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Modification of parameters #651

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andrewruttenberg opened this issue Mar 2, 2024 · 1 comment
Open

Modification of parameters #651

andrewruttenberg opened this issue Mar 2, 2024 · 1 comment
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documentation Improvements or additions to documentation question Further information is requested

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@andrewruttenberg
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Hello.
I was wondering if there is any documentation on the role each parameter plays within the overall code. I am trying to use GATK-SV to identify de novo structural variants and thus want to be more lenient in calling SVs in the parents to reduce the false negative rate but I cannot find any information on how I can adjust the inputs to do so.
Thank you very much.

@mwalker174 mwalker174 added documentation Improvements or additions to documentation question Further information is requested labels Jun 12, 2024
@mwalker174
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mwalker174 commented Jun 12, 2024

Hi @andrewruttenberg we are working on filtering documentation but you can reference my post over in #615 (if you're doing joint calling)

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