Rewrite the SplitVariants task command in TasksGenotypeBatch.wdl to call svtk only once #1465
Workflow file for this run
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name: Test Python Scripts | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
jobs: | |
linting: | |
name: Linting | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: 3.8 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install tox | |
pip install flake8 pytest | |
- name: Lint with flake8 | |
run: | | |
tox -e lint |