense 0.0
+RPL21P2 20 4040280 4040760 - sense 0.0
+RPL21P2 20 4040280 4040760 - antisense 0.0
+RP11-352D3.2 20 4050799 4055812 - sense 0.0
+RP11-352D3.2 20 4050799 4055812 - antisense 0.0
+SMOX 20 4101627 4168394 + sense 0.0
+SMOX 20 4101627 4168394 + antisense 0.0
+RP4-779E11.3 20 4173712 4176590 + sense 0.0
+RP4-779E11.3 20 4173712 4176590 + antisense 0.0
+ADRA1D 20 4201329 4229721 - sense 0.0
+ADRA1D 20 4201329 4229721 - antisense 0.0
+RP11-307O10.1 20 4411808 4412320 - sense 0.0
+RP11-307O10.1 20 4411808 4412320 - antisense 0.0
+RP5-1164C1.2 20 4456285 4505846 + sense 0.0
+RP5-1164C1.2 20 4456285 4505846 + antisense 0.0
+RPL7AL2 20 4571639 4571946 - sense 0.0
+RPL7AL2 20 4571639 4571946 - antisense 0.0
+RPS4XP2 20 4610073 4610865 - sense 0.0
+RPS4XP2 20 4610073 4610865 - antisense 0.0
+PRNP 20 4666882 4682236 + sense 0.0
+PRNP 20 4666882 4682236 + antisense 0.0
+PRND 20 4702556 4709106 + sense 0.0
+PRND 20 4702556 4709106 + antisense 0.0
+PRNT 20 4711928 4721314 - sense 0.0
+PRNT 20 4711928 4721314 - antisense 0.0
+RP5-1068H6.1 20 4716315 4717319 - sense 0.0
+RP5-1068H6.1 20 4716315 4717319 - antisense 0.0
+RASSF2 20 4760669 4804291 - sense 0.0
+RASSF2 20 4760669 4804291 - antisense 0.0
+SLC23A2 20 4833002 4990939 - sense 0.0
+SLC23A2 20 4833002 4990939 - antisense 0.0
+SNORA31 20 4849630 4849764 + sense 0.0
+SNORA31 20 4849630 4849764 + antisense 0.0
+snoU13 20 4863030 4863122 + sense 0.0
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+RP5-1116H23.1 20 4994166 4994370 - sense 0.0
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+RN7SL514P 20 5006365 5006628 + sense 0.0
+RN7SL514P 20 5006365 5006628 + antisense 0.0
+RNA5SP474 20 5079033 5079122 - sense 0.0
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+TMEM230 20 5080486 5093749 - sense 0.0
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+Y_RNA 20 5094639 5094729 - sense 0.0
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+PCNA 20 5095599 5107272 - sense 0.0
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+SNORA26 20 5102063 5102185 - sense 0.0
+SNORA26 20 5102063 5102185 - antisense 0.0
+CDS2 20 5107432 5178533 + sense 0.0
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+UBE2D3P1 20 5273034 5273477 - sense 0.0
+UBE2D3P1 20 5273034 5273477 - antisense 0.0
+PROKR2 20 5282317 5297378 - sense 0.0
+PROKR2 20 5282317 5297378 - antisense 0.0
+RNA5-8SP7 20 5326652 5326806 - sense 0.0
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+LINC00658 20 5407541 5451740 - sense 0.0
+LINC00658 20 5407541 5451740 - antisense 0.0
+RP5-828H9.1 20 5451853 5455828 + sense 0.0
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+LINC00654 20 5476713 5485259 - sense 0.0
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+RP5-1022P6.7 20 5479762 5483527 + sense 0.0
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+RP5-1022P6.4 20 5488521 5490648 - sense 0.0
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+RPS18P1 20 5513524 5513981 + sense 0.0
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+RP5-1022P6.5 20 5514274 5516535 + sense 0.0
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+GPCPD1 20 5525085 5591672 - sense 0.0
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+RP5-1022P6.3 20 5529486 5530127 + sense 0.0
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+C20orf196 20 5731039 5844558 + sense 0.0
+C20orf196 20 5731039 5844558 + antisense 0.0
+RNU1-55P 20 5870701 5870858 + sense 0.0
+RNU1-55P 20 5870701 5870858 + antisense 0.0
+CHGB 20 5892076 5906007 + sense 0.0
+CHGB 20 5892076 5906007 + antisense 0.0
+RP5-967N21.2 20 5908731 5909964 - sense 0.0
+RP5-967N21.2 20 5908731 5909964 - antisense 0.0
+TRMT6 20 5917881 5931182 - sense 0.0
+TRMT6 20 5917881 5931182 - antisense 0.0
+MCM8 20 5931298 5975852 + sense 0.0
+MCM8 20 5931298 5975852 + antisense 0.0
+Y_RNA 20 5945184 5945296 + sense 0.0
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+RP5-967N21.7 20 5945826 5946157 + sense 0.0
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+RN7SL498P 20 5982379 5982674 + sense 0.0
+RN7SL498P 20 5982379 5982674 + antisense 0.0
+CRLS1 20 5986736 6020699 + sense 0.0
+CRLS1 20 5986736 6020699 + antisense 0.0
+LRRN4 20 6021424 6034695 - sense 0.0
+LRRN4 20 6021424 6034695 - antisense 0.0
+FERMT1 20 6055492 6104191 - sense 0.0
+FERMT1 20 6055492 6104191 - antisense 0.0
+TARDBPP1 20 6181636 6182838 - sense 0.0
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+RP4-775C13.1 20 6194346 6196028 + sense 0.0
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+RP4-775C13.2 20 6199846 6200090 + sense 0.0
+RP4-775C13.2 20 6199846 6200090 + antisense 0.0
+AL109618.1 20 6209441 6209595 - sense 0.0
+AL109618.1 20 6209441 6209595 - antisense 0.0
+CASC20 20 6427370 6509106 + sense 0.0
+CASC20 20 6427370 6509106 + antisense 0.0
+RP5-859D4.3 20 6711905 6716783 - sense 0.0
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+BMP2 20 6748311 6760927 + sense 0.0
+BMP2 20 6748311 6760927 + antisense 0.0
+snoR26 20 6841661 6841755 + sense 0.0
+snoR26 20 6841661 6841755 + antisense 0.0
+RP4-764O22.1 20 7050261 7127303 + sense 0.0
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+RP4-764O22.2 20 7127114 7234849 - sense 0.0
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+RP11-19D2.1 20 7237227 7238861 - sense 0.0
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+RP11-19D2.2 20 7282703 7288079 - sense 0.0
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+RP5-988G17.1 20 7328114 7348279 + sense 0.0
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+RN7SL547P 20 7614211 7614498 - sense 0.0
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+AL031653.1 20 7677533 7677624 - sense 0.0
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+RP5-836E8.1 20 7812445 7812969 - sense 0.0
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+HAO1 20 7863628 7921121 - sense 0.0
+HAO1 20 7863628 7921121 - antisense 0.0
+TMX4 20 7957995 8000476 - sense 0.0
+TMX4 20 7957995 8000476 - antisense 0.0
+RP5-971N18.3 20 7999870 8024159 + sense 0.0
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+PHKBP1 20 8078471 8080421 - sense 0.0
+PHKBP1 20 8078471 8080421 - antisense 0.0
+PLCB1 20 8112824 8949003 + sense 0.0
+PLCB1 20 8112824 8949003 + antisense 0.0
+PLCB1-IT1 20 8229351 8237564 + sense 0.0
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+AL031655.1 20 8589827 8589912 + sense 0.0
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+AL031655.2 20 8590801 8590887 - sense 0.0
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+RNU105B 20 8811833 8812040 + sense 0.0
+RNU105B 20 8811833 8812040 + antisense 0.0
+RP5-859I17.2 20 8910542 8910685 - sense 0.0
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+AL121898.1 20 9047481 9047555 - sense 0.0
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+PLCB4 20 9049410 9461889 + sense 0.0
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+RP5-1119D9.4 20 9485827 9495645 - sense 0.0
+RP5-1119D9.4 20 9485827 9495645 - antisense 0.0
+LAMP5 20 9495005 9511171 + sense 0.0
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+PAK7 20 9518036 9819689 - sense 0.0
+PAK7 20 9518036 9819689 - antisense 0.0
+RP5-986I17.2 20 9556255 9558336 + sense 0.0
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+RP5-839B4.8 20 9966736 9987764 + sense 0.0
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+ANKEF1 20 9966774 10037410 + sense 0.0
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+SNAP25-AS1 20 10002620 10349424 - sense 0.0
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+AL109754.1 20 10036968 10037063 + sense 0.0
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+RP11-416N4.4 20 10154168 10177638 + sense 0.0
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+RP11-416N4.1 20 10160883 10166423 + sense 0.0
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+SNAP25 20 10199478 10288066 + sense 0.0
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+HIGD1AP15 20 10315067 10315346 + sense 0.0
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+RPL23AP6 20 10329805 10330276 - sense 0.0
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+AL023913.1 20 10342736 10342878 - sense 0.0
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+SDAD1P2 20 10366427 10368454 + sense 0.0
+SDAD1P2 20 10366427 10368454 + antisense 0.0
+MKKS 20 10381657 10414870 - sense 0.0
+MKKS 20 10381657 10414870 - antisense 0.0
+SLX4IP 20 10415951 10617477 + sense 0.0
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+RP5-1099D15.1 20 10593509 10594877 - sense 0.0
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+JAG1 20 10618332 10654694 - sense 0.0
+JAG1 20 10618332 10654694 - antisense 0.0
+JAG1 20 10625847 10627014 - sense 0.0
+JAG1 20 10625847 10627014 - antisense 0.0
+RP11-103J8.1 20 10653576 10975572 + sense 0.0
+RP11-103J8.1 20 10653576 10975572 + antisense 0.0
+RP1-278O22.1 20 10733738 10734614 + sense 0.0
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+RP1-278O22.2 20 10733926 10745934 - sense 0.0
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+RP4-697P8.3 20 10855981 10889920 - sense 0.0
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+FAT1P1 20 10869230 10869736 - sense 0.0
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+RP11-103J8.2 20 10981952 10982411 + sense 0.0
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+C20orf187 20 11008408 11010014 + sense 0.0
+C20orf187 20 11008408 11010014 + antisense 0.0
+RP4-734C18.1 20 11214818 11282173 - sense 0.0
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+RPS11P1 20 11326031 11326503 - sense 0.0
+RPS11P1 20 11326031 11326503 - antisense 0.0
+RP5-1128N12.2 20 11589084 11589696 - sense 0.0
+RP5-1128N12.2 20 11589084 11589696 - antisense 0.0
+PGAM3P 20 11601699 11602125 + sense 0.0
+PGAM3P 20 11601699 11602125 + antisense 0.0
+RP11-268G13.1 20 11665792 11667971 - sense 0.0
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+LINC00687 20 11781111 11851363 - sense 0.0
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+AL080274.1 20 11790813 11791095 - sense 0.0
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+RN7SKP111 20 11799469 11799739 - sense 0.0
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+RP5-1012F16.2 20 11819003 11819222 + sense 0.0
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+BTBD3 20 11871371 11907257 + sense 0.0
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+RP4-742J24.2 20 11890052 11899325 - sense 0.0
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+RP4-796I8.1 20 12224543 12224944 - sense 0.0
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+RP11-102J14.1 20 12286261 12297133 - sense 0.0
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+PA2G4P2 20 12360704 12361903 + sense 0.0
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+RP5-1069C8.2 20 12845850 12933167 - sense 0.0
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+RP5-1069C8.3 20 12915525 12916431 - sense 0.0
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+RP11-157E14.1 20 12930986 12932275 + sense 0.0
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+SPTLC3 20 12989627 13147411 + sense 0.0
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+RP4-718P11.1 20 13054315 13054960 - sense 0.0
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+ISM1 20 13202418 13281298 + sense 0.0
+ISM1 20 13202418 13281298 + antisense 0.0
+ISM1-AS1 20 13218448 13220321 - sense 0.0
+ISM1-AS1 20 13218448 13220321 - antisense 0.0
+RP5-1077I2.3 20 13224711 13226016 - sense 0.0
+RP5-1077I2.3 20 13224711 13226016 - antisense 0.0
+TASP1 20 13246709 13619587 - sense 0.0
+TASP1 20 13246709 13619587 - antisense 0.0
+GAPDHP2 20 13373324 13374321 + sense 0.0
+GAPDHP2 20 13373324 13374321 + antisense 0.0
+ESF1 20 13694969 13765532 - sense 0.0
+ESF1 20 13694969 13765532 - antisense 0.0
+NDUFAF5 20 13765596 13799067 + sense 0.0
+NDUFAF5 20 13765596 13799067 + antisense 0.0
+SEL1L2 20 13829893 13977089 - sense 0.0
+SEL1L2 20 13829893 13977089 - antisense 0.0
+AL117333.1 20 13936410 13936503 - sense 0.0
+AL117333.1 20 13936410 13936503 - antisense 0.0
+RNU6-278P 20 13953962 13954070 - sense 0.0
+RNU6-278P 20 13953962 13954070 - antisense 0.0
+MACROD2 20 13976015 16033842 + sense 0.0
+MACROD2 20 13976015 16033842 + antisense 0.0
+RPS3P1 20 13984154 13984345 + sense 0.0
+RPS3P1 20 13984154 13984345 + antisense 0.0
+AIMP1P1 20 14108046 14108982 + sense 0.0
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+RN7SL864P 20 14203687 14203976 + sense 0.0
+RN7SL864P 20 14203687 14203976 + antisense 0.0
+FLRT3 20 14303634 14318262 - sense 0.0
+FLRT3 20 14303634 14318262 - antisense 0.0
+RNU6-228P 20 14332966 14333071 + sense 0.0
+RNU6-228P 20 14332966 14333071 + antisense 0.0
+RNF11B 20 14527830 14528269 - sense 0.0
+RNF11B 20 14527830 14528269 - antisense 0.0
+MACROD2-IT1 20 14535030 14617170 + sense 0.0
+MACROD2-IT1 20 14535030 14617170 + antisense 0.0
+RPS10P2 20 14738209 14738702 + sense 0.0
+RPS10P2 20 14738209 14738702 + antisense 0.0
+MACROD2-AS1 20 14864899 14910161 - sense 0.0
+MACROD2-AS1 20 14864899 14910161 - antisense 0.0
+RP5-974N19.1 20 14914489 14916009 - sense 0.0
+RP5-974N19.1 20 14914489 14916009 - antisense 0.0
+RNU6-1159P 20 15002199 15002305 - sense 0.0
+RNU6-1159P 20 15002199 15002305 - antisense 0.0
+RNU6-115P 20 15003498 15003604 + sense 0.0
+RNU6-115P 20 15003498 15003604 + antisense 0.0
+RNA5SP475 20 15261410 15261519 - sense 0.0
+RNA5SP475 20 15261410 15261519 - antisense 0.0
+RP11-388K2.1 20 15532802 15533530 - sense 0.0
+RP11-388K2.1 20 15532802 15533530 - antisense 0.0
+AL121584.1 20 15539025 15539113 - sense 0.0
+AL121584.1 20 15539025 15539113 - antisense 0.0
+ENSAP1 20 15600139 15600464 - sense 0.0
+ENSAP1 20 15600139 15600464 - antisense 0.0
+PPIAP17 20 16204395 16205180 - sense 0.0
+PPIAP17 20 16204395 16205180 - antisense 0.0
+KIF16B 20 16252749 16554078 - sense 0.0
+KIF16B 20 16252749 16554078 - antisense 0.0
+AL118509.1 20 16390942 16391036 - sense 0.0
+AL118509.1 20 16390942 16391036 - antisense 0.0
+RPLP0P1 20 16566978 16567338 - sense 0.0
+RPLP0P1 20 16566978 16567338 - antisense 0.0
+Y_RNA 20 16651286 16651387 - sense 0.0
+Y_RNA 20 16651286 16651387 - antisense 0.0
+RPL7AL3 20 16664753 16665049 - sense 0.0
+RPL7AL3 20 16664753 16665049 - antisense 0.0
+RP4-705D16.3 20 16695489 16711593 - sense 0.0
+RP4-705D16.3 20 16695489 16711593 - antisense 0.0
+SNRPB2 20 16710606 16722421 + sense 0.0
+SNRPB2 20 16710606 16722421 + antisense 0.0
+OTOR 20 16729003 16750707 + sense 0.0
+OTOR 20 16729003 16750707 + antisense 0.0
+RP5-1195D24.1 20 16838607 16844793 - sense 0.0
+RP5-1195D24.1 20 16838607 16844793 - antisense 0.0
+U3 20 16963477 16963678 - sense 0.0
+U3 20 16963477 16963678 - antisense 0.0
+RNU6-27P 20 17168155 17168261 + sense 0.0
+RNU6-27P 20 17168155 17168261 + antisense 0.0
+RP1-298M8.1 20 17168779 17168989 + sense 0.0
+RP1-298M8.1 20 17168779 17168989 + antisense 0.0
+RNU1-131P 20 17189705 17189865 + sense 0.0
+RNU1-131P 20 17189705 17189865 + antisense 0.0
+PCSK2 20 17206752 17465223 + sense 0.0
+PCSK2 20 17206752 17465223 + antisense 0.0
+DYNLT3P1 20 17459730 17460076 - sense 0.0
+DYNLT3P1 20 17459730 17460076 - antisense 0.0
+BFSP1 20 17474550 17549865 - sense 0.0
+BFSP1 20 17474550 17549865 - antisense 0.0
+RPS27AP2 20 17497488 17497952 + sense 0.0
+RPS27AP2 20 17497488 17497952 + antisense 0.0
+DSTN 20 17550508 17590564 + sense 0.0
+DSTN 20 17550508 17590564 + antisense 0.0
+RN7SKP69 20 17556851 17557155 - sense 0.0
+RN7SKP69 20 17556851 17557155 - antisense 0.0
+RP11-462D18.2 20 17579900 17580452 - sense 0.0
+RP11-462D18.2 20 17579900 17580452 - antisense 0.0
+RRBP1 20 17594323 17662940 - sense 0.0
+RRBP1 20 17594323 17662940 - antisense 0.0
+BANF2 20 17674317 17716516 + sense 0.0
+BANF2 20 17674317 17716516 + antisense 0.0
+AL035045.1 20 17823227 17823372 + sense 0.0
+AL035045.1 20 17823227 17823372 + antisense 0.0
+RP5-905G11.3 20 17868007 17868804 - sense 0.0
+RP5-905G11.3 20 17868007 17868804 - antisense 0.0
+RNU6-192P 20 17884406 17884505 + sense 0.0
+RNU6-192P 20 17884406 17884505 + antisense 0.0
+SNX5 20 17922241 17949623 - sense 0.0
+SNX5 20 17922241 17949623 - antisense 0.0
+OVOL2 20 17937623 18039832 - sense 0.0
+OVOL2 20 17937623 18039832 - antisense 0.0
+SNORD17 20 17943353 17943589 - sense 0.0
+SNORD17 20 17943353 17943589 - antisense 0.0
+MGME1 20 17949556 17971765 + sense 0.0
+MGME1 20 17949556 17971765 + antisense 0.0
+PTMAP3 20 17992599 17992928 + sense 0.0
+PTMAP3 20 17992599 17992928 + antisense 0.0
+RP4-726N1.2 20 18040137 18051652 + sense 0.0
+RP4-726N1.2 20 18040137 18051652 + antisense 0.0
+RPL15P1 20 18070760 18071359 - sense 0.0
+RPL15P1 20 18070760 18071359 - antisense 0.0
+RNU7-137P 20 18076215 18076276 - sense 0.0
+RNU7-137P 20 18076215 18076276 - antisense 0.0
+Y_RNA 20 18094111 18094223 - sense 0.0
+Y_RNA 20 18094111 18094223 - antisense 0.0
+PET117 20 18118517 18123813 + sense 0.0
+PET117 20 18118517 18123813 + antisense 0.0
+CSRP2BP 20 18118762 18169031 + sense 0.0
+CSRP2BP 20 18118762 18169031 + antisense 0.0
+AL050321.1 20 18150549 18150633 - sense 0.0
+AL050321.1 20 18150549 18150633 - antisense 0.0
+RP4-717M23.2 20 18200757 18201156 + sense 0.0
+RP4-717M23.2 20 18200757 18201156 + antisense 0.0
+RN7SL14P 20 18239200 18239495 - sense 0.0
+RN7SL14P 20 18239200 18239495 - antisense 0.0
+RNU2-56P 20 18246334 18246523 - sense 0.0
+RNU2-56P 20 18246334 18246523 - antisense 0.0
+ZNF133 20 18269121 18297640 + sense 0.0
+ZNF133 20 18269121 18297640 + antisense 0.0
+RN7SKP74 20 18275787 18276095 - sense 0.0
+RN7SKP74 20 18275787 18276095 - antisense 0.0
+RP4-568F9.3 20 18294409 18295755 - sense 0.0
+RP4-568F9.3 20 18294409 18295755 - antisense 0.0
+RP4-568F9.6 20 18303196 18339944 - sense 0.0
+RP4-568F9.6 20 18303196 18339944 - antisense 0.0
+RNY4P11 20 18309650 18309746 + sense 0.0
+RNY4P11 20 18309650 18309746 + antisense 0.0
+LINC00851 20 18359693 18362128 + sense 0.0
+LINC00851 20 18359693 18362128 + antisense 0.0
+DZANK1 20 18364011 18447925 - sense 0.0
+DZANK1 20 18364011 18447925 - antisense 0.0
+GCNT1P1 20 18400804 18402098 - sense 0.0
+GCNT1P1 20 18400804 18402098 - antisense 0.0
+RNA5SP476 20 18414486 18414588 + sense 0.0
+RNA5SP476 20 18414486 18414588 + antisense 0.0
+POLR3F 20 18447771 18465287 + sense 0.0
+POLR3F 20 18447771 18465287 + antisense 0.0
+MIR3192 20 18451259 18451335 + sense 0.0
+MIR3192 20 18451259 18451335 + antisense 0.0
+RPL21P3 20 18465909 18466696 + sense 0.0
+RPL21P3 20 18465909 18466696 + antisense 0.0
+RBBP9 20 18467184 18477887 - sense 0.0
+RBBP9 20 18467184 18477887 - antisense 0.0
+RPS19P1 20 18485277 18485710 + sense 0.0
+RPS19P1 20 18485277 18485710 + antisense 0.0
+SEC23B 20 18488137 18542059 + sense 0.0
+SEC23B 20 18488137 18542059 + antisense 0.0
+AL121893.1 20 18526352 18526428 - sense 0.0
+AL121893.1 20 18526352 18526428 - antisense 0.0
+LINC00493 20 18548064 18550207 + sense 0.0
+LINC00493 20 18548064 18550207 + antisense 0.0
+DTD1 20 18568537 18744561 + sense 0.0
+DTD1 20 18568537 18744561 + antisense 0.0
+RN7SL638P 20 18572974 18573261 + sense 0.0
+RN7SL638P 20 18572974 18573261 + antisense 0.0
+RNU6ATAC34P 20 18591691 18591811 - sense 0.0
+RNU6ATAC34P 20 18591691 18591811 - antisense 0.0
+DUXAP7 20 18623426 18624278 - sense 0.0
+DUXAP7 20 18623426 18624278 - antisense 0.0
+RP11-379J5.5 20 18655039 18679353 - sense 0.0
+RP11-379J5.5 20 18655039 18679353 - antisense 0.0
+EEF1A1P34 20 18763068 18764334 - sense 0.0
+EEF1A1P34 20 18763068 18764334 - antisense 0.0
+LINC00652 20 18768295 18774979 - sense 0.0
+LINC00652 20 18768295 18774979 - antisense 0.0
+RP5-1068E13.7 20 18775173 18776711 + sense 0.0
+RP5-1068E13.7 20 18775173 18776711 + antisense 0.0
+C20orf78 20 18790372 18810797 - sense 0.0
+C20orf78 20 18790372 18810797 - antisense 0.0
+SCP2D1 20 18794370 18795033 + sense 0.0
+SCP2D1 20 18794370 18795033 + antisense 0.0
+AL136090.1 20 19106429 19106551 + sense 0.0
+AL136090.1 20 19106429 19106551 + antisense 0.0
+SLC24A3 20 19193290 19703581 + sense 0.0
+SLC24A3 20 19193290 19703581 + antisense 0.0
+RP11-97N19.2 20 19193496 19194121 - sense 0.0
+RP11-97N19.2 20 19193496 19194121 - antisense 0.0
+RP5-1027G4.3 20 19222946 19265240 - sense 0.0
+RP5-1027G4.3 20 19222946 19265240 - antisense 0.0
+AL049647.1 20 19321940 19322016 + sense 0.0
+AL049647.1 20 19321940 19322016 + antisense 0.0
+AL139429.1 20 19570741 19570831 - sense 0.0
+AL139429.1 20 19570741 19570831 - antisense 0.0
+RP4-718D20.3 20 19673853 19678220 - sense 0.0
+RP4-718D20.3 20 19673853 19678220 - antisense 0.0
+AL121761.1 20 19715460 19715553 - sense 0.0
+AL121761.1 20 19715460 19715553 - antisense 0.0
+AL121761.2 20 19738296 19738679 - sense 0.0
+AL121761.2 20 19738296 19738679 - antisense 0.0
+RP1-122P22.2 20 19738352 19790319 + sense 0.0
+RP1-122P22.2 20 19738352 19790319 + antisense 0.0
+RPL12L3 20 19804087 19804587 - sense 0.0
+RPL12L3 20 19804087 19804587 - antisense 0.0
+RIN2 20 19867165 19983101 + sense 0.0
+RIN2 20 19867165 19983101 + antisense 0.0
+NAA20 20 19997760 20014299 + sense 0.0
+NAA20 20 19997760 20014299 + antisense 0.0
+CRNKL1 20 20015012 20036690 - sense 0.0
+CRNKL1 20 20015012 20036690 - antisense 0.0
+C20orf26 20 20033158 20341346 + sense 0.0
+C20orf26 20 20033158 20341346 + antisense 0.0
+RP5-1002M8.4 20 20075045 20076328 - sense 0.0
+RP5-1002M8.4 20 20075045 20076328 - antisense 0.0
+RP5-1178H5.2 20 20194943 20195906 - sense 0.0
+RP5-1178H5.2 20 20194943 20195906 - antisense 0.0
+RPL17P1 20 20233947 20234482 - sense 0.0
+RPL17P1 20 20233947 20234482 - antisense 0.0
+RP5-1096J16.1 20 20239051 20248453 - sense 0.0
+RP5-1096J16.1 20 20239051 20248453 - antisense 0.0
+RN7SL690P 20 20297428 20297684 - sense 0.0
+RN7SL690P 20 20297428 20297684 - antisense 0.0
+INSM1 20 20348765 20351590 + sense 0.0
+INSM1 20 20348765 20351590 + antisense 0.0
+RALGAPA2 20 20370196 20693131 - sense 0.0
+RALGAPA2 20 20370196 20693131 - antisense 0.0
+EIF4E2P1 20 20640354 20640608 + sense 0.0
+EIF4E2P1 20 20640354 20640608 + antisense 0.0
+RP11-23O13.1 20 20701830 20702522 + sense 0.0
+RP11-23O13.1 20 20701830 20702522 + antisense 0.0
+RN7SL607P 20 20719078 20719374 - sense 0.0
+RN7SL607P 20 20719078 20719374 - antisense 0.0
+MRPS11P1 20 20834764 20835285 - sense 0.0
+MRPS11P1 20 20834764 20835285 - antisense 0.0
+RP5-1177M21.1 20 20951089 20953203 + sense 0.0
+RP5-1177M21.1 20 20951089 20953203 + antisense 0.0
+LINC00237 20 21068245 21086999 - sense 0.0
+LINC00237 20 21068245 21086999 - antisense 0.0
+RPL24P2 20 21095364 21095838 + sense 0.0
+RPL24P2 20 21095364 21095838 + antisense 0.0
+PLK1S1 20 21106624 21227260 + sense 0.0
+PLK1S1 20 21106624 21227260 + antisense 0.0
+RNA5SP477 20 21119597 21119715 - sense 0.0
+RNA5SP477 20 21119597 21119715 - antisense 0.0
+RP5-872K7.7 20 21129382 21143531 - sense 0.0
+RP5-872K7.7 20 21129382 21143531 - antisense 0.0
+RP4-777D9.2 20 21134664 21198927 - sense 0.0
+RP4-777D9.2 20 21134664 21198927 - antisense 0.0
+RPS15AP1 20 21146846 21147236 - sense 0.0
+RPS15AP1 20 21146846 21147236 - antisense 0.0
+ZNF877P 20 21246492 21247103 + sense 0.0
+ZNF877P 20 21246492 21247103 + antisense 0.0
+XRN2 20 21283942 21370463 + sense 0.0
+XRN2 20 21283942 21370463 + antisense 0.0
+NKX2-4 20 21376005 21378666 - sense 0.0
+NKX2-4 20 21376005 21378666 - antisense 0.0
+RP11-227D2.3 20 21378456 21381029 + sense 0.0
+RP11-227D2.3 20 21378456 21381029 + antisense 0.0
+RN7SKP140 20 21405396 21405679 - sense 0.0
+RN7SKP140 20 21405396 21405679 - antisense 0.0
+RP5-984P4.1 20 21468882 21469263 - sense 0.0
+RP5-984P4.1 20 21468882 21469263 - antisense 0.0
+GSTM3P1 20 21482033 21482606 + sense 0.0
+GSTM3P1 20 21482033 21482606 + antisense 0.0
+NKX2-2 20 21491648 21494664 - sense 0.0
+NKX2-2 20 21491648 21494664 - antisense 0.0
+NKX2-2-AS1 20 21492085 21492947 + sense 0.0
+NKX2-2-AS1 20 21492085 21492947 + antisense 0.0
+RP5-984P4.4 20 21510840 21511382 + sense 0.0
+RP5-984P4.4 20 21510840 21511382 + antisense 0.0
+PAX1 20 21686297 21696620 + sense 0.0
+PAX1 20 21686297 21696620 + antisense 0.0
+SLC25A6P1 20 21722941 21723715 - sense 0.0
+SLC25A6P1 20 21722941 21723715 - antisense 0.0
+RPL41P1 20 21735866 21736171 + sense 0.0
+RPL41P1 20 21735866 21736171 + antisense 0.0
+RP5-1185K9.1 20 21928285 21951421 + sense 0.0
+RP5-1185K9.1 20 21928285 21951421 + antisense 0.0
+RP11-125P18.1 20 22034831 22055238 + sense 0.0
+RP11-125P18.1 20 22034831 22055238 + antisense 0.0
+RP5-1097P24.1 20 22201192 22203921 + sense 0.0
+RP5-1097P24.1 20 22201192 22203921 + antisense 0.0
+RP5-828K20.1 20 22252690 22254092 - sense 0.0
+RP5-828K20.1 20 22252690 22254092 - antisense 0.0
+RP5-828K20.2 20 22260866 22263310 - sense 0.0
+RP5-828K20.2 20 22260866 22263310 - antisense 0.0
+RP5-1004I9.2 20 22324331 22324568 - sense 0.0
+RP5-1004I9.2 20 22324331 22324568 - antisense 0.0
+RP5-1004I9.1 20 22380989 22401281 - sense 0.0
+RP5-1004I9.1 20 22380989 22401281 - antisense 0.0
+LINC00261 20 22528309 22559280 - sense 0.0
+LINC00261 20 22528309 22559280 - antisense 0.0
+FOXA2 20 22561643 22566093 - sense 0.0
+FOXA2 20 22561643 22566093 - antisense 0.0
+RP4-788L20.3 20 22568160 22588155 - sense 0.0
+RP4-788L20.3 20 22568160 22588155 - antisense 0.0
+RP11-359G22.2 20 22656710 22665982 - sense 0.0
+RP11-359G22.2 20 22656710 22665982 - antisense 0.0
+KRT18P3 20 22713440 22714727 - sense 0.0
+KRT18P3 20 22713440 22714727 - antisense 0.0
+AL158175.1 20 22713848 22713939 - sense 0.0
+AL158175.1 20 22713848 22713939 - antisense 0.0
+CYB5P4 20 22866308 22866706 - sense 0.0
+CYB5P4 20 22866308 22866706 - antisense 0.0
+RP11-189G24.2 20 22941171 22946700 - sense 0.0
+RP11-189G24.2 20 22941171 22946700 - antisense 0.0
+RP4-753D10.5 20 22990846 23011422 - sense 0.0
+RP4-753D10.5 20 22990846 23011422 - antisense 0.0
+RP4-753D10.3 20 23012179 23019873 + sense 0.0
+RP4-753D10.3 20 23012179 23019873 + antisense 0.0
+SSTR4 20 23016057 23017314 + sense 0.0
+SSTR4 20 23016057 23017314 + antisense 0.0
+THBD 20 23026270 23030378 - sense 0.0
+THBD 20 23026270 23030378 - antisense 0.0
+CD93 20 23059986 23066977 - sense 0.0
+CD93 20 23059986 23066977 - antisense 0.0
+AL118508.1 20 23061083 23061278 - sense 0.0
+AL118508.1 20 23061083 23061278 - antisense 0.0
+LINC00656 20 23105705 23113258 - sense 0.0
+LINC00656 20 23105705 23113258 - antisense 0.0
+RNA5SP478 20 23141494 23141608 - sense 0.0
+RNA5SP478 20 23141494 23141608 - antisense 0.0
+RP4-737E23.2 20 23168765 23170944 + sense 0.0
+RP4-737E23.2 20 23168765 23170944 + antisense 0.0
+RP3-322G13.7 20 23327578 23332123 - sense 0.0
+RP3-322G13.7 20 23327578 23332123 - antisense 0.0
+AL096677.1 20 23330015 23334066 - sense 0.0
+AL096677.1 20 23330015 23334066 - antisense 0.0
+NXT1 20 23331373 23335414 + sense 0.0
+NXT1 20 23331373 23335414 + antisense 0.0
+RP3-322G13.5 20 23337231 23338753 - sense 0.0
+RP3-322G13.5 20 23337231 23338753 - antisense 0.0
+GZF1 20 23342787 23353700 + sense 0.0
+GZF1 20 23342787 23353700 + antisense 0.0
+NAPB 20 23355159 23402125 - sense 0.0
+NAPB 20 23355159 23402125 - antisense 0.0
+RNA5SP479 20 23361533 23361649 - sense 0.0
+RNA5SP479 20 23361533 23361649 - antisense 0.0
+CSTL1 20 23420322 23425567 + sense 0.0
+CSTL1 20 23420322 23425567 + antisense 0.0
+CST11 20 23431040 23433494 - sense 0.0
+CST11 20 23431040 23433494 - antisense 0.0
+Y_RNA 20 23438221 23438322 - sense 0.0
+Y_RNA 20 23438221 23438322 - antisense 0.0
+CST12P 20 23456337 23460435 + sense 0.0
+CST12P 20 23456337 23460435 + antisense 0.0
+CST8 20 23471738 23476655 + sense 0.0
+CST8 20 23471738 23476655 + antisense 0.0
+RP3-333B15.4 20 23497521 23498706 - sense 0.0
+RP3-333B15.4 20 23497521 23498706 - antisense 0.0
+CST13P 20 23499783 23522655 + sense 0.0
+CST13P 20 23499783 23522655 + antisense 0.0
+CST9LP1 20 23528401 23531289 - sense 0.0
+CST9LP1 20 23528401 23531289 - antisense 0.0
+CST9L 20 23545369 23549386 - sense 0.0
+CST9L 20 23545369 23549386 - antisense 0.0
+RP11-218C14.2 20 23564282 23567147 + sense 0.0
+RP11-218C14.2 20 23564282 23567147 + antisense 0.0
+CST9 20 23583047 23586513 - sense 0.0
+CST9 20 23583047 23586513 - antisense 0.0
+CST3 20 23608534 23619110 - sense 0.0
+CST3 20 23608534 23619110 - antisense 0.0
+RP11-218C14.8 20 23612463 23612953 - sense 0.0
+RP11-218C14.8 20 23612463 23612953 - antisense 0.0
+RP11-218C14.5 20 23635862 23637027 - sense 0.0
+RP11-218C14.5 20 23635862 23637027 - antisense 0.0
+CST4 20 23666277 23669677 - sense 0.0
+CST4 20 23666277 23669677 - antisense 0.0
+CST2P1 20 23691957 23692043 - sense 0.0
+CST2P1 20 23691957 23692043 - antisense 0.0
+CST1 20 23728190 23731905 - sense 0.0
+CST1 20 23728190 23731905 - antisense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + sense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + antisense 0.0
+CST2 20 23804406 23807368 - sense 0.0
+CST2 20 23804406 23807368 - antisense 0.0
+CST5 20 23856572 23860387 - sense 0.0
+CST5 20 23856572 23860387 - antisense 0.0
+CSTP1 20 23899408 23902806 - sense 0.0
+CSTP1 20 23899408 23902806 - antisense 0.0
+RP5-831C21.1 20 23961222 23961371 - sense 0.0
+RP5-831C21.1 20 23961222 23961371 - antisense 0.0
+GGTLC1 20 23965690 23969416 - sense 0.0
+GGTLC1 20 23965690 23969416 - antisense 0.0
+POM121L3P 20 23969929 23971091 + sense 0.0
+POM121L3P 20 23969929 23971091 + antisense 0.0
+RP5-1100I6.1 20 24123226 24125022 - sense 0.0
+RP5-1100I6.1 20 24123226 24125022 - antisense 0.0
+RP5-1100I6.2 20 24180403 24205224 + sense 0.0
+RP5-1100I6.2 20 24180403 24205224 + antisense 0.0
+RNU1-23P 20 24217891 24218034 + sense 0.0
+RNU1-23P 20 24217891 24218034 + antisense 0.0
+RP4-564O4.1 20 24278221 24298722 - sense 0.0
+RP4-564O4.1 20 24278221 24298722 - antisense 0.0
+GAPDHP53 20 24426027 24426950 + sense 0.0
+GAPDHP53 20 24426027 24426950 + antisense 0.0
+SYNDIG1 20 24449835 24647252 + sense 0.0
+SYNDIG1 20 24449835 24647252 + antisense 0.0
+RP11-526K17.2 20 24472108 24482981 - sense 0.0
+RP11-526K17.2 20 24472108 24482981 - antisense 0.0
+RP5-860P4.2 20 24660183 24661627 + sense 0.0
+RP5-860P4.2 20 24660183 24661627 + antisense 0.0
+CST7 20 24929866 24940564 + sense 0.0
+CST7 20 24929866 24940564 + antisense 0.0
+APMAP 20 24943561 24973615 - sense 0.0
+APMAP 20 24943561 24973615 - antisense 0.0
+RNU6-1257P 20 24954807 24954916 + sense 0.0
+RNU6-1257P 20 24954807 24954916 + antisense 0.0
+ACSS1 20 24986868 25039616 - sense 0.0
+ACSS1 20 24986868 25039616 - antisense 0.0
+VSX1 20 25051521 25062996 - sense 0.0
+VSX1 20 25051521 25062996 - antisense 0.0
+RP5-1025A1.2 20 25079741 25080564 + sense 0.0
+RP5-1025A1.2 20 25079741 25080564 + antisense 0.0
+RP4-738P15.1 20 25121425 25129894 - sense 0.0
+RP4-738P15.1 20 25121425 25129894 - antisense 0.0
+RP4-738P15.4 20 25141803 25142697 - sense 0.0
+RP4-738P15.4 20 25141803 25142697 - antisense 0.0
+ENTPD6 20 25176329 25207365 + sense 0.0
+ENTPD6 20 25176329 25207365 + antisense 0.0
+Y_RNA 20 25195334 25195434 + sense 0.0
+Y_RNA 20 25195334 25195434 + antisense 0.0
+AL035252.1 20 25207122 25207370 - sense 0.0
+AL035252.1 20 25207122 25207370 - antisense 0.0
+PYGB 20 25228705 25278650 + sense 0.0
+PYGB 20 25228705 25278650 + antisense 0.0
+ABHD12 20 25275379 25371619 - sense 0.0
+ABHD12 20 25275379 25371619 - antisense 0.0
+PPIAP2 20 25348911 25349402 - sense 0.0
+PPIAP2 20 25348911 25349402 - antisense 0.0
+GINS1 20 25388363 25433264 + sense 0.0
+GINS1 20 25388363 25433264 + antisense 0.0
+NINL 20 25433341 25566153 - sense 0.0
+NINL 20 25433341 25566153 - antisense 0.0
+RNU6ATAC17P 20 25591789 25591859 + sense 0.0
+RNU6ATAC17P 20 25591789 25591859 + antisense 0.0
+NANP 20 25593571 25604811 - sense 0.0
+NANP 20 25593571 25604811 - antisense 0.0
+ZNF337-AS1 20 25604681 25658710 + sense 0.0
+ZNF337-AS1 20 25604681 25658710 + antisense 0.0
+RN7SL594P 20 25635232 25635517 - sense 0.0
+RN7SL594P 20 25635232 25635517 - antisense 0.0
+MED28P7 20 25650493 25651022 - sense 0.0
+MED28P7 20 25650493 25651022 - antisense 0.0
+ZNF337 20 25654851 25677477 - sense 0.0
+ZNF337 20 25654851 25677477 - antisense 0.0
+VN1R108P 20 25714900 25715729 + sense 0.0
+VN1R108P 20 25714900 25715729 + antisense 0.0
+RP13-401N8.1 20 25731854 25733397 + sense 0.0
+RP13-401N8.1 20 25731854 25733397 + antisense 0.0
+FAM182B 20 25744102 25848861 - sense 0.0
+FAM182B 20 25744102 25848861 - antisense 0.0
+RP13-401N8.3 20 25816621 25817468 - sense 0.0
+RP13-401N8.3 20 25816621 25817468 - antisense 0.0
+CFTRP1 20 25900135 25900317 - sense 0.0
+CFTRP1 20 25900135 25900317 - antisense 0.0
+RP4-760C5.5 20 25936448 25949924 + sense 0.0
+RP4-760C5.5 20 25936448 25949924 + antisense 0.0
+RP4-760C5.3 20 25989427 25991167 - sense 0.0
+RP4-760C5.3 20 25989427 25991167 - antisense 0.0
+CTD-2514C3.1 20 25999468 26001320 + sense 0.0
+CTD-2514C3.1 20 25999468 26001320 + antisense 0.0
+FAM182A 20 26035291 26073683 + sense 0.0
+FAM182A 20 26035291 26073683 + antisense 0.0
+NCOR1P1 20 26084052 26094664 - sense 0.0
+NCOR1P1 20 26084052 26094664 - antisense 0.0
+RP13-329D4.3 20 26113523 26114834 - sense 0.0
+RP13-329D4.3 20 26113523 26114834 - antisense 0.0
+MIR663A 20 26167556 26232162 - sense 0.0
+MIR663A 20 26167556 26232162 - antisense 0.0
+RP3-410C9.2 20 26171625 26174582 + sense 0.0
+RP3-410C9.2 20 26171625 26174582 + antisense 0.0
+RP4-610C12.2 20 29449474 29449652 - sense 0.0
+RP4-610C12.2 20 29449474 29449652 - antisense 0.0
+RP4-610C12.4 20 29513582 29521213 - sense 0.0
+RP4-610C12.4 20 29513582 29521213 - antisense 0.0
+RP4-610C12.3 20 29521637 29522987 - sense 0.0
+RP4-610C12.3 20 29521637 29522987 - antisense 0.0
+Y_RNA 20 29543691 29543802 - sense 0.0
+Y_RNA 20 29543691 29543802 - antisense 0.0
+RP4-610C12.1 20 29558488 29596406 - sense 0.0
+RP4-610C12.1 20 29558488 29596406 - antisense 0.0
+FRG1B 20 29611857 29634010 + sense 0.0
+FRG1B 20 29611857 29634010 + antisense 0.0
+AL441988.1 20 29637162 29637300 + sense 0.0
+AL441988.1 20 29637162 29637300 + antisense 0.0
+MLLT10P1 20 29637799 29638060 - sense 0.0
+MLLT10P1 20 29637799 29638060 - antisense 0.0
+DEFB115 20 29845467 29847435 + sense 0.0
+DEFB115 20 29845467 29847435 + antisense 0.0
+DKKL1P1 20 29861973 29862670 + sense 0.0
+DKKL1P1 20 29861973 29862670 + antisense 0.0
+RP5-854E16.2 20 29873120 29874638 - sense 0.0
+RP5-854E16.2 20 29873120 29874638 - antisense 0.0
+DEFB116 20 29891015 29896388 - sense 0.0
+DEFB116 20 29891015 29896388 - antisense 0.0
+RPL31P3 20 29899106 29899765 - sense 0.0
+RPL31P3 20 29899106 29899765 - antisense 0.0
+HAUS6P2 20 29929174 29932274 - sense 0.0
+HAUS6P2 20 29929174 29932274 - antisense 0.0
+RNA5SP480 20 29944673 29944781 + sense 0.0
+RNA5SP480 20 29944673 29944781 + antisense 0.0
+DEFB117 20 29948578 29948733 + sense 0.0
+DEFB117 20 29948578 29948733 + antisense 0.0
+DEFB118 20 29956421 29961726 + sense 0.0
+DEFB118 20 29956421 29961726 + antisense 0.0
+SNORA40 20 29964122 29964249 + sense 0.0
+SNORA40 20 29964122 29964249 + antisense 0.0
+DEFB119 20 29964967 29978406 - sense 0.0
+DEFB119 20 29964967 29978406 - antisense 0.0
+DEFB121 20 29992648 30000641 - sense 0.0
+DEFB121 20 29992648 30000641 - antisense 0.0
+DEFB122 20 30009239 30016983 - sense 0.0
+DEFB122 20 30009239 30016983 - antisense 0.0
+DEFB123 20 30028322 30038060 + sense 0.0
+DEFB123 20 30028322 30038060 + antisense 0.0
+DEFB124 20 30053309 30064560 - sense 0.0
+DEFB124 20 30053309 30064560 - antisense 0.0
+REM1 20 30063096 30072708 + sense 0.0
+REM1 20 30063096 30072708 + antisense 0.0
+LINC00028 20 30073581 30075377 + sense 0.0
+LINC00028 20 30073581 30075377 + antisense 0.0
+HM13 20 30102231 30157370 + sense 0.0
+HM13 20 30102231 30157370 + antisense 0.0
+RP3-324O17.4 20 30135307 30135852 + sense 0.0
+RP3-324O17.4 20 30135307 30135852 + antisense 0.0
+HM13-IT1 20 30150969 30151879 + sense 0.0
+HM13-IT1 20 30150969 30151879 + antisense 0.0
+HM13-AS1 20 30155510 30161066 - sense 0.0
+HM13-AS1 20 30155510 30161066 - antisense 0.0
+RNU6-384P 20 30168892 30168995 + sense 0.0
+RNU6-384P 20 30168892 30168995 + antisense 0.0
+ID1 20 30193086 30194318 + sense 0.0
+ID1 20 30193086 30194318 + antisense 0.0
+MIR3193 20 30194989 30195043 + sense 0.0
+MIR3193 20 30194989 30195043 + antisense 0.0
+COX4I2 20 30225691 30232809 + sense 0.0
+COX4I2 20 30225691 30232809 + antisense 0.0
+BCL2L1 20 30252255 30311792 - sense 0.0
+BCL2L1 20 30252255 30311792 - antisense 0.0
+RP11-243J16.7 20 30274019 30304628 + sense 0.0
+RP11-243J16.7 20 30274019 30304628 + antisense 0.0
+AL160175.1 20 30309001 30309134 + sense 0.0
+AL160175.1 20 30309001 30309134 + antisense 0.0
+TPX2 20 30327074 30389608 + sense 0.0
+TPX2 20 30327074 30389608 + antisense 0.0
+RP11-243J16.8 20 30396306 30396552 - sense 0.0
+RP11-243J16.8 20 30396306 30396552 - antisense 0.0
+MYLK2 20 30407111 30422492 + sense 0.0
+MYLK2 20 30407111 30422492 + antisense 0.0
+FOXS1 20 30432103 30433420 - sense 0.0
+FOXS1 20 30432103 30433420 - antisense 0.0
+DUSP15 20 30435440 30458550 - sense 0.0
+DUSP15 20 30435440 30458550 - antisense 0.0
+TTLL9 20 30458505 30532764 + sense 0.0
+TTLL9 20 30458505 30532764 + antisense 0.0
+RNU1-94P 20 30489057 30489229 + sense 0.0
+RNU1-94P 20 30489057 30489229 + antisense 0.0
+PDRG1 20 30532758 30539895 - sense 0.0
+PDRG1 20 30532758 30539895 - antisense 0.0
+XKR7 20 30555805 30591190 + sense 0.0
+XKR7 20 30555805 30591190 + antisense 0.0
+RNA5SP481 20 30596154 30596275 + sense 0.0
+RNA5SP481 20 30596154 30596275 + antisense 0.0
+CCM2L 20 30598245 30619984 + sense 0.0
