From 0ad3c70f7f0f9d2ebd75f055f6b35f4ba1a6ea48 Mon Sep 17 00:00:00 2001 From: gbggrant Date: Thu, 19 May 2022 13:19:52 -0400 Subject: [PATCH] Updated documentation. --- .../variantstore/variant_annotations_table/GvsValidateVAT.wdl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/variantstore/variant_annotations_table/GvsValidateVAT.wdl b/scripts/variantstore/variant_annotations_table/GvsValidateVAT.wdl index 47a444536a8..1f0d2cda152 100644 --- a/scripts/variantstore/variant_annotations_table/GvsValidateVAT.wdl +++ b/scripts/variantstore/variant_annotations_table/GvsValidateVAT.wdl @@ -1266,8 +1266,8 @@ task GenerateFinalReport { declare -a VNS=(~{sep=' ' validation_names}) # the strings in validation_results may contain spaces, so we cannot directly sep it (by space) into an array - # So, first separate it by '&' (unlikely to be used in results) - # And then create a bash array using read with IFS set to '&' + # So, first convert it into a string with constituent strings sep'd by the '&' (chosen as it is unlikely to be used in results) + # And then convert the string into a bash array using read with IFS set to '&' declare -a VRS_STRING="~{sep='&' validation_results}" IFS='&' read -r -a VRS <<< "$VRS_STRING"