VS-1490 - Refactor python code from extract dir into a scripts directory. #4826

Job	Run time
check if the environment has privileges	1s
Validate script WDLs using womtools	50s
Validate generated WDLs using womtools	13m 19s
build and push gatk docker to artifacts	2h 4m 3s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1m 56s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	2h 22m 42s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	3h 23m 53s
WDL test RUN_M2_WDL on cromwell	1h 31m 44s
WDL test RUN_CNN_WDL on cromwell	2h 12m 56s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1h 59m 30s
Java 17.0.6+10 build and test cloud	15m 56s
Java 17.0.6+10 build and test integration	33m 37s
Java 17.0.6+10 build and test unit	20m 13s
Java 17.0.6+10 test on docker integration	38m 32s
Java 17.0.6+10 test on docker unit	22m 29s
Java 17.0.6+10 test on docker variantcalling	32m 17s
Java 17.0.6+10 test on docker conda	30m 23s
	17h 4m 21s

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