+CCM2L 20 30598245 30619984 + antisense 0.0
+RP1-310O13.7 20 30615556 30619378 - sense 0.0
+RP1-310O13.7 20 30615556 30619378 - antisense 0.0
+RNA5SP482 20 30638391 30638508 + sense 0.0
+RNA5SP482 20 30638391 30638508 + antisense 0.0
+HCK 20 30639991 30689659 + sense 0.0
+HCK 20 30639991 30689659 + antisense 0.0
+TM9SF4 20 30697309 30755061 + sense 0.0
+TM9SF4 20 30697309 30755061 + antisense 0.0
+AL049539.1 20 30706457 30706554 - sense 0.0
+AL049539.1 20 30706457 30706554 - antisense 0.0
+RSL24D1P6 20 30758193 30758593 - sense 0.0
+RSL24D1P6 20 30758193 30758593 - antisense 0.0
+TSPY26P 20 30774280 30778330 - sense 0.0
+TSPY26P 20 30774280 30778330 - antisense 0.0
+PLAGL2 20 30780306 30795594 - sense 0.0
+PLAGL2 20 30780306 30795594 - antisense 0.0
+POFUT1 20 30795683 30826470 + sense 0.0
+POFUT1 20 30795683 30826470 + antisense 0.0
+MIR1825 20 30825598 30825650 + sense 0.0
+MIR1825 20 30825598 30825650 + antisense 0.0
+KIF3B 20 30865467 30922814 + sense 0.0
+KIF3B 20 30865467 30922814 + antisense 0.0
+AL121897.1 20 30865503 30865591 - sense 0.0
+AL121897.1 20 30865503 30865591 - antisense 0.0
+ASXL1 20 30946155 31027122 + sense 0.0
+ASXL1 20 30946155 31027122 + antisense 0.0
+C20orf112 20 31030862 31172876 - sense 0.0
+C20orf112 20 31030862 31172876 - antisense 0.0
+RP5-1184F4.5 20 31037558 31041410 + sense 0.0
+RP5-1184F4.5 20 31037558 31041410 + antisense 0.0
+RP11-410N8.3 20 31148895 31161690 + sense 0.0
+RP11-410N8.3 20 31148895 31161690 + antisense 0.0
+RP11-410N8.1 20 31169765 31181702 + sense 0.0
+RP11-410N8.1 20 31169765 31181702 + antisense 0.0
+RP11-410N8.4 20 31175281 31196695 + sense 0.0
+RP11-410N8.4 20 31175281 31196695 + antisense 0.0
+C20orf203 20 31219428 31261743 - sense 0.0
+C20orf203 20 31219428 31261743 - antisense 0.0
+BAK1P1 20 31276723 31278816 - sense 0.0
+BAK1P1 20 31276723 31278816 - antisense 0.0
+COMMD7 20 31290493 31331803 - sense 0.0
+COMMD7 20 31290493 31331803 - antisense 0.0
+DNMT3B 20 31350191 31397162 + sense 0.0
+DNMT3B 20 31350191 31397162 + antisense 0.0
+MAPRE1 20 31407699 31438211 + sense 0.0
+MAPRE1 20 31407699 31438211 + antisense 0.0
+RP5-1085F17.4 20 31430934 31442063 - sense 0.0
+RP5-1085F17.4 20 31430934 31442063 - antisense 0.0
+RP5-1085F17.3 20 31444848 31446557 + sense 0.0
+RP5-1085F17.3 20 31444848 31446557 + antisense 0.0
+EFCAB8 20 31446729 31549006 + sense 0.0
+EFCAB8 20 31446729 31549006 + antisense 0.0
+SUN5 20 31571579 31592239 - sense 0.0
+SUN5 20 31571579 31592239 - antisense 0.0
+BPIFB2 20 31595406 31611515 + sense 0.0
+BPIFB2 20 31595406 31611515 + antisense 0.0
+BPIFB6 20 31619454 31631853 + sense 0.0
+BPIFB6 20 31619454 31631853 + antisense 0.0
+HDHD1P3 20 31635323 31635958 - sense 0.0
+HDHD1P3 20 31635323 31635958 - antisense 0.0
+BPIFB3 20 31643230 31661434 + sense 0.0
+BPIFB3 20 31643230 31661434 + antisense 0.0
+AL121756.1 20 31645394 31645476 - sense 0.0
+AL121756.1 20 31645394 31645476 - antisense 0.0
+BPIFB4 20 31667450 31699557 + sense 0.0
+BPIFB4 20 31667450 31699557 + antisense 0.0
+BPIFA2 20 31749574 31769218 + sense 0.0
+BPIFA2 20 31749574 31769218 + antisense 0.0
+SOCS2P1 20 31775197 31776098 + sense 0.0
+SOCS2P1 20 31775197 31776098 + antisense 0.0
+BPIFA4P 20 31781391 31798268 + sense 0.0
+BPIFA4P 20 31781391 31798268 + antisense 0.0
+RP11-49G10.3 20 31802726 31804873 - sense 0.0
+RP11-49G10.3 20 31802726 31804873 - antisense 0.0
+BPIFA3 20 31805116 31815564 + sense 0.0
+BPIFA3 20 31805116 31815564 + antisense 0.0
+AL121901.1 20 31823091 31823387 + sense 0.0
+AL121901.1 20 31823091 31823387 + antisense 0.0
+BPIFA1 20 31823801 31831115 + sense 0.0
+BPIFA1 20 31823801 31831115 + antisense 0.0
+RPL12P3 20 31860068 31860463 - sense 0.0
+RPL12P3 20 31860068 31860463 - antisense 0.0
+BPIFB1 20 31861286 31897684 + sense 0.0
+BPIFB1 20 31861286 31897684 + antisense 0.0
+BPIFB5P 20 31904675 31917775 + sense 0.0
+BPIFB5P 20 31904675 31917775 + antisense 0.0
+BPIFB9P 20 31935526 31942250 + sense 0.0
+BPIFB9P 20 31935526 31942250 + antisense 0.0
+CDK5RAP1 20 31946645 31989367 - sense 0.0
+CDK5RAP1 20 31946645 31989367 - antisense 0.0
+SNTA1 20 31995761 32031698 - sense 0.0
+SNTA1 20 31995761 32031698 - antisense 0.0
+RN7SL511P 20 32046605 32046854 - sense 0.0
+RN7SL511P 20 32046605 32046854 - antisense 0.0
+CBFA2T2 20 32077881 32237842 + sense 0.0
+CBFA2T2 20 32077881 32237842 + antisense 0.0
+RP1-63M2.6 20 32244893 32245415 + sense 0.0
+RP1-63M2.6 20 32244893 32245415 + antisense 0.0
+NECAB3 20 32244893 32262269 - sense 0.0
+NECAB3 20 32244893 32262269 - antisense 0.0
+C20orf144 20 32250090 32253425 + sense 0.0
+C20orf144 20 32250090 32253425 + antisense 0.0
+ACTL10 20 32254304 32256331 + sense 0.0
+ACTL10 20 32254304 32256331 + antisense 0.0
+RP1-63M2.5 20 32262323 32263186 + sense 0.0
+RP1-63M2.5 20 32262323 32263186 + antisense 0.0
+E2F1 20 32263489 32274210 - sense 0.0
+E2F1 20 32263489 32274210 - antisense 0.0
+PXMP4 20 32294512 32308125 - sense 0.0
+PXMP4 20 32294512 32308125 - antisense 0.0
+RP4-553F4.2 20 32316737 32319634 - sense 0.0
+RP4-553F4.2 20 32316737 32319634 - antisense 0.0
+ZNF341 20 32319463 32380075 + sense 0.0
+ZNF341 20 32319463 32380075 + antisense 0.0
+RPL31P2 20 32339973 32340349 - sense 0.0
+RPL31P2 20 32339973 32340349 - antisense 0.0
+RP4-553F4.6 20 32375179 32398903 - sense 0.0
+RP4-553F4.6 20 32375179 32398903 - antisense 0.0
+CHMP4B 20 32399110 32442172 + sense 0.0
+CHMP4B 20 32399110 32442172 + antisense 0.0
+TPM3P2 20 32500129 32501142 - sense 0.0
+TPM3P2 20 32500129 32501142 - antisense 0.0
+PIGPP3 20 32552968 32553382 + sense 0.0
+PIGPP3 20 32552968 32553382 + antisense 0.0
+RP5-1125A11.1 20 32570858 32582163 - sense 0.0
+RP5-1125A11.1 20 32570858 32582163 - antisense 0.0
+RALY 20 32581452 32696114 + sense 0.0
+RALY 20 32581452 32696114 + antisense 0.0
+RP5-1125A11.4 20 32602775 32605555 - sense 0.0
+RP5-1125A11.4 20 32602775 32605555 - antisense 0.0
+MIR4755 20 32636925 32636996 + sense 0.0
+MIR4755 20 32636925 32636996 + antisense 0.0
+RP1-64K7.4 20 32668955 32669754 + sense 0.0
+RP1-64K7.4 20 32668955 32669754 + antisense 0.0
+EIF2S2 20 32676104 32700138 - sense 0.0
+EIF2S2 20 32676104 32700138 - antisense 0.0
+RPS2P1 20 32710276 32711096 + sense 0.0
+RPS2P1 20 32710276 32711096 + antisense 0.0
+ASIP 20 32782375 32857150 + sense 0.0
+ASIP 20 32782375 32857150 + antisense 0.0
+XPOTP1 20 32801301 32803698 - sense 0.0
+XPOTP1 20 32801301 32803698 - antisense 0.0
+RP4-785G19.5 20 32822646 32868979 - sense 0.0
+RP4-785G19.5 20 32822646 32868979 - antisense 0.0
+RP4-785G19.2 20 32833759 32834343 - sense 0.0
+RP4-785G19.2 20 32833759 32834343 - antisense 0.0
+AHCY 20 32868074 32899608 - sense 0.0
+AHCY 20 32868074 32899608 - antisense 0.0
+CTD-3216D2.5 20 32869438 32874272 - sense 0.0
+CTD-3216D2.5 20 32869438 32874272 - antisense 0.0
+CTD-3216D2.4 20 32935477 32935591 - sense 0.0
+CTD-3216D2.4 20 32935477 32935591 - antisense 0.0
+ITCH 20 32951041 33099198 + sense 0.0
+ITCH 20 32951041 33099198 + antisense 0.0
+Y_RNA 20 32971971 32972071 - sense 0.0
+Y_RNA 20 32971971 32972071 - antisense 0.0
+CDC42P1 20 32989955 32990502 - sense 0.0
+CDC42P1 20 32989955 32990502 - antisense 0.0
+ITCH-AS1 20 33029397 33029830 - sense 0.0
+ITCH-AS1 20 33029397 33029830 - antisense 0.0
+ITCH-IT1 20 33038735 33042357 + sense 0.0
+ITCH-IT1 20 33038735 33042357 + antisense 0.0
+MIR644A 20 33054130 33054223 + sense 0.0
+MIR644A 20 33054130 33054223 + antisense 0.0
+FDX1P1 20 33063729 33064279 - sense 0.0
+FDX1P1 20 33063729 33064279 - antisense 0.0
+DYNLRB1 20 33104214 33128762 + sense 0.0
+DYNLRB1 20 33104214 33128762 + antisense 0.0
+Y_RNA 20 33114315 33114411 - sense 0.0
+Y_RNA 20 33114315 33114411 - antisense 0.0
+MAP1LC3A 20 33134658 33148149 + sense 0.0
+MAP1LC3A 20 33134658 33148149 + antisense 0.0
+PIGU 20 33148346 33264910 - sense 0.0
+PIGU 20 33148346 33264910 - antisense 0.0
+RP11-346K17.3 20 33276492 33276782 + sense 0.0
+RP11-346K17.3 20 33276492 33276782 + antisense 0.0
+NCOA6 20 33284722 33413452 - sense 0.0
+NCOA6 20 33284722 33413452 - antisense 0.0
+TP53INP2 20 33292094 33301243 + sense 0.0
+TP53INP2 20 33292094 33301243 + antisense 0.0
+HMGB3P1 20 33421378 33422265 - sense 0.0
+HMGB3P1 20 33421378 33422265 - antisense 0.0
+GGT7 20 33432523 33460663 - sense 0.0
+GGT7 20 33432523 33460663 - antisense 0.0
+ACSS2 20 33459949 33515769 + sense 0.0
+ACSS2 20 33459949 33515769 + antisense 0.0
+GSS 20 33516236 33543620 - sense 0.0
+GSS 20 33516236 33543620 - antisense 0.0
+MYH7B 20 33563206 33590240 + sense 0.0
+MYH7B 20 33563206 33590240 + antisense 0.0
+MIR499A 20 33578179 33578300 + sense 0.0
+MIR499A 20 33578179 33578300 + antisense 0.0
+TRPC4AP 20 33590207 33680674 - sense 0.0
+TRPC4AP 20 33590207 33680674 - antisense 0.0
+RNU6-407P 20 33618120 33618223 - sense 0.0
+RNU6-407P 20 33618120 33618223 - antisense 0.0
+EDEM2 20 33703167 33865928 - sense 0.0
+EDEM2 20 33703167 33865928 - antisense 0.0
+SNORD56 20 33704939 33705010 - sense 0.0
+SNORD56 20 33704939 33705010 - antisense 0.0
+PROCR 20 33759876 33765165 + sense 0.0
+PROCR 20 33759876 33765165 + antisense 0.0
+RNA5SP483 20 33783109 33783226 + sense 0.0
+RNA5SP483 20 33783109 33783226 + antisense 0.0
+RP4-614O4.12 20 33789550 33791091 - sense 0.0
+RP4-614O4.12 20 33789550 33791091 - antisense 0.0
+AL121753.1 20 33802392 33802492 + sense 0.0
+AL121753.1 20 33802392 33802492 + antisense 0.0
+MMP24-AS1 20 33804265 33865934 - sense 0.0
+MMP24-AS1 20 33804265 33865934 - antisense 0.0
+MT1P3 20 33805812 33805988 + sense 0.0
+MT1P3 20 33805812 33805988 + antisense 0.0
+MMP24 20 33814457 33864801 + sense 0.0
+MMP24 20 33814457 33864801 + antisense 0.0
+RP4-614O4.11 20 33855688 33867846 - sense 0.0
+RP4-614O4.11 20 33855688 33867846 - antisense 0.0
+EIF6 20 33866714 33872788 - sense 0.0
+EIF6 20 33866714 33872788 - antisense 0.0
+FAM83C-AS1 20 33873054 33873559 + sense 0.0
+FAM83C-AS1 20 33873054 33873559 + antisense 0.0
+FAM83C 20 33873534 33880204 - sense 0.0
+FAM83C 20 33873534 33880204 - antisense 0.0
+UQCC1 20 33890369 33999944 - sense 0.0
+UQCC1 20 33890369 33999944 - antisense 0.0
+GDF5OS 20 34020827 34023248 + sense 0.0
+GDF5OS 20 34020827 34023248 + antisense 0.0
+GDF5 20 34021145 34042568 - sense 0.0
+GDF5 20 34021145 34042568 - antisense 0.0
+MIR1289-1 20 34041776 34041919 - sense 0.0
+MIR1289-1 20 34041776 34041919 - antisense 0.0
+CEP250 20 34042985 34099804 + sense 0.0
+CEP250 20 34042985 34099804 + antisense 0.0
+RP3-477O4.14 20 34064028 34078808 - sense 0.0
+RP3-477O4.14 20 34064028 34078808 - antisense 0.0
+RP3-477O4.16 20 34106682 34107108 + sense 0.0
+RP3-477O4.16 20 34106682 34107108 + antisense 0.0
+RP3-477O4.5 20 34108569 34117481 - sense 0.0
+RP3-477O4.5 20 34108569 34117481 - antisense 0.0
+C20orf173 20 34111014 34117481 - sense 0.0
+C20orf173 20 34111014 34117481 - antisense 0.0
+ERGIC3 20 34129770 34145405 + sense 0.0
+ERGIC3 20 34129770 34145405 + antisense 0.0
+RPL36P4 20 34132175 34132492 - sense 0.0
+RPL36P4 20 34132175 34132492 - antisense 0.0
+FER1L4 20 34146507 34195484 - sense 0.0
+FER1L4 20 34146507 34195484 - antisense 0.0
+RPL37P1 20 34176246 34176529 + sense 0.0
+RPL37P1 20 34176246 34176529 + antisense 0.0
+SPAG4 20 34203814 34208971 + sense 0.0
+SPAG4 20 34203814 34208971 + antisense 0.0
+CPNE1 20 34213953 34252878 - sense 0.0
+CPNE1 20 34213953 34252878 - antisense 0.0
+RP1-309K20.6 20 34220262 34262466 - sense 0.0
+RP1-309K20.6 20 34220262 34262466 - antisense 0.0
+RN7SKP271 20 34231065 34231384 + sense 0.0
+RN7SKP271 20 34231065 34231384 + antisense 0.0
+RNU6-759P 20 34235250 34235352 - sense 0.0
+RNU6-759P 20 34235250 34235352 - antisense 0.0
+RBM12 20 34236847 34252878 - sense 0.0
+RBM12 20 34236847 34252878 - antisense 0.0
+NFS1 20 34255977 34287281 - sense 0.0
+NFS1 20 34255977 34287281 - antisense 0.0
+ROMO1 20 34287194 34288906 + sense 0.0
+ROMO1 20 34287194 34288906 + antisense 0.0
+RBM39 20 34291531 34330234 - sense 0.0
+RBM39 20 34291531 34330234 - antisense 0.0
+snoU13 20 34304393 34304492 + sense 0.0
+snoU13 20 34304393 34304492 + antisense 0.0
+RPF2P1 20 34340736 34341641 + sense 0.0
+RPF2P1 20 34340736 34341641 + antisense 0.0
+RNU6-1166P 20 34357707 34357789 - sense 0.0
+RNU6-1166P 20 34357707 34357789 - antisense 0.0
+PHF20 20 34359896 34538303 + sense 0.0
+PHF20 20 34359896 34538303 + antisense 0.0
+COX7BP2 20 34438596 34438837 - sense 0.0
+COX7BP2 20 34438596 34438837 - antisense 0.0
+Y_RNA 20 34441174 34441286 - sense 0.0
+Y_RNA 20 34441174 34441286 - antisense 0.0
+HIGD1AP16 20 34466398 34466655 + sense 0.0
+HIGD1AP16 20 34466398 34466655 + antisense 0.0
+RNU4-40P 20 34475581 34475723 + sense 0.0
+RNU4-40P 20 34475581 34475723 + antisense 0.0
+RNU6-937P 20 34516492 34516597 - sense 0.0
+RNU6-937P 20 34516492 34516597 - antisense 0.0
+SCAND1 20 34541539 34547394 - sense 0.0
+SCAND1 20 34541539 34547394 - antisense 0.0
+CNBD2 20 34556512 34618622 + sense 0.0
+CNBD2 20 34556512 34618622 + antisense 0.0
+LINC00657 20 34633544 34638882 - sense 0.0
+LINC00657 20 34633544 34638882 - antisense 0.0
+RP4-550H1.4 20 34660363 34673182 + sense 0.0
+RP4-550H1.4 20 34660363 34673182 + antisense 0.0
+HMGB3P2 20 34663940 34664523 - sense 0.0
+HMGB3P2 20 34663940 34664523 - antisense 0.0
+RP4-550H1.5 20 34674174 34676114 - sense 0.0
+RP4-550H1.5 20 34674174 34676114 - antisense 0.0
+EPB41L1 20 34679426 34820721 + sense 0.0
+EPB41L1 20 34679426 34820721 + antisense 0.0
+snoU13 20 34708884 34708994 + sense 0.0
+snoU13 20 34708884 34708994 + antisense 0.0
+RP11-234K24.3 20 34736648 34743682 - sense 0.0
+RP11-234K24.3 20 34736648 34743682 - antisense 0.0
+AL121895.1 20 34756461 34758180 - sense 0.0
+AL121895.1 20 34756461 34758180 - antisense 0.0
+AAR2 20 34824381 34858840 + sense 0.0
+AAR2 20 34824381 34858840 + antisense 0.0
+DLGAP4 20 34894258 35157040 + sense 0.0
+DLGAP4 20 34894258 35157040 + antisense 0.0
+RP5-977B1.7 20 35136563 35201794 - sense 0.0
+RP5-977B1.7 20 35136563 35201794 - antisense 0.0
+MYL9 20 35169887 35178228 + sense 0.0
+MYL9 20 35169887 35178228 + antisense 0.0
+RP5-977B1.11 20 35177530 35232932 - sense 0.0
+RP5-977B1.11 20 35177530 35232932 - antisense 0.0
+TGIF2 20 35201891 35222353 + sense 0.0
+TGIF2 20 35201891 35222353 + antisense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + sense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + antisense 0.0
+C20orf24 20 35234137 35240960 + sense 0.0
+C20orf24 20 35234137 35240960 + antisense 0.0
+SLA2 20 35240721 35274619 - sense 0.0
+SLA2 20 35240721 35274619 - antisense 0.0
+HNRNPA3P2 20 35248806 35249826 + sense 0.0
+HNRNPA3P2 20 35248806 35249826 + antisense 0.0
+NDRG3 20 35280169 35374481 - sense 0.0
+NDRG3 20 35280169 35374481 - antisense 0.0
+Y_RNA 20 35296962 35297073 - sense 0.0
+Y_RNA 20 35296962 35297073 - antisense 0.0
+AL132768.1 20 35374459 35374533 + sense 0.0
+AL132768.1 20 35374459 35374533 + antisense 0.0
+DSN1 20 35380194 35402221 - sense 0.0
+DSN1 20 35380194 35402221 - antisense 0.0
+SOGA1 20 35405845 35492089 - sense 0.0
+SOGA1 20 35405845 35492089 - antisense 0.0
+RN7SL156P 20 35498502 35498793 + sense 0.0
+RN7SL156P 20 35498502 35498793 + antisense 0.0
+TLDC2 20 35504524 35522638 + sense 0.0
+TLDC2 20 35504524 35522638 + antisense 0.0
+SAMHD1 20 35518632 35580246 - sense 0.0
+SAMHD1 20 35518632 35580246 - antisense 0.0
+RBL1 20 35624752 35724398 - sense 0.0
+RBL1 20 35624752 35724398 - antisense 0.0
+RPS3AP3 20 35650146 35650387 - sense 0.0
+RPS3AP3 20 35650146 35650387 - antisense 0.0
+RPS27AP3 20 35677657 35678110 + sense 0.0
+RPS27AP3 20 35677657 35678110 + antisense 0.0
+RBL1 20 35724188 35725581 + sense 0.0
+RBL1 20 35724188 35725581 + antisense 0.0
+MROH8 20 35729629 35807991 - sense 0.0
+MROH8 20 35729629 35807991 - antisense 0.0
+RP3-343K2.4 20 35794177 35794715 - sense 0.0
+RP3-343K2.4 20 35794177 35794715 - antisense 0.0
+RPN2 20 35806813 35870022 + sense 0.0
+RPN2 20 35806813 35870022 + antisense 0.0
+GHRH 20 35879489 35890238 - sense 0.0
+GHRH 20 35879489 35890238 - antisense 0.0
+MANBAL 20 35918041 35945663 + sense 0.0
+MANBAL 20 35918041 35945663 + antisense 0.0
+SRC 20 35973088 36034453 + sense 0.0
+SRC 20 35973088 36034453 + antisense 0.0
+RPL7AP14 20 36073135 36073936 - sense 0.0
+RPL7AP14 20 36073135 36073936 - antisense 0.0
+BLCAP 20 36120874 36156333 - sense 0.0
+BLCAP 20 36120874 36156333 - antisense 0.0
+NNAT 20 36149617 36152092 + sense 0.0
+NNAT 20 36149617 36152092 + antisense 0.0
+PPIAP3 20 36158441 36158945 + sense 0.0
+PPIAP3 20 36158441 36158945 + antisense 0.0
+GLRXP 20 36231254 36231587 - sense 0.0
+GLRXP 20 36231254 36231587 - antisense 0.0
+LINC00489 20 36247700 36251521 - sense 0.0
+LINC00489 20 36247700 36251521 - antisense 0.0
+RP4-640H8.2 20 36305312 36311636 + sense 0.0
+RP4-640H8.2 20 36305312 36311636 + antisense 0.0
+CTNNBL1 20 36322408 36500531 + sense 0.0
+CTNNBL1 20 36322408 36500531 + antisense 0.0
+VSTM2L 20 36531499 36573752 + sense 0.0
+VSTM2L 20 36531499 36573752 + antisense 0.0
+RN7SKP185 20 36603558 36603883 - sense 0.0
+RN7SKP185 20 36603558 36603883 - antisense 0.0
+TTI1 20 36611409 36661870 - sense 0.0
+TTI1 20 36611409 36661870 - antisense 0.0
+RPRD1B 20 36661948 36720768 + sense 0.0
+RPRD1B 20 36661948 36720768 + antisense 0.0
+Y_RNA 20 36681049 36681148 - sense 0.0
+Y_RNA 20 36681049 36681148 - antisense 0.0
+RN7SL237P 20 36726798 36727102 - sense 0.0
+RN7SL237P 20 36726798 36727102 - antisense 0.0
+TGM2 20 36756863 36794980 - sense 0.0
+TGM2 20 36756863 36794980 - antisense 0.0
+KIAA1755 20 36838890 36889174 - sense 0.0
+KIAA1755 20 36838890 36889174 - antisense 0.0
+BPI 20 36888551 36965907 + sense 0.0
+BPI 20 36888551 36965907 + antisense 0.0
+CTD-2308N23.2 20 36916733 36954938 - sense 0.0
+CTD-2308N23.2 20 36916733 36954938 - antisense 0.0
+LBP 20 36974759 37005665 + sense 0.0
+LBP 20 36974759 37005665 + antisense 0.0
+RP4-564F22.5 20 37034658 37045444 - sense 0.0
+RP4-564F22.5 20 37034658 37045444 - antisense 0.0
+SNHG17 20 37049235 37063996 - sense 0.0
+SNHG17 20 37049235 37063996 - antisense 0.0
+SNORA71B 20 37053843 37053979 - sense 0.0
+SNORA71B 20 37053843 37053979 - antisense 0.0
+SNORA71A 20 37055952 37056085 - sense 0.0
+SNORA71A 20 37055952 37056085 - antisense 0.0
+SNORA71C 20 37058313 37058446 - sense 0.0
+SNORA71C 20 37058313 37058446 - antisense 0.0
+SNORA71D 20 37062508 37062641 - sense 0.0
+SNORA71D 20 37062508 37062641 - antisense 0.0
+SNORA71 20 37070679 37070812 + sense 0.0
+SNORA71 20 37070679 37070812 + antisense 0.0
+SNHG11 20 37075221 37079564 + sense 0.0
+SNHG11 20 37075221 37079564 + antisense 0.0
+SNORA60 20 37078013 37078146 + sense 0.0
+SNORA60 20 37078013 37078146 + antisense 0.0
+RALGAPB 20 37101459 37207504 + sense 0.0
+RALGAPB 20 37101459 37207504 + antisense 0.0
+MIR548O2 20 37145206 37145275 + sense 0.0
+MIR548O2 20 37145206 37145275 + antisense 0.0
+RPS3P2 20 37166401 37167101 + sense 0.0
+RPS3P2 20 37166401 37167101 + antisense 0.0
+ADIG 20 37209838 37217106 + sense 0.0
+ADIG 20 37209838 37217106 + antisense 0.0
+ARHGAP40 20 37230577 37279678 + sense 0.0
+ARHGAP40 20 37230577 37279678 + antisense 0.0
+RP5-1100H13.3 20 37243556 37244119 - sense 0.0
+RP5-1100H13.3 20 37243556 37244119 - antisense 0.0
+SLC32A1 20 37353105 37358015 + sense 0.0
+SLC32A1 20 37353105 37358015 + antisense 0.0
+ACTR5 20 37377085 37400834 + sense 0.0
+ACTR5 20 37377085 37400834 + antisense 0.0
+RN7SKP173 20 37390171 37390485 + sense 0.0
+RN7SKP173 20 37390171 37390485 + antisense 0.0
+PPP1R16B 20 37434348 37551667 + sense 0.0
+PPP1R16B 20 37434348 37551667 + antisense 0.0
+RN7SL116P 20 37501413 37501720 + sense 0.0
+RN7SL116P 20 37501413 37501720 + antisense 0.0
+FAM83D 20 37554955 37581703 + sense 0.0
+FAM83D 20 37554955 37581703 + antisense 0.0
+RP4-616B8.4 20 37590568 37590754 - sense 0.0
+RP4-616B8.4 20 37590568 37590754 - antisense 0.0
+DHX35 20 37590942 37668366 + sense 0.0
+DHX35 20 37590942 37668366 + antisense 0.0
+NPM1P19 20 37606354 37607065 - sense 0.0
+NPM1P19 20 37606354 37607065 - antisense 0.0
+RP4-705O1.1 20 37842420 37853391 - sense 0.0
+RP4-705O1.1 20 37842420 37853391 - antisense 0.0
+AL121588.1 20 37900183 37900258 + sense 0.0
+AL121588.1 20 37900183 37900258 + antisense 0.0
+ATG3P1 20 37957657 37958567 - sense 0.0
+ATG3P1 20 37957657 37958567 - antisense 0.0
+RN7SL680P 20 37977739 37978035 - sense 0.0
+RN7SL680P 20 37977739 37978035 - antisense 0.0
+RN7SL194P 20 37981402 37981674 + sense 0.0
+RN7SL194P 20 37981402 37981674 + antisense 0.0
+RP5-1031J8.1 20 38414363 38441871 + sense 0.0
+RP5-1031J8.1 20 38414363 38441871 + antisense 0.0
+HSPE1P1 20 38561564 38561881 - sense 0.0
+HSPE1P1 20 38561564 38561881 - antisense 0.0
+RP11-101E14.2 20 38633119 38637171 + sense 0.0
+RP11-101E14.2 20 38633119 38637171 + antisense 0.0
+RP11-101E14.3 20 38660227 38672531 + sense 0.0
+RP11-101E14.3 20 38660227 38672531 + antisense 0.0
+AL009050.1 20 38731860 38731998 - sense 0.0
+AL009050.1 20 38731860 38731998 - antisense 0.0
+RP1-191L6.2 20 38749682 38754998 + sense 0.0
+RP1-191L6.2 20 38749682 38754998 + antisense 0.0
+SNORD112 20 39045515 39045586 + sense 0.0
+SNORD112 20 39045515 39045586 + antisense 0.0
+MAFB 20 39314488 39317880 - sense 0.0
+MAFB 20 39314488 39317880 - antisense 0.0
+RP4-644L1.2 20 39326535 39327256 - sense 0.0
+RP4-644L1.2 20 39326535 39327256 - antisense 0.0
+RNA5SP484 20 39482759 39482869 - sense 0.0
+RNA5SP484 20 39482759 39482869 - antisense 0.0
+RNU2-52P 20 39652845 39653034 + sense 0.0
+RNU2-52P 20 39652845 39653034 + antisense 0.0
+TOP1 20 39657458 39753127 + sense 0.0
+TOP1 20 39657458 39753127 + antisense 0.0
+RP1-1J6.2 20 39726969 39766643 - sense 0.0
+RP1-1J6.2 20 39726969 39766643 - antisense 0.0
+PLCG1 20 39765600 39811629 + sense 0.0
+PLCG1 20 39765600 39811629 + antisense 0.0
+ZHX3 20 39807088 39946312 - sense 0.0
+ZHX3 20 39807088 39946312 - antisense 0.0
+RP3-511B24.6 20 39809096 39825427 + sense 0.0
+RP3-511B24.6 20 39809096 39825427 + antisense 0.0
+RP3-511B24.5 20 39825287 39825578 - sense 0.0
+RP3-511B24.5 20 39825287 39825578 - antisense 0.0
+RPL23AP81 20 39825331 39825797 + sense 0.0
+RPL23AP81 20 39825331 39825797 + antisense 0.0
+RN7SL615P 20 39918922 39919217 - sense 0.0
+RN7SL615P 20 39918922 39919217 - antisense 0.0
+RP3-450M14.1 20 39959763 39960300 + sense 0.0
+RP3-450M14.1 20 39959763 39960300 + antisense 0.0
+LPIN3 20 39969560 39989222 + sense 0.0
+LPIN3 20 39969560 39989222 + antisense 0.0
+EMILIN3 20 39988606 39995467 - sense 0.0
+EMILIN3 20 39988606 39995467 - antisense 0.0
+RP4-620E11.5 20 40011023 40011747 + sense 0.0
+RP4-620E11.5 20 40011023 40011747 + antisense 0.0
+CHD6 20 40030741 40247133 - sense 0.0
+CHD6 20 40030741 40247133 - antisense 0.0
+RP4-620E11.4 20 40087994 40090584 - sense 0.0
+RP4-620E11.4 20 40087994 40090584 - antisense 0.0
+RPL12P11 20 40176061 40176561 + sense 0.0
+RPL12P11 20 40176061 40176561 + antisense 0.0
+RNU6-1018P 20 40313625 40313730 - sense 0.0
+RNU6-1018P 20 40313625 40313730 - antisense 0.0
+Y_RNA 20 40328260 40328355 - sense 0.0
+Y_RNA 20 40328260 40328355 - antisense 0.0
+SNORA26 20 40341118 40341239 - sense 0.0
+SNORA26 20 40341118 40341239 - antisense 0.0
+RP5-1121H13.4 20 40619780 40692609 + sense 0.0
+RP5-1121H13.4 20 40619780 40692609 + antisense 0.0
+RP5-1121H13.1 20 40625771 40628037 - sense 0.0
+RP5-1121H13.1 20 40625771 40628037 - antisense 0.0
+RP5-1121H13.3 20 40642674 40644118 - sense 0.0
+RP5-1121H13.3 20 40642674 40644118 - antisense 0.0
+PTPRT 20 40701392 41818610 - sense 0.0
+PTPRT 20 40701392 41818610 - antisense 0.0
+RP4-730D4.1 20 41235334 41236199 + sense 0.0
+RP4-730D4.1 20 41235334 41236199 + antisense 0.0
+RP1-232N11.2 20 41314044 41317202 + sense 0.0
+RP1-232N11.2 20 41314044 41317202 + antisense 0.0
+RP4-753D4.2 20 41597383 41600132 + sense 0.0
+RP4-753D4.2 20 41597383 41600132 + antisense 0.0
+RN7SKP100 20 41691966 41692249 + sense 0.0
+RN7SKP100 20 41691966 41692249 + antisense 0.0
+RP1-269M15.3 20 41818862 41830011 + sense 0.0
+RP1-269M15.3 20 41818862 41830011 + antisense 0.0
+RN7SL666P 20 41850846 41851147 + sense 0.0
+RN7SL666P 20 41850846 41851147 + antisense 0.0
+PPIAP21 20 41859400 41859900 + sense 0.0
+PPIAP21 20 41859400 41859900 + antisense 0.0
+SCARNA15 20 41933195 41933319 + sense 0.0
+SCARNA15 20 41933195 41933319 + antisense 0.0
+RP5-862K6.4 20 42017282 42017681 - sense 0.0
+RP5-862K6.4 20 42017282 42017681 - antisense 0.0
+RNU6-743P 20 42034113 42034218 + sense 0.0
+RNU6-743P 20 42034113 42034218 + antisense 0.0
+EIF4EBP2P1 20 42051836 42052178 - sense 0.0
+EIF4EBP2P1 20 42051836 42052178 - antisense 0.0
+Y_RNA 20 42079799 42079900 - sense 0.0
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+SRSF6 20 42086568 42092245 + sense 0.0
+SRSF6 20 42086568 42092245 + antisense 0.0
+RNU6-1251P 20 42101653 42101759 + sense 0.0
+RNU6-1251P 20 42101653 42101759 + antisense 0.0
+L3MBTL1 20 42136320 42179590 + sense 0.0
+L3MBTL1 20 42136320 42179590 + antisense 0.0
+RP1-138B7.4 20 42151901 42152212 - sense 0.0
+RP1-138B7.4 20 42151901 42152212 - antisense 0.0
+RP1-138B7.5 20 42178029 42179589 - sense 0.0
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+SGK2 20 42187608 42216877 + sense 0.0
+SGK2 20 42187608 42216877 + antisense 0.0
+IFT52 20 42219571 42275936 + sense 0.0
+IFT52 20 42219571 42275936 + antisense 0.0
+RPL27AP 20 42281163 42281931 + sense 0.0
+RPL27AP 20 42281163 42281931 + antisense 0.0
+MYBL2 20 42295754 42345136 + sense 0.0
+MYBL2 20 42295754 42345136 + antisense 0.0
+GTSF1L 20 42354804 42355638 - sense 0.0
+GTSF1L 20 42354804 42355638 - antisense 0.0
+RNU6-639P 20 42425077 42425183 - sense 0.0
+RNU6-639P 20 42425077 42425183 - antisense 0.0
+RP5-1030M6.3 20 42523360 42524108 + sense 0.0
+RP5-1030M6.3 20 42523360 42524108 + antisense 0.0
+TOX2 20 42543504 42698256 + sense 0.0
+TOX2 20 42543504 42698256 + antisense 0.0
+RN7SL443P 20 42635888 42636178 + sense 0.0
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+JPH2 20 42740335 42816218 - sense 0.0
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+OSER1 20 42825136 42839431 - sense 0.0
+OSER1 20 42825136 42839431 - antisense 0.0
+OSER1-AS1 20 42839600 42854667 + sense 0.0
+OSER1-AS1 20 42839600 42854667 + antisense 0.0
+GDAP1L1 20 42875887 42909013 + sense 0.0
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+FITM2 20 42931478 42939809 - sense 0.0
+FITM2 20 42931478 42939809 - antisense 0.0
+R3HDML 20 42965626 42979875 + sense 0.0
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+Y_RNA 20 42973479 42973569 + sense 0.0
+Y_RNA 20 42973479 42973569 + antisense 0.0
+RP5-881L22.5 20 42976192 42983825 - sense 0.0
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+HNF4A 20 42984340 43061485 + sense 0.0
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+HNF4A-AS1 20 43001386 43024346 - sense 0.0
+HNF4A-AS1 20 43001386 43024346 - antisense 0.0
+RP5-881L22.6 20 43018264 43020177 - sense 0.0
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+MIR3646 20 43036760 43036843 + sense 0.0
+MIR3646 20 43036760 43036843 + antisense 0.0
+AL132772.1 20 43053692 43053781 - sense 0.0
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+RP5-1013A22.5 20 43062837 43063236 + sense 0.0
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+RP5-1013A22.2 20 43077417 43078732 - sense 0.0
+RP5-1013A22.2 20 43077417 43078732 - antisense 0.0
+C20orf62 20 43080624 43093984 - sense 0.0
+C20orf62 20 43080624 43093984 - antisense 0.0
+RPL37AP1 20 43095204 43095482 - sense 0.0
+RPL37AP1 20 43095204 43095482 - antisense 0.0
+TTPAL 20 43104526 43123244 + sense 0.0
+TTPAL 20 43104526 43123244 + antisense 0.0
+SERINC3 20 43124862 43150750 - sense 0.0
+SERINC3 20 43124862 43150750 - antisense 0.0
+PKIG 20 43160426 43252888 + sense 0.0
+PKIG 20 43160426 43252888 + antisense 0.0
+Z97053.1 20 43234346 43248126 - sense 0.0
+Z97053.1 20 43234346 43248126 - antisense 0.0
+ADA 20 43248163 43280874 - sense 0.0
+ADA 20 43248163 43280874 - antisense 0.0
+RP11-445H22.3 20 43285092 43324737 - sense 0.0
+RP11-445H22.3 20 43285092 43324737 - antisense 0.0
+RP11-445H22.4 20 43323533 43374662 - sense 0.0
+RP11-445H22.4 20 43323533 43374662 - antisense 0.0
+WISP2 20 43343485 43357150 + sense 0.0
+WISP2 20 43343485 43357150 + antisense 0.0
+KCNK15 20 43374421 43379675 + sense 0.0
+KCNK15 20 43374421 43379675 + antisense 0.0
+RIMS4 20 43380449 43438979 - sense 0.0
+RIMS4 20 43380449 43438979 - antisense 0.0
+RN7SL31P 20 43509479 43509775 - sense 0.0
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+YWHAB 20 43514317 43537173 + sense 0.0
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+PABPC1L 20 43538703 43587676 + sense 0.0
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+TOMM34 20 43570771 43589127 - sense 0.0
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+STK4-AS1 20 43592435 43595043 - sense 0.0
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+STK4 20 43595115 43708600 + sense 0.0
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+Y_RNA 20 43632989 43633095 + sense 0.0
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+KCNS1 20 43720951 43729753 - sense 0.0
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+WFDC5 20 43738093 43743813 - sense 0.0
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+WFDC12 20 43752066 43753106 - sense 0.0
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+PI3 20 43803517 43805185 + sense 0.0
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+SEMG1 20 43835638 43838413 + sense 0.0
+SEMG1 20 43835638 43838413 + antisense 0.0
+SEMG2 20 43849941 43853099 + sense 0.0
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+RP1-300I2.3 20 43858458 43858832 + sense 0.0
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+SLPI 20 43880880 43883205 - sense 0.0
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+MATN4 20 43922085 43937169 - sense 0.0
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+RBPJL 20 43935491 43945803 + sense 0.0
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+SDC4 20 43953928 43977064 - sense 0.0
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+SYS1 20 43990577 44005438 + sense 0.0
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+SYS1-DBNDD2 20 43991840 44039250 + sense 0.0
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+TP53TG5 20 44002526 44036529 - sense 0.0
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+DBNDD2 20 44034697 44039250 + sense 0.0
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+PIGT 20 44044717 44054884 + sense 0.0
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+AL031663.2 20 44074071 44077220 + sense 0.0
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+AL031663.1 20 44095910 44107452 - sense 0.0
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+WFDC2 20 44098346 44110172 + sense 0.0
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+SPINT3 20 44141101 44144264 - sense 0.0
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+EPPIN 20 44165625 44176391 - sense 0.0
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+EPPIN-WFDC6 20 44165625 44176065 - sense 0.0
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+HSPD1P21 20 44168622 44168866 - sense 0.0
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+WFDC8 20 44179792 44207965 - sense 0.0
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+CCNB1IP1P2 20 44196629 44197446 - sense 0.0
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+WFDC9 20 44236578 44259907 - sense 0.0
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+WFDC10A 20 44258165 44259835 + sense 0.0
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+RPS2P7 20 44269125 44270009 - sense 0.0
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+WFDC11 20 44277202 44298909 - sense 0.0
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+WFDC10B 20 44313292 44333658 - sense 0.0
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+WFDC13 20 44330655 44337456 + sense 0.0
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+MIR3617 20 44333741 44333819 - sense 0.0
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+SPINT4 20 44350990 44354469 + sense 0.0
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+HNRNPA1P3 20 44374376 44374926 - sense 0.0
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+WFDC3 20 44376583 44420571 - sense 0.0
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+SPINT5P 20 44378559 44378713 + sense 0.0
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+RNU6ATAC38P 20 44407337 44407462 + sense 0.0
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+DNTTIP1 20 44420576 44440066 + sense 0.0
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+UBE2C 20 44441215 44445596 + sense 0.0
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+TNNC2 20 44451853 44462384 - sense 0.0
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+SNX21 20 44462449 44471914 + sense 0.0
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+ACOT8 20 44470360 44486045 - sense 0.0
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+ZSWIM3 20 44486256 44507761 + sense 0.0
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+ZSWIM1 20 44509866 44513905 + sense 0.0
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+SPATA25 20 44515128 44516274 - sense 0.0
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+NEURL2 20 44517264 44519926 - sense 0.0
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+CTSA 20 44518783 44527459 + sense 0.0
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+RP3-337O18.9 20 44521333 44522058 - sense 0.0
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+PLTP 20 44527399 44540794 - sense 0.0
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+PCIF1 20 44563267 44576662 + sense 0.0
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+ZNF335 20 44577292 44600833 - sense 0.0
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+FTLP1 20 44603888 44604714 - sense 0.0
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+MMP9 20 44637547 44645200 + sense 0.0
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+RP11-465L10.10 20 44642141 44650712 - sense 0.0
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+AL162458.1 20 44644111 44644231 + sense 0.0
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+SLC12A5 20 44650356 44688784 + sense 0.0
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+NCOA5 20 44689624 44718591 - sense 0.0
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+RPL13P2 20 44728157 44728815 + sense 0.0
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+CD40 20 44746911 44758502 + sense 0.0
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+RP5-998H6.2 20 44797043 44799876 - sense 0.0
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+CDH22 20 44802372 44937137 - sense 0.0
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+SLC35C2 20 44978167 44993043 - sense 0.0
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+ELMO2 20 44994688 45061704 - sense 0.0
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+ZNF663P 20 45042867 45087915 - sense 0.0
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+MKRN7P 20 45092541 45093763 - sense 0.0
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+ZNF840 20 45113100 45121279 + sense 0.0
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+ZNF334 20 45129701 45142198 - sense 0.0
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+OCSTAMP 20 45169585 45179213 - sense 0.0
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+SLC13A3 20 45186463 45304714 - sense 0.0
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+TP53RK 20 45313004 45318418 - sense 0.0
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+RP1-28H20.3 20 45318298 45318928 + sense 0.0
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+SLC2A10 20 45338126 45364965 + sense 0.0
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+AL031055.1 20 45439477 45439561 - sense 0.0
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+RN7SKP33 20 45487972 45488311 + sense 0.0
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+RP11-323C15.1 20 45492202 45492743 - sense 0.0
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+EYA2 20 45523263 45817492 + sense 0.0
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+RP11-323C15.2 20 45529782 45530365 - sense 0.0
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+GAPDHP54 20 45626235 45627127 + sense 0.0
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+RP5-1050K3.3 20 45700504 45700875 + sense 0.0
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+RP5-890O15.3 20 45789477 45790339 - sense 0.0
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+MIR3616 20 45795609 45795700 + sense 0.0
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+ZMYND8 20 45837859 45985567 - sense 0.0
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+RN7SL243P 20 45936797 45937126 - sense 0.0
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+AL031666.1 20 45943269 45943336 - sense 0.0
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+AL031666.2 20 45947246 45949467 + sense 0.0
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+RP4-569M23.4 20 45976881 45977886 - sense 0.0
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+RP4-569M23.2 20 45981305 45983377 + sense 0.0
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+RP1-148H17.1 20 46020673 46041071 - sense 0.0
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+RPL35AP 20 46106958 46107754 - sense 0.0
