From 6c62be964552d60ea49250904cb98f5fed1f544e Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Thu, 6 Jul 2023 15:54:29 +0100
Subject: [PATCH 1/3] MANIFEST only necessary files for package install

---
 MANIFEST.in | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index aaf57952..680b6390 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1 +1,8 @@
-prune tests/data
+include README.md
+include LICENSE
+include pyproject.toml
+
+graft src
+
+prune benchmarks
+prune tests

From 6d9555968b95c8246a76d73b370376ca5d1cfd7c Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Thu, 6 Jul 2023 16:03:25 +0100
Subject: [PATCH 2/3] Add MANIFEST check to CI

---
 .github/workflows/test_and_deploy.yml | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 8ec68cfb..d6497728 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -12,9 +12,16 @@ jobs:
   linting:
     runs-on: ubuntu-latest
     steps:
-      - uses: neuroinformatics-unit/actions/lint@v1.2.0
+      - uses: neuroinformatics-unit/actions/lint@v2
+
+  manifest:
+    name: Check Manifest
+    runs-on: ubuntu-latest
+    steps:
+      - uses: neuroinformatics-unit/actions/check_manifest@v2
 
   test:
+    needs: [linting, manifest]
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
@@ -42,6 +49,7 @@ jobs:
   # Run cellfinder tests to make sure cellfinder is still compatible
   # with cellfinder-core
   test_cellfinder:
+    needs: [linting, manifest]
     name: Run cellfinder tests
     runs-on: ubuntu-latest
     steps:

From eca7775e4380b4cae61767a39b1a7d0aacc68b3d Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Thu, 6 Jul 2023 16:08:51 +0100
Subject: [PATCH 3/3] Obey check-manifest overlords

---
 MANIFEST.in | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/MANIFEST.in b/MANIFEST.in
index 680b6390..995fdf64 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -2,6 +2,11 @@ include README.md
 include LICENSE
 include pyproject.toml
 
+exclude *.yml
+exclude *.yaml
+exclude tox.ini
+exclude CHANGELOG.md
+
 graft src
 
 prune benchmarks