VS-1476. Removing All usage of VQSR from VDS creation. #4784

Job	Run time
check if the environment has privileges	1s
Validate script WDLs using womtools	1m 11s
Validate generated WDLs using womtools	13m 21s
build and push gatk docker to artifacts	35m 13s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	46m 35s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	25m 42s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	40m 23s
WDL test RUN_M2_WDL on cromwell	31m 6s
WDL test RUN_CNN_WDL on cromwell	31m 53s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	33m 40s
Java 17.0.6+10 build and test cloud	16m 53s
Java 17.0.6+10 build and test integration	34m 21s
Java 17.0.6+10 build and test unit	20m 33s
Java 17.0.6+10 test on docker integration	39m 43s
Java 17.0.6+10 test on docker unit	23m 33s
Java 17.0.6+10 test on docker variantcalling	37m 51s
Java 17.0.6+10 test on docker conda	33m 23s
	7h 45m 22s

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