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+NCOA3 20 46130601 46285621 + sense 0.0
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+AL021394.1 20 46199679 46199759 + sense 0.0
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+RP5-1049G16.4 20 46259010 46260182 - sense 0.0
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+SULF2 20 46285092 46415360 - sense 0.0
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+CTD-2653D5.1 20 46306645 46315041 + sense 0.0
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+RNU7-173P 20 46455713 46455788 - sense 0.0
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+RNA5SP486 20 46501935 46502017 + sense 0.0
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+RNU7-92P 20 46533092 46533167 + sense 0.0
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+RP11-347D21.3 20 46609232 46617488 - sense 0.0
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+RP11-347D21.4 20 46612148 46613057 + sense 0.0
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+SNORD36 20 46764686 46764766 - sense 0.0
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+LINC00494 20 46988693 46999372 + sense 0.0
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+RP1-66N13.1 20 47012066 47013638 - sense 0.0
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+PREX1 20 47240790 47444420 - sense 0.0
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+AL035106.1 20 47355867 47355985 - sense 0.0
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+ARFGEF2 20 47538427 47653230 + sense 0.0
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+SNAP23P 20 47654894 47655139 - sense 0.0
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+CSE1L 20 47662849 47713489 + sense 0.0
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+STAU1 20 47729878 47804904 - sense 0.0
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+ARPC3P1 20 47751017 47751549 + sense 0.0
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+DDX27 20 47835884 47860614 + sense 0.0
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+ZNFX1 20 47854483 47894963 - sense 0.0
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+ZFAS1 20 47894715 47905797 + sense 0.0
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+SNORD12C 20 47895477 47895565 + sense 0.0
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+SNORD12B 20 47896856 47896946 + sense 0.0
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+SNORD12 20 47897220 47897309 + sense 0.0
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+KCNB1 20 47980414 48099184 - sense 0.0
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+PTGIS 20 48120411 48184683 - sense 0.0
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+AL118525.1 20 48203218 48203311 + sense 0.0
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+B4GALT5 20 48249482 48330415 - sense 0.0
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+RNU6-919P 20 48411348 48411451 + sense 0.0
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+RNU7-72P 20 48444529 48444590 + sense 0.0
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+SPATA2 20 48519928 48532080 - sense 0.0
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+Y_RNA 20 48537134 48537231 - sense 0.0
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+RNF114 20 48552948 48570429 + sense 0.0
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+snoU13 20 48556833 48556937 - sense 0.0
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+KRT18P4 20 48573282 48574569 + sense 0.0
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+RNU6-147P 20 48588643 48588749 + sense 0.0
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+SNAI1 20 48599536 48605423 + sense 0.0
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+TRERNA1 20 48657253 48658041 - sense 0.0
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+TMEM189-UBE2V1 20 48697661 48770174 - sense 0.0
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+UBE2V1 20 48697661 48732496 - sense 0.0
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+TMEM189 20 48697663 48770335 - sense 0.0
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+RP11-112L6.3 20 48780001 48782639 - sense 0.0
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+CEBPB 20 48807376 48809212 + sense 0.0
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+RP11-290F20.3 20 48884023 48896332 + sense 0.0
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+RP11-290F20.1 20 48909257 48931459 + sense 0.0
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+RN7SL636P 20 49045729 49046020 - sense 0.0
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+COX6CP2 20 49096304 49096528 + sense 0.0
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+PTPN1 20 49126891 49201299 + sense 0.0
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+PARD6B 20 49348081 49373332 + sense 0.0
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+BCAS4 20 49411431 49493714 + sense 0.0
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+ADNP 20 49505585 49547958 - sense 0.0
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+DPM1 20 49551404 49575092 - sense 0.0
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+MOCS3 20 49575363 49577820 + sense 0.0
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+RPSAP1 20 49747325 49748204 - sense 0.0
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+AL035457.1 20 49794042 49794136 + sense 0.0
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+AL079339.1 20 49993772 49993858 - sense 0.0
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+NFATC2 20 50003494 50179370 - sense 0.0
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+MIR3194 20 50069442 50069514 - sense 0.0
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+RP5-827A12.2 20 50351072 50351606 + sense 0.0
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+SALL4 20 50400581 50419059 - sense 0.0
+SALL4 20 50400581 50419059 - antisense 0.0
+RP5-1112F19.2 20 50448336 50479451 - sense 0.0
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+RNU6-347P 20 50518830 50518934 + sense 0.0
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+RNU7-6P 20 50521508 50521569 + sense 0.0
+RNU7-6P 20 50521508 50521569 + antisense 0.0
+RN7SL603P 20 50557083 50557372 - sense 0.0
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+ZFP64 20 50668202 50820847 - sense 0.0
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+ERP29P1 20 50726883 50727588 - sense 0.0
+ERP29P1 20 50726883 50727588 - antisense 0.0
+RP4-723E3.1 20 50827184 51266970 + sense 0.0
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+RP4-583K8.1 20 51068003 51072158 - sense 0.0
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+RP5-1022J11.2 20 51104461 51117130 - sense 0.0
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+MRPS33P4 20 51127791 51128107 + sense 0.0
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+RP4-715N11.2 20 51288456 51307468 + sense 0.0
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+RP11-80K6.2 20 51474877 51479394 - sense 0.0
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+RPL36P1 20 51506701 51506925 + sense 0.0
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+TSHZ2 20 51588946 52111869 + sense 0.0
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+AL050316.1 20 51679156 51679240 + sense 0.0
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+RN7SKP184 20 51714191 51714523 + sense 0.0
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+RP11-15M15.1 20 51785182 51796089 - sense 0.0
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+RP4-678D15.1 20 51872518 52103813 - sense 0.0
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+RP4-669H2.1 20 52014199 52029448 - sense 0.0
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+PPIAP10 20 52037738 52038195 + sense 0.0
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+RP5-823G15.5 20 52069597 52120853 - sense 0.0
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+AL354993.1 20 52105495 52106164 + sense 0.0
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+Y_RNA 20 52161154 52161264 + sense 0.0
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+RP4-724E16.2 20 52169309 52191847 + sense 0.0
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+ZNF217 20 52183604 52226446 - sense 0.0
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+AC005808.3 20 52224893 52251129 + sense 0.0
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+SUMO1P1 20 52491791 52492096 - sense 0.0
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+PFDN4 20 52824386 52844591 + sense 0.0
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+DOK5 20 53092136 53267710 + sense 0.0
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+RNU4ATAC7P 20 53476227 53476351 - sense 0.0
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+CBLN4 20 54572496 54580528 - sense 0.0
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+RNA5SP487 20 54780108 54780229 - sense 0.0
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+MC3R 20 54823788 54824871 + sense 0.0
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+RP11-380D15.2 20 54842928 54844287 + sense 0.0
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+RP11-380D15.3 20 54871023 54874216 - sense 0.0
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+FAM210B 20 54933971 54943719 + sense 0.0
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+AURKA 20 54944445 54967393 - sense 0.0
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+CSTF1 20 54967427 54979518 + sense 0.0
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+CASS4 20 54987168 55034396 + sense 0.0
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+RPL39P 20 55034484 55034639 - sense 0.0
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+AL121914.1 20 55035322 55035413 - sense 0.0
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+RTFDC1 20 55043647 55093943 + sense 0.0
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+snoU13 20 55050699 55050801 + sense 0.0
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+GCNT7 20 55066548 55100981 - sense 0.0
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+FAM209A 20 55092243 55101198 + sense 0.0
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+AL109806.1 20 55097413 55097855 + sense 0.0
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+FAM209B 20 55108302 55111576 + sense 0.0
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+RP5-843L14.1 20 55152619 55173677 + sense 0.0
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+RPS4XP3 20 55176757 55177169 + sense 0.0
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+U3 20 55182733 55182849 + sense 0.0
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+TFAP2C 20 55204358 55214339 + sense 0.0
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+RNU6-1146P 20 55242486 55242587 + sense 0.0
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+RN7SL170P 20 55263457 55263749 + sense 0.0
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+PTMAP6 20 55275893 55276570 - sense 0.0
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+AL133232.1 20 55293942 55294025 + sense 0.0
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+RP5-897D18.1 20 55305453 55306516 + sense 0.0
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+RNU6-929P 20 55361037 55361143 - sense 0.0
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+AL117380.2 20 55575143 55575213 + sense 0.0
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+AL117380.1 20 55629846 55629897 + sense 0.0
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+RP11-560A15.4 20 55680797 55682184 + sense 0.0
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+RP11-560A15.3 20 55689971 55697148 + sense 0.0
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+BMP7 20 55743804 55841685 - sense 0.0
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+RP4-813D12.2 20 55789928 55790922 + sense 0.0
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+RP4-813D12.3 20 55841853 55858054 + sense 0.0
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+Y_RNA 20 55886910 55887014 + sense 0.0
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+MIR4325 20 55896558 55896647 - sense 0.0
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+RP3-481F12.1 20 55903602 55903752 + sense 0.0
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+SPO11 20 55904815 55919050 + sense 0.0
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+RAE1 20 55926066 55954267 + sense 0.0
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+MTND1P9 20 55932482 55933425 - sense 0.0
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+MTRNR2L3 20 55933496 55934878 - sense 0.0
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+RP4-800J21.3 20 55959216 55968118 - sense 0.0
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+RBM38 20 55966463 55984389 + sense 0.0
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+HMGB1P1 20 56063448 56064083 - sense 0.0
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+CTCFL 20 56071035 56100708 - sense 0.0
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+PCK1 20 56136136 56141513 + sense 0.0
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+ZBP1 20 56178902 56195632 - sense 0.0
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+PMEPA1 20 56223448 56286592 - sense 0.0
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+MIR4532 20 56470450 56470500 + sense 0.0
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+AL354984.1 20 56493940 56494091 + sense 0.0
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+RP13-379L11.2 20 56532182 56534716 - sense 0.0
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+AL354984.3 20 56551074 56551149 + sense 0.0
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+AL354984.2 20 56642512 56642663 + sense 0.0
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+RP13-379L11.3 20 56672323 56672647 + sense 0.0
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+C20orf85 20 56725960 56736206 + sense 0.0
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+ANKRD60 20 56793551 56803709 - sense 0.0
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+PPP4R1L 20 56806188 56884495 - sense 0.0
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+RAB22A 20 56884752 56942563 + sense 0.0
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+VAPB 20 56964178 57026157 + sense 0.0
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+APCDD1L 20 57034157 57090187 - sense 0.0
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+AL050327.1 20 57180140 57180283 + sense 0.0
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+MGC4294 20 57209828 57210772 + sense 0.0
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+STX16 20 57226328 57254582 + sense 0.0
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+STX16-NPEPL1 20 57226490 57290466 + sense 0.0
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+NPEPL1 20 57264187 57294294 + sense 0.0
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+RP11-261P9.4 20 57285851 57286689 + sense 0.0
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+PIEZO1P2 20 57315588 57358877 - sense 0.0
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+MIR296 20 57392187 57392780 - sense 0.0
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+MIR298 20 57393281 57393368 - sense 0.0
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+GNAS 20 57414773 57486247 + sense 0.0
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+NELFCD 20 57556263 57570188 + sense 0.0
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+CTSZ 20 57570240 57582302 - sense 0.0
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+TUBB1 20 57594309 57601709 + sense 0.0
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+ATP5E 20 57600522 57607437 - sense 0.0
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+SLMO2 20 57608200 57617964 - sense 0.0
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+MRPS16P2 20 57688279 57688686 + sense 0.0
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+ZNF831 20 57766075 57834168 + sense 0.0
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+EDN3 20 57875482 57901047 + sense 0.0
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+AL035250.1 20 57921434 57921535 - sense 0.0
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+PIEZO1P1 20 58035674 58035892 - sense 0.0
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+RP11-164D18.2 20 58090246 58091094 + sense 0.0
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+PHACTR3 20 58152564 58422766 + sense 0.0
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+SYCP2 20 58438618 58508710 - sense 0.0
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+FAM217B 20 58508819 58523735 + sense 0.0
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+PPP1R3D 20 58511894 58515352 - sense 0.0
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+CDH26 20 58533471 58609066 + sense 0.0
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+MIR4533 20 59053169 59053239 + sense 0.0
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+MIR548AG2 20 59139620 59139683 + sense 0.0
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+RP11-429E11.3 20 60292562 60294804 - sense 0.0
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+TAF4 20 60528525 60640866 - sense 0.0
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+MIR1257 20 60528602 60528718 - sense 0.0
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+hsa-mir-3195 20 60639858 60639941 + sense 0.0
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+LSM14B 20 60697517 60710434 + sense 0.0
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+PSMA7 20 60711791 60718496 - sense 0.0
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+HRH3 20 60790026 60795323 - sense 0.0
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+OSBPL2 20 60813580 60871268 + sense 0.0
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+ADRM1 20 60877149 60883918 + sense 0.0
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+LAMA5 20 60883011 60942368 - sense 0.0
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+CABLES2 20 60963688 60982341 - sense 0.0
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+RBBP8NL 20 60985293 61002589 - sense 0.0
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+LINC00686 20 61326376 61331832 - sense 0.0
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+NTSR1 20 61340189 61394123 + sense 0.0
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+LINC00659 20 61405480 61406764 - sense 0.0
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+MRGBP 20 61427805 61431945 + sense 0.0
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+OGFR-AS1 20 61431979 61436939 - sense 0.0
+OGFR-AS1 20 61431979 61436939 - antisense 0.0
+OGFR 20 61436187 61445352 + sense 0.0
+OGFR 20 61436187 61445352 + antisense 0.0
+COL9A3 20 61447596 61472511 + sense 0.0
+COL9A3 20 61447596 61472511 + antisense 0.0
+TCFL5 20 61472467 61493115 - sense 0.0
+TCFL5 20 61472467 61493115 - antisense 0.0
+DPH3P1 20 61476490 61477543 + sense 0.0
+DPH3P1 20 61476490 61477543 + antisense 0.0
+ARF4P2 20 61503602 61504428 - sense 0.0
+ARF4P2 20 61503602 61504428 - antisense 0.0
+DIDO1 20 61509090 61569304 - sense 0.0
+DIDO1 20 61509090 61569304 - antisense 0.0
+GID8 20 61569471 61576996 + sense 0.0
+GID8 20 61569471 61576996 + antisense 0.0
+SLC17A9 20 61584052 61599949 + sense 0.0
+SLC17A9 20 61584052 61599949 + antisense 0.0
+BHLHE23 20 61637331 61638387 - sense 0.0
+BHLHE23 20 61637331 61638387 - antisense 0.0
+RP11-305P22.9 20 61640735 61716423 + sense 0.0
+RP11-305P22.9 20 61640735 61716423 + antisense 0.0
+LINC00029 20 61665569 61668380 - sense 0.0
+LINC00029 20 61665569 61668380 - antisense 0.0
+LINC01056 20 61669363 61685215 + sense 0.0
+LINC01056 20 61669363 61685215 + antisense 0.0
+HAR1B 20 61726845 61733671 - sense 0.0
+HAR1B 20 61726845 61733671 - antisense 0.0
+HAR1A 20 61733483 61735738 + sense 0.0
+HAR1A 20 61733483 61735738 + antisense 0.0
+RP5-963E22.5 20 61758847 61760811 - sense 0.0
+RP5-963E22.5 20 61758847 61760811 - antisense 0.0
+RP5-963E22.4 20 61798149 61812255 - sense 0.0
+RP5-963E22.4 20 61798149 61812255 - antisense 0.0
+MIR124-3 20 61809852 61809938 + sense 0.0
+MIR124-3 20 61809852 61809938 + antisense 0.0
+YTHDF1 20 61826781 61847586 - sense 0.0
+YTHDF1 20 61826781 61847586 - antisense 0.0
+BIRC7 20 61867235 61871859 + sense 0.0
+BIRC7 20 61867235 61871859 + antisense 0.0
+MIR3196 20 61870131 61870194 + sense 0.0
+MIR3196 20 61870131 61870194 + antisense 0.0
+NKAIN4 20 61872136 61904046 - sense 0.0
+NKAIN4 20 61872136 61904046 - antisense 0.0
+ARFGAP1 20 61904137 61921142 + sense 0.0
+ARFGAP1 20 61904137 61921142 + antisense 0.0
+MIR4326 20 61918160 61918218 + sense 0.0
+MIR4326 20 61918160 61918218 + antisense 0.0
+COL20A1 20 61924538 61966203 + sense 0.0
+COL20A1 20 61924538 61966203 + antisense 0.0
+RNU6-994P 20 61968691 61968801 + sense 0.0
+RNU6-994P 20 61968691 61968801 + antisense 0.0
+CHRNA4 20 61975420 62009753 - sense 0.0
+CHRNA4 20 61975420 62009753 - antisense 0.0
+RP11-261N11.8 20 61991340 62002529 + sense 0.0
+RP11-261N11.8 20 61991340 62002529 + antisense 0.0
+KCNQ2 20 62037542 62103993 - sense 0.0
+KCNQ2 20 62037542 62103993 - antisense 0.0
+RP11-358D14.2 20 62079404 62080682 + sense 0.0
+RP11-358D14.2 20 62079404 62080682 + antisense 0.0
+EEF1A2 20 62119366 62130505 - sense 0.0
+EEF1A2 20 62119366 62130505 - antisense 0.0
+RP4-697K14.3 20 62133640 62136464 + sense 0.0
+RP4-697K14.3 20 62133640 62136464 + antisense 0.0
+PPDPF 20 62152077 62153559 + sense 0.0
+PPDPF 20 62152077 62153559 + antisense 0.0
+PTK6 20 62159778 62168723 - sense 0.0
+PTK6 20 62159778 62168723 - antisense 0.0
+SRMS 20 62172163 62178857 - sense 0.0
+SRMS 20 62172163 62178857 - antisense 0.0
+C20orf195 20 62184373 62188061 + sense 0.0
+C20orf195 20 62184373 62188061 + antisense 0.0
+HELZ2 20 62189439 62205592 - sense 0.0
+HELZ2 20 62189439 62205592 - antisense 0.0
+GMEB2 20 62218955 62258394 - sense 0.0
+GMEB2 20 62218955 62258394 - antisense 0.0
+CTD-3184A7.4 20 62258580 62260177 + sense 0.0
+CTD-3184A7.4 20 62258580 62260177 + antisense 0.0
+STMN3 20 62271061 62284780 - sense 0.0
+STMN3 20 62271061 62284780 - antisense 0.0
+RTEL1 20 62289163 62328416 + sense 0.0
+RTEL1 20 62289163 62328416 + antisense 0.0
+RTEL1-TNFRSF6B 20 62290653 62330037 + sense 0.0
+RTEL1-TNFRSF6B 20 62290653 62330037 + antisense 0.0
+TNFRSF6B 20 62328021 62330037 + sense 0.0
+TNFRSF6B 20 62328021 62330037 + antisense 0.0
+ARFRP1 20 62329996 62339377 - sense 0.0
+ARFRP1 20 62329996 62339377 - antisense 0.0
+ZGPAT 20 62338817 62367494 + sense 0.0
+ZGPAT 20 62338817 62367494 + antisense 0.0
+RP4-583P15.15 20 62340216 62370456 + sense 0.0
+RP4-583P15.15 20 62340216 62370456 + antisense 0.0
+LIME1 20 62366815 62370456 + sense 0.0
+LIME1 20 62366815 62370456 + antisense 0.0
+RP4-583P15.14 20 62369623 62371751 + sense 0.0
+RP4-583P15.14 20 62369623 62371751 + antisense 0.0
+SLC2A4RG 20 62371214 62374858 + sense 0.0
+SLC2A4RG 20 62371214 62374858 + antisense 0.0
+ZBTB46 20 62375019 62462597 - sense 0.0
+ZBTB46 20 62375019 62462597 - antisense 0.0
+RP4-583P15.10 20 62376042 62377311 + sense 0.0
+RP4-583P15.10 20 62376042 62377311 + antisense 0.0
+RP4-583P15.11 20 62439429 62447874 + sense 0.0
+RP4-583P15.11 20 62439429 62447874 + antisense 0.0
+AL158091.1 20 62474779 62475273 - sense 0.0
+AL158091.1 20 62474779 62475273 - antisense 0.0
+ABHD16B 20 62492566 62494341 + sense 0.0
+ABHD16B 20 62492566 62494341 + antisense 0.0
+C20ORF135 20 62492879 62493217 - sense 0.0
+C20ORF135 20 62492879 62493217 - antisense 0.0
+TPD52L2 20 62496596 62522898 + sense 0.0
+TPD52L2 20 62496596 62522898 + antisense 0.0
+DNAJC5 20 62526518 62567384 + sense 0.0
+DNAJC5 20 62526518 62567384 + antisense 0.0
+RNU1-134P 20 62540308 62540472 + sense 0.0
+RNU1-134P 20 62540308 62540472 + antisense 0.0
+MIR941-2 20 62550834 62550950 + sense 0.0
+MIR941-2 20 62550834 62550950 + antisense 0.0
+MIR941-3 20 62551085 62551201 + sense 0.0
+MIR941-3 20 62551085 62551201 + antisense 0.0
+MIR941-1 20 62551365 62551481 + sense 0.0
+MIR941-1 20 62551365 62551481 + antisense 0.0
+UCKL1 20 62571186 62587769 - sense 0.0
+UCKL1 20 62571186 62587769 - antisense 0.0
+MIR1914 20 62572818 62572897 - sense 0.0
+MIR1914 20 62572818 62572897 - antisense 0.0
+MIR647 20 62573984 62574079 - sense 0.0
+MIR647 20 62573984 62574079 - antisense 0.0
+AL118506.1 20 62585007 62585495 + sense 0.0
+AL118506.1 20 62585007 62585495 + antisense 0.0
+ZNF512B 20 62588055 62680113 - sense 0.0
+ZNF512B 20 62588055 62680113 - antisense 0.0
+SAMD10 20 62605466 62611361 - sense 0.0
+SAMD10 20 62605466 62611361 - antisense 0.0
+PRPF6 20 62612488 62664453 + sense 0.0
+PRPF6 20 62612488 62664453 + antisense 0.0
+LINC00176 20 62665697 62671315 + sense 0.0
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+SOX18 20 62679076 62680994 - sense 0.0
+SOX18 20 62679076 62680994 - antisense 0.0
+TCEA2 20 62681189 62703700 + sense 0.0
+TCEA2 20 62681189 62703700 + antisense 0.0
+RP13-152O15.5 20 62688156 62688437 + sense 0.0
+RP13-152O15.5 20 62688156 62688437 + antisense 0.0
+RGS19 20 62704534 62711323 - sense 0.0
+RGS19 20 62704534 62711323 - antisense 0.0
+OPRL1 20 62711526 62731996 + sense 0.0
+OPRL1 20 62711526 62731996 + antisense 0.0
+C20orf201 20 62714733 62715712 - sense 0.0
+C20orf201 20 62714733 62715712 - antisense 0.0
+NPBWR2 20 62737173 62738524 - sense 0.0
+NPBWR2 20 62737173 62738524 - antisense 0.0
+MYT1 20 62783144 62873604 + sense 0.0
+MYT1 20 62783144 62873604 + antisense 0.0
+PCMTD2 20 62887094 62926855 + sense 0.0
+PCMTD2 20 62887094 62926855 + antisense 0.0
+CICP4 20 62921540 62924351 - sense 0.0
+CICP4 20 62921540 62924351 - antisense 0.0
+LINC00266-1 20 62921738 62944485 + sense 0.0
+LINC00266-1 20 62921738 62944485 + antisense 0.0
diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv
new file mode 100644
index 00000000000..323576500d0
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv
@@ -0,0 +1,2637 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3
+gene_label contig start stop strand sense_antisense NA12878.star_counts
+DEFB125 20 67891 77735 + sense 0.0
+DEFB125 20 67891 77735 + antisense 0.0
+DEFB126 20 123010 126392 + sense 0.0
+DEFB126 20 123010 126392 + antisense 0.0
+DEFB127 20 138111 139804 + sense 0.0
+DEFB127 20 138111 139804 + antisense 0.0
+DEFB128 20 168494 170322 - sense 0.0
+DEFB128 20 168494 170322 - antisense 0.0
+AL360078.1 20 172864 172940 - sense 0.0
+AL360078.1 20 172864 172940 - antisense 0.0
+DEFB129 20 207899 210527 + sense 0.0
+DEFB129 20 207899 210527 + antisense 0.0
+DEFB132 20 238377 241737 + sense 0.0
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+RP5-1103G7.10 20 247827 249498 + sense 0.0
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+C20orf96 20 251504 271390 - sense 0.0
+C20orf96 20 251504 271390 - antisense 0.0
+ZCCHC3 20 277737 280965 + sense 0.0
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+AL034548.1 20 278214 280961 + sense 0.0
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+RP5-1103G7.4 20 300957 328868 - sense 0.0
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+SOX12 20 306207 310865 + sense 0.0
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+NRSN2 20 327426 340304 + sense 0.0
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+TRIB3 20 361261 378203 + sense 0.0
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+RBCK1 20 388142 411610 + sense 0.0
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+TBC1D20 20 416124 443197 - sense 0.0
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+Y_RNA 20 431307 431406 + sense 0.0
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+CSNK2A1 20 459116 524465 - sense 0.0
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+TCF15 20 584441 591042 - sense 0.0
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+SRXN1 20 627259 634014 - sense 0.0
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+RP5-850E9.3 20 627270 656444 - sense 0.0
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+SCRT2 20 642240 656823 - sense 0.0
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+SLC52A3 20 740724 749131 - sense 0.0
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+FAM110A 20 814358 838106 + sense 0.0
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+RPS10L 20 820090 820620 - sense 0.0
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+ANGPT4 20 853296 896977 - sense 0.0
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+RSPO4 20 939095 982907 - sense 0.0
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+PSMF1 20 1093906 1160596 + sense 0.0
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+ACTG1P3 20 1141228 1142341 + sense 0.0
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+TMEM74B 20 1161205 1166059 - sense 0.0
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+C20orf202 20 1184098 1188918 + sense 0.0
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+RAD21L1 20 1206700 1277065 + sense 0.0
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+SNPH 20 1246960 1289972 + sense 0.0
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+SDCBP2 20 1290619 1309883 - sense 0.0
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+SDCBP2-AS1 20 1306049 1359378 + sense 0.0
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+AL136531.1 20 1316228 1317555 - sense 0.0
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+RP11-314N13.3 20 1342266 1343229 + sense 0.0
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+FKBP1A 20 1349622 1373806 - sense 0.0
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+NSFL1C 20 1422807 1454487 - sense 0.0
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+SIRPB2 20 1451386 1472233 - sense 0.0
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+AL109658.1 20 1469195 1469292 + sense 0.0
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+RP4-576H24.2 20 1497405 1538299 - sense 0.0
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+RNU6-917P 20 1509702 1509805 - sense 0.0
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+SIRPD 20 1514897 1539489 - sense 0.0
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+RP4-576H24.4 20 1520790 1600655 - sense 0.0
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+SIRPB1 20 1544167 1600707 - sense 0.0
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+SIRPG 20 1609798 1638425 - sense 0.0
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+RP11-77C3.3 20 1614154 1629118 + sense 0.0
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+SIRPB3P 20 1645929 1688846 - sense 0.0
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+RN7SL561P 20 1647006 1647284 + sense 0.0
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+RP4-673D20.5 20 1657308 1657553 - sense 0.0
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+RP4-673D20.4 20 1702691 1703183 - sense 0.0
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+RP4-673D20.6 20 1737402 1739586 - sense 0.0
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+RP4-673D20.3 20 1748603 1760641 - sense 0.0
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+RP5-968J1.1 20 1784662 1798252 - sense 0.0
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+SIRPA 20 1875154 1920543 + sense 0.0
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+RP4-684O24.5 20 1927892 1988163 + sense 0.0
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+PDYN 20 1959403 1974732 - sense 0.0
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+RPL7P2 20 2056201 2056468 + sense 0.0
+RPL7P2 20 2056201 2056468 + antisense 0.0
+STK35 20 2082257 2157684 + sense 0.0
+STK35 20 2082257 2157684 + antisense 0.0
+AL121899.1 20 2137858 2137927 - sense 0.0
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+RP11-128M1.1 20 2187863 2193797 + sense 0.0
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+TGM3 20 2276647 2321724 + sense 0.0
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+TGM6 20 2361554 2413399 + sense 0.0
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+Y_RNA 20 2433656 2433763 - sense 0.0
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+SNRPB 20 2442280 2451499 - sense 30.53
+SNRPB 20 2442280 2451499 - antisense 559.53
+SNORD119 20 2443608 2443683 - sense 0.0
+SNORD119 20 2443608 2443683 - antisense 0.0
+RP4-734P14.4 20 2447858 2489553 - sense 20.63
+RP4-734P14.4 20 2447858 2489553 - antisense 284.74
+ZNF343 20 2462463 2505348 - sense 10.31
+ZNF343 20 2462463 2505348 - antisense 263.29
+TMC2 20 2517253 2622430 + sense 1.6
+TMC2 20 2517253 2622430 + antisense 0.0
+NOP56 20 2632791 2639039 + sense 113.51
+NOP56 20 2632791 2639039 + antisense 2053.54
+MIR1292 20 2633423 2633488 + sense 0.05
+MIR1292 20 2633423 2633488 + antisense 1.58
+SNORD110 20 2634858 2634932 + sense 0.0
+SNORD110 20 2634858 2634932 + antisense 10.78
+SNORA51 20 2635713 2635844 + sense 1.02
+SNORA51 20 2635713 2635844 + antisense 6.12
+SNORD86 20 2636743 2636828 + sense 2.5
+SNORD86 20 2636743 2636828 + antisense 42.72
+SNORD56 20 2637270 2637340 + sense 0.35
+SNORD56 20 2637270 2637340 + antisense 5.53
+SNORD57 20 2637585 2637656 + sense 0.98
+SNORD57 20 2637585 2637656 + antisense 9.69
+IDH3B 20 2639041 2644865 - sense 0.0
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+RP4-686C3.7 20 2644998 2646520 + sense 0.0
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+EBF4 20 2673524 2740753 + sense 0.0
+EBF4 20 2673524 2740753 + antisense 0.0
+AL035460.1 20 2677351 2677781 + sense 0.0
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+RPL19P1 20 2761260 2761687 + sense 0.0
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+TMEM239 20 2795614 2798712 + sense 0.0
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+TMEM239 20 2795614 2800930 + sense 0.0
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+C20orf141 20 2795633 2796479 + sense 0.0
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+PCED1A 20 2815960 2821836 - sense 0.0
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+VPS16 20 2821349 2847378 + sense 0.0
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+PTPRA 20 2844830 3019722 + sense 0.0
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+GNRH2 20 3024268 3026393 + sense 0.0
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+MRPS26 20 3026591 3028900 + sense 0.0
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+OXT 20 3052266 3053163 + sense 0.0
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+AVP 20 3063202 3065370 - sense 0.0
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+RN7SL555P 20 3074861 3075153 + sense 0.0
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+UBOX5-AS1 20 3087559 3131513 + sense 0.0
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+UBOX5 20 3088219 3140842 - sense 0.0
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+FASTKD5 20 3127165 3140543 - sense 0.0
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+LZTS3 20 3143263 3154192 - sense 0.0
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+DDRGK1 20 3170996 3185331 - sense 0.0
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+ITPA 20 3189514 3204516 + sense 0.0
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+SLC4A11 20 3208063 3219836 - sense 0.0
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+C20orf194 20 3229951 3388272 - sense 0.0
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+RN7SL839P 20 3261065 3261355 + sense 0.0
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+RNU6-1019P 20 3340683 3340789 + sense 0.0
+RNU6-1019P 20 3340683 3340789 + antisense 0.0
+UBE2V1P1 20 3342527 3342971 - sense 0.0
+UBE2V1P1 20 3342527 3342971 - antisense 0.0
+U3 20 3364876 3365086 + sense 0.0
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+AL117334.1 20 3384863 3384932 + sense 0.0
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+RP11-137F15.1 20 3445824 3446091 - sense 0.0
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+ATRN 20 3451687 3631769 + sense 0.0
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+SF3A3P1 20 3470176 3471652 - sense 0.0
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+AL109805.1 20 3487654 3487759 + sense 0.0
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+GFRA4 20 3639939 3644046 - sense 0.0
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+ADAM33 20 3648612 3662893 - sense 0.0
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+SIGLEC1 20 3667617 3687775 - sense 0.0
+SIGLEC1 20 3667617 3687775 - antisense 0.0
+HSPA12B 20 3713314 3733758 + sense 0.0
+HSPA12B 20 3713314 3733758 + antisense 0.0
+C20orf27 20 3734155 3749034 - sense 0.0
+C20orf27 20 3734155 3749034 - antisense 0.0
+SPEF1 20 3758151 3762095 - sense 0.0
+SPEF1 20 3758151 3762095 - antisense 0.0
+CENPB 20 3764498 3767337 - sense 0.0
+CENPB 20 3764498 3767337 - antisense 0.0
+CDC25B 20 3767578 3786762 + sense 0.0
+CDC25B 20 3767578 3786762 + antisense 0.0
+AP5S1 20 3801178 3805949 + sense 0.0
+AP5S1 20 3801178 3805949 + antisense 0.0
+MAVS 20 3827487 3849280 + sense 0.0
