[Bug]: Explorer fails to start with virtual desktop turned on

[Akeem29]

Describe the bug

When I'm launching applications with virtual desktop turned off - they launch normally, whether they're launched through the command line or through the GUI. But when I'm trying to launch the app with Virtual Desktop turned on - they don't launch and when I launch them through the command line I get the following error (in this case with Notepad++ 8.6.9):

c:\Program Files\Notepad++>0124:err:winediag:nodrv_CreateWindow Application tried to create a window, but no driver could be loaded.
0124:err:winediag:nodrv_CreateWindow L"The explorer process failed to start."

If I'll launch the app with Virtual Desktop turned off in the bottle settings but turned on in per-application overrides - they do launch, but without taskbar
Log.txt

To Reproduce

1. Make a new bottle
2. Install an application (for example Notepad++)
3. Turn on "Virtual Desktop" in the Advanced Display Settings
4. Launch the application

Package

Flatpak from Flathub

Distribution

Fedora Linux 40 (Workstation Edition)

Debugging Information

Official Package: true
Version: '51.13'
DE/WM: gnome-xorg
Display:
    X.org: true
    X.org (port): :0
    Wayland: false
Graphics:
    vendors:
        nvidia: &id002
            vendor: nvidia
            envs:
                __NV_PRIME_RENDER_OFFLOAD: '1'
                __GLX_VENDOR_LIBRARY_NAME: nvidia
                __VK_LAYER_NV_optimus: NVIDIA_only
            icd: /usr/lib/x86_64-linux-gnu/GL/vulkan/icd.d/nvidia_icd.json
            nvngx_path: /usr/lib/x86_64-linux-gnu/GL/nvidia-555-58-02/extra/nvidia/wine
        intel: &id001
            vendor: intel
            envs:
                DRI_PRIME: '1'
            icd: /usr/lib/x86_64-linux-gnu/GL/vulkan/icd.d/intel_hasvk_icd.x86_64.json:/usr/lib/x86_64-linux-gnu/GL/vulkan/icd.d/intel_icd.x86_64.json:/usr/lib/i386-linux-gnu/GL/vulkan/icd.d/intel_hasvk_icd.i686.json:/usr/lib/i386-linux-gnu/GL/vulkan/icd.d/intel_icd.i686.json
    prime:
        integrated: *id001
        discrete: *id002
Kernel:
    Type: Linux
    Version: 6.10.6-200.fc40.x86_64
Disk:
    Total: 8259121152
    Free: 8258949120
RAM:
    MemTotal: 15.4GiB
    MemAvailable: 8.6GiB
Bottles_envs: null

Troubleshooting Logs

Log is too long to fit in 65536 characters, so it is provided as a text file embedded in "Describe the bug" section

Additional context

It doesn't seem to be related to #2120, since CMD output is entirely different