+MAVS 20 3827487 3849280 + antisense 0.0
+RP11-119B16.2 20 3868886 3869515 - sense 0.0
+RP11-119B16.2 20 3868886 3869515 - antisense 0.0
+PANK2 20 3869486 3907605 + sense 0.0
+PANK2 20 3869486 3907605 + antisense 0.0
+MIR103A2 20 3898141 3898218 + sense 0.0
+MIR103A2 20 3898141 3898218 + antisense 0.0
+RNF24 20 3907956 3996229 - sense 0.0
+RNF24 20 3907956 3996229 - antisense 0.0
+FTLP3 20 4004552 4005091 + sense 0.0
+FTLP3 20 4004552 4005091 + antisense 0.0
+RPL21P2 20 4040280 4040760 - sense 0.0
+RPL21P2 20 4040280 4040760 - antisense 0.0
+RP11-352D3.2 20 4050799 4055812 - sense 0.0
+RP11-352D3.2 20 4050799 4055812 - antisense 0.0
+SMOX 20 4101627 4168394 + sense 0.0
+SMOX 20 4101627 4168394 + antisense 0.0
+RP4-779E11.3 20 4173712 4176590 + sense 0.0
+RP4-779E11.3 20 4173712 4176590 + antisense 0.0
+ADRA1D 20 4201329 4229721 - sense 0.0
+ADRA1D 20 4201329 4229721 - antisense 0.0
+RP11-307O10.1 20 4411808 4412320 - sense 0.0
+RP11-307O10.1 20 4411808 4412320 - antisense 0.0
+RP5-1164C1.2 20 4456285 4505846 + sense 0.0
+RP5-1164C1.2 20 4456285 4505846 + antisense 0.0
+RPL7AL2 20 4571639 4571946 - sense 0.0
+RPL7AL2 20 4571639 4571946 - antisense 0.0
+RPS4XP2 20 4610073 4610865 - sense 0.0
+RPS4XP2 20 4610073 4610865 - antisense 0.0
+PRNP 20 4666882 4682236 + sense 0.0
+PRNP 20 4666882 4682236 + antisense 0.0
+PRND 20 4702556 4709106 + sense 0.0
+PRND 20 4702556 4709106 + antisense 0.0
+PRNT 20 4711928 4721314 - sense 0.0
+PRNT 20 4711928 4721314 - antisense 0.0
+RP5-1068H6.1 20 4716315 4717319 - sense 0.0
+RP5-1068H6.1 20 4716315 4717319 - antisense 0.0
+RASSF2 20 4760669 4804291 - sense 0.0
+RASSF2 20 4760669 4804291 - antisense 0.0
+SLC23A2 20 4833002 4990939 - sense 0.0
+SLC23A2 20 4833002 4990939 - antisense 0.0
+SNORA31 20 4849630 4849764 + sense 0.0
+SNORA31 20 4849630 4849764 + antisense 0.0
+snoU13 20 4863030 4863122 + sense 0.0
+snoU13 20 4863030 4863122 + antisense 0.0
+RP5-1116H23.1 20 4994166 4994370 - sense 0.0
+RP5-1116H23.1 20 4994166 4994370 - antisense 0.0
+RN7SL514P 20 5006365 5006628 + sense 0.0
+RN7SL514P 20 5006365 5006628 + antisense 0.0
+RNA5SP474 20 5079033 5079122 - sense 0.0
+RNA5SP474 20 5079033 5079122 - antisense 0.0
+TMEM230 20 5080486 5093749 - sense 0.0
+TMEM230 20 5080486 5093749 - antisense 0.0
+Y_RNA 20 5094639 5094729 - sense 0.0
+Y_RNA 20 5094639 5094729 - antisense 0.0
+PCNA 20 5095599 5107272 - sense 0.0
+PCNA 20 5095599 5107272 - antisense 0.0
+SNORA26 20 5102063 5102185 - sense 0.0
+SNORA26 20 5102063 5102185 - antisense 0.0
+CDS2 20 5107432 5178533 + sense 0.0
+CDS2 20 5107432 5178533 + antisense 0.0
+UBE2D3P1 20 5273034 5273477 - sense 0.0
+UBE2D3P1 20 5273034 5273477 - antisense 0.0
+PROKR2 20 5282317 5297378 - sense 0.0
+PROKR2 20 5282317 5297378 - antisense 0.0
+RNA5-8SP7 20 5326652 5326806 - sense 0.0
+RNA5-8SP7 20 5326652 5326806 - antisense 0.0
+LINC00658 20 5407541 5451740 - sense 0.0
+LINC00658 20 5407541 5451740 - antisense 0.0
+RP5-828H9.1 20 5451853 5455828 + sense 0.0
+RP5-828H9.1 20 5451853 5455828 + antisense 0.0
+LINC00654 20 5476713 5485259 - sense 0.0
+LINC00654 20 5476713 5485259 - antisense 0.0
+RP5-1022P6.7 20 5479762 5483527 + sense 0.0
+RP5-1022P6.7 20 5479762 5483527 + antisense 0.0
+RP5-1022P6.4 20 5488521 5490648 - sense 0.0
+RP5-1022P6.4 20 5488521 5490648 - antisense 0.0
+RPS18P1 20 5513524 5513981 + sense 0.0
+RPS18P1 20 5513524 5513981 + antisense 0.0
+RP5-1022P6.5 20 5514274 5516535 + sense 0.0
+RP5-1022P6.5 20 5514274 5516535 + antisense 0.0
+GPCPD1 20 5525085 5591672 - sense 0.0
+GPCPD1 20 5525085 5591672 - antisense 0.0
+RP5-1022P6.3 20 5529486 5530127 + sense 0.0
+RP5-1022P6.3 20 5529486 5530127 + antisense 0.0
+C20orf196 20 5731039 5844558 + sense 0.0
+C20orf196 20 5731039 5844558 + antisense 0.0
+RNU1-55P 20 5870701 5870858 + sense 0.0
+RNU1-55P 20 5870701 5870858 + antisense 0.0
+CHGB 20 5892076 5906007 + sense 0.0
+CHGB 20 5892076 5906007 + antisense 0.0
+RP5-967N21.2 20 5908731 5909964 - sense 0.0
+RP5-967N21.2 20 5908731 5909964 - antisense 0.0
+TRMT6 20 5917881 5931182 - sense 0.0
+TRMT6 20 5917881 5931182 - antisense 0.0
+MCM8 20 5931298 5975852 + sense 0.0
+MCM8 20 5931298 5975852 + antisense 0.0
+Y_RNA 20 5945184 5945296 + sense 0.0
+Y_RNA 20 5945184 5945296 + antisense 0.0
+RP5-967N21.7 20 5945826 5946157 + sense 0.0
+RP5-967N21.7 20 5945826 5946157 + antisense 0.0
+RN7SL498P 20 5982379 5982674 + sense 0.0
+RN7SL498P 20 5982379 5982674 + antisense 0.0
+CRLS1 20 5986736 6020699 + sense 0.0
+CRLS1 20 5986736 6020699 + antisense 0.0
+LRRN4 20 6021424 6034695 - sense 0.0
+LRRN4 20 6021424 6034695 - antisense 0.0
+FERMT1 20 6055492 6104191 - sense 0.0
+FERMT1 20 6055492 6104191 - antisense 0.0
+TARDBPP1 20 6181636 6182838 - sense 0.0
+TARDBPP1 20 6181636 6182838 - antisense 0.0
+RP4-775C13.1 20 6194346 6196028 + sense 0.0
+RP4-775C13.1 20 6194346 6196028 + antisense 0.0
+RP4-775C13.2 20 6199846 6200090 + sense 0.0
+RP4-775C13.2 20 6199846 6200090 + antisense 0.0
+AL109618.1 20 6209441 6209595 - sense 0.0
+AL109618.1 20 6209441 6209595 - antisense 0.0
+CASC20 20 6427370 6509106 + sense 0.0
+CASC20 20 6427370 6509106 + antisense 0.0
+RP5-859D4.3 20 6711905 6716783 - sense 0.0
+RP5-859D4.3 20 6711905 6716783 - antisense 0.0
+BMP2 20 6748311 6760927 + sense 0.0
+BMP2 20 6748311 6760927 + antisense 0.0
+snoR26 20 6841661 6841755 + sense 0.0
+snoR26 20 6841661 6841755 + antisense 0.0
+RP4-764O22.1 20 7050261 7127303 + sense 0.0
+RP4-764O22.1 20 7050261 7127303 + antisense 0.0
+RP4-764O22.2 20 7127114 7234849 - sense 0.0
+RP4-764O22.2 20 7127114 7234849 - antisense 0.0
+RP11-19D2.1 20 7237227 7238861 - sense 0.0
+RP11-19D2.1 20 7237227 7238861 - antisense 0.0
+RP11-19D2.2 20 7282703 7288079 - sense 0.0
+RP11-19D2.2 20 7282703 7288079 - antisense 0.0
+RP5-988G17.1 20 7328114 7348279 + sense 0.0
+RP5-988G17.1 20 7328114 7348279 + antisense 0.0
+RN7SL547P 20 7614211 7614498 - sense 0.0
+RN7SL547P 20 7614211 7614498 - antisense 0.0
+AL031653.1 20 7677533 7677624 - sense 0.0
+AL031653.1 20 7677533 7677624 - antisense 0.0
+RP5-836E8.1 20 7812445 7812969 - sense 0.0
+RP5-836E8.1 20 7812445 7812969 - antisense 0.0
+HAO1 20 7863628 7921121 - sense 0.0
+HAO1 20 7863628 7921121 - antisense 0.0
+TMX4 20 7957995 8000476 - sense 0.0
+TMX4 20 7957995 8000476 - antisense 0.0
+RP5-971N18.3 20 7999870 8024159 + sense 0.0
+RP5-971N18.3 20 7999870 8024159 + antisense 0.0
+PHKBP1 20 8078471 8080421 - sense 0.0
+PHKBP1 20 8078471 8080421 - antisense 0.0
+PLCB1 20 8112824 8949003 + sense 0.0
+PLCB1 20 8112824 8949003 + antisense 0.0
+PLCB1-IT1 20 8229351 8237564 + sense 0.0
+PLCB1-IT1 20 8229351 8237564 + antisense 0.0
+AL031655.1 20 8589827 8589912 + sense 0.0
+AL031655.1 20 8589827 8589912 + antisense 0.0
+AL031655.2 20 8590801 8590887 - sense 0.0
+AL031655.2 20 8590801 8590887 - antisense 0.0
+RNU105B 20 8811833 8812040 + sense 0.0
+RNU105B 20 8811833 8812040 + antisense 0.0
+RP5-859I17.2 20 8910542 8910685 - sense 0.0
+RP5-859I17.2 20 8910542 8910685 - antisense 0.0
+AL121898.1 20 9047481 9047555 - sense 0.0
+AL121898.1 20 9047481 9047555 - antisense 0.0
+PLCB4 20 9049410 9461889 + sense 0.0
+PLCB4 20 9049410 9461889 + antisense 0.0
+RP5-1119D9.4 20 9485827 9495645 - sense 0.0
+RP5-1119D9.4 20 9485827 9495645 - antisense 0.0
+LAMP5 20 9495005 9511171 + sense 0.0
+LAMP5 20 9495005 9511171 + antisense 0.0
+PAK7 20 9518036 9819689 - sense 0.0
+PAK7 20 9518036 9819689 - antisense 0.0
+RP5-986I17.2 20 9556255 9558336 + sense 0.0
+RP5-986I17.2 20 9556255 9558336 + antisense 0.0
+RP5-839B4.8 20 9966736 9987764 + sense 0.0
+RP5-839B4.8 20 9966736 9987764 + antisense 0.0
+ANKEF1 20 9966774 10037410 + sense 0.0
+ANKEF1 20 9966774 10037410 + antisense 0.0
+SNAP25-AS1 20 10002620 10349424 - sense 0.0
+SNAP25-AS1 20 10002620 10349424 - antisense 0.0
+AL109754.1 20 10036968 10037063 + sense 0.0
+AL109754.1 20 10036968 10037063 + antisense 0.0
+RP11-416N4.4 20 10154168 10177638 + sense 0.0
+RP11-416N4.4 20 10154168 10177638 + antisense 0.0
+RP11-416N4.1 20 10160883 10166423 + sense 0.0
+RP11-416N4.1 20 10160883 10166423 + antisense 0.0
+SNAP25 20 10199478 10288066 + sense 0.0
+SNAP25 20 10199478 10288066 + antisense 0.0
+HIGD1AP15 20 10315067 10315346 + sense 0.0
+HIGD1AP15 20 10315067 10315346 + antisense 0.0
+RPL23AP6 20 10329805 10330276 - sense 0.0
+RPL23AP6 20 10329805 10330276 - antisense 0.0
+AL023913.1 20 10342736 10342878 - sense 0.0
+AL023913.1 20 10342736 10342878 - antisense 0.0
+SDAD1P2 20 10366427 10368454 + sense 0.0
+SDAD1P2 20 10366427 10368454 + antisense 0.0
+MKKS 20 10381657 10414870 - sense 0.0
+MKKS 20 10381657 10414870 - antisense 0.0
+SLX4IP 20 10415951 10617477 + sense 0.0
+SLX4IP 20 10415951 10617477 + antisense 0.0
+RP5-1099D15.1 20 10593509 10594877 - sense 0.0
+RP5-1099D15.1 20 10593509 10594877 - antisense 0.0
+JAG1 20 10618332 10654694 - sense 0.0
+JAG1 20 10618332 10654694 - antisense 0.0
+JAG1 20 10625847 10627014 - sense 0.0
+JAG1 20 10625847 10627014 - antisense 0.0
+RP11-103J8.1 20 10653576 10975572 + sense 0.0
+RP11-103J8.1 20 10653576 10975572 + antisense 0.0
+RP1-278O22.1 20 10733738 10734614 + sense 0.0
+RP1-278O22.1 20 10733738 10734614 + antisense 0.0
+RP1-278O22.2 20 10733926 10745934 - sense 0.0
+RP1-278O22.2 20 10733926 10745934 - antisense 0.0
+RP4-697P8.3 20 10855981 10889920 - sense 0.0
+RP4-697P8.3 20 10855981 10889920 - antisense 0.0
+FAT1P1 20 10869230 10869736 - sense 0.0
+FAT1P1 20 10869230 10869736 - antisense 0.0
+RP11-103J8.2 20 10981952 10982411 + sense 0.0
+RP11-103J8.2 20 10981952 10982411 + antisense 0.0
+C20orf187 20 11008408 11010014 + sense 0.0
+C20orf187 20 11008408 11010014 + antisense 0.0
+RP4-734C18.1 20 11214818 11282173 - sense 0.0
+RP4-734C18.1 20 11214818 11282173 - antisense 0.0
+RPS11P1 20 11326031 11326503 - sense 0.0
+RPS11P1 20 11326031 11326503 - antisense 0.0
+RP5-1128N12.2 20 11589084 11589696 - sense 0.0
+RP5-1128N12.2 20 11589084 11589696 - antisense 0.0
+PGAM3P 20 11601699 11602125 + sense 0.0
+PGAM3P 20 11601699 11602125 + antisense 0.0
+RP11-268G13.1 20 11665792 11667971 - sense 0.0
+RP11-268G13.1 20 11665792 11667971 - antisense 0.0
+LINC00687 20 11781111 11851363 - sense 0.0
+LINC00687 20 11781111 11851363 - antisense 0.0
+AL080274.1 20 11790813 11791095 - sense 0.0
+AL080274.1 20 11790813 11791095 - antisense 0.0
+RN7SKP111 20 11799469 11799739 - sense 0.0
+RN7SKP111 20 11799469 11799739 - antisense 0.0
+RP5-1012F16.2 20 11819003 11819222 + sense 0.0
+RP5-1012F16.2 20 11819003 11819222 + antisense 0.0
+BTBD3 20 11871371 11907257 + sense 0.0
+BTBD3 20 11871371 11907257 + antisense 0.0
+RP4-742J24.2 20 11890052 11899325 - sense 0.0
+RP4-742J24.2 20 11890052 11899325 - antisense 0.0
+RP4-796I8.1 20 12224543 12224944 - sense 0.0
+RP4-796I8.1 20 12224543 12224944 - antisense 0.0
+RP11-102J14.1 20 12286261 12297133 - sense 0.0
+RP11-102J14.1 20 12286261 12297133 - antisense 0.0
+PA2G4P2 20 12360704 12361903 + sense 0.0
+PA2G4P2 20 12360704 12361903 + antisense 0.0
+RP5-1069C8.2 20 12845850 12933167 - sense 0.0
+RP5-1069C8.2 20 12845850 12933167 - antisense 0.0
+RP5-1069C8.3 20 12915525 12916431 - sense 0.0
+RP5-1069C8.3 20 12915525 12916431 - antisense 0.0
+RP11-157E14.1 20 12930986 12932275 + sense 0.0
+RP11-157E14.1 20 12930986 12932275 + antisense 0.0
+SPTLC3 20 12989627 13147411 + sense 0.0
+SPTLC3 20 12989627 13147411 + antisense 0.0
+RP4-718P11.1 20 13054315 13054960 - sense 0.0
+RP4-718P11.1 20 13054315 13054960 - antisense 0.0
+ISM1 20 13202418 13281298 + sense 0.0
+ISM1 20 13202418 13281298 + antisense 0.0
+ISM1-AS1 20 13218448 13220321 - sense 0.0
+ISM1-AS1 20 13218448 13220321 - antisense 0.0
+RP5-1077I2.3 20 13224711 13226016 - sense 0.0
+RP5-1077I2.3 20 13224711 13226016 - antisense 0.0
+TASP1 20 13246709 13619587 - sense 0.0
+TASP1 20 13246709 13619587 - antisense 0.0
+GAPDHP2 20 13373324 13374321 + sense 0.0
+GAPDHP2 20 13373324 13374321 + antisense 0.0
+ESF1 20 13694969 13765532 - sense 0.0
+ESF1 20 13694969 13765532 - antisense 0.0
+NDUFAF5 20 13765596 13799067 + sense 0.0
+NDUFAF5 20 13765596 13799067 + antisense 0.0
+SEL1L2 20 13829893 13977089 - sense 0.0
+SEL1L2 20 13829893 13977089 - antisense 0.0
+AL117333.1 20 13936410 13936503 - sense 0.0
+AL117333.1 20 13936410 13936503 - antisense 0.0
+RNU6-278P 20 13953962 13954070 - sense 0.0
+RNU6-278P 20 13953962 13954070 - antisense 0.0
+MACROD2 20 13976015 16033842 + sense 0.0
+MACROD2 20 13976015 16033842 + antisense 0.0
+RPS3P1 20 13984154 13984345 + sense 0.0
+RPS3P1 20 13984154 13984345 + antisense 0.0
+AIMP1P1 20 14108046 14108982 + sense 0.0
+AIMP1P1 20 14108046 14108982 + antisense 0.0
+RN7SL864P 20 14203687 14203976 + sense 0.0
+RN7SL864P 20 14203687 14203976 + antisense 0.0
+FLRT3 20 14303634 14318262 - sense 0.0
+FLRT3 20 14303634 14318262 - antisense 0.0
+RNU6-228P 20 14332966 14333071 + sense 0.0
+RNU6-228P 20 14332966 14333071 + antisense 0.0
+RNF11B 20 14527830 14528269 - sense 0.0
+RNF11B 20 14527830 14528269 - antisense 0.0
+MACROD2-IT1 20 14535030 14617170 + sense 0.0
+MACROD2-IT1 20 14535030 14617170 + antisense 0.0
+RPS10P2 20 14738209 14738702 + sense 0.0
+RPS10P2 20 14738209 14738702 + antisense 0.0
+MACROD2-AS1 20 14864899 14910161 - sense 0.0
+MACROD2-AS1 20 14864899 14910161 - antisense 0.0
+RP5-974N19.1 20 14914489 14916009 - sense 0.0
+RP5-974N19.1 20 14914489 14916009 - antisense 0.0
+RNU6-1159P 20 15002199 15002305 - sense 0.0
+RNU6-1159P 20 15002199 15002305 - antisense 0.0
+RNU6-115P 20 15003498 15003604 + sense 0.0
+RNU6-115P 20 15003498 15003604 + antisense 0.0
+RNA5SP475 20 15261410 15261519 - sense 0.0
+RNA5SP475 20 15261410 15261519 - antisense 0.0
+RP11-388K2.1 20 15532802 15533530 - sense 0.0
+RP11-388K2.1 20 15532802 15533530 - antisense 0.0
+AL121584.1 20 15539025 15539113 - sense 0.0
+AL121584.1 20 15539025 15539113 - antisense 0.0
+ENSAP1 20 15600139 15600464 - sense 0.0
+ENSAP1 20 15600139 15600464 - antisense 0.0
+PPIAP17 20 16204395 16205180 - sense 0.0
+PPIAP17 20 16204395 16205180 - antisense 0.0
+KIF16B 20 16252749 16554078 - sense 0.0
+KIF16B 20 16252749 16554078 - antisense 0.0
+AL118509.1 20 16390942 16391036 - sense 0.0
+AL118509.1 20 16390942 16391036 - antisense 0.0
+RPLP0P1 20 16566978 16567338 - sense 0.0
+RPLP0P1 20 16566978 16567338 - antisense 0.0
+Y_RNA 20 16651286 16651387 - sense 0.0
+Y_RNA 20 16651286 16651387 - antisense 0.0
+RPL7AL3 20 16664753 16665049 - sense 0.0
+RPL7AL3 20 16664753 16665049 - antisense 0.0
+RP4-705D16.3 20 16695489 16711593 - sense 0.0
+RP4-705D16.3 20 16695489 16711593 - antisense 0.0
+SNRPB2 20 16710606 16722421 + sense 0.0
+SNRPB2 20 16710606 16722421 + antisense 0.0
+OTOR 20 16729003 16750707 + sense 0.0
+OTOR 20 16729003 16750707 + antisense 0.0
+RP5-1195D24.1 20 16838607 16844793 - sense 0.0
+RP5-1195D24.1 20 16838607 16844793 - antisense 0.0
+U3 20 16963477 16963678 - sense 0.0
+U3 20 16963477 16963678 - antisense 0.0
+RNU6-27P 20 17168155 17168261 + sense 0.0
+RNU6-27P 20 17168155 17168261 + antisense 0.0
+RP1-298M8.1 20 17168779 17168989 + sense 0.0
+RP1-298M8.1 20 17168779 17168989 + antisense 0.0
+RNU1-131P 20 17189705 17189865 + sense 0.0
+RNU1-131P 20 17189705 17189865 + antisense 0.0
+PCSK2 20 17206752 17465223 + sense 0.0
+PCSK2 20 17206752 17465223 + antisense 0.0
+DYNLT3P1 20 17459730 17460076 - sense 0.0
+DYNLT3P1 20 17459730 17460076 - antisense 0.0
+BFSP1 20 17474550 17549865 - sense 0.0
+BFSP1 20 17474550 17549865 - antisense 0.0
+RPS27AP2 20 17497488 17497952 + sense 0.0
+RPS27AP2 20 17497488 17497952 + antisense 0.0
+DSTN 20 17550508 17590564 + sense 0.0
+DSTN 20 17550508 17590564 + antisense 0.0
+RN7SKP69 20 17556851 17557155 - sense 0.0
+RN7SKP69 20 17556851 17557155 - antisense 0.0
+RP11-462D18.2 20 17579900 17580452 - sense 0.0
+RP11-462D18.2 20 17579900 17580452 - antisense 0.0
+RRBP1 20 17594323 17662940 - sense 0.0
+RRBP1 20 17594323 17662940 - antisense 0.0
+BANF2 20 17674317 17716516 + sense 0.0
+BANF2 20 17674317 17716516 + antisense 0.0
+AL035045.1 20 17823227 17823372 + sense 0.0
+AL035045.1 20 17823227 17823372 + antisense 0.0
+RP5-905G11.3 20 17868007 17868804 - sense 0.0
+RP5-905G11.3 20 17868007 17868804 - antisense 0.0
+RNU6-192P 20 17884406 17884505 + sense 0.0
+RNU6-192P 20 17884406 17884505 + antisense 0.0
+SNX5 20 17922241 17949623 - sense 0.0
+SNX5 20 17922241 17949623 - antisense 0.0
+OVOL2 20 17937623 18039832 - sense 0.0
+OVOL2 20 17937623 18039832 - antisense 0.0
+SNORD17 20 17943353 17943589 - sense 0.0
+SNORD17 20 17943353 17943589 - antisense 0.0
+MGME1 20 17949556 17971765 + sense 0.0
+MGME1 20 17949556 17971765 + antisense 0.0
+PTMAP3 20 17992599 17992928 + sense 0.0
+PTMAP3 20 17992599 17992928 + antisense 0.0
+RP4-726N1.2 20 18040137 18051652 + sense 0.0
+RP4-726N1.2 20 18040137 18051652 + antisense 0.0
+RPL15P1 20 18070760 18071359 - sense 0.0
+RPL15P1 20 18070760 18071359 - antisense 0.0
+RNU7-137P 20 18076215 18076276 - sense 0.0
+RNU7-137P 20 18076215 18076276 - antisense 0.0
+Y_RNA 20 18094111 18094223 - sense 0.0
+Y_RNA 20 18094111 18094223 - antisense 0.0
+PET117 20 18118517 18123813 + sense 0.0
+PET117 20 18118517 18123813 + antisense 0.0
+CSRP2BP 20 18118762 18169031 + sense 0.0
+CSRP2BP 20 18118762 18169031 + antisense 0.0
+AL050321.1 20 18150549 18150633 - sense 0.0
+AL050321.1 20 18150549 18150633 - antisense 0.0
+RP4-717M23.2 20 18200757 18201156 + sense 0.0
+RP4-717M23.2 20 18200757 18201156 + antisense 0.0
+RN7SL14P 20 18239200 18239495 - sense 0.0
+RN7SL14P 20 18239200 18239495 - antisense 0.0
+RNU2-56P 20 18246334 18246523 - sense 0.0
+RNU2-56P 20 18246334 18246523 - antisense 0.0
+ZNF133 20 18269121 18297640 + sense 0.0
+ZNF133 20 18269121 18297640 + antisense 0.0
+RN7SKP74 20 18275787 18276095 - sense 0.0
+RN7SKP74 20 18275787 18276095 - antisense 0.0
+RP4-568F9.3 20 18294409 18295755 - sense 0.0
+RP4-568F9.3 20 18294409 18295755 - antisense 0.0
+RP4-568F9.6 20 18303196 18339944 - sense 0.0
+RP4-568F9.6 20 18303196 18339944 - antisense 0.0
+RNY4P11 20 18309650 18309746 + sense 0.0
+RNY4P11 20 18309650 18309746 + antisense 0.0
+LINC00851 20 18359693 18362128 + sense 0.0
+LINC00851 20 18359693 18362128 + antisense 0.0
+DZANK1 20 18364011 18447925 - sense 0.0
+DZANK1 20 18364011 18447925 - antisense 0.0
+GCNT1P1 20 18400804 18402098 - sense 0.0
+GCNT1P1 20 18400804 18402098 - antisense 0.0
+RNA5SP476 20 18414486 18414588 + sense 0.0
+RNA5SP476 20 18414486 18414588 + antisense 0.0
+POLR3F 20 18447771 18465287 + sense 0.0
+POLR3F 20 18447771 18465287 + antisense 0.0
+MIR3192 20 18451259 18451335 + sense 0.0
+MIR3192 20 18451259 18451335 + antisense 0.0
+RPL21P3 20 18465909 18466696 + sense 0.0
+RPL21P3 20 18465909 18466696 + antisense 0.0
+RBBP9 20 18467184 18477887 - sense 0.0
+RBBP9 20 18467184 18477887 - antisense 0.0
+RPS19P1 20 18485277 18485710 + sense 0.0
+RPS19P1 20 18485277 18485710 + antisense 0.0
+SEC23B 20 18488137 18542059 + sense 0.0
+SEC23B 20 18488137 18542059 + antisense 0.0
+AL121893.1 20 18526352 18526428 - sense 0.0
+AL121893.1 20 18526352 18526428 - antisense 0.0
+LINC00493 20 18548064 18550207 + sense 0.0
+LINC00493 20 18548064 18550207 + antisense 0.0
+DTD1 20 18568537 18744561 + sense 0.0
+DTD1 20 18568537 18744561 + antisense 0.0
+RN7SL638P 20 18572974 18573261 + sense 0.0
+RN7SL638P 20 18572974 18573261 + antisense 0.0
+RNU6ATAC34P 20 18591691 18591811 - sense 0.0
+RNU6ATAC34P 20 18591691 18591811 - antisense 0.0
+DUXAP7 20 18623426 18624278 - sense 0.0
+DUXAP7 20 18623426 18624278 - antisense 0.0
+RP11-379J5.5 20 18655039 18679353 - sense 0.0
+RP11-379J5.5 20 18655039 18679353 - antisense 0.0
+EEF1A1P34 20 18763068 18764334 - sense 0.0
+EEF1A1P34 20 18763068 18764334 - antisense 0.0
+LINC00652 20 18768295 18774979 - sense 0.0
+LINC00652 20 18768295 18774979 - antisense 0.0
+RP5-1068E13.7 20 18775173 18776711 + sense 0.0
+RP5-1068E13.7 20 18775173 18776711 + antisense 0.0
+C20orf78 20 18790372 18810797 - sense 0.0
+C20orf78 20 18790372 18810797 - antisense 0.0
+SCP2D1 20 18794370 18795033 + sense 0.0
+SCP2D1 20 18794370 18795033 + antisense 0.0
+AL136090.1 20 19106429 19106551 + sense 0.0
+AL136090.1 20 19106429 19106551 + antisense 0.0
+SLC24A3 20 19193290 19703581 + sense 0.0
+SLC24A3 20 19193290 19703581 + antisense 0.0
+RP11-97N19.2 20 19193496 19194121 - sense 0.0
+RP11-97N19.2 20 19193496 19194121 - antisense 0.0
+RP5-1027G4.3 20 19222946 19265240 - sense 0.0
+RP5-1027G4.3 20 19222946 19265240 - antisense 0.0
+AL049647.1 20 19321940 19322016 + sense 0.0
+AL049647.1 20 19321940 19322016 + antisense 0.0
+AL139429.1 20 19570741 19570831 - sense 0.0
+AL139429.1 20 19570741 19570831 - antisense 0.0
+RP4-718D20.3 20 19673853 19678220 - sense 0.0
+RP4-718D20.3 20 19673853 19678220 - antisense 0.0
+AL121761.1 20 19715460 19715553 - sense 0.0
+AL121761.1 20 19715460 19715553 - antisense 0.0
+AL121761.2 20 19738296 19738679 - sense 0.0
+AL121761.2 20 19738296 19738679 - antisense 0.0
+RP1-122P22.2 20 19738352 19790319 + sense 0.0
+RP1-122P22.2 20 19738352 19790319 + antisense 0.0
+RPL12L3 20 19804087 19804587 - sense 0.0
+RPL12L3 20 19804087 19804587 - antisense 0.0
+RIN2 20 19867165 19983101 + sense 0.0
+RIN2 20 19867165 19983101 + antisense 0.0
+NAA20 20 19997760 20014299 + sense 0.0
+NAA20 20 19997760 20014299 + antisense 0.0
+CRNKL1 20 20015012 20036690 - sense 0.0
+CRNKL1 20 20015012 20036690 - antisense 0.0
+C20orf26 20 20033158 20341346 + sense 0.0
+C20orf26 20 20033158 20341346 + antisense 0.0
+RP5-1002M8.4 20 20075045 20076328 - sense 0.0
+RP5-1002M8.4 20 20075045 20076328 - antisense 0.0
+RP5-1178H5.2 20 20194943 20195906 - sense 0.0
+RP5-1178H5.2 20 20194943 20195906 - antisense 0.0
+RPL17P1 20 20233947 20234482 - sense 0.0
+RPL17P1 20 20233947 20234482 - antisense 0.0
+RP5-1096J16.1 20 20239051 20248453 - sense 0.0
+RP5-1096J16.1 20 20239051 20248453 - antisense 0.0
+RN7SL690P 20 20297428 20297684 - sense 0.0
+RN7SL690P 20 20297428 20297684 - antisense 0.0
+INSM1 20 20348765 20351590 + sense 0.0
+INSM1 20 20348765 20351590 + antisense 0.0
+RALGAPA2 20 20370196 20693131 - sense 0.0
+RALGAPA2 20 20370196 20693131 - antisense 0.0
+EIF4E2P1 20 20640354 20640608 + sense 0.0
+EIF4E2P1 20 20640354 20640608 + antisense 0.0
+RP11-23O13.1 20 20701830 20702522 + sense 0.0
+RP11-23O13.1 20 20701830 20702522 + antisense 0.0
+RN7SL607P 20 20719078 20719374 - sense 0.0
+RN7SL607P 20 20719078 20719374 - antisense 0.0
+MRPS11P1 20 20834764 20835285 - sense 0.0
+MRPS11P1 20 20834764 20835285 - antisense 0.0
+RP5-1177M21.1 20 20951089 20953203 + sense 0.0
+RP5-1177M21.1 20 20951089 20953203 + antisense 0.0
+LINC00237 20 21068245 21086999 - sense 0.0
+LINC00237 20 21068245 21086999 - antisense 0.0
+RPL24P2 20 21095364 21095838 + sense 0.0
+RPL24P2 20 21095364 21095838 + antisense 0.0
+PLK1S1 20 21106624 21227260 + sense 0.0
+PLK1S1 20 21106624 21227260 + antisense 0.0
+RNA5SP477 20 21119597 21119715 - sense 0.0
+RNA5SP477 20 21119597 21119715 - antisense 0.0
+RP5-872K7.7 20 21129382 21143531 - sense 0.0
+RP5-872K7.7 20 21129382 21143531 - antisense 0.0
+RP4-777D9.2 20 21134664 21198927 - sense 0.0
+RP4-777D9.2 20 21134664 21198927 - antisense 0.0
+RPS15AP1 20 21146846 21147236 - sense 0.0
+RPS15AP1 20 21146846 21147236 - antisense 0.0
+ZNF877P 20 21246492 21247103 + sense 0.0
+ZNF877P 20 21246492 21247103 + antisense 0.0
+XRN2 20 21283942 21370463 + sense 0.0
+XRN2 20 21283942 21370463 + antisense 0.0
+NKX2-4 20 21376005 21378666 - sense 0.0
+NKX2-4 20 21376005 21378666 - antisense 0.0
+RP11-227D2.3 20 21378456 21381029 + sense 0.0
+RP11-227D2.3 20 21378456 21381029 + antisense 0.0
+RN7SKP140 20 21405396 21405679 - sense 0.0
+RN7SKP140 20 21405396 21405679 - antisense 0.0
+RP5-984P4.1 20 21468882 21469263 - sense 0.0
+RP5-984P4.1 20 21468882 21469263 - antisense 0.0
+GSTM3P1 20 21482033 21482606 + sense 0.0
+GSTM3P1 20 21482033 21482606 + antisense 0.0
+NKX2-2 20 21491648 21494664 - sense 0.0
+NKX2-2 20 21491648 21494664 - antisense 0.0
+NKX2-2-AS1 20 21492085 21492947 + sense 0.0
+NKX2-2-AS1 20 21492085 21492947 + antisense 0.0
+RP5-984P4.4 20 21510840 21511382 + sense 0.0
+RP5-984P4.4 20 21510840 21511382 + antisense 0.0
+PAX1 20 21686297 21696620 + sense 0.0
+PAX1 20 21686297 21696620 + antisense 0.0
+SLC25A6P1 20 21722941 21723715 - sense 0.0
+SLC25A6P1 20 21722941 21723715 - antisense 0.0
+RPL41P1 20 21735866 21736171 + sense 0.0
+RPL41P1 20 21735866 21736171 + antisense 0.0
+RP5-1185K9.1 20 21928285 21951421 + sense 0.0
+RP5-1185K9.1 20 21928285 21951421 + antisense 0.0
+RP11-125P18.1 20 22034831 22055238 + sense 0.0
+RP11-125P18.1 20 22034831 22055238 + antisense 0.0
+RP5-1097P24.1 20 22201192 22203921 + sense 0.0
+RP5-1097P24.1 20 22201192 22203921 + antisense 0.0
+RP5-828K20.1 20 22252690 22254092 - sense 0.0
+RP5-828K20.1 20 22252690 22254092 - antisense 0.0
+RP5-828K20.2 20 22260866 22263310 - sense 0.0
+RP5-828K20.2 20 22260866 22263310 - antisense 0.0
+RP5-1004I9.2 20 22324331 22324568 - sense 0.0
+RP5-1004I9.2 20 22324331 22324568 - antisense 0.0
+RP5-1004I9.1 20 22380989 22401281 - sense 0.0
+RP5-1004I9.1 20 22380989 22401281 - antisense 0.0
+LINC00261 20 22528309 22559280 - sense 0.0
+LINC00261 20 22528309 22559280 - antisense 0.0
+FOXA2 20 22561643 22566093 - sense 0.0
+FOXA2 20 22561643 22566093 - antisense 0.0
+RP4-788L20.3 20 22568160 22588155 - sense 0.0
+RP4-788L20.3 20 22568160 22588155 - antisense 0.0
+RP11-359G22.2 20 22656710 22665982 - sense 0.0
+RP11-359G22.2 20 22656710 22665982 - antisense 0.0
+KRT18P3 20 22713440 22714727 - sense 0.0
+KRT18P3 20 22713440 22714727 - antisense 0.0
+AL158175.1 20 22713848 22713939 - sense 0.0
+AL158175.1 20 22713848 22713939 - antisense 0.0
+CYB5P4 20 22866308 22866706 - sense 0.0
+CYB5P4 20 22866308 22866706 - antisense 0.0
+RP11-189G24.2 20 22941171 22946700 - sense 0.0
+RP11-189G24.2 20 22941171 22946700 - antisense 0.0
+RP4-753D10.5 20 22990846 23011422 - sense 0.0
+RP4-753D10.5 20 22990846 23011422 - antisense 0.0
+RP4-753D10.3 20 23012179 23019873 + sense 0.0
+RP4-753D10.3 20 23012179 23019873 + antisense 0.0
+SSTR4 20 23016057 23017314 + sense 0.0
+SSTR4 20 23016057 23017314 + antisense 0.0
+THBD 20 23026270 23030378 - sense 0.0
+THBD 20 23026270 23030378 - antisense 0.0
+CD93 20 23059986 23066977 - sense 0.0
+CD93 20 23059986 23066977 - antisense 0.0
+AL118508.1 20 23061083 23061278 - sense 0.0
+AL118508.1 20 23061083 23061278 - antisense 0.0
+LINC00656 20 23105705 23113258 - sense 0.0
+LINC00656 20 23105705 23113258 - antisense 0.0
+RNA5SP478 20 23141494 23141608 - sense 0.0
+RNA5SP478 20 23141494 23141608 - antisense 0.0
+RP4-737E23.2 20 23168765 23170944 + sense 0.0
+RP4-737E23.2 20 23168765 23170944 + antisense 0.0
+RP3-322G13.7 20 23327578 23332123 - sense 0.0
+RP3-322G13.7 20 23327578 23332123 - antisense 0.0
+AL096677.1 20 23330015 23334066 - sense 0.0
+AL096677.1 20 23330015 23334066 - antisense 0.0
+NXT1 20 23331373 23335414 + sense 0.0
+NXT1 20 23331373 23335414 + antisense 0.0
+RP3-322G13.5 20 23337231 23338753 - sense 0.0
+RP3-322G13.5 20 23337231 23338753 - antisense 0.0
+GZF1 20 23342787 23353700 + sense 0.0
+GZF1 20 23342787 23353700 + antisense 0.0
+NAPB 20 23355159 23402125 - sense 0.0
+NAPB 20 23355159 23402125 - antisense 0.0
+RNA5SP479 20 23361533 23361649 - sense 0.0
+RNA5SP479 20 23361533 23361649 - antisense 0.0
+CSTL1 20 23420322 23425567 + sense 0.0
+CSTL1 20 23420322 23425567 + antisense 0.0
+CST11 20 23431040 23433494 - sense 0.0
+CST11 20 23431040 23433494 - antisense 0.0
+Y_RNA 20 23438221 23438322 - sense 0.0
+Y_RNA 20 23438221 23438322 - antisense 0.0
+CST12P 20 23456337 23460435 + sense 0.0
+CST12P 20 23456337 23460435 + antisense 0.0
+CST8 20 23471738 23476655 + sense 0.0
+CST8 20 23471738 23476655 + antisense 0.0
+RP3-333B15.4 20 23497521 23498706 - sense 0.0
+RP3-333B15.4 20 23497521 23498706 - antisense 0.0
+CST13P 20 23499783 23522655 + sense 0.0
+CST13P 20 23499783 23522655 + antisense 0.0
+CST9LP1 20 23528401 23531289 - sense 0.0
+CST9LP1 20 23528401 23531289 - antisense 0.0
+CST9L 20 23545369 23549386 - sense 0.0
+CST9L 20 23545369 23549386 - antisense 0.0
+RP11-218C14.2 20 23564282 23567147 + sense 0.0
+RP11-218C14.2 20 23564282 23567147 + antisense 0.0
+CST9 20 23583047 23586513 - sense 0.0
+CST9 20 23583047 23586513 - antisense 0.0
+CST3 20 23608534 23619110 - sense 0.0
+CST3 20 23608534 23619110 - antisense 0.0
+RP11-218C14.8 20 23612463 23612953 - sense 0.0
+RP11-218C14.8 20 23612463 23612953 - antisense 0.0
+RP11-218C14.5 20 23635862 23637027 - sense 0.0
+RP11-218C14.5 20 23635862 23637027 - antisense 0.0
+CST4 20 23666277 23669677 - sense 0.0
+CST4 20 23666277 23669677 - antisense 0.0
+CST2P1 20 23691957 23692043 - sense 0.0
+CST2P1 20 23691957 23692043 - antisense 0.0
+CST1 20 23728190 23731905 - sense 0.0
+CST1 20 23728190 23731905 - antisense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + sense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + antisense 0.0
+CST2 20 23804406 23807368 - sense 0.0
+CST2 20 23804406 23807368 - antisense 0.0
+CST5 20 23856572 23860387 - sense 0.0
+CST5 20 23856572 23860387 - antisense 0.0
+CSTP1 20 23899408 23902806 - sense 0.0
+CSTP1 20 23899408 23902806 - antisense 0.0
+RP5-831C21.1 20 23961222 23961371 - sense 0.0
+RP5-831C21.1 20 23961222 23961371 - antisense 0.0
+GGTLC1 20 23965690 23969416 - sense 0.0
+GGTLC1 20 23965690 23969416 - antisense 0.0
+POM121L3P 20 23969929 23971091 + sense 0.0
+POM121L3P 20 23969929 23971091 + antisense 0.0
+RP5-1100I6.1 20 24123226 24125022 - sense 0.0
+RP5-1100I6.1 20 24123226 24125022 - antisense 0.0
+RP5-1100I6.2 20 24180403 24205224 + sense 0.0
+RP5-1100I6.2 20 24180403 24205224 + antisense 0.0
+RNU1-23P 20 24217891 24218034 + sense 0.0
+RNU1-23P 20 24217891 24218034 + antisense 0.0
+RP4-564O4.1 20 24278221 24298722 - sense 0.0
+RP4-564O4.1 20 24278221 24298722 - antisense 0.0
+GAPDHP53 20 24426027 24426950 + sense 0.0
+GAPDHP53 20 24426027 24426950 + antisense 0.0
+SYNDIG1 20 24449835 24647252 + sense 0.0
+SYNDIG1 20 24449835 24647252 + antisense 0.0
+RP11-526K17.2 20 24472108 24482981 - sense 0.0
+RP11-526K17.2 20 24472108 24482981 - antisense 0.0
+RP5-860P4.2 20 24660183 24661627 + sense 0.0
+RP5-860P4.2 20 24660183 24661627 + antisense 0.0
+CST7 20 24929866 24940564 + sense 0.0
+CST7 20 24929866 24940564 + antisense 0.0
+APMAP 20 24943561 24973615 - sense 0.0
+APMAP 20 24943561 24973615 - antisense 0.0
+RNU6-1257P 20 24954807 24954916 + sense 0.0
+RNU6-1257P 20 24954807 24954916 + antisense 0.0
+ACSS1 20 24986868 25039616 - sense 0.0
+ACSS1 20 24986868 25039616 - antisense 0.0
+VSX1 20 25051521 25062996 - sense 0.0
+VSX1 20 25051521 25062996 - antisense 0.0
+RP5-1025A1.2 20 25079741 25080564 + sense 0.0
+RP5-1025A1.2 20 25079741 25080564 + antisense 0.0
+RP4-738P15.1 20 25121425 25129894 - sense 0.0
+RP4-738P15.1 20 25121425 25129894 - antisense 0.0
+RP4-738P15.4 20 25141803 25142697 - sense 0.0
+RP4-738P15.4 20 25141803 25142697 - antisense 0.0
+ENTPD6 20 25176329 25207365 + sense 0.0
+ENTPD6 20 25176329 25207365 + antisense 0.0
+Y_RNA 20 25195334 25195434 + sense 0.0
+Y_RNA 20 25195334 25195434 + antisense 0.0
+AL035252.1 20 25207122 25207370 - sense 0.0
+AL035252.1 20 25207122 25207370 - antisense 0.0
+PYGB 20 25228705 25278650 + sense 0.0
+PYGB 20 25228705 25278650 + antisense 0.0
+ABHD12 20 25275379 25371619 - sense 0.0
+ABHD12 20 25275379 25371619 - antisense 0.0
+PPIAP2 20 25348911 25349402 - sense 0.0
+PPIAP2 20 25348911 25349402 - antisense 0.0
+GINS1 20 25388363 25433264 + sense 0.0
+GINS1 20 25388363 25433264 + antisense 0.0
+NINL 20 25433341 25566153 - sense 0.0
+NINL 20 25433341 25566153 - antisense 0.0
+RNU6ATAC17P 20 25591789 25591859 + sense 0.0
+RNU6ATAC17P 20 25591789 25591859 + antisense 0.0
+NANP 20 25593571 25604811 - sense 0.0
+NANP 20 25593571 25604811 - antisense 0.0
+ZNF337-AS1 20 25604681 25658710 + sense 0.0
+ZNF337-AS1 20 25604681 25658710 + antisense 0.0
+RN7SL594P 20 25635232 25635517 - sense 0.0
+RN7SL594P 20 25635232 25635517 - antisense 0.0
+MED28P7 20 25650493 25651022 - sense 0.0
+MED28P7 20 25650493 25651022 - antisense 0.0
+ZNF337 20 25654851 25677477 - sense 0.0
+ZNF337 20 25654851 25677477 - antisense 0.0
+VN1R108P 20 25714900 25715729 + sense 0.0
+VN1R108P 20 25714900 25715729 + antisense 0.0
+RP13-401N8.1 20 25731854 25733397 + sense 0.0
+RP13-401N8.1 20 25731854 25733397 + antisense 0.0
+FAM182B 20 25744102 25848861 - sense 0.0
+FAM182B 20 25744102 25848861 - antisense 0.0
+RP13-401N8.3 20 25816621 25817468 - sense 0.0
+RP13-401N8.3 20 25816621 25817468 - antisense 0.0
+CFTRP1 20 25900135 25900317 - sense 0.0
+CFTRP1 20 25900135 25900317 - antisense 0.0
+RP4-760C5.5 20 25936448 25949924 + sense 0.0
+RP4-760C5.5 20 25936448 25949924 + antisense 0.0
+RP4-760C5.3 20 25989427 25991167 - sense 0.0
+RP4-760C5.3 20 25989427 25991167 - antisense 0.0
+CTD-2514C3.1 20 25999468 26001320 + sense 0.0
+CTD-2514C3.1 20 25999468 26001320 + antisense 0.0
+FAM182A 20 26035291 26073683 + sense 0.0
+FAM182A 20 26035291 26073683 + antisense 0.0
+NCOR1P1 20 26084052 26094664 - sense 0.0
+NCOR1P1 20 26084052 26094664 - antisense 0.0
+RP13-329D4.3 20 26113523 26114834 - sense 0.0
+RP13-329D4.3 20 26113523 26114834 - antisense 0.0
+MIR663A 20 26167556 26232162 - sense 0.0
+MIR663A 20 26167556 26232162 - antisense 0.0
+RP3-410C9.2 20 26171625 26174582 + sense 0.0
+RP3-410C9.2 20 26171625 26174582 + antisense 0.0
+RP4-610C12.2 20 29449474 29449652 - sense 0.0
+RP4-610C12.2 20 29449474 29449652 - antisense 0.0
+RP4-610C12.4 20 29513582 29521213 - sense 0.0
+RP4-610C12.4 20 29513582 29521213 - antisense 0.0
+RP4-610C12.3 20 29521637 29522987 - sense 0.0
+RP4-610C12.3 20 29521637 29522987 - antisense 0.0
+Y_RNA 20 29543691 29543802 - sense 0.0
+Y_RNA 20 29543691 29543802 - antisense 0.0
+RP4-610C12.1 20 29558488 29596406 - sense 0.0
+RP4-610C12.1 20 29558488 29596406 - antisense 0.0
+FRG1B 20 29611857 29634010 + sense 0.0
+FRG1B 20 29611857 29634010 + antisense 0.0
+AL441988.1 20 29637162 29637300 + sense 0.0
+AL441988.1 20 29637162 29637300 + antisense 0.0
+MLLT10P1 20 29637799 29638060 - sense 0.0
+MLLT10P1 20 29637799 29638060 - antisense 0.0
+DEFB115 20 29845467 29847435 + sense 0.0
+DEFB115 20 29845467 29847435 + antisense 0.0
+DKKL1P1 20 29861973 29862670 + sense 0.0
+DKKL1P1 20 29861973 29862670 + antisense 0.0
+RP5-854E16.2 20 29873120 29874638 - sense 0.0
+RP5-854E16.2 20 29873120 29874638 - antisense 0.0
+DEFB116 20 29891015 29896388 - sense 0.0
+DEFB116 20 29891015 29896388 - antisense 0.0
+RPL31P3 20 29899106 29899765 - sense 0.0
+RPL31P3 20 29899106 29899765 - antisense 0.0
+HAUS6P2 20 29929174 29932274 - sense 0.0
+HAUS6P2 20 29929174 29932274 - antisense 0.0
+RNA5SP480 20 29944673 29944781 + sense 0.0
+RNA5SP480 20 29944673 29944781 + antisense 0.0
+DEFB117 20 29948578 29948733 + sense 0.0
+DEFB117 20 29948578 29948733 + antisense 0.0
+DEFB118 20 29956421 29961726 + sense 0.0
+DEFB118 20 29956421 29961726 + antisense 0.0
+SNORA40 20 29964122 29964249 + sense 0.0
+SNORA40 20 29964122 29964249 + antisense 0.0
+DEFB119 20 29964967 29978406 - sense 0.0
+DEFB119 20 29964967 29978406 - antisense 0.0
+DEFB121 20 29992648 30000641 - sense 0.0
+DEFB121 20 29992648 30000641 - antisense 0.0
+DEFB122 20 30009239 30016983 - sense 0.0
+DEFB122 20 30009239 30016983 - antisense 0.0
+DEFB123 20 30028322 30038060 + sense 0.0
+DEFB123 20 30028322 30038060 + antisense 0.0
+DEFB124 20 30053309 30064560 - sense 0.0
+DEFB124 20 30053309 30064560 - antisense 0.0
+REM1 20 30063096 30072708 + sense 0.0
+REM1 20 30063096 30072708 + antisense 0.0
+LINC00028 20 30073581 30075377 + sense 0.0
+LINC00028 20 30073581 30075377 + antisense 0.0
+HM13 20 30102231 30157370 + sense 0.0
+HM13 20 30102231 30157370 + antisense 0.0
+RP3-324O17.4 20 30135307 30135852 + sense 0.0
+RP3-324O17.4 20 30135307 30135852 + antisense 0.0
+HM13-IT1 20 30150969 30151879 + sense 0.0
+HM13-IT1 20 30150969 30151879 + antisense 0.0
+HM13-AS1 20 30155510 30161066 - sense 0.0
+HM13-AS1 20 30155510 30161066 - antisense 0.0
+RNU6-384P 20 30168892 30168995 + sense 0.0
+RNU6-384P 20 30168892 30168995 + antisense 0.0
+ID1 20 30193086 30194318 + sense 0.0
+ID1 20 30193086 30194318 + antisense 0.0
+MIR3193 20 30194989 30195043 + sense 0.0
+MIR3193 20 30194989 30195043 + antisense 0.0
+COX4I2 20 30225691 30232809 + sense 0.0
+COX4I2 20 30225691 30232809 + antisense 0.0
+BCL2L1 20 30252255 30311792 - sense 0.0
+BCL2L1 20 30252255 30311792 - antisense 0.0
+RP11-243J16.7 20 30274019 30304628 + sense 0.0
+RP11-243J16.7 20 30274019 30304628 + antisense 0.0
+AL160175.1 20 30309001 30309134 + sense 0.0
+AL160175.1 20 30309001 30309134 + antisense 0.0
+TPX2 20 30327074 30389608 + sense 0.0
+TPX2 20 30327074 30389608 + antisense 0.0
+RP11-243J16.8 20 30396306 30396552 - sense 0.0
+RP11-243J16.8 20 30396306 30396552 - antisense 0.0
+MYLK2 20 30407111 30422492 + sense 0.0
+MYLK2 20 30407111 30422492 + antisense 0.0
+FOXS1 20 30432103 30433420 - sense 0.0
+FOXS1 20 30432103 30433420 - antisense 0.0
+DUSP15 20 30435440 30458550 - sense 0.0
+DUSP15 20 30435440 30458550 - antisense 0.0
+TTLL9 20 30458505 30532764 + sense 0.0
+TTLL9 20 30458505 30532764 + antisense 0.0
+RNU1-94P 20 30489057 30489229 + sense 0.0
+RNU1-94P 20 30489057 30489229 + antisense 0.0
+PDRG1 20 30532758 30539895 - sense 0.0
+PDRG1 20 30532758 30539895 - antisense 0.0
+XKR7 20 30555805 30591190 + sense 0.0
+XKR7 20 30555805 30591190 + antisense 0.0
+RNA5SP481 20 30596154 30596275 + sense 0.0
+RNA5SP481 20 30596154 30596275 + antisense 0.0
+CCM2L 20 30598245 30619984 + sense 0.0
+CCM2L 20 30598245 30619984 + antisense 0.0
+RP1-310O13.7 20 30615556 30619378 - sense 0.0
+RP1-310O13.7 20 30615556 30619378 - antisense 0.0
+RNA5SP482 20 30638391 30638508 + sense 0.0
+RNA5SP482 20 30638391 30638508 + antisense 0.0
+HCK 20 30639991 30689659 + sense 0.0
+HCK 20 30639991 30689659 + antisense 0.0
+TM9SF4 20 30697309 30755061 + sense 0.0
+TM9SF4 20 30697309 30755061 + antisense 0.0
+AL049539.1 20 30706457 30706554 - sense 0.0
+AL049539.1 20 30706457 30706554 - antisense 0.0
+RSL24D1P6 20 30758193 30758593 - sense 0.0
+RSL24D1P6 20 30758193 30758593 - antisense 0.0
+TSPY26P 20 30774280 30778330 - sense 0.0
+TSPY26P 20 30774280 30778330 - antisense 0.0
+PLAGL2 20 30780306 30795594 - sense 0.0
+PLAGL2 20 30780306 30795594 - antisense 0.0
+POFUT1 20 30795683 30826470 + sense 0.0
+POFUT1 20 30795683 30826470 + antisense 0.0
+MIR1825 20 30825598 30825650 + sense 0.0
+MIR1825 20 30825598 30825650 + antisense 0.0
+KIF3B 20 30865467 30922814 + sense 0.0
+KIF3B 20 30865467 30922814 + antisense 0.0
+AL121897.1 20 30865503 30865591 - sense 0.0
+AL121897.1 20 30865503 30865591 - antisense 0.0
+ASXL1 20 30946155 31027122 + sense 0.0
+ASXL1 20 30946155 31027122 + antisense 0.0
+C20orf112 20 31030862 31172876 - sense 0.0
+C20orf112 20 31030862 31172876 - antisense 0.0
+RP5-1184F4.5 20 31037558 31041410 + sense 0.0
+RP5-1184F4.5 20 31037558 31041410 + antisense 0.0
+RP11-410N8.3 20 31148895 31161690 + sense 0.0
+RP11-410N8.3 20 31148895 31161690 + antisense 0.0
+RP11-410N8.1 20 31169765 31181702 + sense 0.0
+RP11-410N8.1 20 31169765 31181702 + antisense 0.0
+RP11-410N8.4 20 31175281 31196695 + sense 0.0
+RP11-410N8.4 20 31175281 31196695 + antisense 0.0
+C20orf203 20 31219428 31261743 - sense 0.0
+C20orf203 20 31219428 31261743 - antisense 0.0
+BAK1P1 20 31276723 31278816 - sense 0.0
+BAK1P1 20 31276723 31278816 - antisense 0.0
+COMMD7 20 31290493 31331803 - sense 0.0
+COMMD7 20 31290493 31331803 - antisense 0.0
+DNMT3B 20 31350191 31397162 + sense 0.0
+DNMT3B 20 31350191 31397162 + antisense 0.0
+MAPRE1 20 31407699 31438211 + sense 0.0
+MAPRE1 20 31407699 31438211 + antisense 0.0
+RP5-1085F17.4 20 31430934 31442063 - sense 0.0
+RP5-1085F17.4 20 31430934 31442063 - antisense 0.0
+RP5-1085F17.3 20 31444848 31446557 + sense 0.0
+RP5-1085F17.3 20 31444848 31446557 + antisense 0.0
+EFCAB8 20 31446729 31549006 + sense 0.0
+EFCAB8 20 31446729 31549006 + antisense 0.0
+SUN5 20 31571579 31592239 - sense 0.0
+SUN5 20 31571579 31592239 - antisense 0.0
+BPIFB2 20 31595406 31611515 + sense 0.0
+BPIFB2 20 31595406 31611515 + antisense 0.0
+BPIFB6 20 31619454 31631853 + sense 0.0
+BPIFB6 20 31619454 31631853 + antisense 0.0
+HDHD1P3 20 31635323 31635958 - sense 0.0
+HDHD1P3 20 31635323 31635958 - antisense 0.0
+BPIFB3 20 31643230 31661434 + sense 0.0
+BPIFB3 20 31643230 31661434 + antisense 0.0
+AL121756.1 20 31645394 31645476 - sense 0.0
+AL121756.1 20 31645394 31645476 - antisense 0.0
+BPIFB4 20 31667450 31699557 + sense 0.0
+BPIFB4 20 31667450 31699557 + antisense 0.0
+BPIFA2 20 31749574 31769218 + sense 0.0
+BPIFA2 20 31749574 31769218 + antisense 0.0
+SOCS2P1 20 31775197 31776098 + sense 0.0
+SOCS2P1 20 31775197 31776098 + antisense 0.0
+BPIFA4P 20 31781391 31798268 + sense 0.0
+BPIFA4P 20 31781391 31798268 + antisense 0.0
+RP11-49G10.3 20 31802726 31804873 - sense 0.0
+RP11-49G10.3 20 31802726 31804873 - antisense 0.0
+BPIFA3 20 31805116 31815564 + sense 0.0
+BPIFA3 20 31805116 31815564 + antisense 0.0
+AL121901.1 20 31823091 31823387 + sense 0.0
+AL121901.1 20 31823091 31823387 + antisense 0.0
+BPIFA1 20 31823801 31831115 + sense 0.0
+BPIFA1 20 31823801 31831115 + antisense 0.0
+RPL12P3 20 31860068 31860463 - sense 0.0
+RPL12P3 20 31860068 31860463 - antisense 0.0
+BPIFB1 20 31861286 31897684 + sense 0.0
+BPIFB1 20 31861286 31897684 + antisense 0.0
+BPIFB5P 20 31904675 31917775 + sense 0.0
+BPIFB5P 20 31904675 31917775 + antisense 0.0
+BPIFB9P 20 31935526 31942250 + sense 0.0
+BPIFB9P 20 31935526 31942250 + antisense 0.0
+CDK5RAP1 20 31946645 31989367 - sense 0.0
+CDK5RAP1 20 31946645 31989367 - antisense 0.0
+SNTA1 20 31995761 32031698 - sense 0.0
+SNTA1 20 31995761 32031698 - antisense 0.0
+RN7SL511P 20 32046605 32046854 - sense 0.0
+RN7SL511P 20 32046605 32046854 - antisense 0.0
+CBFA2T2 20 32077881 32237842 + sense 0.0
+CBFA2T2 20 32077881 32237842 + antisense 0.0
+RP1-63M2.6 20 32244893 32245415 + sense 0.0
+RP1-63M2.6 20 32244893 32245415 + antisense 0.0
+NECAB3 20 32244893 32262269 - sense 0.0
+NECAB3 20 32244893 32262269 - antisense 0.0
+C20orf144 20 32250090 32253425 + sense 0.0
+C20orf144 20 32250090 32253425 + antisense 0.0
+ACTL10 20 32254304 32256331 + sense 0.0
+ACTL10 20 32254304 32256331 + antisense 0.0
+RP1-63M2.5 20 32262323 32263186 + sense 0.0
+RP1-63M2.5 20 32262323 32263186 + antisense 0.0
+E2F1 20 32263489 32274210 - sense 0.0
+E2F1 20 32263489 32274210 - antisense 0.0
+PXMP4 20 32294512 32308125 - sense 0.0
+PXMP4 20 32294512 32308125 - antisense 0.0
+RP4-553F4.2 20 32316737 32319634 - sense 0.0
+RP4-553F4.2 20 32316737 32319634 - antisense 0.0
+ZNF341 20 32319463 32380075 + sense 0.0
+ZNF341 20 32319463 32380075 + antisense 0.0
+RPL31P2 20 32339973 32340349 - sense 0.0
+RPL31P2 20 32339973 32340349 - antisense 0.0
+RP4-553F4.6 20 32375179 32398903 - sense 0.0
+RP4-553F4.6 20 32375179 32398903 - antisense 0.0
+CHMP4B 20 32399110 32442172 + sense 0.0
+CHMP4B 20 32399110 32442172 + antisense 0.0
+TPM3P2 20 32500129 32501142 - sense 0.0
+TPM3P2 20 32500129 32501142 - antisense 0.0
+PIGPP3 20 32552968 32553382 + sense 0.0
+PIGPP3 20 32552968 32553382 + antisense 0.0
+RP5-1125A11.1 20 32570858 32582163 - sense 0.0
+RP5-1125A11.1 20 32570858 32582163 - antisense 0.0
+RALY 20 32581452 32696114 + sense 0.0
+RALY 20 32581452 32696114 + antisense 0.0
+RP5-1125A11.4 20 32602775 32605555 - sense 0.0
+RP5-1125A11.4 20 32602775 32605555 - antisense 0.0
+MIR4755 20 32636925 32636996 + sense 0.0
+MIR4755 20 32636925 32636996 + antisense 0.0
+RP1-64K7.4 20 32668955 32669754 + sense 0.0
+RP1-64K7.4 20 32668955 32669754 + antisense 0.0
+EIF2S2 20 32676104 32700138 - sense 0.0
+EIF2S2 20 32676104 32700138 - antisense 0.0
+RPS2P1 20 32710276 32711096 + sense 0.0
+RPS2P1 20 32710276 32711096 + antisense 0.0
+ASIP 20 32782375 32857150 + sense 0.0
+ASIP 20 32782375 32857150 + antisense 0.0
+XPOTP1 20 32801301 32803698 - sense 0.0
+XPOTP1 20 32801301 32803698 - antisense 0.0
+RP4-785G19.5 20 32822646 32868979 - sense 0.0
+RP4-785G19.5 20 32822646 32868979 - antisense 0.0
+RP4-785G19.2 20 32833759 32834343 - sense 0.0
+RP4-785G19.2 20 32833759 32834343 - antisense 0.0
+AHCY 20 32868074 32899608 - sense 0.0
+AHCY 20 32868074 32899608 - antisense 0.0
+CTD-3216D2.5 20 32869438 32874272 - sense 0.0
+CTD-3216D2.5 20 32869438 32874272 - antisense 0.0
+CTD-3216D2.4 20 32935477 32935591 - sense 0.0
+CTD-3216D2.4 20 32935477 32935591 - antisense 0.0
+ITCH 20 32951041 33099198 + sense 0.0
+ITCH 20 32951041 33099198 + antisense 0.0
+Y_RNA 20 32971971 32972071 - sense 0.0
+Y_RNA 20 32971971 32972071 - antisense 0.0
+CDC42P1 20 32989955 32990502 - sense 0.0
+CDC42P1 20 32989955 32990502 - antisense 0.0
+ITCH-AS1 20 33029397 33029830 - sense 0.0
+ITCH-AS1 20 33029397 33029830 - antisense 0.0
+ITCH-IT1 20 33038735 33042357 + sense 0.0
+ITCH-IT1 20 33038735 33042357 + antisense 0.0
+MIR644A 20 33054130 33054223 + sense 0.0
+MIR644A 20 33054130 33054223 + antisense 0.0
+FDX1P1 20 33063729 33064279 - sense 0.0
+FDX1P1 20 33063729 33064279 - antisense 0.0
+DYNLRB1 20 33104214 33128762 + sense 0.0
+DYNLRB1 20 33104214 33128762 + antisense 0.0
+Y_RNA 20 33114315 33114411 - sense 0.0
+Y_RNA 20 33114315 33114411 - antisense 0.0
+MAP1LC3A 20 33134658 33148149 + sense 0.0
+MAP1LC3A 20 33134658 33148149 + antisense 0.0
+PIGU 20 33148346 33264910 - sense 0.0
+PIGU 20 33148346 33264910 - antisense 0.0
+RP11-346K17.3 20 33276492 33276782 + sense 0.0
+RP11-346K17.3 20 33276492 33276782 + antisense 0.0
+NCOA6 20 33284722 33413452 - sense 0.0
+NCOA6 20 33284722 33413452 - antisense 0.0
+TP53INP2 20 33292094 33301243 + sense 0.0
+TP53INP2 20 33292094 33301243 + antisense 0.0
+HMGB3P1 20 33421378 33422265 - sense 0.0
+HMGB3P1 20 33421378 33422265 - antisense 0.0
+GGT7 20 33432523 33460663 - sense 0.0
+GGT7 20 33432523 33460663 - antisense 0.0
+ACSS2 20 33459949 33515769 + sense 0.0
+ACSS2 20 33459949 33515769 + antisense 0.0
+GSS 20 33516236 33543620 - sense 0.0
+GSS 20 33516236 33543620 - antisense 0.0
+MYH7B 20 33563206 33590240 + sense 0.0
+MYH7B 20 33563206 33590240 + antisense 0.0
+MIR499A 20 33578179 33578300 + sense 0.0
+MIR499A 20 33578179 33578300 + antisense 0.0
+TRPC4AP 20 33590207 33680674 - sense 0.0
+TRPC4AP 20 33590207 33680674 - antisense 0.0
+RNU6-407P 20 33618120 33618223 - sense 0.0
+RNU6-407P 20 33618120 33618223 - antisense 0.0
+EDEM2 20 33703167 33865928 - sense 0.0
+EDEM2 20 33703167 33865928 - antisense 0.0
+SNORD56 20 33704939 33705010 - sense 0.0
+SNORD56 20 33704939 33705010 - antisense 0.0
+PROCR 20 33759876 33765165 + sense 0.0
+PROCR 20 33759876 33765165 + antisense 0.0
+RNA5SP483 20 33783109 33783226 + sense 0.0
+RNA5SP483 20 33783109 33783226 + antisense 0.0
+RP4-614O4.12 20 33789550 33791091 - sense 0.0
+RP4-614O4.12 20 33789550 33791091 - antisense 0.0
+AL121753.1 20 33802392 33802492 + sense 0.0
+AL121753.1 20 33802392 33802492 + antisense 0.0
+MMP24-AS1 20 33804265 33865934 - sense 0.0
+MMP24-AS1 20 33804265 33865934 - antisense 0.0
+MT1P3 20 33805812 33805988 + sense 0.0
+MT1P3 20 33805812 33805988 + antisense 0.0
+MMP24 20 33814457 33864801 + sense 0.0
+MMP24 20 33814457 33864801 + antisense 0.0
+RP4-614O4.11 20 33855688 33867846 - sense 0.0
+RP4-614O4.11 20 33855688 33867846 - antisense 0.0
+EIF6 20 33866714 33872788 - sense 0.0
+EIF6 20 33866714 33872788 - antisense 0.0
+FAM83C-AS1 20 33873054 33873559 + sense 0.0
+FAM83C-AS1 20 33873054 33873559 + antisense 0.0
+FAM83C 20 33873534 33880204 - sense 0.0
+FAM83C 20 33873534 33880204 - antisense 0.0
+UQCC1 20 33890369 33999944 - sense 0.0
+UQCC1 20 33890369 33999944 - antisense 0.0
+GDF5OS 20 34020827 34023248 + sense 0.0
+GDF5OS 20 34020827 34023248 + antisense 0.0
+GDF5 20 34021145 34042568 - sense 0.0
+GDF5 20 34021145 34042568 - antisense 0.0
+MIR1289-1 20 34041776 34041919 - sense 0.0
+MIR1289-1 20 34041776 34041919 - antisense 0.0
+CEP250 20 34042985 34099804 + sense 0.0
+CEP250 20 34042985 34099804 + antisense 0.0
+RP3-477O4.14 20 34064028 34078808 - sense 0.0
+RP3-477O4.14 20 34064028 34078808 - antisense 0.0
+RP3-477O4.16 20 34106682 34107108 + sense 0.0
+RP3-477O4.16 20 34106682 34107108 + antisense 0.0
+RP3-477O4.5 20 34108569 34117481 - sense 0.0
+RP3-477O4.5 20 34108569 34117481 - antisense 0.0
+C20orf173 20 34111014 34117481 - sense 0.0
+C20orf173 20 34111014 34117481 - antisense 0.0
+ERGIC3 20 34129770 34145405 + sense 0.0
+ERGIC3 20 34129770 34145405 + antisense 0.0
+RPL36P4 20 34132175 34132492 - sense 0.0
+RPL36P4 20 34132175 34132492 - antisense 0.0
+FER1L4 20 34146507 34195484 - sense 0.0
+FER1L4 20 34146507 34195484 - antisense 0.0
+RPL37P1 20 34176246 34176529 + sense 0.0
+RPL37P1 20 34176246 34176529 + antisense 0.0
+SPAG4 20 34203814 34208971 + sense 0.0
+SPAG4 20 34203814 34208971 + antisense 0.0
+CPNE1 20 34213953 34252878 - sense 0.0
+CPNE1 20 34213953 34252878 - antisense 0.0
+RP1-309K20.6 20 34220262 34262466 - sense 0.0
+RP1-309K20.6 20 34220262 34262466 - antisense 0.0
+RN7SKP271 20 34231065 34231384 + sense 0.0
+RN7SKP271 20 34231065 34231384 + antisense 0.0
+RNU6-759P 20 34235250 34235352 - sense 0.0
+RNU6-759P 20 34235250 34235352 - antisense 0.0
+RBM12 20 34236847 34252878 - sense 0.0
+RBM12 20 34236847 34252878 - antisense 0.0
+NFS1 20 34255977 34287281 - sense 0.0
+NFS1 20 34255977 34287281 - antisense 0.0
+ROMO1 20 34287194 34288906 + sense 0.0
+ROMO1 20 34287194 34288906 + antisense 0.0
+RBM39 20 34291531 34330234 - sense 0.0
+RBM39 20 34291531 34330234 - antisense 0.0
+snoU13 20 34304393 34304492 + sense 0.0
+snoU13 20 34304393 34304492 + antisense 0.0
+RPF2P1 20 34340736 34341641 + sense 0.0
+RPF2P1 20 34340736 34341641 + antisense 0.0
+RNU6-1166P 20 34357707 34357789 - sense 0.0
+RNU6-1166P 20 34357707 34357789 - antisense 0.0
+PHF20 20 34359896 34538303 + sense 0.0
+PHF20 20 34359896 34538303 + antisense 0.0
+COX7BP2 20 34438596 34438837 - sense 0.0
+COX7BP2 20 34438596 34438837 - antisense 0.0
+Y_RNA 20 34441174 34441286 - sense 0.0
+Y_RNA 20 34441174 34441286 - antisense 0.0
+HIGD1AP16 20 34466398 34466655 + sense 0.0
+HIGD1AP16 20 34466398 34466655 + antisense 0.0
+RNU4-40P 20 34475581 34475723 + sense 0.0
+RNU4-40P 20 34475581 34475723 + antisense 0.0
+RNU6-937P 20 34516492 34516597 - sense 0.0
+RNU6-937P 20 34516492 34516597 - antisense 0.0
+SCAND1 20 34541539 34547394 - sense 0.0
+SCAND1 20 34541539 34547394 - antisense 0.0
+CNBD2 20 34556512 34618622 + sense 0.0
+CNBD2 20 34556512 34618622 + antisense 0.0
+LINC00657 20 34633544 34638882 - sense 0.0
+LINC00657 20 34633544 34638882 - antisense 0.0
+RP4-550H1.4 20 34660363 34673182 + sense 0.0
+RP4-550H1.4 20 34660363 34673182 + antisense 0.0
+HMGB3P2 20 34663940 34664523 - sense 0.0
+HMGB3P2 20 34663940 34664523 - antisense 0.0
+RP4-550H1.5 20 34674174 34676114 - sense 0.0
+RP4-550H1.5 20 34674174 34676114 - antisense 0.0
+EPB41L1 20 34679426 34820721 + sense 0.0
+EPB41L1 20 34679426 34820721 + antisense 0.0
+snoU13 20 34708884 34708994 + sense 0.0
+snoU13 20 34708884 34708994 + antisense 0.0
+RP11-234K24.3 20 34736648 34743682 - sense 0.0
+RP11-234K24.3 20 34736648 34743682 - antisense 0.0
+AL121895.1 20 34756461 34758180 - sense 0.0
+AL121895.1 20 34756461 34758180 - antisense 0.0
+AAR2 20 34824381 34858840 + sense 0.0
+AAR2 20 34824381 34858840 + antisense 0.0
+DLGAP4 20 34894258 35157040 + sense 0.0
+DLGAP4 20 34894258 35157040 + antisense 0.0
+RP5-977B1.7 20 35136563 35201794 - sense 0.0
+RP5-977B1.7 20 35136563 35201794 - antisense 0.0
+MYL9 20 35169887 35178228 + sense 0.0
+MYL9 20 35169887 35178228 + antisense 0.0
+RP5-977B1.11 20 35177530 35232932 - sense 0.0
+RP5-977B1.11 20 35177530 35232932 - antisense 0.0
+TGIF2 20 35201891 35222353 + sense 0.0
+TGIF2 20 35201891 35222353 + antisense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + sense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + antisense 0.0
+C20orf24 20 35234137 35240960 + sense 0.0
+C20orf24 20 35234137 35240960 + antisense 0.0
+SLA2 20 35240721 35274619 - sense 0.0
+SLA2 20 35240721 35274619 - antisense 0.0
+HNRNPA3P2 20 35248806 35249826 + sense 0.0
+HNRNPA3P2 20 35248806 35249826 + antisense 0.0
+NDRG3 20 35280169 35374481 - sense 0.0
+NDRG3 20 35280169 35374481 - antisense 0.0
+Y_RNA 20 35296962 35297073 - sense 0.0
+Y_RNA 20 35296962 35297073 - antisense 0.0
+AL132768.1 20 35374459 35374533 + sense 0.0
+AL132768.1 20 35374459 35374533 + antisense 0.0
+DSN1 20 35380194 35402221 - sense 0.0
+DSN1 20 35380194 35402221 - antisense 0.0
+SOGA1 20 35405845 35492089 - sense 0.0
+SOGA1 20 35405845 35492089 - antisense 0.0
+RN7SL156P 20 35498502 35498793 + sense 0.0
+RN7SL156P 20 35498502 35498793 + antisense 0.0
+TLDC2 20 35504524 35522638 + sense 0.0
+TLDC2 20 35504524 35522638 + antisense 0.0
+SAMHD1 20 35518632 35580246 - sense 0.0
+SAMHD1 20 35518632 35580246 - antisense 0.0
+RBL1 20 35624752 35724398 - sense 0.0
+RBL1 20 35624752 35724398 - antisense 0.0
+RPS3AP3 20 35650146 35650387 - sense 0.0
+RPS3AP3 20 35650146 35650387 - antisense 0.0
+RPS27AP3 20 35677657 35678110 + sense 0.0
+RPS27AP3 20 35677657 35678110 + antisense 0.0
+RBL1 20 35724188 35725581 + sense 0.0
+RBL1 20 35724188 35725581 + antisense 0.0
+MROH8 20 35729629 35807991 - sense 0.0
+MROH8 20 35729629 35807991 - antisense 0.0
+RP3-343K2.4 20 35794177 35794715 - sense 0.0
+RP3-343K2.4 20 35794177 35794715 - antisense 0.0
+RPN2 20 35806813 35870022 + sense 0.0
+RPN2 20 35806813 35870022 + antisense 0.0
+GHRH 20 35879489 35890238 - sense 0.0
+GHRH 20 35879489 35890238 - antisense 0.0
+MANBAL 20 35918041 35945663 + sense 0.0
+MANBAL 20 35918041 35945663 + antisense 0.0
+SRC 20 35973088 36034453 + sense 0.0
+SRC 20 35973088 36034453 + antisense 0.0
+RPL7AP14 20 36073135 36073936 - sense 0.0
+RPL7AP14 20 36073135 36073936 - antisense 0.0
+BLCAP 20 36120874 36156333 - sense 0.0
+BLCAP 20 36120874 36156333 - antisense 0.0
+NNAT 20 36149617 36152092 + sense 0.0
+NNAT 20 36149617 36152092 + antisense 0.0
+PPIAP3 20 36158441 36158945 + sense 0.0
+PPIAP3 20 36158441 36158945 + antisense 0.0
+GLRXP 20 36231254 36231587 - sense 0.0
+GLRXP 20 36231254 36231587 - antisense 0.0
+LINC00489 20 36247700 36251521 - sense 0.0
+LINC00489 20 36247700 36251521 - antisense 0.0
+RP4-640H8.2 20 36305312 36311636 + sense 0.0
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+CTNNBL1 20 36322408 36500531 + sense 0.0
+CTNNBL1 20 36322408 36500531 + antisense 0.0
+VSTM2L 20 36531499 36573752 + sense 0.0
+VSTM2L 20 36531499 36573752 + antisense 0.0
+RN7SKP185 20 36603558 36603883 - sense 0.0
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+TTI1 20 36611409 36661870 - sense 0.0
+TTI1 20 36611409 36661870 - antisense 0.0
+RPRD1B 20 36661948 36720768 + sense 0.0
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+Y_RNA 20 36681049 36681148 - sense 0.0
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+RN7SL237P 20 36726798 36727102 - sense 0.0
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+TGM2 20 36756863 36794980 - sense 0.0
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+KIAA1755 20 36838890 36889174 - sense 0.0
+KIAA1755 20 36838890 36889174 - antisense 0.0
+BPI 20 36888551 36965907 + sense 0.0
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+CTD-2308N23.2 20 36916733 36954938 - sense 0.0
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+LBP 20 36974759 37005665 + sense 0.0
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+RP4-564F22.5 20 37034658 37045444 - sense 0.0
+RP4-564F22.5 20 37034658 37045444 - antisense 0.0
+SNHG17 20 37049235 37063996 - sense 0.0
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+SNORA71B 20 37053843 37053979 - sense 0.0
+SNORA71B 20 37053843 37053979 - antisense 0.0
+SNORA71A 20 37055952 37056085 - sense 0.0
+SNORA71A 20 37055952 37056085 - antisense 0.0
+SNORA71C 20 37058313 37058446 - sense 0.0
+SNORA71C 20 37058313 37058446 - antisense 0.0
+SNORA71D 20 37062508 37062641 - sense 0.0
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+SNORA71 20 37070679 37070812 + sense 0.0
+SNORA71 20 37070679 37070812 + antisense 0.0
+SNHG11 20 37075221 37079564 + sense 0.0
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+SNORA60 20 37078013 37078146 + sense 0.0
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+RALGAPB 20 37101459 37207504 + sense 0.0
+RALGAPB 20 37101459 37207504 + antisense 0.0
+MIR548O2 20 37145206 37145275 + sense 0.0
+MIR548O2 20 37145206 37145275 + antisense 0.0
+RPS3P2 20 37166401 37167101 + sense 0.0
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+ADIG 20 37209838 37217106 + sense 0.0
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+ARHGAP40 20 37230577 37279678 + sense 0.0
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+RP5-1100H13.3 20 37243556 37244119 - sense 0.0
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+SLC32A1 20 37353105 37358015 + sense 0.0
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+ACTR5 20 37377085 37400834 + sense 0.0
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+RN7SKP173 20 37390171 37390485 + sense 0.0
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+PPP1R16B 20 37434348 37551667 + sense 0.0
+PPP1R16B 20 37434348 37551667 + antisense 0.0
+RN7SL116P 20 37501413 37501720 + sense 0.0
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+FAM83D 20 37554955 37581703 + sense 0.0
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+RP4-616B8.4 20 37590568 37590754 - sense 0.0
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+DHX35 20 37590942 37668366 + sense 0.0
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+NPM1P19 20 37606354 37607065 - sense 0.0
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+RP4-705O1.1 20 37842420 37853391 - sense 0.0
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+AL121588.1 20 37900183 37900258 + sense 0.0
+AL121588.1 20 37900183 37900258 + antisense 0.0
+ATG3P1 20 37957657 37958567 - sense 0.0
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+RN7SL680P 20 37977739 37978035 - sense 0.0
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+RN7SL194P 20 37981402 37981674 + sense 0.0
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+RP5-1031J8.1 20 38414363 38441871 + sense 0.0
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+HSPE1P1 20 38561564 38561881 - sense 0.0
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+RP11-101E14.2 20 38633119 38637171 + sense 0.0
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+RP11-101E14.3 20 38660227 38672531 + sense 0.0
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+AL009050.1 20 38731860 38731998 - sense 0.0
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+RP1-191L6.2 20 38749682 38754998 + sense 0.0
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+SNORD112 20 39045515 39045586 + sense 0.0
+SNORD112 20 39045515 39045586 + antisense 0.0
+MAFB 20 39314488 39317880 - sense 0.0
+MAFB 20 39314488 39317880 - antisense 0.0
+RP4-644L1.2 20 39326535 39327256 - sense 0.0
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+RNA5SP484 20 39482759 39482869 - sense 0.0
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+RNU2-52P 20 39652845 39653034 + sense 0.0
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+TOP1 20 39657458 39753127 + sense 0.0
+TOP1 20 39657458 39753127 + antisense 0.0
+RP1-1J6.2 20 39726969 39766643 - sense 0.0
+RP1-1J6.2 20 39726969 39766643 - antisense 0.0
+PLCG1 20 39765600 39811629 + sense 0.0
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+ZHX3 20 39807088 39946312 - sense 0.0
+ZHX3 20 39807088 39946312 - antisense 0.0
+RP3-511B24.6 20 39809096 39825427 + sense 0.0
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+RP3-511B24.5 20 39825287 39825578 - sense 0.0
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+RPL23AP81 20 39825331 39825797 + sense 0.0
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+RN7SL615P 20 39918922 39919217 - sense 0.0
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+RP3-450M14.1 20 39959763 39960300 + sense 0.0
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+LPIN3 20 39969560 39989222 + sense 0.0
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+EMILIN3 20 39988606 39995467 - sense 0.0
+EMILIN3 20 39988606 39995467 - antisense 0.0
+RP4-620E11.5 20 40011023 40011747 + sense 0.0
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+CHD6 20 40030741 40247133 - sense 0.0
+CHD6 20 40030741 40247133 - antisense 0.0
+RP4-620E11.4 20 40087994 40090584 - sense 0.0
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+RPL12P11 20 40176061 40176561 + sense 0.0
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+RNU6-1018P 20 40313625 40313730 - sense 0.0
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+Y_RNA 20 40328260 40328355 - sense 0.0
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+SNORA26 20 40341118 40341239 - sense 0.0
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+RP5-1121H13.4 20 40619780 40692609 + sense 0.0
+RP5-1121H13.4 20 40619780 40692609 + antisense 0.0
+RP5-1121H13.1 20 40625771 40628037 - sense 0.0
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+RP5-1121H13.3 20 40642674 40644118 - sense 0.0
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+PTPRT 20 40701392 41818610 - sense 0.0
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+RP4-730D4.1 20 41235334 41236199 + sense 0.0
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+RP1-232N11.2 20 41314044 41317202 + sense 0.0
+RP1-232N11.2 20 41314044 41317202 + antisense 0.0
+RP4-753D4.2 20 41597383 41600132 + sense 0.0
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+RN7SKP100 20 41691966 41692249 + sense 0.0
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+RP1-269M15.3 20 41818862 41830011 + sense 0.0
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+RN7SL666P 20 41850846 41851147 + sense 0.0
+RN7SL666P 20 41850846 41851147 + antisense 0.0
+PPIAP21 20 41859400 41859900 + sense 0.0
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+SCARNA15 20 41933195 41933319 + sense 0.0
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+RP5-862K6.4 20 42017282 42017681 - sense 0.0
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+RNU6-743P 20 42034113 42034218 + sense 0.0
+RNU6-743P 20 42034113 42034218 + antisense 0.0
+EIF4EBP2P1 20 42051836 42052178 - sense 0.0
+EIF4EBP2P1 20 42051836 42052178 - antisense 0.0
+Y_RNA 20 42079799 42079900 - sense 0.0
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+SRSF6 20 42086568 42092245 + sense 0.0
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+RNU6-1251P 20 42101653 42101759 + sense 0.0
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+L3MBTL1 20 42136320 42179590 + sense 0.0
+L3MBTL1 20 42136320 42179590 + antisense 0.0
+RP1-138B7.4 20 42151901 42152212 - sense 0.0
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+RP1-138B7.5 20 42178029 42179589 - sense 0.0
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+SGK2 20 42187608 42216877 + sense 0.0
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+IFT52 20 42219571 42275936 + sense 0.0
+IFT52 20 42219571 42275936 + antisense 0.0
+RPL27AP 20 42281163 42281931 + sense 0.0
+RPL27AP 20 42281163 42281931 + antisense 0.0
+MYBL2 20 42295754 42345136 + sense 0.0
+MYBL2 20 42295754 42345136 + antisense 0.0
+GTSF1L 20 42354804 42355638 - sense 0.0
+GTSF1L 20 42354804 42355638 - antisense 0.0
+RNU6-639P 20 42425077 42425183 - sense 0.0
+RNU6-639P 20 42425077 42425183 - antisense 0.0
+RP5-1030M6.3 20 42523360 42524108 + sense 0.0
+RP5-1030M6.3 20 42523360 42524108 + antisense 0.0
+TOX2 20 42543504 42698256 + sense 0.0
+TOX2 20 42543504 42698256 + antisense 0.0
+RN7SL443P 20 42635888 42636178 + sense 0.0
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+JPH2 20 42740335 42816218 - sense 0.0
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+OSER1 20 42825136 42839431 - sense 0.0
+OSER1 20 42825136 42839431 - antisense 0.0
+OSER1-AS1 20 42839600 42854667 + sense 0.0
+OSER1-AS1 20 42839600 42854667 + antisense 0.0
+GDAP1L1 20 42875887 42909013 + sense 0.0
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+FITM2 20 42931478 42939809 - sense 0.0
+FITM2 20 42931478 42939809 - antisense 0.0
+R3HDML 20 42965626 42979875 + sense 0.0
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+Y_RNA 20 42973479 42973569 + sense 0.0
+Y_RNA 20 42973479 42973569 + antisense 0.0
+RP5-881L22.5 20 42976192 42983825 - sense 0.0
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+HNF4A 20 42984340 43061485 + sense 0.0
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+HNF4A-AS1 20 43001386 43024346 - sense 0.0
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+RP5-881L22.6 20 43018264 43020177 - sense 0.0
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+MIR3646 20 43036760 43036843 + sense 0.0
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+AL132772.1 20 43053692 43053781 - sense 0.0
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+RP5-1013A22.5 20 43062837 43063236 + sense 0.0
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+RP5-1013A22.2 20 43077417 43078732 - sense 0.0
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+C20orf62 20 43080624 43093984 - sense 0.0
+C20orf62 20 43080624 43093984 - antisense 0.0
+RPL37AP1 20 43095204 43095482 - sense 0.0
+RPL37AP1 20 43095204 43095482 - antisense 0.0
+TTPAL 20 43104526 43123244 + sense 0.0
+TTPAL 20 43104526 43123244 + antisense 0.0
+SERINC3 20 43124862 43150750 - sense 0.0
+SERINC3 20 43124862 43150750 - antisense 0.0
+PKIG 20 43160426 43252888 + sense 0.0
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+Z97053.1 20 43234346 43248126 - sense 0.0
+Z97053.1 20 43234346 43248126 - antisense 0.0
+ADA 20 43248163 43280874 - sense 0.0
+ADA 20 43248163 43280874 - antisense 0.0
+RP11-445H22.3 20 43285092 43324737 - sense 0.0
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+RP11-445H22.4 20 43323533 43374662 - sense 0.0
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+WISP2 20 43343485 43357150 + sense 0.0
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+KCNK15 20 43374421 43379675 + sense 0.0
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+RIMS4 20 43380449 43438979 - sense 0.0
+RIMS4 20 43380449 43438979 - antisense 0.0
+RN7SL31P 20 43509479 43509775 - sense 0.0
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+YWHAB 20 43514317 43537173 + sense 0.0
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+PABPC1L 20 43538703 43587676 + sense 0.0
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+TOMM34 20 43570771 43589127 - sense 0.0
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+STK4-AS1 20 43592435 43595043 - sense 0.0
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+STK4 20 43595115 43708600 + sense 0.0
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+Y_RNA 20 43632989 43633095 + sense 0.0
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+KCNS1 20 43720951 43729753 - sense 0.0
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+WFDC5 20 43738093 43743813 - sense 0.0
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+WFDC12 20 43752066 43753106 - sense 0.0
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+PI3 20 43803517 43805185 + sense 0.0
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+SEMG1 20 43835638 43838413 + sense 0.0
+SEMG1 20 43835638 43838413 + antisense 0.0
+SEMG2 20 43849941 43853099 + sense 0.0
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+SLPI 20 43880880 43883205 - sense 0.0
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+MATN4 20 43922085 43937169 - sense 0.0
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+RBPJL 20 43935491 43945803 + sense 0.0
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+SDC4 20 43953928 43977064 - sense 0.0
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+SYS1 20 43990577 44005438 + sense 0.0
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+SYS1-DBNDD2 20 43991840 44039250 + sense 0.0
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+TP53TG5 20 44002526 44036529 - sense 0.0
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+DBNDD2 20 44034697 44039250 + sense 0.0
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+AL031663.2 20 44074071 44077220 + sense 0.0
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+RP3-461P17.10 20 44076042 44076982 + sense 0.0
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+AL031663.1 20 44095910 44107452 - sense 0.0
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+WFDC2 20 44098346 44110172 + sense 0.0
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+RPL5P2 20 44119458 44120311 - sense 0.0
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+SPINT3 20 44141101 44144264 - sense 0.0
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+EPPIN 20 44165625 44176391 - sense 0.0
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+HSPD1P21 20 44168622 44168866 - sense 0.0
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+WFDC8 20 44179792 44207965 - sense 0.0
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+CCNB1IP1P2 20 44196629 44197446 - sense 0.0
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+WFDC9 20 44236578 44259907 - sense 0.0
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+WFDC10A 20 44258165 44259835 + sense 0.0
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+RPS2P7 20 44269125 44270009 - sense 0.0
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+WFDC11 20 44277202 44298909 - sense 0.0
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+WFDC10B 20 44313292 44333658 - sense 0.0
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+WFDC13 20 44330655 44337456 + sense 0.0
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+MIR3617 20 44333741 44333819 - sense 0.0
+MIR3617 20 44333741 44333819 - antisense 0.0
+SPINT4 20 44350990 44354469 + sense 0.0
+SPINT4 20 44350990 44354469 + antisense 0.0
+HNRNPA1P3 20 44374376 44374926 - sense 0.0
+HNRNPA1P3 20 44374376 44374926 - antisense 0.0
+WFDC3 20 44376583 44420571 - sense 0.0
+WFDC3 20 44376583 44420571 - antisense 0.0
+SPINT5P 20 44378559 44378713 + sense 0.0
+SPINT5P 20 44378559 44378713 + antisense 0.0
+RNU6ATAC38P 20 44407337 44407462 + sense 0.0
+RNU6ATAC38P 20 44407337 44407462 + antisense 0.0
+DNTTIP1 20 44420576 44440066 + sense 0.0
+DNTTIP1 20 44420576 44440066 + antisense 0.0
+UBE2C 20 44441215 44445596 + sense 0.0
+UBE2C 20 44441215 44445596 + antisense 0.0
+TNNC2 20 44451853 44462384 - sense 0.0
+TNNC2 20 44451853 44462384 - antisense 0.0
+SNX21 20 44462449 44471914 + sense 0.0
+SNX21 20 44462449 44471914 + antisense 0.0
+ACOT8 20 44470360 44486045 - sense 0.0
+ACOT8 20 44470360 44486045 - antisense 0.0
+ZSWIM3 20 44486256 44507761 + sense 0.0
+ZSWIM3 20 44486256 44507761 + antisense 0.0
+ZSWIM1 20 44509866 44513905 + sense 0.0
+ZSWIM1 20 44509866 44513905 + antisense 0.0
+SPATA25 20 44515128 44516274 - sense 0.0
+SPATA25 20 44515128 44516274 - antisense 0.0
+NEURL2 20 44517264 44519926 - sense 0.0
+NEURL2 20 44517264 44519926 - antisense 0.0
+CTSA 20 44518783 44527459 + sense 0.0
+CTSA 20 44518783 44527459 + antisense 0.0
+RP3-337O18.9 20 44521333 44522058 - sense 0.0
+RP3-337O18.9 20 44521333 44522058 - antisense 0.0
+PLTP 20 44527399 44540794 - sense 0.0
+PLTP 20 44527399 44540794 - antisense 0.0
+PCIF1 20 44563267 44576662 + sense 0.0
+PCIF1 20 44563267 44576662 + antisense 0.0
+ZNF335 20 44577292 44600833 - sense 0.0
+ZNF335 20 44577292 44600833 - antisense 0.0
+FTLP1 20 44603888 44604714 - sense 0.0
+FTLP1 20 44603888 44604714 - antisense 0.0
+MMP9 20 44637547 44645200 + sense 0.0
+MMP9 20 44637547 44645200 + antisense 0.0
+RP11-465L10.10 20 44642141 44650712 - sense 0.0
+RP11-465L10.10 20 44642141 44650712 - antisense 0.0
+AL162458.1 20 44644111 44644231 + sense 0.0
+AL162458.1 20 44644111 44644231 + antisense 0.0
+SLC12A5 20 44650356 44688784 + sense 0.0
+SLC12A5 20 44650356 44688784 + antisense 0.0
+NCOA5 20 44689624 44718591 - sense 0.0
+NCOA5 20 44689624 44718591 - antisense 0.0
+RPL13P2 20 44728157 44728815 + sense 0.0
+RPL13P2 20 44728157 44728815 + antisense 0.0
+CD40 20 44746911 44758502 + sense 0.0
+CD40 20 44746911 44758502 + antisense 0.0
+RP5-998H6.2 20 44797043 44799876 - sense 0.0
+RP5-998H6.2 20 44797043 44799876 - antisense 0.0
+CDH22 20 44802372 44937137 - sense 0.0
+CDH22 20 44802372 44937137 - antisense 0.0
+SLC35C2 20 44978167 44993043 - sense 0.0
+SLC35C2 20 44978167 44993043 - antisense 0.0
+ELMO2 20 44994688 45061704 - sense 0.0
+ELMO2 20 44994688 45061704 - antisense 0.0
+ZNF663P 20 45042867 45087915 - sense 0.0
+ZNF663P 20 45042867 45087915 - antisense 0.0
+MKRN7P 20 45092541 45093763 - sense 0.0
+MKRN7P 20 45092541 45093763 - antisense 0.0
+ZNF840 20 45113100 45121279 + sense 0.0
+ZNF840 20 45113100 45121279 + antisense 0.0
+ZNF334 20 45129701 45142198 - sense 0.0
+ZNF334 20 45129701 45142198 - antisense 0.0
+OCSTAMP 20 45169585 45179213 - sense 0.0
+OCSTAMP 20 45169585 45179213 - antisense 0.0
+SLC13A3 20 45186463 45304714 - sense 0.0
+SLC13A3 20 45186463 45304714 - antisense 0.0
+TP53RK 20 45313004 45318418 - sense 0.0
+TP53RK 20 45313004 45318418 - antisense 0.0
+RP1-28H20.3 20 45318298 45318928 + sense 0.0
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+SLC2A10 20 45338126 45364965 + sense 0.0
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+AL031055.1 20 45439477 45439561 - sense 0.0
+AL031055.1 20 45439477 45439561 - antisense 0.0
+RN7SKP33 20 45487972 45488311 + sense 0.0
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+RP11-323C15.1 20 45492202 45492743 - sense 0.0
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+EYA2 20 45523263 45817492 + sense 0.0
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+RP11-323C15.2 20 45529782 45530365 - sense 0.0
+RP11-323C15.2 20 45529782 45530365 - antisense 0.0
+GAPDHP54 20 45626235 45627127 + sense 0.0
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+RP5-1050K3.3 20 45700504 45700875 + sense 0.0
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+RP5-890O15.3 20 45789477 45790339 - sense 0.0
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+MIR3616 20 45795609 45795700 + sense 0.0
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+ZMYND8 20 45837859 45985567 - sense 0.0
+ZMYND8 20 45837859 45985567 - antisense 0.0
+RN7SL243P 20 45936797 45937126 - sense 0.0
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+AL031666.1 20 45943269 45943336 - sense 0.0
+AL031666.1 20 45943269 45943336 - antisense 0.0
+AL031666.2 20 45947246 45949467 + sense 0.0
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+RP4-569M23.4 20 45976881 45977886 - sense 0.0
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+RP4-569M23.2 20 45981305 45983377 + sense 0.0
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+RP1-148H17.1 20 46020673 46041071 - sense 0.0
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+RPL35AP 20 46106958 46107754 - sense 0.0
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+RNU6-497P 20 46113022 46113125 - sense 0.0
+RNU6-497P 20 46113022 46113125 - antisense 0.0
+RNU6-563P 20 46121722 46121829 - sense 0.0
+RNU6-563P 20 46121722 46121829 - antisense 0.0
+NCOA3 20 46130601 46285621 + sense 0.0
+NCOA3 20 46130601 46285621 + antisense 0.0
+AL021394.1 20 46199679 46199759 + sense 0.0
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+RP5-1049G16.4 20 46259010 46260182 - sense 0.0
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+SULF2 20 46285092 46415360 - sense 0.0
+SULF2 20 46285092 46415360 - antisense 0.0
+CTD-2653D5.1 20 46306645 46315041 + sense 0.0
+CTD-2653D5.1 20 46306645 46315041 + antisense 0.0
+RNU7-173P 20 46455713 46455788 - sense 0.0
+RNU7-173P 20 46455713 46455788 - antisense 0.0
+SRMP1 20 46488532 46489416 + sense 0.0
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+RNA5SP486 20 46501935 46502017 + sense 0.0
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+RNU7-92P 20 46533092 46533167 + sense 0.0
+RNU7-92P 20 46533092 46533167 + antisense 0.0
+RP11-347D21.1 20 46579543 46580799 + sense 0.0
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+RP11-347D21.2 20 46586766 46587347 + sense 0.0
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+RP11-347D21.3 20 46609232 46617488 - sense 0.0
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+RP11-347D21.4 20 46612148 46613057 + sense 0.0
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+SNORD36 20 46764686 46764766 - sense 0.0
+SNORD36 20 46764686 46764766 - antisense 0.0
+LINC00494 20 46988693 46999372 + sense 0.0
+LINC00494 20 46988693 46999372 + antisense 0.0
+RP1-66N13.1 20 47012066 47013638 - sense 0.0
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+RNU7-144P 20 47122480 47122555 - sense 0.0
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+PREX1 20 47240790 47444420 - sense 0.0
+PREX1 20 47240790 47444420 - antisense 0.0
+AL035106.1 20 47355867 47355985 - sense 0.0
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+ARFGEF2 20 47538427 47653230 + sense 0.0
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+SNAP23P 20 47654894 47655139 - sense 0.0
+SNAP23P 20 47654894 47655139 - antisense 0.0
+RP1-155G6.4 20 47657000 47662581 - sense 0.0
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+CSE1L 20 47662849 47713489 + sense 0.0
+CSE1L 20 47662849 47713489 + antisense 0.0
+STAU1 20 47729878 47804904 - sense 0.0
+STAU1 20 47729878 47804904 - antisense 0.0
+ARPC3P1 20 47751017 47751549 + sense 0.0
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+DDX27 20 47835884 47860614 + sense 0.0
+DDX27 20 47835884 47860614 + antisense 0.0
+ZNFX1 20 47854483 47894963 - sense 0.0
+ZNFX1 20 47854483 47894963 - antisense 0.0
+ZFAS1 20 47894715 47905797 + sense 0.0
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+SNORD12C 20 47895477 47895565 + sense 0.0
+SNORD12C 20 47895477 47895565 + antisense 0.0
+SNORD12B 20 47896856 47896946 + sense 0.0
+SNORD12B 20 47896856 47896946 + antisense 0.0
+SNORD12 20 47897220 47897309 + sense 0.0
+SNORD12 20 47897220 47897309 + antisense 0.0
+KCNB1 20 47980414 48099184 - sense 0.0
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+PTGIS 20 48120411 48184683 - sense 0.0
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+AL118525.1 20 48203218 48203311 + sense 0.0
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+B4GALT5 20 48249482 48330415 - sense 0.0
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+RN7SL197P 20 48338486 48338782 + sense 0.0
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+SNRPFP1 20 48346128 48346379 - sense 0.0
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+RNU6-919P 20 48411348 48411451 + sense 0.0
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+SLC9A8 20 48429250 48508779 + sense 0.0
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+RNU7-72P 20 48444529 48444590 + sense 0.0
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+RP5-1041C10.3 20 48445662 48447622 + sense 0.0
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+SPATA2 20 48519928 48532080 - sense 0.0
+SPATA2 20 48519928 48532080 - antisense 0.0
+Y_RNA 20 48537134 48537231 - sense 0.0
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+RNF114 20 48552948 48570429 + sense 0.0
+RNF114 20 48552948 48570429 + antisense 0.0
+snoU13 20 48556833 48556937 - sense 0.0
+snoU13 20 48556833 48556937 - antisense 0.0
+KRT18P4 20 48573282 48574569 + sense 0.0
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+RNU6-147P 20 48588643 48588749 + sense 0.0
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+SNAI1 20 48599536 48605423 + sense 0.0
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+TRERNA1 20 48657253 48658041 - sense 0.0
+TRERNA1 20 48657253 48658041 - antisense 0.0
+TMEM189-UBE2V1 20 48697661 48770174 - sense 0.0
+TMEM189-UBE2V1 20 48697661 48770174 - antisense 0.0
+UBE2V1 20 48697661 48732496 - sense 0.0
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+TMEM189 20 48697663 48770335 - sense 0.0
+TMEM189 20 48697663 48770335 - antisense 0.0
+RP11-112L6.3 20 48780001 48782639 - sense 0.0
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+RP11-112L6.2 20 48782899 48788279 + sense 0.0
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+RP11-112L6.4 20 48789087 48793096 + sense 0.0
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+CEBPB 20 48807376 48809212 + sense 0.0
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+RP11-290F20.3 20 48884023 48896332 + sense 0.0
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+RP11-290F20.1 20 48909257 48931459 + sense 0.0
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+RP11-290F20.2 20 48927248 48937879 - sense 0.0
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+RN7SL636P 20 49045729 49046020 - sense 0.0
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+COX6CP2 20 49096304 49096528 + sense 0.0
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+PTPN1 20 49126891 49201299 + sense 0.0
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+RN7SL672P 20 49174221 49174535 - sense 0.0
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+Y_RNA 20 49179546 49179647 + sense 0.0
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+RP4-530I15.9 20 49187512 49194578 - sense 0.0
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+MIR645 20 49202323 49202416 + sense 0.0
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+FAM65C 20 49202645 49308065 - sense 0.0
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+MIR1302-5 20 49231173 49231322 - sense 0.0
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+RPL36P2 20 49237300 49237614 + sense 0.0
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+RP4-530I15.6 20 49262008 49278812 + sense 0.0
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+PARD6B 20 49348081 49373332 + sense 0.0
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+BCAS4 20 49411431 49493714 + sense 0.0
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+TMSB4XP6 20 49457152 49457286 - sense 0.0
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+AL133228.1 20 49477445 49477523 + sense 0.0
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+ADNP 20 49505585 49547958 - sense 0.0
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+PSMD10P1 20 49530268 49530948 + sense 0.0
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+RP5-914P20.5 20 49547521 49561671 + sense 0.0
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+DPM1 20 49551404 49575092 - sense 0.0
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+AL034553.1 20 49555183 49555269 + sense 0.0
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+MOCS3 20 49575363 49577820 + sense 0.0
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+RP5-955M13.4 20 49615907 49626556 + sense 0.0
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+KCNG1 20 49620193 49639666 - sense 0.0
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+RPSAP1 20 49747325 49748204 - sense 0.0
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+AL035457.1 20 49794042 49794136 + sense 0.0
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+AL079339.1 20 49993772 49993858 - sense 0.0
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+NFATC2 20 50003494 50179370 - sense 0.0
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+MIR3194 20 50069442 50069514 - sense 0.0
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+ATP9A 20 50213053 50385173 - sense 0.0
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+RP5-827A12.2 20 50351072 50351606 + sense 0.0
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+SALL4 20 50400581 50419059 - sense 0.0
+SALL4 20 50400581 50419059 - antisense 0.0
+RP5-1112F19.2 20 50448336 50479451 - sense 0.0
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+RNU6-347P 20 50518830 50518934 + sense 0.0
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+RNU7-6P 20 50521508 50521569 + sense 0.0
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+RN7SL603P 20 50557083 50557372 - sense 0.0
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+ZFP64 20 50668202 50820847 - sense 0.0
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+ERP29P1 20 50726883 50727588 - sense 0.0
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+RP4-723E3.1 20 50827184 51266970 + sense 0.0
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+RP4-583K8.1 20 51068003 51072158 - sense 0.0
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+RP5-1022J11.2 20 51104461 51117130 - sense 0.0
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+MRPS33P4 20 51127791 51128107 + sense 0.0
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+RP4-715N11.2 20 51288456 51307468 + sense 0.0
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+RP11-80K6.2 20 51474877 51479394 - sense 0.0
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+RPL36P1 20 51506701 51506925 + sense 0.0
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+TSHZ2 20 51588946 52111869 + sense 0.0
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+AL050316.1 20 51679156 51679240 + sense 0.0
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+RN7SKP184 20 51714191 51714523 + sense 0.0
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+RP11-15M15.1 20 51785182 51796089 - sense 0.0
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+RP11-15M15.2 20 51812768 51825244 - sense 0.0
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+RP4-669H2.1 20 52014199 52029448 - sense 0.0
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+PPIAP10 20 52037738 52038195 + sense 0.0
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+AL354993.1 20 52105495 52106164 + sense 0.0
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+Y_RNA 20 52161154 52161264 + sense 0.0
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+ZNF217 20 52183604 52226446 - sense 0.0
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+AC005808.3 20 52224893 52251129 + sense 0.0
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+SUMO1P1 20 52491791 52492096 - sense 0.0
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+BCAS1 20 52553316 52687304 - sense 0.0
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+MIR4756 20 52684947 52685024 - sense 0.0
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+CYP24A1 20 52769988 52790512 - sense 0.0
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+PFDN4 20 52824386 52844591 + sense 0.0
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+DOK5 20 53092136 53267710 + sense 0.0
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+RNU4ATAC7P 20 53476227 53476351 - sense 0.0
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+RPL12P4 20 53691155 53691685 + sense 0.0
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+RP5-1010E17.2 20 54036874 54043735 - sense 0.0
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+RP5-1010E17.1 20 54039549 54084752 + sense 0.0
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+CBLN4 20 54572496 54580528 - sense 0.0
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+RNA5SP487 20 54780108 54780229 - sense 0.0
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+MC3R 20 54823788 54824871 + sense 0.0
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+RP11-380D15.2 20 54842928 54844287 + sense 0.0
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+RP11-380D15.3 20 54871023 54874216 - sense 0.0
+RP11-380D15.3 20 54871023 54874216 - antisense 0.0
+FAM210B 20 54933971 54943719 + sense 0.0
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+AURKA 20 54944445 54967393 - sense 0.0
+AURKA 20 54944445 54967393 - antisense 0.0
+CSTF1 20 54967427 54979518 + sense 0.0
+CSTF1 20 54967427 54979518 + antisense 0.0
+CASS4 20 54987168 55034396 + sense 0.0
+CASS4 20 54987168 55034396 + antisense 0.0
+RPL39P 20 55034484 55034639 - sense 0.0
+RPL39P 20 55034484 55034639 - antisense 0.0
+AL121914.1 20 55035322 55035413 - sense 0.0
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+RTFDC1 20 55043647 55093943 + sense 0.0
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+snoU13 20 55050699 55050801 + sense 0.0
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+GCNT7 20 55066548 55100981 - sense 0.0
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+FAM209A 20 55092243 55101198 + sense 0.0
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+FAM209B 20 55108302 55111576 + sense 0.0
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+RPS4XP3 20 55176757 55177169 + sense 0.0
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+U3 20 55182733 55182849 + sense 0.0
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+TFAP2C 20 55204358 55214339 + sense 0.0
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+RNU6-1146P 20 55242486 55242587 + sense 0.0
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+RN7SL170P 20 55263457 55263749 + sense 0.0
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+PTMAP6 20 55275893 55276570 - sense 0.0
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+AL133232.1 20 55293942 55294025 + sense 0.0
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+AL117380.2 20 55575143 55575213 + sense 0.0
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+AL117380.1 20 55629846 55629897 + sense 0.0
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+Y_RNA 20 55886910 55887014 + sense 0.0
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+SPO11 20 55904815 55919050 + sense 0.0
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+RAE1 20 55926066 55954267 + sense 0.0
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+C20orf85 20 56725960 56736206 + sense 0.0
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+STX16 20 57226328 57254582 + sense 0.0
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+MIR298 20 57393281 57393368 - sense 0.0
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+NELFCD 20 57556263 57570188 + sense 0.0
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+TUBB1 20 57594309 57601709 + sense 0.0
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+ATP5E 20 57600522 57607437 - sense 0.0
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+SLMO2 20 57608200 57617964 - sense 0.0
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+MRPS16P2 20 57688279 57688686 + sense 0.0
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+EDN3 20 57875482 57901047 + sense 0.0
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+FAM217B 20 58508819 58523735 + sense 0.0
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+CDH26 20 58533471 58609066 + sense 0.0
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+ADRM1 20 60877149 60883918 + sense 0.0
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+MRGBP 20 61427805 61431945 + sense 0.0
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+OGFR-AS1 20 61431979 61436939 - sense 0.0
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+OGFR 20 61436187 61445352 + sense 0.0
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+COL9A3 20 61447596 61472511 + sense 0.0
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+GID8 20 61569471 61576996 + sense 0.0
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+BHLHE23 20 61637331 61638387 - sense 0.0
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+YTHDF1 20 61826781 61847586 - sense 0.0
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+NKAIN4 20 61872136 61904046 - sense 0.0
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+C20orf195 20 62184373 62188061 + sense 0.0
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+RTEL1 20 62289163 62328416 + sense 0.0
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+LIME1 20 62366815 62370456 + sense 0.0
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+SLC2A4RG 20 62371214 62374858 + sense 0.0
+SLC2A4RG 20 62371214 62374858 + antisense 0.0
+ZBTB46 20 62375019 62462597 - sense 0.0
+ZBTB46 20 62375019 62462597 - antisense 0.0
+RP4-583P15.10 20 62376042 62377311 + sense 0.0
+RP4-583P15.10 20 62376042 62377311 + antisense 0.0
+RP4-583P15.11 20 62439429 62447874 + sense 0.0
+RP4-583P15.11 20 62439429 62447874 + antisense 0.0
+AL158091.1 20 62474779 62475273 - sense 0.0
+AL158091.1 20 62474779 62475273 - antisense 0.0
+ABHD16B 20 62492566 62494341 + sense 0.0
+ABHD16B 20 62492566 62494341 + antisense 0.0
+C20ORF135 20 62492879 62493217 - sense 0.0
+C20ORF135 20 62492879 62493217 - antisense 0.0
+TPD52L2 20 62496596 62522898 + sense 0.0
+TPD52L2 20 62496596 62522898 + antisense 0.0
+DNAJC5 20 62526518 62567384 + sense 0.0
+DNAJC5 20 62526518 62567384 + antisense 0.0
+RNU1-134P 20 62540308 62540472 + sense 0.0
+RNU1-134P 20 62540308 62540472 + antisense 0.0
+MIR941-2 20 62550834 62550950 + sense 0.0
+MIR941-2 20 62550834 62550950 + antisense 0.0
+MIR941-3 20 62551085 62551201 + sense 0.0
+MIR941-3 20 62551085 62551201 + antisense 0.0
+MIR941-1 20 62551365 62551481 + sense 0.0
+MIR941-1 20 62551365 62551481 + antisense 0.0
+UCKL1 20 62571186 62587769 - sense 0.0
+UCKL1 20 62571186 62587769 - antisense 0.0
+MIR1914 20 62572818 62572897 - sense 0.0
+MIR1914 20 62572818 62572897 - antisense 0.0
+MIR647 20 62573984 62574079 - sense 0.0
+MIR647 20 62573984 62574079 - antisense 0.0
+AL118506.1 20 62585007 62585495 + sense 0.0
+AL118506.1 20 62585007 62585495 + antisense 0.0
+ZNF512B 20 62588055 62680113 - sense 0.0
+ZNF512B 20 62588055 62680113 - antisense 0.0
+SAMD10 20 62605466 62611361 - sense 0.0
+SAMD10 20 62605466 62611361 - antisense 0.0
+PRPF6 20 62612488 62664453 + sense 0.0
+PRPF6 20 62612488 62664453 + antisense 0.0
+LINC00176 20 62665697 62671315 + sense 0.0
+LINC00176 20 62665697 62671315 + antisense 0.0
+SOX18 20 62679076 62680994 - sense 0.0
+SOX18 20 62679076 62680994 - antisense 0.0
+TCEA2 20 62681189 62703700 + sense 0.0
+TCEA2 20 62681189 62703700 + antisense 0.0
+RP13-152O15.5 20 62688156 62688437 + sense 0.0
+RP13-152O15.5 20 62688156 62688437 + antisense 0.0
+RGS19 20 62704534 62711323 - sense 0.0
+RGS19 20 62704534 62711323 - antisense 0.0
+OPRL1 20 62711526 62731996 + sense 0.0
+OPRL1 20 62711526 62731996 + antisense 0.0
+C20orf201 20 62714733 62715712 - sense 0.0
+C20orf201 20 62714733 62715712 - antisense 0.0
+NPBWR2 20 62737173 62738524 - sense 0.0
+NPBWR2 20 62737173 62738524 - antisense 0.0
+MYT1 20 62783144 62873604 + sense 0.0
+MYT1 20 62783144 62873604 + antisense 0.0
+PCMTD2 20 62887094 62926855 + sense 0.0
+PCMTD2 20 62887094 62926855 + antisense 0.0
+CICP4 20 62921540 62924351 - sense 0.0
+CICP4 20 62921540 62924351 - antisense 0.0
+LINC00266-1 20 62921738 62944485 + sense 0.0
+LINC00266-1 20 62921738 62944485 + antisense 0.0
diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv
new file mode 100644
index 00000000000..484e1891b7a
--- /dev/null
+++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv
@@ -0,0 +1,2637 @@
+#input_bam_0=/Users/ckachuli/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam
+#annotation_file=/Users/ckachuli/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3
+gene_label contig start stop strand sense_antisense NA12878.star_counts
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+DEFB125 20 67891 77735 + antisense 0.0
+DEFB126 20 123010 126392 + sense 0.0
+DEFB126 20 123010 126392 + antisense 0.0
+DEFB127 20 138111 139804 + sense 0.0
+DEFB127 20 138111 139804 + antisense 0.0
+DEFB128 20 168494 170322 - sense 0.0
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+AL360078.1 20 172864 172940 - sense 0.0
+AL360078.1 20 172864 172940 - antisense 0.0
+DEFB129 20 207899 210527 + sense 0.0
+DEFB129 20 207899 210527 + antisense 0.0
+DEFB132 20 238377 241737 + sense 0.0
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+RP5-1103G7.10 20 247827 249498 + sense 0.0
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+C20orf96 20 251504 271390 - sense 0.0
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+ZCCHC3 20 277737 280965 + sense 0.0
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+AL034548.1 20 278214 280961 + sense 0.0
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+RP5-1103G7.4 20 300957 328868 - sense 0.0
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+SOX12 20 306207 310865 + sense 0.0
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+NRSN2 20 327426 340304 + sense 0.0
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+TRIB3 20 361261 378203 + sense 0.0
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+RBCK1 20 388142 411610 + sense 0.0
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+TBC1D20 20 416124 443197 - sense 0.0
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+Y_RNA 20 431307 431406 + sense 0.0
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+TCF15 20 584441 591042 - sense 0.0
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+SCRT2 20 642240 656823 - sense 0.0
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+FAM110A 20 814358 838106 + sense 0.0
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+RPS10L 20 820090 820620 - sense 0.0
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+ANGPT4 20 853296 896977 - sense 0.0
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+PSMF1 20 1093906 1160596 + sense 0.0
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+ACTG1P3 20 1141228 1142341 + sense 0.0
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+TMEM74B 20 1161205 1166059 - sense 0.0
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+RAD21L1 20 1206700 1277065 + sense 0.0
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+NSFL1C 20 1422807 1454487 - sense 0.0
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+SIRPB2 20 1451386 1472233 - sense 0.0
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+AL109658.1 20 1469195 1469292 + sense 0.0
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+RNU6-917P 20 1509702 1509805 - sense 0.0
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+SIRPD 20 1514897 1539489 - sense 0.0
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+SIRPG 20 1609798 1638425 - sense 0.0
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+SIRPB3P 20 1645929 1688846 - sense 0.0
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+RN7SL561P 20 1647006 1647284 + sense 0.0
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+RP4-673D20.6 20 1737402 1739586 - sense 0.0
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+RP4-684O24.5 20 1927892 1988163 + sense 0.0
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+PDYN 20 1959403 1974732 - sense 0.0
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+RPL7P2 20 2056201 2056468 + sense 0.0
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+STK35 20 2082257 2157684 + sense 0.0
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+AL121899.1 20 2137858 2137927 - sense 0.0
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+SNRPB 20 2442280 2451499 - sense 30.53
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+SNORD119 20 2443608 2443683 - sense 0.0
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+RP4-734P14.4 20 2447858 2489553 - sense 20.63
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+ZNF343 20 2462463 2505348 - sense 10.31
+ZNF343 20 2462463 2505348 - antisense 263.29
+TMC2 20 2517253 2622430 + sense 1.6
+TMC2 20 2517253 2622430 + antisense 0.0
+NOP56 20 2632791 2639039 + sense 113.51
+NOP56 20 2632791 2639039 + antisense 2051.71
+MIR1292 20 2633423 2633488 + sense 0.05
+MIR1292 20 2633423 2633488 + antisense 1.58
+SNORD110 20 2634858 2634932 + sense 0.0
+SNORD110 20 2634858 2634932 + antisense 10.78
+SNORA51 20 2635713 2635844 + sense 1.02
+SNORA51 20 2635713 2635844 + antisense 6.12
+SNORD86 20 2636743 2636828 + sense 2.5
+SNORD86 20 2636743 2636828 + antisense 42.72
+SNORD56 20 2637270 2637340 + sense 0.35
+SNORD56 20 2637270 2637340 + antisense 5.53
+SNORD57 20 2637585 2637656 + sense 0.98
+SNORD57 20 2637585 2637656 + antisense 9.69
+IDH3B 20 2639041 2644865 - sense 0.0
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+EBF4 20 2673524 2740753 + sense 0.0
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+AL035460.1 20 2677351 2677781 + sense 0.0
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+RPL19P1 20 2761260 2761687 + sense 0.0
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+C20orf141 20 2795633 2796479 + sense 0.0
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+GNRH2 20 3024268 3026393 + sense 0.0
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+OXT 20 3052266 3053163 + sense 0.0
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+ITPA 20 3189514 3204516 + sense 0.0
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+ATRN 20 3451687 3631769 + sense 0.0
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+SF3A3P1 20 3470176 3471652 - sense 0.0
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+GFRA4 20 3639939 3644046 - sense 0.0
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+ADRA1D 20 4201329 4229721 - sense 0.0
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+C20orf196 20 5731039 5844558 + sense 0.0
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+RNU1-55P 20 5870701 5870858 + sense 0.0
+RNU1-55P 20 5870701 5870858 + antisense 0.0
+CHGB 20 5892076 5906007 + sense 0.0
+CHGB 20 5892076 5906007 + antisense 0.0
+RP5-967N21.2 20 5908731 5909964 - sense 0.0
+RP5-967N21.2 20 5908731 5909964 - antisense 0.0
+TRMT6 20 5917881 5931182 - sense 0.0
+TRMT6 20 5917881 5931182 - antisense 0.0
+MCM8 20 5931298 5975852 + sense 0.0
+MCM8 20 5931298 5975852 + antisense 0.0
+Y_RNA 20 5945184 5945296 + sense 0.0
+Y_RNA 20 5945184 5945296 + antisense 0.0
+RP5-967N21.7 20 5945826 5946157 + sense 0.0
+RP5-967N21.7 20 5945826 5946157 + antisense 0.0
+RN7SL498P 20 5982379 5982674 + sense 0.0
+RN7SL498P 20 5982379 5982674 + antisense 0.0
+CRLS1 20 5986736 6020699 + sense 0.0
+CRLS1 20 5986736 6020699 + antisense 0.0
+LRRN4 20 6021424 6034695 - sense 0.0
+LRRN4 20 6021424 6034695 - antisense 0.0
+FERMT1 20 6055492 6104191 - sense 0.0
+FERMT1 20 6055492 6104191 - antisense 0.0
+TARDBPP1 20 6181636 6182838 - sense 0.0
+TARDBPP1 20 6181636 6182838 - antisense 0.0
+RP4-775C13.1 20 6194346 6196028 + sense 0.0
+RP4-775C13.1 20 6194346 6196028 + antisense 0.0
+RP4-775C13.2 20 6199846 6200090 + sense 0.0
+RP4-775C13.2 20 6199846 6200090 + antisense 0.0
+AL109618.1 20 6209441 6209595 - sense 0.0
+AL109618.1 20 6209441 6209595 - antisense 0.0
+CASC20 20 6427370 6509106 + sense 0.0
+CASC20 20 6427370 6509106 + antisense 0.0
+RP5-859D4.3 20 6711905 6716783 - sense 0.0
+RP5-859D4.3 20 6711905 6716783 - antisense 0.0
+BMP2 20 6748311 6760927 + sense 0.0
+BMP2 20 6748311 6760927 + antisense 0.0
+snoR26 20 6841661 6841755 + sense 0.0
+snoR26 20 6841661 6841755 + antisense 0.0
+RP4-764O22.1 20 7050261 7127303 + sense 0.0
+RP4-764O22.1 20 7050261 7127303 + antisense 0.0
+RP4-764O22.2 20 7127114 7234849 - sense 0.0
+RP4-764O22.2 20 7127114 7234849 - antisense 0.0
+RP11-19D2.1 20 7237227 7238861 - sense 0.0
+RP11-19D2.1 20 7237227 7238861 - antisense 0.0
+RP11-19D2.2 20 7282703 7288079 - sense 0.0
+RP11-19D2.2 20 7282703 7288079 - antisense 0.0
+RP5-988G17.1 20 7328114 7348279 + sense 0.0
+RP5-988G17.1 20 7328114 7348279 + antisense 0.0
+RN7SL547P 20 7614211 7614498 - sense 0.0
+RN7SL547P 20 7614211 7614498 - antisense 0.0
+AL031653.1 20 7677533 7677624 - sense 0.0
+AL031653.1 20 7677533 7677624 - antisense 0.0
+RP5-836E8.1 20 7812445 7812969 - sense 0.0
+RP5-836E8.1 20 7812445 7812969 - antisense 0.0
+HAO1 20 7863628 7921121 - sense 0.0
+HAO1 20 7863628 7921121 - antisense 0.0
+TMX4 20 7957995 8000476 - sense 0.0
+TMX4 20 7957995 8000476 - antisense 0.0
+RP5-971N18.3 20 7999870 8024159 + sense 0.0
+RP5-971N18.3 20 7999870 8024159 + antisense 0.0
+PHKBP1 20 8078471 8080421 - sense 0.0
+PHKBP1 20 8078471 8080421 - antisense 0.0
+PLCB1 20 8112824 8949003 + sense 0.0
+PLCB1 20 8112824 8949003 + antisense 0.0
+PLCB1-IT1 20 8229351 8237564 + sense 0.0
+PLCB1-IT1 20 8229351 8237564 + antisense 0.0
+AL031655.1 20 8589827 8589912 + sense 0.0
+AL031655.1 20 8589827 8589912 + antisense 0.0
+AL031655.2 20 8590801 8590887 - sense 0.0
+AL031655.2 20 8590801 8590887 - antisense 0.0
+RNU105B 20 8811833 8812040 + sense 0.0
+RNU105B 20 8811833 8812040 + antisense 0.0
+RP5-859I17.2 20 8910542 8910685 - sense 0.0
+RP5-859I17.2 20 8910542 8910685 - antisense 0.0
+AL121898.1 20 9047481 9047555 - sense 0.0
+AL121898.1 20 9047481 9047555 - antisense 0.0
+PLCB4 20 9049410 9461889 + sense 0.0
+PLCB4 20 9049410 9461889 + antisense 0.0
+RP5-1119D9.4 20 9485827 9495645 - sense 0.0
+RP5-1119D9.4 20 9485827 9495645 - antisense 0.0
+LAMP5 20 9495005 9511171 + sense 0.0
+LAMP5 20 9495005 9511171 + antisense 0.0
+PAK7 20 9518036 9819689 - sense 0.0
+PAK7 20 9518036 9819689 - antisense 0.0
+RP5-986I17.2 20 9556255 9558336 + sense 0.0
+RP5-986I17.2 20 9556255 9558336 + antisense 0.0
+RP5-839B4.8 20 9966736 9987764 + sense 0.0
+RP5-839B4.8 20 9966736 9987764 + antisense 0.0
+ANKEF1 20 9966774 10037410 + sense 0.0
+ANKEF1 20 9966774 10037410 + antisense 0.0
+SNAP25-AS1 20 10002620 10349424 - sense 0.0
+SNAP25-AS1 20 10002620 10349424 - antisense 0.0
+AL109754.1 20 10036968 10037063 + sense 0.0
+AL109754.1 20 10036968 10037063 + antisense 0.0
+RP11-416N4.4 20 10154168 10177638 + sense 0.0
+RP11-416N4.4 20 10154168 10177638 + antisense 0.0
+RP11-416N4.1 20 10160883 10166423 + sense 0.0
+RP11-416N4.1 20 10160883 10166423 + antisense 0.0
+SNAP25 20 10199478 10288066 + sense 0.0
+SNAP25 20 10199478 10288066 + antisense 0.0
+HIGD1AP15 20 10315067 10315346 + sense 0.0
+HIGD1AP15 20 10315067 10315346 + antisense 0.0
+RPL23AP6 20 10329805 10330276 - sense 0.0
+RPL23AP6 20 10329805 10330276 - antisense 0.0
+AL023913.1 20 10342736 10342878 - sense 0.0
+AL023913.1 20 10342736 10342878 - antisense 0.0
+SDAD1P2 20 10366427 10368454 + sense 0.0
+SDAD1P2 20 10366427 10368454 + antisense 0.0
+MKKS 20 10381657 10414870 - sense 0.0
+MKKS 20 10381657 10414870 - antisense 0.0
+SLX4IP 20 10415951 10617477 + sense 0.0
+SLX4IP 20 10415951 10617477 + antisense 0.0
+RP5-1099D15.1 20 10593509 10594877 - sense 0.0
+RP5-1099D15.1 20 10593509 10594877 - antisense 0.0
+JAG1 20 10618332 10654694 - sense 0.0
+JAG1 20 10618332 10654694 - antisense 0.0
+JAG1 20 10625847 10627014 - sense 0.0
+JAG1 20 10625847 10627014 - antisense 0.0
+RP11-103J8.1 20 10653576 10975572 + sense 0.0
+RP11-103J8.1 20 10653576 10975572 + antisense 0.0
+RP1-278O22.1 20 10733738 10734614 + sense 0.0
+RP1-278O22.1 20 10733738 10734614 + antisense 0.0
+RP1-278O22.2 20 10733926 10745934 - sense 0.0
+RP1-278O22.2 20 10733926 10745934 - antisense 0.0
+RP4-697P8.3 20 10855981 10889920 - sense 0.0
+RP4-697P8.3 20 10855981 10889920 - antisense 0.0
+FAT1P1 20 10869230 10869736 - sense 0.0
+FAT1P1 20 10869230 10869736 - antisense 0.0
+RP11-103J8.2 20 10981952 10982411 + sense 0.0
+RP11-103J8.2 20 10981952 10982411 + antisense 0.0
+C20orf187 20 11008408 11010014 + sense 0.0
+C20orf187 20 11008408 11010014 + antisense 0.0
+RP4-734C18.1 20 11214818 11282173 - sense 0.0
+RP4-734C18.1 20 11214818 11282173 - antisense 0.0
+RPS11P1 20 11326031 11326503 - sense 0.0
+RPS11P1 20 11326031 11326503 - antisense 0.0
+RP5-1128N12.2 20 11589084 11589696 - sense 0.0
+RP5-1128N12.2 20 11589084 11589696 - antisense 0.0
+PGAM3P 20 11601699 11602125 + sense 0.0
+PGAM3P 20 11601699 11602125 + antisense 0.0
+RP11-268G13.1 20 11665792 11667971 - sense 0.0
+RP11-268G13.1 20 11665792 11667971 - antisense 0.0
+LINC00687 20 11781111 11851363 - sense 0.0
+LINC00687 20 11781111 11851363 - antisense 0.0
+AL080274.1 20 11790813 11791095 - sense 0.0
+AL080274.1 20 11790813 11791095 - antisense 0.0
+RN7SKP111 20 11799469 11799739 - sense 0.0
+RN7SKP111 20 11799469 11799739 - antisense 0.0
+RP5-1012F16.2 20 11819003 11819222 + sense 0.0
+RP5-1012F16.2 20 11819003 11819222 + antisense 0.0
+BTBD3 20 11871371 11907257 + sense 0.0
+BTBD3 20 11871371 11907257 + antisense 0.0
+RP4-742J24.2 20 11890052 11899325 - sense 0.0
+RP4-742J24.2 20 11890052 11899325 - antisense 0.0
+RP4-796I8.1 20 12224543 12224944 - sense 0.0
+RP4-796I8.1 20 12224543 12224944 - antisense 0.0
+RP11-102J14.1 20 12286261 12297133 - sense 0.0
+RP11-102J14.1 20 12286261 12297133 - antisense 0.0
+PA2G4P2 20 12360704 12361903 + sense 0.0
+PA2G4P2 20 12360704 12361903 + antisense 0.0
+RP5-1069C8.2 20 12845850 12933167 - sense 0.0
+RP5-1069C8.2 20 12845850 12933167 - antisense 0.0
+RP5-1069C8.3 20 12915525 12916431 - sense 0.0
+RP5-1069C8.3 20 12915525 12916431 - antisense 0.0
+RP11-157E14.1 20 12930986 12932275 + sense 0.0
+RP11-157E14.1 20 12930986 12932275 + antisense 0.0
+SPTLC3 20 12989627 13147411 + sense 0.0
+SPTLC3 20 12989627 13147411 + antisense 0.0
+RP4-718P11.1 20 13054315 13054960 - sense 0.0
+RP4-718P11.1 20 13054315 13054960 - antisense 0.0
+ISM1 20 13202418 13281298 + sense 0.0
+ISM1 20 13202418 13281298 + antisense 0.0
+ISM1-AS1 20 13218448 13220321 - sense 0.0
+ISM1-AS1 20 13218448 13220321 - antisense 0.0
+RP5-1077I2.3 20 13224711 13226016 - sense 0.0
+RP5-1077I2.3 20 13224711 13226016 - antisense 0.0
+TASP1 20 13246709 13619587 - sense 0.0
+TASP1 20 13246709 13619587 - antisense 0.0
+GAPDHP2 20 13373324 13374321 + sense 0.0
+GAPDHP2 20 13373324 13374321 + antisense 0.0
+ESF1 20 13694969 13765532 - sense 0.0
+ESF1 20 13694969 13765532 - antisense 0.0
+NDUFAF5 20 13765596 13799067 + sense 0.0
+NDUFAF5 20 13765596 13799067 + antisense 0.0
+SEL1L2 20 13829893 13977089 - sense 0.0
+SEL1L2 20 13829893 13977089 - antisense 0.0
+AL117333.1 20 13936410 13936503 - sense 0.0
+AL117333.1 20 13936410 13936503 - antisense 0.0
+RNU6-278P 20 13953962 13954070 - sense 0.0
+RNU6-278P 20 13953962 13954070 - antisense 0.0
+MACROD2 20 13976015 16033842 + sense 0.0
+MACROD2 20 13976015 16033842 + antisense 0.0
+RPS3P1 20 13984154 13984345 + sense 0.0
+RPS3P1 20 13984154 13984345 + antisense 0.0
+AIMP1P1 20 14108046 14108982 + sense 0.0
+AIMP1P1 20 14108046 14108982 + antisense 0.0
+RN7SL864P 20 14203687 14203976 + sense 0.0
+RN7SL864P 20 14203687 14203976 + antisense 0.0
+FLRT3 20 14303634 14318262 - sense 0.0
+FLRT3 20 14303634 14318262 - antisense 0.0
+RNU6-228P 20 14332966 14333071 + sense 0.0
+RNU6-228P 20 14332966 14333071 + antisense 0.0
+RNF11B 20 14527830 14528269 - sense 0.0
+RNF11B 20 14527830 14528269 - antisense 0.0
+MACROD2-IT1 20 14535030 14617170 + sense 0.0
+MACROD2-IT1 20 14535030 14617170 + antisense 0.0
+RPS10P2 20 14738209 14738702 + sense 0.0
+RPS10P2 20 14738209 14738702 + antisense 0.0
+MACROD2-AS1 20 14864899 14910161 - sense 0.0
+MACROD2-AS1 20 14864899 14910161 - antisense 0.0
+RP5-974N19.1 20 14914489 14916009 - sense 0.0
+RP5-974N19.1 20 14914489 14916009 - antisense 0.0
+RNU6-1159P 20 15002199 15002305 - sense 0.0
+RNU6-1159P 20 15002199 15002305 - antisense 0.0
+RNU6-115P 20 15003498 15003604 + sense 0.0
+RNU6-115P 20 15003498 15003604 + antisense 0.0
+RNA5SP475 20 15261410 15261519 - sense 0.0
+RNA5SP475 20 15261410 15261519 - antisense 0.0
+RP11-388K2.1 20 15532802 15533530 - sense 0.0
+RP11-388K2.1 20 15532802 15533530 - antisense 0.0
+AL121584.1 20 15539025 15539113 - sense 0.0
+AL121584.1 20 15539025 15539113 - antisense 0.0
+ENSAP1 20 15600139 15600464 - sense 0.0
+ENSAP1 20 15600139 15600464 - antisense 0.0
+PPIAP17 20 16204395 16205180 - sense 0.0
+PPIAP17 20 16204395 16205180 - antisense 0.0
+KIF16B 20 16252749 16554078 - sense 0.0
+KIF16B 20 16252749 16554078 - antisense 0.0
+AL118509.1 20 16390942 16391036 - sense 0.0
+AL118509.1 20 16390942 16391036 - antisense 0.0
+RPLP0P1 20 16566978 16567338 - sense 0.0
+RPLP0P1 20 16566978 16567338 - antisense 0.0
+Y_RNA 20 16651286 16651387 - sense 0.0
+Y_RNA 20 16651286 16651387 - antisense 0.0
+RPL7AL3 20 16664753 16665049 - sense 0.0
+RPL7AL3 20 16664753 16665049 - antisense 0.0
+RP4-705D16.3 20 16695489 16711593 - sense 0.0
+RP4-705D16.3 20 16695489 16711593 - antisense 0.0
+SNRPB2 20 16710606 16722421 + sense 0.0
+SNRPB2 20 16710606 16722421 + antisense 0.0
+OTOR 20 16729003 16750707 + sense 0.0
+OTOR 20 16729003 16750707 + antisense 0.0
+RP5-1195D24.1 20 16838607 16844793 - sense 0.0
+RP5-1195D24.1 20 16838607 16844793 - antisense 0.0
+U3 20 16963477 16963678 - sense 0.0
+U3 20 16963477 16963678 - antisense 0.0
+RNU6-27P 20 17168155 17168261 + sense 0.0
+RNU6-27P 20 17168155 17168261 + antisense 0.0
+RP1-298M8.1 20 17168779 17168989 + sense 0.0
+RP1-298M8.1 20 17168779 17168989 + antisense 0.0
+RNU1-131P 20 17189705 17189865 + sense 0.0
+RNU1-131P 20 17189705 17189865 + antisense 0.0
+PCSK2 20 17206752 17465223 + sense 0.0
+PCSK2 20 17206752 17465223 + antisense 0.0
+DYNLT3P1 20 17459730 17460076 - sense 0.0
+DYNLT3P1 20 17459730 17460076 - antisense 0.0
+BFSP1 20 17474550 17549865 - sense 0.0
+BFSP1 20 17474550 17549865 - antisense 0.0
+RPS27AP2 20 17497488 17497952 + sense 0.0
+RPS27AP2 20 17497488 17497952 + antisense 0.0
+DSTN 20 17550508 17590564 + sense 0.0
+DSTN 20 17550508 17590564 + antisense 0.0
+RN7SKP69 20 17556851 17557155 - sense 0.0
+RN7SKP69 20 17556851 17557155 - antisense 0.0
+RP11-462D18.2 20 17579900 17580452 - sense 0.0
+RP11-462D18.2 20 17579900 17580452 - antisense 0.0
+RRBP1 20 17594323 17662940 - sense 0.0
+RRBP1 20 17594323 17662940 - antisense 0.0
+BANF2 20 17674317 17716516 + sense 0.0
+BANF2 20 17674317 17716516 + antisense 0.0
+AL035045.1 20 17823227 17823372 + sense 0.0
+AL035045.1 20 17823227 17823372 + antisense 0.0
+RP5-905G11.3 20 17868007 17868804 - sense 0.0
+RP5-905G11.3 20 17868007 17868804 - antisense 0.0
+RNU6-192P 20 17884406 17884505 + sense 0.0
+RNU6-192P 20 17884406 17884505 + antisense 0.0
+SNX5 20 17922241 17949623 - sense 0.0
+SNX5 20 17922241 17949623 - antisense 0.0
+OVOL2 20 17937623 18039832 - sense 0.0
+OVOL2 20 17937623 18039832 - antisense 0.0
+SNORD17 20 17943353 17943589 - sense 0.0
+SNORD17 20 17943353 17943589 - antisense 0.0
+MGME1 20 17949556 17971765 + sense 0.0
+MGME1 20 17949556 17971765 + antisense 0.0
+PTMAP3 20 17992599 17992928 + sense 0.0
+PTMAP3 20 17992599 17992928 + antisense 0.0
+RP4-726N1.2 20 18040137 18051652 + sense 0.0
+RP4-726N1.2 20 18040137 18051652 + antisense 0.0
+RPL15P1 20 18070760 18071359 - sense 0.0
+RPL15P1 20 18070760 18071359 - antisense 0.0
+RNU7-137P 20 18076215 18076276 - sense 0.0
+RNU7-137P 20 18076215 18076276 - antisense 0.0
+Y_RNA 20 18094111 18094223 - sense 0.0
+Y_RNA 20 18094111 18094223 - antisense 0.0
+PET117 20 18118517 18123813 + sense 0.0
+PET117 20 18118517 18123813 + antisense 0.0
+CSRP2BP 20 18118762 18169031 + sense 0.0
+CSRP2BP 20 18118762 18169031 + antisense 0.0
+AL050321.1 20 18150549 18150633 - sense 0.0
+AL050321.1 20 18150549 18150633 - antisense 0.0
+RP4-717M23.2 20 18200757 18201156 + sense 0.0
+RP4-717M23.2 20 18200757 18201156 + antisense 0.0
+RN7SL14P 20 18239200 18239495 - sense 0.0
+RN7SL14P 20 18239200 18239495 - antisense 0.0
+RNU2-56P 20 18246334 18246523 - sense 0.0
+RNU2-56P 20 18246334 18246523 - antisense 0.0
+ZNF133 20 18269121 18297640 + sense 0.0
+ZNF133 20 18269121 18297640 + antisense 0.0
+RN7SKP74 20 18275787 18276095 - sense 0.0
+RN7SKP74 20 18275787 18276095 - antisense 0.0
+RP4-568F9.3 20 18294409 18295755 - sense 0.0
+RP4-568F9.3 20 18294409 18295755 - antisense 0.0
+RP4-568F9.6 20 18303196 18339944 - sense 0.0
+RP4-568F9.6 20 18303196 18339944 - antisense 0.0
+RNY4P11 20 18309650 18309746 + sense 0.0
+RNY4P11 20 18309650 18309746 + antisense 0.0
+LINC00851 20 18359693 18362128 + sense 0.0
+LINC00851 20 18359693 18362128 + antisense 0.0
+DZANK1 20 18364011 18447925 - sense 0.0
+DZANK1 20 18364011 18447925 - antisense 0.0
+GCNT1P1 20 18400804 18402098 - sense 0.0
+GCNT1P1 20 18400804 18402098 - antisense 0.0
+RNA5SP476 20 18414486 18414588 + sense 0.0
+RNA5SP476 20 18414486 18414588 + antisense 0.0
+POLR3F 20 18447771 18465287 + sense 0.0
+POLR3F 20 18447771 18465287 + antisense 0.0
+MIR3192 20 18451259 18451335 + sense 0.0
+MIR3192 20 18451259 18451335 + antisense 0.0
+RPL21P3 20 18465909 18466696 + sense 0.0
+RPL21P3 20 18465909 18466696 + antisense 0.0
+RBBP9 20 18467184 18477887 - sense 0.0
+RBBP9 20 18467184 18477887 - antisense 0.0
+RPS19P1 20 18485277 18485710 + sense 0.0
+RPS19P1 20 18485277 18485710 + antisense 0.0
+SEC23B 20 18488137 18542059 + sense 0.0
+SEC23B 20 18488137 18542059 + antisense 0.0
+AL121893.1 20 18526352 18526428 - sense 0.0
+AL121893.1 20 18526352 18526428 - antisense 0.0
+LINC00493 20 18548064 18550207 + sense 0.0
+LINC00493 20 18548064 18550207 + antisense 0.0
+DTD1 20 18568537 18744561 + sense 0.0
+DTD1 20 18568537 18744561 + antisense 0.0
+RN7SL638P 20 18572974 18573261 + sense 0.0
+RN7SL638P 20 18572974 18573261 + antisense 0.0
+RNU6ATAC34P 20 18591691 18591811 - sense 0.0
+RNU6ATAC34P 20 18591691 18591811 - antisense 0.0
+DUXAP7 20 18623426 18624278 - sense 0.0
+DUXAP7 20 18623426 18624278 - antisense 0.0
+RP11-379J5.5 20 18655039 18679353 - sense 0.0
+RP11-379J5.5 20 18655039 18679353 - antisense 0.0
+EEF1A1P34 20 18763068 18764334 - sense 0.0
+EEF1A1P34 20 18763068 18764334 - antisense 0.0
+LINC00652 20 18768295 18774979 - sense 0.0
+LINC00652 20 18768295 18774979 - antisense 0.0
+RP5-1068E13.7 20 18775173 18776711 + sense 0.0
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+C20orf78 20 18790372 18810797 - sense 0.0
+C20orf78 20 18790372 18810797 - antisense 0.0
+SCP2D1 20 18794370 18795033 + sense 0.0
+SCP2D1 20 18794370 18795033 + antisense 0.0
+AL136090.1 20 19106429 19106551 + sense 0.0
+AL136090.1 20 19106429 19106551 + antisense 0.0
+SLC24A3 20 19193290 19703581 + sense 0.0
+SLC24A3 20 19193290 19703581 + antisense 0.0
+RP11-97N19.2 20 19193496 19194121 - sense 0.0
+RP11-97N19.2 20 19193496 19194121 - antisense 0.0
+RP5-1027G4.3 20 19222946 19265240 - sense 0.0
+RP5-1027G4.3 20 19222946 19265240 - antisense 0.0
+AL049647.1 20 19321940 19322016 + sense 0.0
+AL049647.1 20 19321940 19322016 + antisense 0.0
+AL139429.1 20 19570741 19570831 - sense 0.0
+AL139429.1 20 19570741 19570831 - antisense 0.0
+RP4-718D20.3 20 19673853 19678220 - sense 0.0
+RP4-718D20.3 20 19673853 19678220 - antisense 0.0
+AL121761.1 20 19715460 19715553 - sense 0.0
+AL121761.1 20 19715460 19715553 - antisense 0.0
+AL121761.2 20 19738296 19738679 - sense 0.0
+AL121761.2 20 19738296 19738679 - antisense 0.0
+RP1-122P22.2 20 19738352 19790319 + sense 0.0
+RP1-122P22.2 20 19738352 19790319 + antisense 0.0
+RPL12L3 20 19804087 19804587 - sense 0.0
+RPL12L3 20 19804087 19804587 - antisense 0.0
+RIN2 20 19867165 19983101 + sense 0.0
+RIN2 20 19867165 19983101 + antisense 0.0
+NAA20 20 19997760 20014299 + sense 0.0
+NAA20 20 19997760 20014299 + antisense 0.0
+CRNKL1 20 20015012 20036690 - sense 0.0
+CRNKL1 20 20015012 20036690 - antisense 0.0
+C20orf26 20 20033158 20341346 + sense 0.0
+C20orf26 20 20033158 20341346 + antisense 0.0
+RP5-1002M8.4 20 20075045 20076328 - sense 0.0
+RP5-1002M8.4 20 20075045 20076328 - antisense 0.0
+RP5-1178H5.2 20 20194943 20195906 - sense 0.0
+RP5-1178H5.2 20 20194943 20195906 - antisense 0.0
+RPL17P1 20 20233947 20234482 - sense 0.0
+RPL17P1 20 20233947 20234482 - antisense 0.0
+RP5-1096J16.1 20 20239051 20248453 - sense 0.0
+RP5-1096J16.1 20 20239051 20248453 - antisense 0.0
+RN7SL690P 20 20297428 20297684 - sense 0.0
+RN7SL690P 20 20297428 20297684 - antisense 0.0
+INSM1 20 20348765 20351590 + sense 0.0
+INSM1 20 20348765 20351590 + antisense 0.0
+RALGAPA2 20 20370196 20693131 - sense 0.0
+RALGAPA2 20 20370196 20693131 - antisense 0.0
+EIF4E2P1 20 20640354 20640608 + sense 0.0
+EIF4E2P1 20 20640354 20640608 + antisense 0.0
+RP11-23O13.1 20 20701830 20702522 + sense 0.0
+RP11-23O13.1 20 20701830 20702522 + antisense 0.0
+RN7SL607P 20 20719078 20719374 - sense 0.0
+RN7SL607P 20 20719078 20719374 - antisense 0.0
+MRPS11P1 20 20834764 20835285 - sense 0.0
+MRPS11P1 20 20834764 20835285 - antisense 0.0
+RP5-1177M21.1 20 20951089 20953203 + sense 0.0
+RP5-1177M21.1 20 20951089 20953203 + antisense 0.0
+LINC00237 20 21068245 21086999 - sense 0.0
+LINC00237 20 21068245 21086999 - antisense 0.0
+RPL24P2 20 21095364 21095838 + sense 0.0
+RPL24P2 20 21095364 21095838 + antisense 0.0
+PLK1S1 20 21106624 21227260 + sense 0.0
+PLK1S1 20 21106624 21227260 + antisense 0.0
+RNA5SP477 20 21119597 21119715 - sense 0.0
+RNA5SP477 20 21119597 21119715 - antisense 0.0
+RP5-872K7.7 20 21129382 21143531 - sense 0.0
+RP5-872K7.7 20 21129382 21143531 - antisense 0.0
+RP4-777D9.2 20 21134664 21198927 - sense 0.0
+RP4-777D9.2 20 21134664 21198927 - antisense 0.0
+RPS15AP1 20 21146846 21147236 - sense 0.0
+RPS15AP1 20 21146846 21147236 - antisense 0.0
+ZNF877P 20 21246492 21247103 + sense 0.0
+ZNF877P 20 21246492 21247103 + antisense 0.0
+XRN2 20 21283942 21370463 + sense 0.0
+XRN2 20 21283942 21370463 + antisense 0.0
+NKX2-4 20 21376005 21378666 - sense 0.0
+NKX2-4 20 21376005 21378666 - antisense 0.0
+RP11-227D2.3 20 21378456 21381029 + sense 0.0
+RP11-227D2.3 20 21378456 21381029 + antisense 0.0
+RN7SKP140 20 21405396 21405679 - sense 0.0
+RN7SKP140 20 21405396 21405679 - antisense 0.0
+RP5-984P4.1 20 21468882 21469263 - sense 0.0
+RP5-984P4.1 20 21468882 21469263 - antisense 0.0
+GSTM3P1 20 21482033 21482606 + sense 0.0
+GSTM3P1 20 21482033 21482606 + antisense 0.0
+NKX2-2 20 21491648 21494664 - sense 0.0
+NKX2-2 20 21491648 21494664 - antisense 0.0
+NKX2-2-AS1 20 21492085 21492947 + sense 0.0
+NKX2-2-AS1 20 21492085 21492947 + antisense 0.0
+RP5-984P4.4 20 21510840 21511382 + sense 0.0
+RP5-984P4.4 20 21510840 21511382 + antisense 0.0
+PAX1 20 21686297 21696620 + sense 0.0
+PAX1 20 21686297 21696620 + antisense 0.0
+SLC25A6P1 20 21722941 21723715 - sense 0.0
+SLC25A6P1 20 21722941 21723715 - antisense 0.0
+RPL41P1 20 21735866 21736171 + sense 0.0
+RPL41P1 20 21735866 21736171 + antisense 0.0
+RP5-1185K9.1 20 21928285 21951421 + sense 0.0
+RP5-1185K9.1 20 21928285 21951421 + antisense 0.0
+RP11-125P18.1 20 22034831 22055238 + sense 0.0
+RP11-125P18.1 20 22034831 22055238 + antisense 0.0
+RP5-1097P24.1 20 22201192 22203921 + sense 0.0
+RP5-1097P24.1 20 22201192 22203921 + antisense 0.0
+RP5-828K20.1 20 22252690 22254092 - sense 0.0
+RP5-828K20.1 20 22252690 22254092 - antisense 0.0
+RP5-828K20.2 20 22260866 22263310 - sense 0.0
+RP5-828K20.2 20 22260866 22263310 - antisense 0.0
+RP5-1004I9.2 20 22324331 22324568 - sense 0.0
+RP5-1004I9.2 20 22324331 22324568 - antisense 0.0
+RP5-1004I9.1 20 22380989 22401281 - sense 0.0
+RP5-1004I9.1 20 22380989 22401281 - antisense 0.0
+LINC00261 20 22528309 22559280 - sense 0.0
+LINC00261 20 22528309 22559280 - antisense 0.0
+FOXA2 20 22561643 22566093 - sense 0.0
+FOXA2 20 22561643 22566093 - antisense 0.0
+RP4-788L20.3 20 22568160 22588155 - sense 0.0
+RP4-788L20.3 20 22568160 22588155 - antisense 0.0
+RP11-359G22.2 20 22656710 22665982 - sense 0.0
+RP11-359G22.2 20 22656710 22665982 - antisense 0.0
+KRT18P3 20 22713440 22714727 - sense 0.0
+KRT18P3 20 22713440 22714727 - antisense 0.0
+AL158175.1 20 22713848 22713939 - sense 0.0
+AL158175.1 20 22713848 22713939 - antisense 0.0
+CYB5P4 20 22866308 22866706 - sense 0.0
+CYB5P4 20 22866308 22866706 - antisense 0.0
+RP11-189G24.2 20 22941171 22946700 - sense 0.0
+RP11-189G24.2 20 22941171 22946700 - antisense 0.0
+RP4-753D10.5 20 22990846 23011422 - sense 0.0
+RP4-753D10.5 20 22990846 23011422 - antisense 0.0
+RP4-753D10.3 20 23012179 23019873 + sense 0.0
+RP4-753D10.3 20 23012179 23019873 + antisense 0.0
+SSTR4 20 23016057 23017314 + sense 0.0
+SSTR4 20 23016057 23017314 + antisense 0.0
+THBD 20 23026270 23030378 - sense 0.0
+THBD 20 23026270 23030378 - antisense 0.0
+CD93 20 23059986 23066977 - sense 0.0
+CD93 20 23059986 23066977 - antisense 0.0
+AL118508.1 20 23061083 23061278 - sense 0.0
+AL118508.1 20 23061083 23061278 - antisense 0.0
+LINC00656 20 23105705 23113258 - sense 0.0
+LINC00656 20 23105705 23113258 - antisense 0.0
+RNA5SP478 20 23141494 23141608 - sense 0.0
+RNA5SP478 20 23141494 23141608 - antisense 0.0
+RP4-737E23.2 20 23168765 23170944 + sense 0.0
+RP4-737E23.2 20 23168765 23170944 + antisense 0.0
+RP3-322G13.7 20 23327578 23332123 - sense 0.0
+RP3-322G13.7 20 23327578 23332123 - antisense 0.0
+AL096677.1 20 23330015 23334066 - sense 0.0
+AL096677.1 20 23330015 23334066 - antisense 0.0
+NXT1 20 23331373 23335414 + sense 0.0
+NXT1 20 23331373 23335414 + antisense 0.0
+RP3-322G13.5 20 23337231 23338753 - sense 0.0
+RP3-322G13.5 20 23337231 23338753 - antisense 0.0
+GZF1 20 23342787 23353700 + sense 0.0
+GZF1 20 23342787 23353700 + antisense 0.0
+NAPB 20 23355159 23402125 - sense 0.0
+NAPB 20 23355159 23402125 - antisense 0.0
+RNA5SP479 20 23361533 23361649 - sense 0.0
+RNA5SP479 20 23361533 23361649 - antisense 0.0
+CSTL1 20 23420322 23425567 + sense 0.0
+CSTL1 20 23420322 23425567 + antisense 0.0
+CST11 20 23431040 23433494 - sense 0.0
+CST11 20 23431040 23433494 - antisense 0.0
+Y_RNA 20 23438221 23438322 - sense 0.0
+Y_RNA 20 23438221 23438322 - antisense 0.0
+CST12P 20 23456337 23460435 + sense 0.0
+CST12P 20 23456337 23460435 + antisense 0.0
+CST8 20 23471738 23476655 + sense 0.0
+CST8 20 23471738 23476655 + antisense 0.0
+RP3-333B15.4 20 23497521 23498706 - sense 0.0
+RP3-333B15.4 20 23497521 23498706 - antisense 0.0
+CST13P 20 23499783 23522655 + sense 0.0
+CST13P 20 23499783 23522655 + antisense 0.0
+CST9LP1 20 23528401 23531289 - sense 0.0
+CST9LP1 20 23528401 23531289 - antisense 0.0
+CST9L 20 23545369 23549386 - sense 0.0
+CST9L 20 23545369 23549386 - antisense 0.0
+RP11-218C14.2 20 23564282 23567147 + sense 0.0
+RP11-218C14.2 20 23564282 23567147 + antisense 0.0
+CST9 20 23583047 23586513 - sense 0.0
+CST9 20 23583047 23586513 - antisense 0.0
+CST3 20 23608534 23619110 - sense 0.0
+CST3 20 23608534 23619110 - antisense 0.0
+RP11-218C14.8 20 23612463 23612953 - sense 0.0
+RP11-218C14.8 20 23612463 23612953 - antisense 0.0
+RP11-218C14.5 20 23635862 23637027 - sense 0.0
+RP11-218C14.5 20 23635862 23637027 - antisense 0.0
+CST4 20 23666277 23669677 - sense 0.0
+CST4 20 23666277 23669677 - antisense 0.0
+CST2P1 20 23691957 23692043 - sense 0.0
+CST2P1 20 23691957 23692043 - antisense 0.0
+CST1 20 23728190 23731905 - sense 0.0
+CST1 20 23728190 23731905 - antisense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + sense 0.0
+XXyac-YX60D10.1 20 23778778 23786300 + antisense 0.0
+CST2 20 23804406 23807368 - sense 0.0
+CST2 20 23804406 23807368 - antisense 0.0
+CST5 20 23856572 23860387 - sense 0.0
+CST5 20 23856572 23860387 - antisense 0.0
+CSTP1 20 23899408 23902806 - sense 0.0
+CSTP1 20 23899408 23902806 - antisense 0.0
+RP5-831C21.1 20 23961222 23961371 - sense 0.0
+RP5-831C21.1 20 23961222 23961371 - antisense 0.0
+GGTLC1 20 23965690 23969416 - sense 0.0
+GGTLC1 20 23965690 23969416 - antisense 0.0
+POM121L3P 20 23969929 23971091 + sense 0.0
+POM121L3P 20 23969929 23971091 + antisense 0.0
+RP5-1100I6.1 20 24123226 24125022 - sense 0.0
+RP5-1100I6.1 20 24123226 24125022 - antisense 0.0
+RP5-1100I6.2 20 24180403 24205224 + sense 0.0
+RP5-1100I6.2 20 24180403 24205224 + antisense 0.0
+RNU1-23P 20 24217891 24218034 + sense 0.0
+RNU1-23P 20 24217891 24218034 + antisense 0.0
+RP4-564O4.1 20 24278221 24298722 - sense 0.0
+RP4-564O4.1 20 24278221 24298722 - antisense 0.0
+GAPDHP53 20 24426027 24426950 + sense 0.0
+GAPDHP53 20 24426027 24426950 + antisense 0.0
+SYNDIG1 20 24449835 24647252 + sense 0.0
+SYNDIG1 20 24449835 24647252 + antisense 0.0
+RP11-526K17.2 20 24472108 24482981 - sense 0.0
+RP11-526K17.2 20 24472108 24482981 - antisense 0.0
+RP5-860P4.2 20 24660183 24661627 + sense 0.0
+RP5-860P4.2 20 24660183 24661627 + antisense 0.0
+CST7 20 24929866 24940564 + sense 0.0
+CST7 20 24929866 24940564 + antisense 0.0
+APMAP 20 24943561 24973615 - sense 0.0
+APMAP 20 24943561 24973615 - antisense 0.0
+RNU6-1257P 20 24954807 24954916 + sense 0.0
+RNU6-1257P 20 24954807 24954916 + antisense 0.0
+ACSS1 20 24986868 25039616 - sense 0.0
+ACSS1 20 24986868 25039616 - antisense 0.0
+VSX1 20 25051521 25062996 - sense 0.0
+VSX1 20 25051521 25062996 - antisense 0.0
+RP5-1025A1.2 20 25079741 25080564 + sense 0.0
+RP5-1025A1.2 20 25079741 25080564 + antisense 0.0
+RP4-738P15.1 20 25121425 25129894 - sense 0.0
+RP4-738P15.1 20 25121425 25129894 - antisense 0.0
+RP4-738P15.4 20 25141803 25142697 - sense 0.0
+RP4-738P15.4 20 25141803 25142697 - antisense 0.0
+ENTPD6 20 25176329 25207365 + sense 0.0
+ENTPD6 20 25176329 25207365 + antisense 0.0
+Y_RNA 20 25195334 25195434 + sense 0.0
+Y_RNA 20 25195334 25195434 + antisense 0.0
+AL035252.1 20 25207122 25207370 - sense 0.0
+AL035252.1 20 25207122 25207370 - antisense 0.0
+PYGB 20 25228705 25278650 + sense 0.0
+PYGB 20 25228705 25278650 + antisense 0.0
+ABHD12 20 25275379 25371619 - sense 0.0
+ABHD12 20 25275379 25371619 - antisense 0.0
+PPIAP2 20 25348911 25349402 - sense 0.0
+PPIAP2 20 25348911 25349402 - antisense 0.0
+GINS1 20 25388363 25433264 + sense 0.0
+GINS1 20 25388363 25433264 + antisense 0.0
+NINL 20 25433341 25566153 - sense 0.0
+NINL 20 25433341 25566153 - antisense 0.0
+RNU6ATAC17P 20 25591789 25591859 + sense 0.0
+RNU6ATAC17P 20 25591789 25591859 + antisense 0.0
+NANP 20 25593571 25604811 - sense 0.0
+NANP 20 25593571 25604811 - antisense 0.0
+ZNF337-AS1 20 25604681 25658710 + sense 0.0
+ZNF337-AS1 20 25604681 25658710 + antisense 0.0
+RN7SL594P 20 25635232 25635517 - sense 0.0
+RN7SL594P 20 25635232 25635517 - antisense 0.0
+MED28P7 20 25650493 25651022 - sense 0.0
+MED28P7 20 25650493 25651022 - antisense 0.0
+ZNF337 20 25654851 25677477 - sense 0.0
+ZNF337 20 25654851 25677477 - antisense 0.0
+VN1R108P 20 25714900 25715729 + sense 0.0
+VN1R108P 20 25714900 25715729 + antisense 0.0
+RP13-401N8.1 20 25731854 25733397 + sense 0.0
+RP13-401N8.1 20 25731854 25733397 + antisense 0.0
+FAM182B 20 25744102 25848861 - sense 0.0
+FAM182B 20 25744102 25848861 - antisense 0.0
+RP13-401N8.3 20 25816621 25817468 - sense 0.0
+RP13-401N8.3 20 25816621 25817468 - antisense 0.0
+CFTRP1 20 25900135 25900317 - sense 0.0
+CFTRP1 20 25900135 25900317 - antisense 0.0
+RP4-760C5.5 20 25936448 25949924 + sense 0.0
+RP4-760C5.5 20 25936448 25949924 + antisense 0.0
+RP4-760C5.3 20 25989427 25991167 - sense 0.0
+RP4-760C5.3 20 25989427 25991167 - antisense 0.0
+CTD-2514C3.1 20 25999468 26001320 + sense 0.0
+CTD-2514C3.1 20 25999468 26001320 + antisense 0.0
+FAM182A 20 26035291 26073683 + sense 0.0
+FAM182A 20 26035291 26073683 + antisense 0.0
+NCOR1P1 20 26084052 26094664 - sense 0.0
+NCOR1P1 20 26084052 26094664 - antisense 0.0
+RP13-329D4.3 20 26113523 26114834 - sense 0.0
+RP13-329D4.3 20 26113523 26114834 - antisense 0.0
+MIR663A 20 26167556 26232162 - sense 0.0
+MIR663A 20 26167556 26232162 - antisense 0.0
+RP3-410C9.2 20 26171625 26174582 + sense 0.0
+RP3-410C9.2 20 26171625 26174582 + antisense 0.0
+RP4-610C12.2 20 29449474 29449652 - sense 0.0
+RP4-610C12.2 20 29449474 29449652 - antisense 0.0
+RP4-610C12.4 20 29513582 29521213 - sense 0.0
+RP4-610C12.4 20 29513582 29521213 - antisense 0.0
+RP4-610C12.3 20 29521637 29522987 - sense 0.0
+RP4-610C12.3 20 29521637 29522987 - antisense 0.0
+Y_RNA 20 29543691 29543802 - sense 0.0
+Y_RNA 20 29543691 29543802 - antisense 0.0
+RP4-610C12.1 20 29558488 29596406 - sense 0.0
+RP4-610C12.1 20 29558488 29596406 - antisense 0.0
+FRG1B 20 29611857 29634010 + sense 0.0
+FRG1B 20 29611857 29634010 + antisense 0.0
+AL441988.1 20 29637162 29637300 + sense 0.0
+AL441988.1 20 29637162 29637300 + antisense 0.0
+MLLT10P1 20 29637799 29638060 - sense 0.0
+MLLT10P1 20 29637799 29638060 - antisense 0.0
+DEFB115 20 29845467 29847435 + sense 0.0
+DEFB115 20 29845467 29847435 + antisense 0.0
+DKKL1P1 20 29861973 29862670 + sense 0.0
+DKKL1P1 20 29861973 29862670 + antisense 0.0
+RP5-854E16.2 20 29873120 29874638 - sense 0.0
+RP5-854E16.2 20 29873120 29874638 - antisense 0.0
+DEFB116 20 29891015 29896388 - sense 0.0
+DEFB116 20 29891015 29896388 - antisense 0.0
+RPL31P3 20 29899106 29899765 - sense 0.0
+RPL31P3 20 29899106 29899765 - antisense 0.0
+HAUS6P2 20 29929174 29932274 - sense 0.0
+HAUS6P2 20 29929174 29932274 - antisense 0.0
+RNA5SP480 20 29944673 29944781 + sense 0.0
+RNA5SP480 20 29944673 29944781 + antisense 0.0
+DEFB117 20 29948578 29948733 + sense 0.0
+DEFB117 20 29948578 29948733 + antisense 0.0
+DEFB118 20 29956421 29961726 + sense 0.0
+DEFB118 20 29956421 29961726 + antisense 0.0
+SNORA40 20 29964122 29964249 + sense 0.0
+SNORA40 20 29964122 29964249 + antisense 0.0
+DEFB119 20 29964967 29978406 - sense 0.0
+DEFB119 20 29964967 29978406 - antisense 0.0
+DEFB121 20 29992648 30000641 - sense 0.0
+DEFB121 20 29992648 30000641 - antisense 0.0
+DEFB122 20 30009239 30016983 - sense 0.0
+DEFB122 20 30009239 30016983 - antisense 0.0
+DEFB123 20 30028322 30038060 + sense 0.0
+DEFB123 20 30028322 30038060 + antisense 0.0
+DEFB124 20 30053309 30064560 - sense 0.0
+DEFB124 20 30053309 30064560 - antisense 0.0
+REM1 20 30063096 30072708 + sense 0.0
+REM1 20 30063096 30072708 + antisense 0.0
+LINC00028 20 30073581 30075377 + sense 0.0
+LINC00028 20 30073581 30075377 + antisense 0.0
+HM13 20 30102231 30157370 + sense 0.0
+HM13 20 30102231 30157370 + antisense 0.0
+RP3-324O17.4 20 30135307 30135852 + sense 0.0
+RP3-324O17.4 20 30135307 30135852 + antisense 0.0
+HM13-IT1 20 30150969 30151879 + sense 0.0
+HM13-IT1 20 30150969 30151879 + antisense 0.0
+HM13-AS1 20 30155510 30161066 - sense 0.0
+HM13-AS1 20 30155510 30161066 - antisense 0.0
+RNU6-384P 20 30168892 30168995 + sense 0.0
+RNU6-384P 20 30168892 30168995 + antisense 0.0
+ID1 20 30193086 30194318 + sense 0.0
+ID1 20 30193086 30194318 + antisense 0.0
+MIR3193 20 30194989 30195043 + sense 0.0
+MIR3193 20 30194989 30195043 + antisense 0.0
+COX4I2 20 30225691 30232809 + sense 0.0
+COX4I2 20 30225691 30232809 + antisense 0.0
+BCL2L1 20 30252255 30311792 - sense 0.0
+BCL2L1 20 30252255 30311792 - antisense 0.0
+RP11-243J16.7 20 30274019 30304628 + sense 0.0
+RP11-243J16.7 20 30274019 30304628 + antisense 0.0
+AL160175.1 20 30309001 30309134 + sense 0.0
+AL160175.1 20 30309001 30309134 + antisense 0.0
+TPX2 20 30327074 30389608 + sense 0.0
+TPX2 20 30327074 30389608 + antisense 0.0
+RP11-243J16.8 20 30396306 30396552 - sense 0.0
+RP11-243J16.8 20 30396306 30396552 - antisense 0.0
+MYLK2 20 30407111 30422492 + sense 0.0
+MYLK2 20 30407111 30422492 + antisense 0.0
+FOXS1 20 30432103 30433420 - sense 0.0
+FOXS1 20 30432103 30433420 - antisense 0.0
+DUSP15 20 30435440 30458550 - sense 0.0
+DUSP15 20 30435440 30458550 - antisense 0.0
+TTLL9 20 30458505 30532764 + sense 0.0
+TTLL9 20 30458505 30532764 + antisense 0.0
+RNU1-94P 20 30489057 30489229 + sense 0.0
+RNU1-94P 20 30489057 30489229 + antisense 0.0
+PDRG1 20 30532758 30539895 - sense 0.0
+PDRG1 20 30532758 30539895 - antisense 0.0
+XKR7 20 30555805 30591190 + sense 0.0
+XKR7 20 30555805 30591190 + antisense 0.0
+RNA5SP481 20 30596154 30596275 + sense 0.0
+RNA5SP481 20 30596154 30596275 + antisense 0.0
+CCM2L 20 30598245 30619984 + sense 0.0
+CCM2L 20 30598245 30619984 + antisense 0.0
+RP1-310O13.7 20 30615556 30619378 - sense 0.0
+RP1-310O13.7 20 30615556 30619378 - antisense 0.0
+RNA5SP482 20 30638391 30638508 + sense 0.0
+RNA5SP482 20 30638391 30638508 + antisense 0.0
+HCK 20 30639991 30689659 + sense 0.0
+HCK 20 30639991 30689659 + antisense 0.0
+TM9SF4 20 30697309 30755061 + sense 0.0
+TM9SF4 20 30697309 30755061 + antisense 0.0
+AL049539.1 20 30706457 30706554 - sense 0.0
+AL049539.1 20 30706457 30706554 - antisense 0.0
+RSL24D1P6 20 30758193 30758593 - sense 0.0
+RSL24D1P6 20 30758193 30758593 - antisense 0.0
+TSPY26P 20 30774280 30778330 - sense 0.0
+TSPY26P 20 30774280 30778330 - antisense 0.0
+PLAGL2 20 30780306 30795594 - sense 0.0
+PLAGL2 20 30780306 30795594 - antisense 0.0
+POFUT1 20 30795683 30826470 + sense 0.0
+POFUT1 20 30795683 30826470 + antisense 0.0
+MIR1825 20 30825598 30825650 + sense 0.0
+MIR1825 20 30825598 30825650 + antisense 0.0
+KIF3B 20 30865467 30922814 + sense 0.0
+KIF3B 20 30865467 30922814 + antisense 0.0
+AL121897.1 20 30865503 30865591 - sense 0.0
+AL121897.1 20 30865503 30865591 - antisense 0.0
+ASXL1 20 30946155 31027122 + sense 0.0
+ASXL1 20 30946155 31027122 + antisense 0.0
+C20orf112 20 31030862 31172876 - sense 0.0
+C20orf112 20 31030862 31172876 - antisense 0.0
+RP5-1184F4.5 20 31037558 31041410 + sense 0.0
+RP5-1184F4.5 20 31037558 31041410 + antisense 0.0
+RP11-410N8.3 20 31148895 31161690 + sense 0.0
+RP11-410N8.3 20 31148895 31161690 + antisense 0.0
+RP11-410N8.1 20 31169765 31181702 + sense 0.0
+RP11-410N8.1 20 31169765 31181702 + antisense 0.0
+RP11-410N8.4 20 31175281 31196695 + sense 0.0
+RP11-410N8.4 20 31175281 31196695 + antisense 0.0
+C20orf203 20 31219428 31261743 - sense 0.0
+C20orf203 20 31219428 31261743 - antisense 0.0
+BAK1P1 20 31276723 31278816 - sense 0.0
+BAK1P1 20 31276723 31278816 - antisense 0.0
+COMMD7 20 31290493 31331803 - sense 0.0
+COMMD7 20 31290493 31331803 - antisense 0.0
+DNMT3B 20 31350191 31397162 + sense 0.0
+DNMT3B 20 31350191 31397162 + antisense 0.0
+MAPRE1 20 31407699 31438211 + sense 0.0
+MAPRE1 20 31407699 31438211 + antisense 0.0
+RP5-1085F17.4 20 31430934 31442063 - sense 0.0
+RP5-1085F17.4 20 31430934 31442063 - antisense 0.0
+RP5-1085F17.3 20 31444848 31446557 + sense 0.0
+RP5-1085F17.3 20 31444848 31446557 + antisense 0.0
+EFCAB8 20 31446729 31549006 + sense 0.0
+EFCAB8 20 31446729 31549006 + antisense 0.0
+SUN5 20 31571579 31592239 - sense 0.0
+SUN5 20 31571579 31592239 - antisense 0.0
+BPIFB2 20 31595406 31611515 + sense 0.0
+BPIFB2 20 31595406 31611515 + antisense 0.0
+BPIFB6 20 31619454 31631853 + sense 0.0
+BPIFB6 20 31619454 31631853 + antisense 0.0
+HDHD1P3 20 31635323 31635958 - sense 0.0
+HDHD1P3 20 31635323 31635958 - antisense 0.0
+BPIFB3 20 31643230 31661434 + sense 0.0
+BPIFB3 20 31643230 31661434 + antisense 0.0
+AL121756.1 20 31645394 31645476 - sense 0.0
+AL121756.1 20 31645394 31645476 - antisense 0.0
+BPIFB4 20 31667450 31699557 + sense 0.0
+BPIFB4 20 31667450 31699557 + antisense 0.0
+BPIFA2 20 31749574 31769218 + sense 0.0
+BPIFA2 20 31749574 31769218 + antisense 0.0
+SOCS2P1 20 31775197 31776098 + sense 0.0
+SOCS2P1 20 31775197 31776098 + antisense 0.0
+BPIFA4P 20 31781391 31798268 + sense 0.0
+BPIFA4P 20 31781391 31798268 + antisense 0.0
+RP11-49G10.3 20 31802726 31804873 - sense 0.0
+RP11-49G10.3 20 31802726 31804873 - antisense 0.0
+BPIFA3 20 31805116 31815564 + sense 0.0
+BPIFA3 20 31805116 31815564 + antisense 0.0
+AL121901.1 20 31823091 31823387 + sense 0.0
+AL121901.1 20 31823091 31823387 + antisense 0.0
+BPIFA1 20 31823801 31831115 + sense 0.0
+BPIFA1 20 31823801 31831115 + antisense 0.0
+RPL12P3 20 31860068 31860463 - sense 0.0
+RPL12P3 20 31860068 31860463 - antisense 0.0
+BPIFB1 20 31861286 31897684 + sense 0.0
+BPIFB1 20 31861286 31897684 + antisense 0.0
+BPIFB5P 20 31904675 31917775 + sense 0.0
+BPIFB5P 20 31904675 31917775 + antisense 0.0
+BPIFB9P 20 31935526 31942250 + sense 0.0
+BPIFB9P 20 31935526 31942250 + antisense 0.0
+CDK5RAP1 20 31946645 31989367 - sense 0.0
+CDK5RAP1 20 31946645 31989367 - antisense 0.0
+SNTA1 20 31995761 32031698 - sense 0.0
+SNTA1 20 31995761 32031698 - antisense 0.0
+RN7SL511P 20 32046605 32046854 - sense 0.0
+RN7SL511P 20 32046605 32046854 - antisense 0.0
+CBFA2T2 20 32077881 32237842 + sense 0.0
+CBFA2T2 20 32077881 32237842 + antisense 0.0
+RP1-63M2.6 20 32244893 32245415 + sense 0.0
+RP1-63M2.6 20 32244893 32245415 + antisense 0.0
+NECAB3 20 32244893 32262269 - sense 0.0
+NECAB3 20 32244893 32262269 - antisense 0.0
+C20orf144 20 32250090 32253425 + sense 0.0
+C20orf144 20 32250090 32253425 + antisense 0.0
+ACTL10 20 32254304 32256331 + sense 0.0
+ACTL10 20 32254304 32256331 + antisense 0.0
+RP1-63M2.5 20 32262323 32263186 + sense 0.0
+RP1-63M2.5 20 32262323 32263186 + antisense 0.0
+E2F1 20 32263489 32274210 - sense 0.0
+E2F1 20 32263489 32274210 - antisense 0.0
+PXMP4 20 32294512 32308125 - sense 0.0
+PXMP4 20 32294512 32308125 - antisense 0.0
+RP4-553F4.2 20 32316737 32319634 - sense 0.0
+RP4-553F4.2 20 32316737 32319634 - antisense 0.0
+ZNF341 20 32319463 32380075 + sense 0.0
+ZNF341 20 32319463 32380075 + antisense 0.0
+RPL31P2 20 32339973 32340349 - sense 0.0
+RPL31P2 20 32339973 32340349 - antisense 0.0
+RP4-553F4.6 20 32375179 32398903 - sense 0.0
+RP4-553F4.6 20 32375179 32398903 - antisense 0.0
+CHMP4B 20 32399110 32442172 + sense 0.0
+CHMP4B 20 32399110 32442172 + antisense 0.0
+TPM3P2 20 32500129 32501142 - sense 0.0
+TPM3P2 20 32500129 32501142 - antisense 0.0
+PIGPP3 20 32552968 32553382 + sense 0.0
+PIGPP3 20 32552968 32553382 + antisense 0.0
+RP5-1125A11.1 20 32570858 32582163 - sense 0.0
+RP5-1125A11.1 20 32570858 32582163 - antisense 0.0
+RALY 20 32581452 32696114 + sense 0.0
+RALY 20 32581452 32696114 + antisense 0.0
+RP5-1125A11.4 20 32602775 32605555 - sense 0.0
+RP5-1125A11.4 20 32602775 32605555 - antisense 0.0
+MIR4755 20 32636925 32636996 + sense 0.0
+MIR4755 20 32636925 32636996 + antisense 0.0
+RP1-64K7.4 20 32668955 32669754 + sense 0.0
+RP1-64K7.4 20 32668955 32669754 + antisense 0.0
+EIF2S2 20 32676104 32700138 - sense 0.0
+EIF2S2 20 32676104 32700138 - antisense 0.0
+RPS2P1 20 32710276 32711096 + sense 0.0
+RPS2P1 20 32710276 32711096 + antisense 0.0
+ASIP 20 32782375 32857150 + sense 0.0
+ASIP 20 32782375 32857150 + antisense 0.0
+XPOTP1 20 32801301 32803698 - sense 0.0
+XPOTP1 20 32801301 32803698 - antisense 0.0
+RP4-785G19.5 20 32822646 32868979 - sense 0.0
+RP4-785G19.5 20 32822646 32868979 - antisense 0.0
+RP4-785G19.2 20 32833759 32834343 - sense 0.0
+RP4-785G19.2 20 32833759 32834343 - antisense 0.0
+AHCY 20 32868074 32899608 - sense 0.0
+AHCY 20 32868074 32899608 - antisense 0.0
+CTD-3216D2.5 20 32869438 32874272 - sense 0.0
+CTD-3216D2.5 20 32869438 32874272 - antisense 0.0
+CTD-3216D2.4 20 32935477 32935591 - sense 0.0
+CTD-3216D2.4 20 32935477 32935591 - antisense 0.0
+ITCH 20 32951041 33099198 + sense 0.0
+ITCH 20 32951041 33099198 + antisense 0.0
+Y_RNA 20 32971971 32972071 - sense 0.0
+Y_RNA 20 32971971 32972071 - antisense 0.0
+CDC42P1 20 32989955 32990502 - sense 0.0
+CDC42P1 20 32989955 32990502 - antisense 0.0
+ITCH-AS1 20 33029397 33029830 - sense 0.0
+ITCH-AS1 20 33029397 33029830 - antisense 0.0
+ITCH-IT1 20 33038735 33042357 + sense 0.0
+ITCH-IT1 20 33038735 33042357 + antisense 0.0
+MIR644A 20 33054130 33054223 + sense 0.0
+MIR644A 20 33054130 33054223 + antisense 0.0
+FDX1P1 20 33063729 33064279 - sense 0.0
+FDX1P1 20 33063729 33064279 - antisense 0.0
+DYNLRB1 20 33104214 33128762 + sense 0.0
+DYNLRB1 20 33104214 33128762 + antisense 0.0
+Y_RNA 20 33114315 33114411 - sense 0.0
+Y_RNA 20 33114315 33114411 - antisense 0.0
+MAP1LC3A 20 33134658 33148149 + sense 0.0
+MAP1LC3A 20 33134658 33148149 + antisense 0.0
+PIGU 20 33148346 33264910 - sense 0.0
+PIGU 20 33148346 33264910 - antisense 0.0
+RP11-346K17.3 20 33276492 33276782 + sense 0.0
+RP11-346K17.3 20 33276492 33276782 + antisense 0.0
+NCOA6 20 33284722 33413452 - sense 0.0
+NCOA6 20 33284722 33413452 - antisense 0.0
+TP53INP2 20 33292094 33301243 + sense 0.0
+TP53INP2 20 33292094 33301243 + antisense 0.0
+HMGB3P1 20 33421378 33422265 - sense 0.0
+HMGB3P1 20 33421378 33422265 - antisense 0.0
+GGT7 20 33432523 33460663 - sense 0.0
+GGT7 20 33432523 33460663 - antisense 0.0
+ACSS2 20 33459949 33515769 + sense 0.0
+ACSS2 20 33459949 33515769 + antisense 0.0
+GSS 20 33516236 33543620 - sense 0.0
+GSS 20 33516236 33543620 - antisense 0.0
+MYH7B 20 33563206 33590240 + sense 0.0
+MYH7B 20 33563206 33590240 + antisense 0.0
+MIR499A 20 33578179 33578300 + sense 0.0
+MIR499A 20 33578179 33578300 + antisense 0.0
+TRPC4AP 20 33590207 33680674 - sense 0.0
+TRPC4AP 20 33590207 33680674 - antisense 0.0
+RNU6-407P 20 33618120 33618223 - sense 0.0
+RNU6-407P 20 33618120 33618223 - antisense 0.0
+EDEM2 20 33703167 33865928 - sense 0.0
+EDEM2 20 33703167 33865928 - antisense 0.0
+SNORD56 20 33704939 33705010 - sense 0.0
+SNORD56 20 33704939 33705010 - antisense 0.0
+PROCR 20 33759876 33765165 + sense 0.0
+PROCR 20 33759876 33765165 + antisense 0.0
+RNA5SP483 20 33783109 33783226 + sense 0.0
+RNA5SP483 20 33783109 33783226 + antisense 0.0
+RP4-614O4.12 20 33789550 33791091 - sense 0.0
+RP4-614O4.12 20 33789550 33791091 - antisense 0.0
+AL121753.1 20 33802392 33802492 + sense 0.0
+AL121753.1 20 33802392 33802492 + antisense 0.0
+MMP24-AS1 20 33804265 33865934 - sense 0.0
+MMP24-AS1 20 33804265 33865934 - antisense 0.0
+MT1P3 20 33805812 33805988 + sense 0.0
+MT1P3 20 33805812 33805988 + antisense 0.0
+MMP24 20 33814457 33864801 + sense 0.0
+MMP24 20 33814457 33864801 + antisense 0.0
+RP4-614O4.11 20 33855688 33867846 - sense 0.0
+RP4-614O4.11 20 33855688 33867846 - antisense 0.0
+EIF6 20 33866714 33872788 - sense 0.0
+EIF6 20 33866714 33872788 - antisense 0.0
+FAM83C-AS1 20 33873054 33873559 + sense 0.0
+FAM83C-AS1 20 33873054 33873559 + antisense 0.0
+FAM83C 20 33873534 33880204 - sense 0.0
+FAM83C 20 33873534 33880204 - antisense 0.0
+UQCC1 20 33890369 33999944 - sense 0.0
+UQCC1 20 33890369 33999944 - antisense 0.0
+GDF5OS 20 34020827 34023248 + sense 0.0
+GDF5OS 20 34020827 34023248 + antisense 0.0
+GDF5 20 34021145 34042568 - sense 0.0
+GDF5 20 34021145 34042568 - antisense 0.0
+MIR1289-1 20 34041776 34041919 - sense 0.0
+MIR1289-1 20 34041776 34041919 - antisense 0.0
+CEP250 20 34042985 34099804 + sense 0.0
+CEP250 20 34042985 34099804 + antisense 0.0
+RP3-477O4.14 20 34064028 34078808 - sense 0.0
+RP3-477O4.14 20 34064028 34078808 - antisense 0.0
+RP3-477O4.16 20 34106682 34107108 + sense 0.0
+RP3-477O4.16 20 34106682 34107108 + antisense 0.0
+RP3-477O4.5 20 34108569 34117481 - sense 0.0
+RP3-477O4.5 20 34108569 34117481 - antisense 0.0
+C20orf173 20 34111014 34117481 - sense 0.0
+C20orf173 20 34111014 34117481 - antisense 0.0
+ERGIC3 20 34129770 34145405 + sense 0.0
+ERGIC3 20 34129770 34145405 + antisense 0.0
+RPL36P4 20 34132175 34132492 - sense 0.0
+RPL36P4 20 34132175 34132492 - antisense 0.0
+FER1L4 20 34146507 34195484 - sense 0.0
+FER1L4 20 34146507 34195484 - antisense 0.0
+RPL37P1 20 34176246 34176529 + sense 0.0
+RPL37P1 20 34176246 34176529 + antisense 0.0
+SPAG4 20 34203814 34208971 + sense 0.0
+SPAG4 20 34203814 34208971 + antisense 0.0
+CPNE1 20 34213953 34252878 - sense 0.0
+CPNE1 20 34213953 34252878 - antisense 0.0
+RP1-309K20.6 20 34220262 34262466 - sense 0.0
+RP1-309K20.6 20 34220262 34262466 - antisense 0.0
+RN7SKP271 20 34231065 34231384 + sense 0.0
+RN7SKP271 20 34231065 34231384 + antisense 0.0
+RNU6-759P 20 34235250 34235352 - sense 0.0
+RNU6-759P 20 34235250 34235352 - antisense 0.0
+RBM12 20 34236847 34252878 - sense 0.0
+RBM12 20 34236847 34252878 - antisense 0.0
+NFS1 20 34255977 34287281 - sense 0.0
+NFS1 20 34255977 34287281 - antisense 0.0
+ROMO1 20 34287194 34288906 + sense 0.0
+ROMO1 20 34287194 34288906 + antisense 0.0
+RBM39 20 34291531 34330234 - sense 0.0
+RBM39 20 34291531 34330234 - antisense 0.0
+snoU13 20 34304393 34304492 + sense 0.0
+snoU13 20 34304393 34304492 + antisense 0.0
+RPF2P1 20 34340736 34341641 + sense 0.0
+RPF2P1 20 34340736 34341641 + antisense 0.0
+RNU6-1166P 20 34357707 34357789 - sense 0.0
+RNU6-1166P 20 34357707 34357789 - antisense 0.0
+PHF20 20 34359896 34538303 + sense 0.0
+PHF20 20 34359896 34538303 + antisense 0.0
+COX7BP2 20 34438596 34438837 - sense 0.0
+COX7BP2 20 34438596 34438837 - antisense 0.0
+Y_RNA 20 34441174 34441286 - sense 0.0
+Y_RNA 20 34441174 34441286 - antisense 0.0
+HIGD1AP16 20 34466398 34466655 + sense 0.0
+HIGD1AP16 20 34466398 34466655 + antisense 0.0
+RNU4-40P 20 34475581 34475723 + sense 0.0
+RNU4-40P 20 34475581 34475723 + antisense 0.0
+RNU6-937P 20 34516492 34516597 - sense 0.0
+RNU6-937P 20 34516492 34516597 - antisense 0.0
+SCAND1 20 34541539 34547394 - sense 0.0
+SCAND1 20 34541539 34547394 - antisense 0.0
+CNBD2 20 34556512 34618622 + sense 0.0
+CNBD2 20 34556512 34618622 + antisense 0.0
+LINC00657 20 34633544 34638882 - sense 0.0
+LINC00657 20 34633544 34638882 - antisense 0.0
+RP4-550H1.4 20 34660363 34673182 + sense 0.0
+RP4-550H1.4 20 34660363 34673182 + antisense 0.0
+HMGB3P2 20 34663940 34664523 - sense 0.0
+HMGB3P2 20 34663940 34664523 - antisense 0.0
+RP4-550H1.5 20 34674174 34676114 - sense 0.0
+RP4-550H1.5 20 34674174 34676114 - antisense 0.0
+EPB41L1 20 34679426 34820721 + sense 0.0
+EPB41L1 20 34679426 34820721 + antisense 0.0
+snoU13 20 34708884 34708994 + sense 0.0
+snoU13 20 34708884 34708994 + antisense 0.0
+RP11-234K24.3 20 34736648 34743682 - sense 0.0
+RP11-234K24.3 20 34736648 34743682 - antisense 0.0
+AL121895.1 20 34756461 34758180 - sense 0.0
+AL121895.1 20 34756461 34758180 - antisense 0.0
+AAR2 20 34824381 34858840 + sense 0.0
+AAR2 20 34824381 34858840 + antisense 0.0
+DLGAP4 20 34894258 35157040 + sense 0.0
+DLGAP4 20 34894258 35157040 + antisense 0.0
+RP5-977B1.7 20 35136563 35201794 - sense 0.0
+RP5-977B1.7 20 35136563 35201794 - antisense 0.0
+MYL9 20 35169887 35178228 + sense 0.0
+MYL9 20 35169887 35178228 + antisense 0.0
+RP5-977B1.11 20 35177530 35232932 - sense 0.0
+RP5-977B1.11 20 35177530 35232932 - antisense 0.0
+TGIF2 20 35201891 35222353 + sense 0.0
+TGIF2 20 35201891 35222353 + antisense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + sense 0.0
+TGIF2-C20orf24 20 35202956 35240787 + antisense 0.0
+C20orf24 20 35234137 35240960 + sense 0.0
+C20orf24 20 35234137 35240960 + antisense 0.0
+SLA2 20 35240721 35274619 - sense 0.0
+SLA2 20 35240721 35274619 - antisense 0.0
+HNRNPA3P2 20 35248806 35249826 + sense 0.0
+HNRNPA3P2 20 35248806 35249826 + antisense 0.0
+NDRG3 20 35280169 35374481 - sense 0.0
+NDRG3 20 35280169 35374481 - antisense 0.0
+Y_RNA 20 35296962 35297073 - sense 0.0
+Y_RNA 20 35296962 35297073 - antisense 0.0
+AL132768.1 20 35374459 35374533 + sense 0.0
+AL132768.1 20 35374459 35374533 + antisense 0.0
+DSN1 20 35380194 35402221 - sense 0.0
+DSN1 20 35380194 35402221 - antisense 0.0
+SOGA1 20 35405845 35492089 - sense 0.0
+SOGA1 20 35405845 35492089 - antisense 0.0
+RN7SL156P 20 35498502 35498793 + sense 0.0
+RN7SL156P 20 35498502 35498793 + antisense 0.0
+TLDC2 20 35504524 35522638 + sense 0.0
+TLDC2 20 35504524 35522638 + antisense 0.0
+SAMHD1 20 35518632 35580246 - sense 0.0
+SAMHD1 20 35518632 35580246 - antisense 0.0
+RBL1 20 35624752 35724398 - sense 0.0
+RBL1 20 35624752 35724398 - antisense 0.0
+RPS3AP3 20 35650146 35650387 - sense 0.0
+RPS3AP3 20 35650146 35650387 - antisense 0.0
+RPS27AP3 20 35677657 35678110 + sense 0.0
+RPS27AP3 20 35677657 35678110 + antisense 0.0
+RBL1 20 35724188 35725581 + sense 0.0
+RBL1 20 35724188 35725581 + antisense 0.0
+MROH8 20 35729629 35807991 - sense 0.0
+MROH8 20 35729629 35807991 - antisense 0.0
+RP3-343K2.4 20 35794177 35794715 - sense 0.0
+RP3-343K2.4 20 35794177 35794715 - antisense 0.0
+RPN2 20 35806813 35870022 + sense 0.0
+RPN2 20 35806813 35870022 + antisense 0.0
+GHRH 20 35879489 35890238 - sense 0.0
+GHRH 20 35879489 35890238 - antisense 0.0
+MANBAL 20 35918041 35945663 + sense 0.0
+MANBAL 20 35918041 35945663 + antisense 0.0
+SRC 20 35973088 36034453 + sense 0.0
+SRC 20 35973088 36034453 + antisense 0.0
+RPL7AP14 20 36073135 36073936 - sense 0.0
+RPL7AP14 20 36073135 36073936 - antisense 0.0
+BLCAP 20 36120874 36156333 - sense 0.0
+BLCAP 20 36120874 36156333 - antisense 0.0
+NNAT 20 36149617 36152092 + sense 0.0
+NNAT 20 36149617 36152092 + antisense 0.0
+PPIAP3 20 36158441 36158945 + sense 0.0
+PPIAP3 20 36158441 36158945 + antisense 0.0
+GLRXP 20 36231254 36231587 - sense 0.0
+GLRXP 20 36231254 36231587 - antisense 0.0
+LINC00489 20 36247700 36251521 - sense 0.0
+LINC00489 20 36247700 36251521 - antisense 0.0
+RP4-640H8.2 20 36305312 36311636 + sense 0.0
+RP4-640H8.2 20 36305312 36311636 + antisense 0.0
+CTNNBL1 20 36322408 36500531 + sense 0.0
+CTNNBL1 20 36322408 36500531 + antisense 0.0
+VSTM2L 20 36531499 36573752 + sense 0.0
+VSTM2L 20 36531499 36573752 + antisense 0.0
+RN7SKP185 20 36603558 36603883 - sense 0.0
+RN7SKP185 20 36603558 36603883 - antisense 0.0
+TTI1 20 36611409 36661870 - sense 0.0
+TTI1 20 36611409 36661870 - antisense 0.0
+RPRD1B 20 36661948 36720768 + sense 0.0
+RPRD1B 20 36661948 36720768 + antisense 0.0
+Y_RNA 20 36681049 36681148 - sense 0.0
+Y_RNA 20 36681049 36681148 - antisense 0.0
+RN7SL237P 20 36726798 36727102 - sense 0.0
+RN7SL237P 20 36726798 36727102 - antisense 0.0
+TGM2 20 36756863 36794980 - sense 0.0
+TGM2 20 36756863 36794980 - antisense 0.0
+KIAA1755 20 36838890 36889174 - sense 0.0
+KIAA1755 20 36838890 36889174 - antisense 0.0
+BPI 20 36888551 36965907 + sense 0.0
+BPI 20 36888551 36965907 + antisense 0.0
+CTD-2308N23.2 20 36916733 36954938 - sense 0.0
+CTD-2308N23.2 20 36916733 36954938 - antisense 0.0
+LBP 20 36974759 37005665 + sense 0.0
+LBP 20 36974759 37005665 + antisense 0.0
+RP4-564F22.5 20 37034658 37045444 - sense 0.0
+RP4-564F22.5 20 37034658 37045444 - antisense 0.0
+SNHG17 20 37049235 37063996 - sense 0.0
+SNHG17 20 37049235 37063996 - antisense 0.0
+SNORA71B 20 37053843 37053979 - sense 0.0
+SNORA71B 20 37053843 37053979 - antisense 0.0
+SNORA71A 20 37055952 37056085 - sense 0.0
+SNORA71A 20 37055952 37056085 - antisense 0.0
+SNORA71C 20 37058313 37058446 - sense 0.0
+SNORA71C 20 37058313 37058446 - antisense 0.0
+SNORA71D 20 37062508 37062641 - sense 0.0
+SNORA71D 20 37062508 37062641 - antisense 0.0
+SNORA71 20 37070679 37070812 + sense 0.0
+SNORA71 20 37070679 37070812 + antisense 0.0
+SNHG11 20 37075221 37079564 + sense 0.0
+SNHG11 20 37075221 37079564 + antisense 0.0
+SNORA60 20 37078013 37078146 + sense 0.0
+SNORA60 20 37078013 37078146 + antisense 0.0
+RALGAPB 20 37101459 37207504 + sense 0.0
+RALGAPB 20 37101459 37207504 + antisense 0.0
+MIR548O2 20 37145206 37145275 + sense 0.0
+MIR548O2 20 37145206 37145275 + antisense 0.0
+RPS3P2 20 37166401 37167101 + sense 0.0
+RPS3P2 20 37166401 37167101 + antisense 0.0
+ADIG 20 37209838 37217106 + sense 0.0
+ADIG 20 37209838 37217106 + antisense 0.0
+ARHGAP40 20 37230577 37279678 + sense 0.0
+ARHGAP40 20 37230577 37279678 + antisense 0.0
+RP5-1100H13.3 20 37243556 37244119 - sense 0.0
+RP5-1100H13.3 20 37243556 37244119 - antisense 0.0
+SLC32A1 20 37353105 37358015 + sense 0.0
+SLC32A1 20 37353105 37358015 + antisense 0.0
+ACTR5 20 37377085 37400834 + sense 0.0
+ACTR5 20 37377085 37400834 + antisense 0.0
+RN7SKP173 20 37390171 37390485 + sense 0.0
+RN7SKP173 20 37390171 37390485 + antisense 0.0
+PPP1R16B 20 37434348 37551667 + sense 0.0
+PPP1R16B 20 37434348 37551667 + antisense 0.0
+RN7SL116P 20 37501413 37501720 + sense 0.0
+RN7SL116P 20 37501413 37501720 + antisense 0.0
+FAM83D 20 37554955 37581703 + sense 0.0
+FAM83D 20 37554955 37581703 + antisense 0.0
+RP4-616B8.4 20 37590568 37590754 - sense 0.0
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+DHX35 20 37590942 37668366 + sense 0.0
+DHX35 20 37590942 37668366 + antisense 0.0
+NPM1P19 20 37606354 37607065 - sense 0.0
+NPM1P19 20 37606354 37607065 - antisense 0.0
+RP4-705O1.1 20 37842420 37853391 - sense 0.0
+RP4-705O1.1 20 37842420 37853391 - antisense 0.0
+AL121588.1 20 37900183 37900258 + sense 0.0
+AL121588.1 20 37900183 37900258 + antisense 0.0
+ATG3P1 20 37957657 37958567 - sense 0.0
+ATG3P1 20 37957657 37958567 - antisense 0.0
+RN7SL680P 20 37977739 37978035 - sense 0.0
+RN7SL680P 20 37977739 37978035 - antisense 0.0
+RN7SL194P 20 37981402 37981674 + sense 0.0
+RN7SL194P 20 37981402 37981674 + antisense 0.0
+RP5-1031J8.1 20 38414363 38441871 + sense 0.0
+RP5-1031J8.1 20 38414363 38441871 + antisense 0.0
+HSPE1P1 20 38561564 38561881 - sense 0.0
+HSPE1P1 20 38561564 38561881 - antisense 0.0
+RP11-101E14.2 20 38633119 38637171 + sense 0.0
+RP11-101E14.2 20 38633119 38637171 + antisense 0.0
+RP11-101E14.3 20 38660227 38672531 + sense 0.0
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+AL009050.1 20 38731860 38731998 - sense 0.0
+AL009050.1 20 38731860 38731998 - antisense 0.0
+RP1-191L6.2 20 38749682 38754998 + sense 0.0
+RP1-191L6.2 20 38749682 38754998 + antisense 0.0
+SNORD112 20 39045515 39045586 + sense 0.0
+SNORD112 20 39045515 39045586 + antisense 0.0
+MAFB 20 39314488 39317880 - sense 0.0
+MAFB 20 39314488 39317880 - antisense 0.0
+RP4-644L1.2 20 39326535 39327256 - sense 0.0
+RP4-644L1.2 20 39326535 39327256 - antisense 0.0
+RNA5SP484 20 39482759 39482869 - sense 0.0
+RNA5SP484 20 39482759 39482869 - antisense 0.0
+RNU2-52P 20 39652845 39653034 + sense 0.0
+RNU2-52P 20 39652845 39653034 + antisense 0.0
+TOP1 20 39657458 39753127 + sense 0.0
+TOP1 20 39657458 39753127 + antisense 0.0
+RP1-1J6.2 20 39726969 39766643 - sense 0.0
+RP1-1J6.2 20 39726969 39766643 - antisense 0.0
+PLCG1 20 39765600 39811629 + sense 0.0
+PLCG1 20 39765600 39811629 + antisense 0.0
+ZHX3 20 39807088 39946312 - sense 0.0
+ZHX3 20 39807088 39946312 - antisense 0.0
+RP3-511B24.6 20 39809096 39825427 + sense 0.0
+RP3-511B24.6 20 39809096 39825427 + antisense 0.0
+RP3-511B24.5 20 39825287 39825578 - sense 0.0
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+RPL23AP81 20 39825331 39825797 + sense 0.0
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+RN7SL615P 20 39918922 39919217 - sense 0.0
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+RP3-450M14.1 20 39959763 39960300 + sense 0.0
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+LPIN3 20 39969560 39989222 + sense 0.0
+LPIN3 20 39969560 39989222 + antisense 0.0
+EMILIN3 20 39988606 39995467 - sense 0.0
+EMILIN3 20 39988606 39995467 - antisense 0.0
+RP4-620E11.5 20 40011023 40011747 + sense 0.0
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+CHD6 20 40030741 40247133 - sense 0.0
+CHD6 20 40030741 40247133 - antisense 0.0
+RP4-620E11.4 20 40087994 40090584 - sense 0.0
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+RPL12P11 20 40176061 40176561 + sense 0.0
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+RNU6-1018P 20 40313625 40313730 - sense 0.0
+RNU6-1018P 20 40313625 40313730 - antisense 0.0
+Y_RNA 20 40328260 40328355 - sense 0.0
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+SNORA26 20 40341118 40341239 - sense 0.0
+SNORA26 20 40341118 40341239 - antisense 0.0
+RP5-1121H13.4 20 40619780 40692609 + sense 0.0
+RP5-1121H13.4 20 40619780 40692609 + antisense 0.0
+RP5-1121H13.1 20 40625771 40628037 - sense 0.0
+RP5-1121H13.1 20 40625771 40628037 - antisense 0.0
+RP5-1121H13.3 20 40642674 40644118 - sense 0.0
+RP5-1121H13.3 20 40642674 40644118 - antisense 0.0
+PTPRT 20 40701392 41818610 - sense 0.0
+PTPRT 20 40701392 41818610 - antisense 0.0
+RP4-730D4.1 20 41235334 41236199 + sense 0.0
+RP4-730D4.1 20 41235334 41236199 + antisense 0.0
+RP1-232N11.2 20 41314044 41317202 + sense 0.0
+RP1-232N11.2 20 41314044 41317202 + antisense 0.0
+RP4-753D4.2 20 41597383 41600132 + sense 0.0
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+RN7SKP100 20 41691966 41692249 + sense 0.0
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+RP1-269M15.3 20 41818862 41830011 + sense 0.0
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+RN7SL666P 20 41850846 41851147 + sense 0.0
+RN7SL666P 20 41850846 41851147 + antisense 0.0
+PPIAP21 20 41859400 41859900 + sense 0.0
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+SCARNA15 20 41933195 41933319 + sense 0.0
+SCARNA15 20 41933195 41933319 + antisense 0.0
+RP5-862K6.4 20 42017282 42017681 - sense 0.0
+RP5-862K6.4 20 42017282 42017681 - antisense 0.0
+RNU6-743P 20 42034113 42034218 + sense 0.0
+RNU6-743P 20 42034113 42034218 + antisense 0.0
+EIF4EBP2P1 20 42051836 42052178 - sense 0.0
+EIF4EBP2P1 20 42051836 42052178 - antisense 0.0
+Y_RNA 20 42079799 42079900 - sense 0.0
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+SRSF6 20 42086568 42092245 + sense 0.0
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+RNU6-1251P 20 42101653 42101759 + sense 0.0
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+L3MBTL1 20 42136320 42179590 + sense 0.0
+L3MBTL1 20 42136320 42179590 + antisense 0.0
+RP1-138B7.4 20 42151901 42152212 - sense 0.0
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+RP1-138B7.5 20 42178029 42179589 - sense 0.0
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+SGK2 20 42187608 42216877 + sense 0.0
+SGK2 20 42187608 42216877 + antisense 0.0
+IFT52 20 42219571 42275936 + sense 0.0
+IFT52 20 42219571 42275936 + antisense 0.0
+RPL27AP 20 42281163 42281931 + sense 0.0
+RPL27AP 20 42281163 42281931 + antisense 0.0
+MYBL2 20 42295754 42345136 + sense 0.0
+MYBL2 20 42295754 42345136 + antisense 0.0
+GTSF1L 20 42354804 42355638 - sense 0.0
+GTSF1L 20 42354804 42355638 - antisense 0.0
+RNU6-639P 20 42425077 42425183 - sense 0.0
+RNU6-639P 20 42425077 42425183 - antisense 0.0
+RP5-1030M6.3 20 42523360 42524108 + sense 0.0
+RP5-1030M6.3 20 42523360 42524108 + antisense 0.0
+TOX2 20 42543504 42698256 + sense 0.0
+TOX2 20 42543504 42698256 + antisense 0.0
+RN7SL443P 20 42635888 42636178 + sense 0.0
+RN7SL443P 20 42635888 42636178 + antisense 0.0
+JPH2 20 42740335 42816218 - sense 0.0
+JPH2 20 42740335 42816218 - antisense 0.0
+OSER1 20 42825136 42839431 - sense 0.0
+OSER1 20 42825136 42839431 - antisense 0.0
+OSER1-AS1 20 42839600 42854667 + sense 0.0
+OSER1-AS1 20 42839600 42854667 + antisense 0.0
+GDAP1L1 20 42875887 42909013 + sense 0.0
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+FITM2 20 42931478 42939809 - sense 0.0
+FITM2 20 42931478 42939809 - antisense 0.0
+R3HDML 20 42965626 42979875 + sense 0.0
+R3HDML 20 42965626 42979875 + antisense 0.0
+Y_RNA 20 42973479 42973569 + sense 0.0
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+RP5-881L22.5 20 42976192 42983825 - sense 0.0
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+HNF4A 20 42984340 43061485 + sense 0.0
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+HNF4A-AS1 20 43001386 43024346 - sense 0.0
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+RP5-881L22.6 20 43018264 43020177 - sense 0.0
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+MIR3646 20 43036760 43036843 + sense 0.0
+MIR3646 20 43036760 43036843 + antisense 0.0
+AL132772.1 20 43053692 43053781 - sense 0.0
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+RP5-1013A22.5 20 43062837 43063236 + sense 0.0
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+RP5-1013A22.2 20 43077417 43078732 - sense 0.0
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+C20orf62 20 43080624 43093984 - sense 0.0
+C20orf62 20 43080624 43093984 - antisense 0.0
+RPL37AP1 20 43095204 43095482 - sense 0.0
+RPL37AP1 20 43095204 43095482 - antisense 0.0
+TTPAL 20 43104526 43123244 + sense 0.0
+TTPAL 20 43104526 43123244 + antisense 0.0
+SERINC3 20 43124862 43150750 - sense 0.0
+SERINC3 20 43124862 43150750 - antisense 0.0
+PKIG 20 43160426 43252888 + sense 0.0
+PKIG 20 43160426 43252888 + antisense 0.0
+Z97053.1 20 43234346 43248126 - sense 0.0
+Z97053.1 20 43234346 43248126 - antisense 0.0
+ADA 20 43248163 43280874 - sense 0.0
+ADA 20 43248163 43280874 - antisense 0.0
+RP11-445H22.3 20 43285092 43324737 - sense 0.0
+RP11-445H22.3 20 43285092 43324737 - antisense 0.0
+RP11-445H22.4 20 43323533 43374662 - sense 0.0
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+WISP2 20 43343485 43357150 + sense 0.0
+WISP2 20 43343485 43357150 + antisense 0.0
+KCNK15 20 43374421 43379675 + sense 0.0
+KCNK15 20 43374421 43379675 + antisense 0.0
+RIMS4 20 43380449 43438979 - sense 0.0
+RIMS4 20 43380449 43438979 - antisense 0.0
+RN7SL31P 20 43509479 43509775 - sense 0.0
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+YWHAB 20 43514317 43537173 + sense 0.0
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+PABPC1L 20 43538703 43587676 + sense 0.0
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+TOMM34 20 43570771 43589127 - sense 0.0
+TOMM34 20 43570771 43589127 - antisense 0.0
+STK4-AS1 20 43592435 43595043 - sense 0.0
+STK4-AS1 20 43592435 43595043 - antisense 0.0
+STK4 20 43595115 43708600 + sense 0.0
+STK4 20 43595115 43708600 + antisense 0.0
+Y_RNA 20 43632989 43633095 + sense 0.0
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+KCNS1 20 43720951 43729753 - sense 0.0
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+WFDC5 20 43738093 43743813 - sense 0.0
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+WFDC12 20 43752066 43753106 - sense 0.0
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+PI3 20 43803517 43805185 + sense 0.0
+PI3 20 43803517 43805185 + antisense 0.0
+SEMG1 20 43835638 43838413 + sense 0.0
+SEMG1 20 43835638 43838413 + antisense 0.0
+SEMG2 20 43849941 43853099 + sense 0.0
+SEMG2 20 43849941 43853099 + antisense 0.0
+RP1-300I2.3 20 43858458 43858832 + sense 0.0
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+RP1-300I2.2 20 43859509 43861972 + sense 0.0
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+SLPI 20 43880880 43883205 - sense 0.0
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+MATN4 20 43922085 43937169 - sense 0.0
+MATN4 20 43922085 43937169 - antisense 0.0
+RBPJL 20 43935491 43945803 + sense 0.0
+RBPJL 20 43935491 43945803 + antisense 0.0
+SDC4 20 43953928 43977064 - sense 0.0
+SDC4 20 43953928 43977064 - antisense 0.0
+SYS1 20 43990577 44005438 + sense 0.0
+SYS1 20 43990577 44005438 + antisense 0.0
+SYS1-DBNDD2 20 43991840 44039250 + sense 0.0
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+TP53TG5 20 44002526 44036529 - sense 0.0
+TP53TG5 20 44002526 44036529 - antisense 0.0
+RP3-453C12.8 20 44016987 44017345 - sense 0.0
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+DBNDD2 20 44034697 44039250 + sense 0.0
+DBNDD2 20 44034697 44039250 + antisense 0.0
+PIGT 20 44044717 44054884 + sense 0.0
+PIGT 20 44044717 44054884 + antisense 0.0
+AL031663.2 20 44074071 44077220 + sense 0.0
+AL031663.2 20 44074071 44077220 + antisense 0.0
+RP3-461P17.10 20 44076042 44076982 + sense 0.0
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+AL031663.1 20 44095910 44107452 - sense 0.0
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+WFDC2 20 44098346 44110172 + sense 0.0
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+RP3-461P17.9 20 44116253 44118888 + sense 0.0
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+RPL5P2 20 44119458 44120311 - sense 0.0
+RPL5P2 20 44119458 44120311 - antisense 0.0
+SPINT3 20 44141101 44144264 - sense 0.0
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+WFDC6 20 44162835 44168134 - sense 0.0
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+RP3-461P17.6 20 44165435 44165653 - sense 0.0
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+EPPIN 20 44165625 44176391 - sense 0.0
+EPPIN 20 44165625 44176391 - antisense 0.0
+EPPIN-WFDC6 20 44165625 44176065 - sense 0.0
+EPPIN-WFDC6 20 44165625 44176065 - antisense 0.0
+HSPD1P21 20 44168622 44168866 - sense 0.0
+HSPD1P21 20 44168622 44168866 - antisense 0.0
+WFDC8 20 44179792 44207965 - sense 0.0
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+RNA5SP485 20 44188397 44188515 - sense 0.0
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+CCNB1IP1P2 20 44196629 44197446 - sense 0.0
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+WFDC9 20 44236578 44259907 - sense 0.0
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+WFDC10A 20 44258165 44259835 + sense 0.0
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+RPS2P7 20 44269125 44270009 - sense 0.0
+RPS2P7 20 44269125 44270009 - antisense 0.0
+WFDC11 20 44277202 44298909 - sense 0.0
+WFDC11 20 44277202 44298909 - antisense 0.0
+WFDC10B 20 44313292 44333658 - sense 0.0
+WFDC10B 20 44313292 44333658 - antisense 0.0
+WFDC13 20 44330655 44337456 + sense 0.0
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+MIR3617 20 44333741 44333819 - sense 0.0
+MIR3617 20 44333741 44333819 - antisense 0.0
+SPINT4 20 44350990 44354469 + sense 0.0
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+HNRNPA1P3 20 44374376 44374926 - sense 0.0
+HNRNPA1P3 20 44374376 44374926 - antisense 0.0
+WFDC3 20 44376583 44420571 - sense 0.0
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+SPINT5P 20 44378559 44378713 + sense 0.0
+SPINT5P 20 44378559 44378713 + antisense 0.0
+RNU6ATAC38P 20 44407337 44407462 + sense 0.0
+RNU6ATAC38P 20 44407337 44407462 + antisense 0.0
+DNTTIP1 20 44420576 44440066 + sense 0.0
+DNTTIP1 20 44420576 44440066 + antisense 0.0
+UBE2C 20 44441215 44445596 + sense 0.0
+UBE2C 20 44441215 44445596 + antisense 0.0
+TNNC2 20 44451853 44462384 - sense 0.0
+TNNC2 20 44451853 44462384 - antisense 0.0
+SNX21 20 44462449 44471914 + sense 0.0
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+ACOT8 20 44470360 44486045 - sense 0.0
+ACOT8 20 44470360 44486045 - antisense 0.0
+ZSWIM3 20 44486256 44507761 + sense 0.0
+ZSWIM3 20 44486256 44507761 + antisense 0.0
+ZSWIM1 20 44509866 44513905 + sense 0.0
+ZSWIM1 20 44509866 44513905 + antisense 0.0
+SPATA25 20 44515128 44516274 - sense 0.0
+SPATA25 20 44515128 44516274 - antisense 0.0
+NEURL2 20 44517264 44519926 - sense 0.0
+NEURL2 20 44517264 44519926 - antisense 0.0
+CTSA 20 44518783 44527459 + sense 0.0
+CTSA 20 44518783 44527459 + antisense 0.0
+RP3-337O18.9 20 44521333 44522058 - sense 0.0
+RP3-337O18.9 20 44521333 44522058 - antisense 0.0
+PLTP 20 44527399 44540794 - sense 0.0
+PLTP 20 44527399 44540794 - antisense 0.0
+PCIF1 20 44563267 44576662 + sense 0.0
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+ZNF335 20 44577292 44600833 - sense 0.0
+ZNF335 20 44577292 44600833 - antisense 0.0
+FTLP1 20 44603888 44604714 - sense 0.0
+FTLP1 20 44603888 44604714 - antisense 0.0
+MMP9 20 44637547 44645200 + sense 0.0
+MMP9 20 44637547 44645200 + antisense 0.0
+RP11-465L10.10 20 44642141 44650712 - sense 0.0
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+AL162458.1 20 44644111 44644231 + sense 0.0
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+SLC12A5 20 44650356 44688784 + sense 0.0
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+NCOA5 20 44689624 44718591 - sense 0.0
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+RPL13P2 20 44728157 44728815 + sense 0.0
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+CD40 20 44746911 44758502 + sense 0.0
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+RP5-998H6.2 20 44797043 44799876 - sense 0.0
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+CDH22 20 44802372 44937137 - sense 0.0
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+SLC35C2 20 44978167 44993043 - sense 0.0
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+ELMO2 20 44994688 45061704 - sense 0.0
+ELMO2 20 44994688 45061704 - antisense 0.0
+ZNF663P 20 45042867 45087915 - sense 0.0
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+MKRN7P 20 45092541 45093763 - sense 0.0
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+ZNF840 20 45113100 45121279 + sense 0.0
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+ZNF334 20 45129701 45142198 - sense 0.0
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+OCSTAMP 20 45169585 45179213 - sense 0.0
+OCSTAMP 20 45169585 45179213 - antisense 0.0
+SLC13A3 20 45186463 45304714 - sense 0.0
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+TP53RK 20 45313004 45318418 - sense 0.0
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+RP1-28H20.3 20 45318298 45318928 + sense 0.0
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+SLC2A10 20 45338126 45364965 + sense 0.0
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+AL031055.1 20 45439477 45439561 - sense 0.0
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+RN7SKP33 20 45487972 45488311 + sense 0.0
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+RP11-323C15.1 20 45492202 45492743 - sense 0.0
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+EYA2 20 45523263 45817492 + sense 0.0
+EYA2 20 45523263 45817492 + antisense 0.0
+RP11-323C15.2 20 45529782 45530365 - sense 0.0
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+GAPDHP54 20 45626235 45627127 + sense 0.0
+GAPDHP54 20 45626235 45627127 + antisense 0.0
+RP5-1050K3.3 20 45700504 45700875 + sense 0.0
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+RP5-890O15.3 20 45789477 45790339 - sense 0.0
+RP5-890O15.3 20 45789477 45790339 - antisense 0.0
+MIR3616 20 45795609 45795700 + sense 0.0
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+ZMYND8 20 45837859 45985567 - sense 0.0
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+RN7SL243P 20 45936797 45937126 - sense 0.0
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+AL031666.1 20 45943269 45943336 - sense 0.0
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+AL031666.2 20 45947246 45949467 + sense 0.0
+AL031666.2 20 45947246 45949467 + antisense 0.0
+RP4-569M23.4 20 45976881 45977886 - sense 0.0
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+RP4-569M23.2 20 45981305 45983377 + sense 0.0
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+RP1-148H17.1 20 46020673 46041071 - sense 0.0
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+RPL35AP 20 46106958 46107754 - sense 0.0
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+RNU6-497P 20 46113022 46113125 - sense 0.0
+RNU6-497P 20 46113022 46113125 - antisense 0.0
+RNU6-563P 20 46121722 46121829 - sense 0.0
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+NCOA3 20 46130601 46285621 + sense 0.0
+NCOA3 20 46130601 46285621 + antisense 0.0
+AL021394.1 20 46199679 46199759 + sense 0.0
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+RP5-1049G16.4 20 46259010 46260182 - sense 0.0
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+SULF2 20 46285092 46415360 - sense 0.0
+SULF2 20 46285092 46415360 - antisense 0.0
+CTD-2653D5.1 20 46306645 46315041 + sense 0.0
+CTD-2653D5.1 20 46306645 46315041 + antisense 0.0
+RNU7-173P 20 46455713 46455788 - sense 0.0
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+SRMP1 20 46488532 46489416 + sense 0.0
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+RNA5SP486 20 46501935 46502017 + sense 0.0
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+RNU7-92P 20 46533092 46533167 + sense 0.0
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+RP11-347D21.1 20 46579543 46580799 + sense 0.0
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+RP11-347D21.3 20 46609232 46617488 - sense 0.0
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+RP11-347D21.4 20 46612148 46613057 + sense 0.0
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+SNORD36 20 46764686 46764766 - sense 0.0
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+LINC00494 20 46988693 46999372 + sense 0.0
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+RP1-66N13.1 20 47012066 47013638 - sense 0.0
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+PREX1 20 47240790 47444420 - sense 0.0
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+AL035106.1 20 47355867 47355985 - sense 0.0
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+ARFGEF2 20 47538427 47653230 + sense 0.0
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+SNAP23P 20 47654894 47655139 - sense 0.0
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+CSE1L 20 47662849 47713489 + sense 0.0
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+STAU1 20 47729878 47804904 - sense 0.0
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+ARPC3P1 20 47751017 47751549 + sense 0.0
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+DDX27 20 47835884 47860614 + sense 0.0
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+ZNFX1 20 47854483 47894963 - sense 0.0
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+ZFAS1 20 47894715 47905797 + sense 0.0
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+SNORD12C 20 47895477 47895565 + sense 0.0
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+SNORD12B 20 47896856 47896946 + sense 0.0
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+SNORD12 20 47897220 47897309 + sense 0.0
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+KCNB1 20 47980414 48099184 - sense 0.0
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+PTGIS 20 48120411 48184683 - sense 0.0
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+AL118525.1 20 48203218 48203311 + sense 0.0
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+B4GALT5 20 48249482 48330415 - sense 0.0
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+RNU6-919P 20 48411348 48411451 + sense 0.0
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+SPATA2 20 48519928 48532080 - sense 0.0
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+Y_RNA 20 48537134 48537231 - sense 0.0
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+RNF114 20 48552948 48570429 + sense 0.0
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+snoU13 20 48556833 48556937 - sense 0.0
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+KRT18P4 20 48573282 48574569 + sense 0.0
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+RNU6-147P 20 48588643 48588749 + sense 0.0
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+SNAI1 20 48599536 48605423 + sense 0.0
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+TRERNA1 20 48657253 48658041 - sense 0.0
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+TMEM189-UBE2V1 20 48697661 48770174 - sense 0.0
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+UBE2V1 20 48697661 48732496 - sense 0.0
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+TMEM189 20 48697663 48770335 - sense 0.0
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+RP11-112L6.3 20 48780001 48782639 - sense 0.0
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+RP11-112L6.4 20 48789087 48793096 + sense 0.0
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+CEBPB 20 48807376 48809212 + sense 0.0
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+RP11-290F20.3 20 48884023 48896332 + sense 0.0
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+RP11-290F20.1 20 48909257 48931459 + sense 0.0
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+RP11-290F20.2 20 48927248 48937879 - sense 0.0
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+RN7SL636P 20 49045729 49046020 - sense 0.0
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+COX6CP2 20 49096304 49096528 + sense 0.0
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+PTPN1 20 49126891 49201299 + sense 0.0
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+RPL36P2 20 49237300 49237614 + sense 0.0
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+PARD6B 20 49348081 49373332 + sense 0.0
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+BCAS4 20 49411431 49493714 + sense 0.0
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+AL133228.1 20 49477445 49477523 + sense 0.0
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+ADNP 20 49505585 49547958 - sense 0.0
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+DPM1 20 49551404 49575092 - sense 0.0
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+AL034553.1 20 49555183 49555269 + sense 0.0
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+MOCS3 20 49575363 49577820 + sense 0.0
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+RP5-955M13.4 20 49615907 49626556 + sense 0.0
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+KCNG1 20 49620193 49639666 - sense 0.0
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+RPSAP1 20 49747325 49748204 - sense 0.0
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+AL035457.1 20 49794042 49794136 + sense 0.0
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+AL079339.1 20 49993772 49993858 - sense 0.0
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+NFATC2 20 50003494 50179370 - sense 0.0
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+MIR3194 20 50069442 50069514 - sense 0.0
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+ATP9A 20 50213053 50385173 - sense 0.0
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+SALL4 20 50400581 50419059 - sense 0.0
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+RP5-1112F19.2 20 50448336 50479451 - sense 0.0
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+ZFP64 20 50668202 50820847 - sense 0.0
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+ERP29P1 20 50726883 50727588 - sense 0.0
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+RP4-583K8.1 20 51068003 51072158 - sense 0.0
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+RP5-1022J11.2 20 51104461 51117130 - sense 0.0
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+MRPS33P4 20 51127791 51128107 + sense 0.0
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+RP4-715N11.2 20 51288456 51307468 + sense 0.0
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+RP11-80K6.2 20 51474877 51479394 - sense 0.0
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+RPL36P1 20 51506701 51506925 + sense 0.0
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+TSHZ2 20 51588946 52111869 + sense 0.0
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+AL050316.1 20 51679156 51679240 + sense 0.0
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+RN7SKP184 20 51714191 51714523 + sense 0.0
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+RP11-15M15.1 20 51785182 51796089 - sense 0.0
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+RP5-823G15.5 20 52069597 52120853 - sense 0.0
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+AL354993.1 20 52105495 52106164 + sense 0.0
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+Y_RNA 20 52161154 52161264 + sense 0.0
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+ZNF217 20 52183604 52226446 - sense 0.0
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+AC005808.3 20 52224893 52251129 + sense 0.0
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+SUMO1P1 20 52491791 52492096 - sense 0.0
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+PFDN4 20 52824386 52844591 + sense 0.0
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+DOK5 20 53092136 53267710 + sense 0.0
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+CBLN4 20 54572496 54580528 - sense 0.0
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+RNA5SP487 20 54780108 54780229 - sense 0.0
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+MC3R 20 54823788 54824871 + sense 0.0
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+FAM210B 20 54933971 54943719 + sense 0.0
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+AURKA 20 54944445 54967393 - sense 0.0
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+CSTF1 20 54967427 54979518 + sense 0.0
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+CASS4 20 54987168 55034396 + sense 0.0
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+RPL39P 20 55034484 55034639 - sense 0.0
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+AL121914.1 20 55035322 55035413 - sense 0.0
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+RTFDC1 20 55043647 55093943 + sense 0.0
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+snoU13 20 55050699 55050801 + sense 0.0
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+GCNT7 20 55066548 55100981 - sense 0.0
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+FAM209A 20 55092243 55101198 + sense 0.0
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+FAM209B 20 55108302 55111576 + sense 0.0
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+RPS4XP3 20 55176757 55177169 + sense 0.0
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+U3 20 55182733 55182849 + sense 0.0
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+TFAP2C 20 55204358 55214339 + sense 0.0
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+RNU6-1146P 20 55242486 55242587 + sense 0.0
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+PTMAP6 20 55275893 55276570 - sense 0.0
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+AL133232.1 20 55293942 55294025 + sense 0.0
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+AL117380.1 20 55629846 55629897 + sense 0.0
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+BMP7 20 55743804 55841685 - sense 0.0
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+Y_RNA 20 55886910 55887014 + sense 0.0
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+SPO11 20 55904815 55919050 + sense 0.0
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+RAE1 20 55926066 55954267 + sense 0.0
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+MTND1P9 20 55932482 55933425 - sense 0.0
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+MTRNR2L3 20 55933496 55934878 - sense 0.0
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+RBM38 20 55966463 55984389 + sense 0.0
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+HMGB1P1 20 56063448 56064083 - sense 0.0
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+CTCFL 20 56071035 56100708 - sense 0.0
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+PCK1 20 56136136 56141513 + sense 0.0
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+ZBP1 20 56178902 56195632 - sense 0.0
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+PMEPA1 20 56223448 56286592 - sense 0.0
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+MIR4532 20 56470450 56470500 + sense 0.0
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+AL354984.1 20 56493940 56494091 + sense 0.0
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+RP13-379L11.2 20 56532182 56534716 - sense 0.0
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+AL354984.2 20 56642512 56642663 + sense 0.0
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+RP13-379L11.3 20 56672323 56672647 + sense 0.0
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+C20orf85 20 56725960 56736206 + sense 0.0
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+LINC00686 20 61326376 61331832 - sense 0.0
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+OGFR 20 61436187 61445352 + sense 0.0
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+BHLHE23 20 61637331 61638387 - sense 0.0
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+MIR124-3 20 61809852 61809938 + sense 0.0
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+YTHDF1 20 61826781 61847586 - sense 0.0
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+BIRC7 20 61867235 61871859 + sense 0.0
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+NKAIN4 20 61872136 61904046 - sense 0.0
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+PTK6 20 62159778 62168723 - sense 0.0
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+SRMS 20 62172163 62178857 - sense 0.0
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+C20orf195 20 62184373 62188061 + sense 0.0
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+HELZ2 20 62189439 62205592 - sense 0.0
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+RTEL1 20 62289163 62328416 + sense 0.0
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+DNAJC5 20 62526518 62567384 + sense 0.0
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+SOX18 20 62679076 62680994 - sense 0.0
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+NPBWR2 20 62737173 62738524 - sense 0.0
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+CICP4 20 62921540 62924351 - sense 0.0
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